ID: uc001evn.2_intron_5_0_chr1_150730457_r.3p
GENE: (2)
chr1:150730407-150730656-


(1)
AGO1.ip
(1)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(3)
BREAST
(8)
CELL-LINE
(3)
CERVIX
(2)
HEART
(3)
LIVER
(1)
OTHER
(3)
SKIN
(1)
TESTES

Sense strand
ATACTCGGAAGGTTGAAGCAGGAGAATCACTTGAACCTGAGAATCGGAGGTTGAAGTAAGCTGAGATCGTGCCATTGGACTCCAGCTTGGGTGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTGCCATTTTCATCATCAAACACTTATTTGTCCAGGATGCAGTATGACTATGTTCTTCTTCATTATGTTTTAGAATGAAGAAGCAGTACGACGTCTCATCTGGGAAAAGAATCTAAAGTTTGT
............................................................................((((.......((((((......(((((.....))))).........(((((....)))))..........))))))...))))..........................................................................................
.....................................................................70........................................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR189784SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR040035(GSM532920)
G001T. (cervix)
..........................................................................TTGGACTCCAGCTTGTGC..............................................................................................................................................................1887.000.0087.00------------------------------
..........................................................................TTGGACTCCAGCTTGTGCC.............................................................................................................................................................1942.000.0042.00------------------------------
..........................................................................TTGGACTCCAGCTTGTGG..............................................................................................................................................................1834.000.0034.00------------------------------
..........................................................................TTGGACTCCAGCTTGAGC..............................................................................................................................................................188.000.008.00------------------------------
..........................................................................TTGGACTCCAGCTTGTGT..............................................................................................................................................................183.000.003.00------------------------------
..........................................................................TTGGACTCCAGCTTGCGC..............................................................................................................................................................183.000.003.00------------------------------
...................................................................................................................................................................................................................AGTACGACGTCTCATCTGG....................1912.002.00---------------1.00-1.00-------------
..........................................................................TTGGACTCCAGCTTGTG...............................................................................................................................................................172.000.002.00------------------------------
..........................................................................TTGGACTCCAGCTTGTGGC.............................................................................................................................................................192.000.002.00------------------------------
..........................................................................TTGGACTCCAGCTTGAGCC.............................................................................................................................................................192.000.002.00------------------------------
..........................................................................TTGGACTCCAGCTTGAGG..............................................................................................................................................................182.000.002.00------------------------------
........................AATCACTTGAACCTGAGATGGG............................................................................................................................................................................................................221.000.00-----1.00-------------------------
.....................................................................................................................................................................................................................TACGACGTCTCATCTGGGAAAAGAATCTAAAG.....3211.001.00-----1.00-------------------------
......................................................................................................................................................................................................AGAATGAAGAAGCAGTACG.................................1911.001.00----------------1.00--------------
....................................................................................................................................................................................................................GTACGACGTCTCATCTGGGAAAAGAATC..........2811.001.00-------1.00-----------------------
...................................................................................AGCTTGGGTGACAGAGTGAGACTCCACCC..........................................................................................................................................291.000.00-1.00-----------------------------
..........................................................................TTGGACTCCAGCTTGGGA..............................................................................................................................................................181.000.001.00------------------------------
......................................................................................................................................................................................................AGAATGAAGAAGCAGGT...................................171.000.00--------------1.00----------------
.............TGAAGCAGGAGAATCAGTTT.........................................................................................................................................................................................................................201.000.00---------------------1.00---------
..........................................................................TTGGACTCCAGCTTGAGCA.............................................................................................................................................................191.000.001.00------------------------------
....................................................................................................................................................................................................................GTACGACGTCTCATCTGGGAAAAAA.............251.000.00----1.00--------------------------
...............................................................................................................................................................................................................AAGCAGTACGACGTCTCATCTGGG...................2411.001.00----1.00--------------------------
..........................................................................TTGGACTCCAGCTTGTTCC.............................................................................................................................................................191.000.001.00------------------------------
.....................................................................................................................................................................................................................TACGACGTCTCATCTGGGAAAAGA.............2411.001.00------------------1.00------------
....................................................................................................................................................................................................................GTACGACGTCTCATCTGGGAAAAGA.............2511.001.00--------1.00----------------------
.....................................................................................................................................................................................................................TACGACGTCTCATCTGGGAAA................2111.001.00--------------------1.00----------
.................................................................................................................................................................................................................GCAGTACGACGTCTCATCTGGGAAAAGAA............2911.001.00----1.00--------------------------
..........................................................................TTGGACTCCAGCTTGTGCA.............................................................................................................................................................191.000.001.00------------------------------
........................................................................................................................................................................................................AATGAAGAAGCAGTACGACG..............................2011.001.00-------------1.00-----------------
..........................................................................TTGGACTCCAGCTTGGGGC.............................................................................................................................................................191.000.001.00------------------------------
...................................CCTGAGAATCGGAGGGAC.....................................................................................................................................................................................................181.000.00----------1.00--------------------
..........................................................................TTGGACTCCAGCTTGTGA..............................................................................................................................................................181.000.001.00------------------------------
..........................................................................TTGGACTCCAGCTTGTGCT.............................................................................................................................................................191.000.001.00------------------------------
........................................................................................................................................................................................................AATGAAGAAGCAGTACGACGTCTC..........................2411.001.00-----------------------1.00-------
...........GTTGAAGCAGGAGAATCTGAA..........................................................................................................................................................................................................................211.000.00------------1.00------------------
..........................................................................TTGGACTCCAGCTTGTAG..............................................................................................................................................................181.000.001.00------------------------------
..........................................................................TTGGACTCCAGCTTGTC...............................................................................................................................................................171.000.001.00------------------------------
..........................................................................TTGGACTCCAGCTTGCGG..............................................................................................................................................................181.000.001.00------------------------------
.................................................................ATCGTGCCATTGGACTCCAGCGTG.................................................................................................................................................................241.000.00--1.00----------------------------
..........................................................................TTGGACTCCAGCTTGTGTC.............................................................................................................................................................191.000.001.00------------------------------
..............................................................................................................CTCAAAAAAAAAAAAAATTGCCATTTTCAT..............................................................................................................3011.001.00-------------------------1.00-----
.....................................................................................CTTGGGTGACAGAGTGAGACTCCATTCC.........................................................................................................................................281.000.00-1.00-----------------------------
.........................................................................................GGTGACAGAGTGAGACTCCATCCAGG.......................................................................................................................................261.000.00-1.00-----------------------------
.........................................AATCGGAGGTTGAAGTAA...............................................................................................................................................................................................1820.500.50---------------------------0.50---
...........................................................................................................................................TCATCAAACACTTATTT..............................................................................................1730.330.33----------------------------0.33--
....................................................................GTGCCATTGGACTCCAGCTTGGGT..............................................................................................................................................................2440.250.25--0.25----------------------------
.....................................................AAGTAAGCTGAGATCGTGC..................................................................................................................................................................................1950.200.20------------------------------0.20

