ID: uc001hir.1_intron_0_0_chr1_211836995_r.3p
GENE: (7)
chr1:211836945-211837194-


(1)
BRAIN 		(11)
CELL-LINE 		(1)
HELA 		(1)
LIVER 		(8)
OTHER 		(1)
SKIN 		(2)
XRN.ip

Sense strand
ATTATTTTTTCAATGCTGTGGATTAAAAGGCTGATTTCTGCAAGTCCTACACCCCTAACCTCCTATCCCAGAGAAAATAAAACAGGCACCTAGATTTCAAATGTGAGCCATAAGAGCAAATACTTTTTGATAAGTATAAGTATGAAGGAGTTGAACTCTGTTCAAGTAACTCAGAGCCCTTTTTCTTTTTCCTTCTAAAGAACTTCTTAATCTTCCATCCTCAGTAATTAAGAAGAAAGTTCATTTCAGT
....................................................................................(((........((((....))))......(((...((((((......)))))).....((((((((.....)))).)))).....)))...)))........................................................................
..........................................................................75..........................................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189784SRR189782SRR343334SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189787SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343336SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR189786GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)
................................................................................................................................................................TTCAAGTAACTCAGAATAG.......................................................................1920.000.00-9.001.00--4.003.00---2.00---1.00--------
................................................................................................................................................................TTCAAGTAACTCAGATAG........................................................................188.000.00-3.002.001.00--2.00----------------
................................................................................................................................................................TTCAAGTAACTCAGACG.........................................................................174.000.00---2.00----2.00--------------
...............................................................................AAACAGGCACCTAGATTTCAAACG...................................................................................................................................................242.000.00-------2.00---------------
..............................................................................................................................................................................AGCCCTTTTTCTTTTGTGG.........................................................192.000.00----2.00------------------
................................................................................................................................................................TTCAAGTAACTCAGAAAAG.......................................................................192.000.00--------2.00--------------
................................................................................................................................................................TTCAAGTAACTCAGAAAG........................................................................181.000.00-1.00---------------------
...................................TTCTGCAAGTCCTACGGTC....................................................................................................................................................................................................191.000.00---------------1.00-------
..................................................................................................................................................................................CTTTTTCTTTTTCCTTGGC.....................................................191.000.00----1.00------------------
........................................................................................................................................................................ACTCAGAGCCCTTTTTCTTTTTCCTCCCA.....................................................291.000.00----1.00------------------
............ATGCTGTGGATTAAAAGG............................................................................................................................................................................................................................1811.001.00-----------1.00-----------
............ATGCTGTGGATTAAAAGGCTGATTTC....................................................................................................................................................................................................................2611.001.00-------1.00---------------
.............................................................................................................................TTTGATAAGTATAAGTATGAAGGA.....................................................................................................2411.001.00-------------1.00---------
...ATTTTTTCAATGCTGTGAAT...................................................................................................................................................................................................................................201.000.00--1.00--------------------
..............................................................................................................................................................................AGCCCTTTTTCTTTTGTG..........................................................181.000.00----1.00------------------
........................................................................................................................................................................ACTCAGAGCCCTTTTTCC................................................................181.000.00-------1.00---------------
................................................................................................................................................................TTCAAGTAACTCAGATTAG.......................................................................191.000.00--1.00--------------------
..................................................................................................................................................................................CTTTTTCTTTTTCCTTCCAG....................................................201.000.00-------------------1.00---
................................................................................................................................................................TTCAAGTAACTCAGACATG.......................................................................191.000.00--1.00--------------------
................................................................................................................................................................TTCAAGTAACTCAGAATAT.......................................................................191.000.00--1.00--------------------
..............................................................................................................................................................................AGCCCTTTTTCTTTTTCGGC........................................................201.000.00----1.00------------------
.....................................................................................................................................................................................................AAGAACTTCTTAATCTTCAAG................................211.000.00---1.00-------------------
...........AATGCTGTGGATTAAAAGGC...........................................................................................................................................................................................................................2011.001.00----------------1.00------
.............................GCTGATTTCTGCAAGTCCTACACCCCTA.................................................................................................................................................................................................2811.001.00-----------------1.00-----
................................................................................................................................................................TTCAAGTAACTCAGAATG........................................................................181.000.00---1.00-------------------
................................................................................................................................................................TTCAAGTAACTCAGAACCG.......................................................................191.000.00---1.00-------------------
................................................................................................................................................................TTCAAGTAACTCAGAACAG.......................................................................191.000.00-----1.00-----------------
..........CAATGCTGTGGATTAAAA..............................................................................................................................................................................................................................1820.500.50--------------------0.50--

Antisense strand
ATTATTTTTTCAATGCTGTGGATTAAAAGGCTGATTTCTGCAAGTCCTACACCCCTAACCTCCTATCCCAGAGAAAATAAAACAGGCACCTAGATTTCAAATGTGAGCCATAAGAGCAAATACTTTTTGATAAGTATAAGTATGAAGGAGTTGAACTCTGTTCAAGTAACTCAGAGCCCTTTTTCTTTTTCCTTCTAAAGAACTTCTTAATCTTCCATCCTCAGTAATTAAGAAGAAAGTTCATTTCAGT
....................................................................................(((........((((....))))......(((...((((((......)))))).....((((((((.....)))).)))).....)))...)))........................................................................
..........................................................................75..........................................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189784SRR189782SRR343334SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189787SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343336SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR189786GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)
................................TAGGACTTGCAGAAATC......................................................................................................................................................................................................... 17148.0048.0048.00----------------------
................................AGGACTTGCAGAAATC.......................................................................................................................................................................................................... 1633.673.673.67----------------------
.........................................ATAGGAGGTTAGGGGTGTAGGACTT........................................................................................................................................................................................ 2513.003.00---------3.00-------------
...................................TTCTGCAAGTCCTACTC...................................................................................................................................................................................................... 171.670.001.67----------------------
.................................ATTTCTGCAAGTCCTATTT...................................................................................................................................................................................................... 191.000.00-----------1.00-----------
..............................................................................AAAACAGGCACCTAGCT........................................................................................................................................................... 171.000.00------------1.00----------
......................................................................................................................................TATAAGTATGAAGGATA................................................................................................... 171.000.00------------------1.00----
..............................................................................TCTAGGTGCCTGTTTT............................................................................................................................................................ 1690.220.22---------------------0.22-
...................................GTAGGACTTGCAGAA........................................................................................................................................................................................................ 1560.170.17----------------------0.17