ID: uc001etj.1_intron_4_0_chr1_149899187_r
GENE: (1)
chr1:149899137-149899667-


(2)
AGO2.ip 		(1)
AGO3.ip 		(6)
B-CELL 		(2)
BRAIN 		(8)
BREAST 		(26)
CELL-LINE 		(10)
CERVIX 		(2)
HEART 		(5)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
XRN.ip

Sense strand
CGGGATCTCTTTCGCCATGGCTGCCGGGCCGATCTCCGAGCGGAATCAGGGTAACTGGAGGGGGAAAGTCTGGAATGGGCTCAGCGTGGCTAGGAGGCCCCGACTACAGCCAGCAGTGTCTCTGCAGGGGTGGGAGACTGGACTCCTCCCTTCCCCAGAGGGCGCGAGACCGGCCCTCTGCCTGTTGGGGGCGGGGTGGCCGGGTGCTGGCTGAGGCCTCTGGGTGTGATACTTAAGTCCGGTCCCCTGCTGACTTCTCACTCAAAAAATCAAAAAAACCCACTCACAATACTAAATTAGACTTCAGAGGATTCCCGAAGTCCTGGGAAGAGAGAAGTTTAAGGGTTTAAACTTTTTTTTTTGCTCCTGTCCCCTACCGCGGTCCCCAGTTCCCCTGGTTGGGTTCCATCTTCATGTTTCCATCACTTCCTTCCTTCCCGTTACACTCTCACGCTTGCTCTTTTTGCTCCCTCCCTTCAAGATGCCACTGTGTACGTGGGGGGCCTGGATGAGAAGGTTAGTGAACCGCTG
.................................................................................................................................................................................................................................................................................................................................................................................................((((.....))))..(((...................................(((.........)))...((.......)).....)))........................................................
.............................................................................................................................................................................................................................................................................................................................................................................................382................................................................................................481................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040040(GSM532925)
G612N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040034(GSM532919)
G001N. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR037931(GSM510469)
293GFP. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040039(GSM532924)
G531T. (cervix)		TAX577589(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189785SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................................................................................................................................................................................................................GGGAAGAGAGAAGTTGTT.............................................................................................................................................................................................1823.000.00--9.00------4.005.00-3.00------------1.00--------------------------------1.00----------------------
.................................CTCCGAGCGGAATCAGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.005.00-----5.00---------------------------------------------------------------------------
...............................ATCTCCGAGCGGAATCAGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004.003.00--------------------------------------------1.00-----------------------------------
......................................AGCGGAATCAGGGTAACTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004.004.00--------------------------------------------------------------------------------
......CTCTTTCGCCATGGCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.004.00-------------3.00---------------------------------------1.00---------------------------
..........................................GAATCAGGGTAACTGGAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004.003.00--------------------------------1.00-----------------------------------------------
.........TTTCGCCATGGCTGCCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003.00-----3.00---------------------------------------------------------------------------
......................GCCGGGCCGATCTCCGAGCGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003.00-----------------3.00---------------------------------------------------------------
....................................................................TCTGGAATGGGCTCAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003.00-----------------------2.00----------------------1.00----------------------------------
.......................................................................................................................................................................................................................................................................................CCACTCACAATACTAAG...........................................................................................................................................................................................................................................173.000.00--------------3.00------------------------------------------------------------------
....ATCTCTTTCGCCATGGCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003.003.00--------------------------------------------------------------------------------
...GATCTCTTTCGCCATGGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00--------1.00-----------------------------------------------1.00------------------------
........................................................................................................................................................................................................CGGGTGCTGGCTGAGTAG.........................................................................................................................................................................................................................................................................................................................182.000.00--------------------2.00------------------------------------------------------------
..GGATCTCTTTCGCCATGGCTGCCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002.00-2.00-------------------------------------------------------------------------------
..................GGCTGCCGGGCCGATCTCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002.00-------------------1.00-------------------------------------------1.00-----------------
...........................................................GGGGGAAAGTCTGGAATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00-------2.00-------------------------------------------------------------------------
..................GGCTGCCGGGCCGATCTCCGAGCGGAATCAGGATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3612.001.00-2.00-------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................GGGAAGAGAGAAGTTGTTC............................................................................................................................................................................................192.000.00---------1.00--1.00--------------------------------------------------------------------
..................................TCCGAGCGGAATCAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00------------------2.00--------------------------------------------------------------
......CTCTTTCGCCATGGCTGCCGGGCCGATCTCCGAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3612.002.00-----------------------------------1.00----------------------------------1.00----------
.......................................................TGGAGGGGGAAAGTCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00----1.00----------1.00-----------------------------------------------------------------
.................................CTCCGAGCGGAATCAGGATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................212.000.00----------------2.00----------------------------------------------------------------
..................GGCTGCCGGGCCGATCTCCGAGCGGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002.00--------------------------2.00------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGGCCTGGATGAGAAGGTTAGCG........272.000.00-----------2.00---------------------------------------------------------------------
.......................................GCGGAATCAGGGTAACTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002.002.00--------------------------------------------------------------------------------
.......................................GCGGAATCAGGGTAACTGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002.00----2.00----------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACGTGGGGGGCCTGGATGAGAAG...............2612.002.00--------2.00------------------------------------------------------------------------
..................GGCTGCCGGGCCGATCTCCGAGCGGAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00-1.00-------------------------------------------------------------------------------
........................................................................................................................................................................................................CGGGTGCTGGCTGAGGCCTCTGGG...................................................................................................................................................................................................................................................................................................................2411.001.00----------------------------------------------------------------1.00----------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAGATGCCACTGGGC......................................191.000.00------------------------1.00--------------------------------------------------------
........................CGGGCCGATCTCCGAGCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------------------------------------1.00---------------------
.....TCTCTTTCGCCATGGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------------------------------1.00------------------
..................GGCTGCCGGGCCGATCTCCGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------1.00------------------------------------------------
......................................................CTGGAGGGGGAAAGTCTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00----1.00----------------------------------------------------------------------------