Antisense strand
ATACTCGGAAGGTTGAAGCAGGAGAATCACTTGAACCTGAGAATCGGAGGTTGAAGTAAGCTGAGATCGTGCCATTGGACTCCAGCTTGGGTGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTGCCATTTTCATCATCAAACACTTATTTGTCCAGGATGCAGTATGACTATGTTCTTCTTCATTATGTTTTAGAATGAAGAAGCAGTACGACGTCTCATCTGGGAAAAGAATCTAAAGTTTGT
............................................................................((((.......((((((......(((((.....))))).........(((((....)))))..........))))))...))))..........................................................................................
.....................................................................70........................................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR189784SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR040035(GSM532920)
G001T. (cervix)
.......................................................................CCATTGGACTCCAGCTTAGC............................................................................................................................................................... 202.000.00-2.00-----------------------------
..................................................................................................................................................................................GTTCTTCTTCATTATCAAC..................................................... 192.000.00------2.00------------------------
.............................................................TGAGATCGTGCCATTCCAG.......................................................................................................................................................................... 192.000.00---2.00---------------------------
..................................................................................CAGCTTGGGTGACAGATCGC.................................................................................................................................................... 201.000.00----------------------1.00--------
..............................................................................................................CTCAAAAAAAAAAAAAATCCG....................................................................................................................... 211.000.00-1.00-----------------------------
................................................................................TCCAGCTTGGGTGACAGAGTGAGACTTCGC............................................................................................................................................ 301.000.00--1.00----------------------------
..................................................................................................................AAAAAAAAAAAAATTGCCATCTTC................................................................................................................ 241.000.00--1.00----------------------------
........AAGGTTGAAGCAGGAGATA............................................................................................................................................................................................................................... 191.000.00---------1.00---------------------
.....................................................................................GTCTCACTCTGTCACCCAAG................................................................................................................................................. 2001.001.00------------------------1.00------
.............TGAAGCAGGAGAATCACTTGAATCCC................................................................................................................................................................................................................... 261.000.00--------------------------1.00----
.....................................................................................................................AAAAAAAAAATTGCCATTTGTC............................................................................................................... 221.000.00-1.00-----------------------------
..............................................................................................................CTCAAAAAAAAAAAAAATTCCGG..................................................................................................................... 231.000.00--1.00----------------------------
................................................................................................................ATGGCAATTTTTTTTTTTTTTG.................................................................................................................... 2221.001.00--1.00----------------------------
................................................................................................................................................................................................................AGCAGTACGACGTCTCAGCG...................... 201.000.00-------------------1.00-----------
.........................................................AAGCTGAGATCGTGCCATTGG............................................................................................................................................................................ 211.000.00-1.00-----------------------------
.............................................................................................................................................................................ACTATGTTCTTCTTCAACAG......................................................... 201.000.00---1.00---------------------------
..............................................................................ACTCTGTCACCCAAGCTGGAGT...................................................................................................................................................... 2201.001.00-----------1.00-------------------
..............................................................................................................CTCAAAAAAAAAAAAAATTCAGG..................................................................................................................... 231.000.00--1.00----------------------------
........................................................................................................................TGAAAATGGCAATTTTTTT............................................................................................................... 1930.330.33-----------------------------0.33-
...................................................................................................................................................................................AACATAATGAAGAAGAA...................................................... 1770.140.14-------0.14-----------------------