............................................................................................................................CAGGGGTGGGAGACTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------------------------------1.00-------------------------------------------
...................................CCGAGCGGAATCAGGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00----------------------------------1.00----------------------------------------------
....ATCTCTTTCGCCATGGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------1.00------------
.....TCTCTTTCGCCATGGCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------1.00--------------------------------------------------------------------------
................ATGGCTGCCGGGCCGATCTCCGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----1.00----------------------------------------------------------------------------
...................GCTGCCGGGCCGATCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00------1.00--------------------------------------------------------------------------
.............................................................................................................................................................................................GGCGGGGTGGCCGGGTGGGC..................................................................................................................................................................................................................................................................................................................................201.000.00-------------------------------------------------1.00-------------------------------
....ATCTCTTTCGCCATGGCTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------------------------1.00---------------------------------------
............................................................GGGGAAAGTCTGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------1.00------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGAGAAGGTTAGTGAAC.....2111.001.00-1.00-------------------------------------------------------------------------------
................................TCTCCGAGCGGAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00------------------------------------------------------------1.00--------------------
.........................................................................................................................................................................................................................................................................................................................................................................TGCTCCTGTCCCCTACCGCGGTCCCC................................................................................................................................................2611.001.00---1.00-----------------------------------------------------------------------------
....................CTGCCGGGCCGATCTCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.001.00--------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................ACTTTTTTTTTTGCTCTTC..................................................................................................................................................................191.000.00---1.00-----------------------------------------------------------------------------
...................GCTGCCGGGCCGATCTCCGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------------------------------1.00------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................ACTTTTTTTTTTGCTCCG...................................................................................................................................................................181.000.00-----------------------------1.00---------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................CTTTTTTTTTTGCTCGG...................................................................................................................................................................171.000.00---1.00-----------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTTAGTGAACCGCTG1811.001.00-------------------------------------------------------1.00-------------------------
........................................CGGAATCAGGGTAACTGGAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00------------------------------------------1.00--------------------------------------
..........................................................................................................................................................................................GGGGGCGGGGTGGCCACA.......................................................................................................................................................................................................................................................................................................................................181.000.00-------------------------1.00-------------------------------------------------------
....................................................................................................................................................................................................................................................................................................TAAATTAGACTTCAGAGGA............................................................................................................................................................................................................................1911.001.00----1.00----------------------------------------------------------------------------
......................GCCGGGCCGATCTCCGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------------------------------------------1.00-------------
....ATCTCTTTCGCCATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00---------------------------------------1.00-----------------------------------------
..........TTCGCCATGGCTGCCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------1.00--------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................ACTTTTTTTTTTGCTCTTTC.................................................................................................................................................................201.000.00---1.00-----------------------------------------------------------------------------
..GGATCTCTTTCGCCATGGCTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00------1.00--------------------------------------------------------------------------
.......................CCGGGCCGATCTCCGAGCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00------------------------------------------------------1.00--------------------------
...........................GCCGATCTCCGAGCGGAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------------------------1.00------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATGAGAAGGTTAGTG........2011.001.00-------------------------------------------1.00-------------------------------------
..............................................CAGGGTAACTGGAGGGGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.001.00--------------------------------------------------------------------------------
....ATCTCTTTCGCCATGGCTGCCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-1.00-------------------------------------------------------------------------------
.........................................GGAATCAGGGTAACTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----1.00----------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGGGCCTGGATGAGAAGGTT............2411.001.00----------------------------------------------------1.00----------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGGGGGGCCTGGATGAGAAGGTCAG..........291.000.00---1.00-----------------------------------------------------------------------------
...................................................................................................................................................................................................................TGAGGCCTCTGGGTGCT...............................................................................................................................................................................................................................................................................................................171.000.00----------------------1.00----------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTTGCTCTTTTTTTT...............................................................181.000.00---1.00-----------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................AAACTTTTTTTTTTGCCTGG...................................................................................................................................................................201.000.00---1.00-----------------------------------------------------------------------------
..................GGCTGCCGGGCCGATCTCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------------------1.00----------------------------------------
............................................................GGGGAAAGTCTGGAATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----1.00----------------------------------------------------------------------------
...............................................AGGGTAACTGGAGGGGGAAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------1.00----------------------------------------------------
...GATCTCTTTCGCCATGGCTGCCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-1.00-------------------------------------------------------------------------------
....................CTGCCGGGCCGATCTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------1.00-----------------------------------------------------------
.................................CTCCGAGCGGAATCAGGGTAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.001.00--------------------------------------------------------------------------------
.......................................GCGGAATCAGGGTAACTGGAGGGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00----------------------------1.00----------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGAGAAGGTTAGTGAACT....2211.001.00-------------------------------------------------------------1.00-------------------
.....TCTCTTTCGCCATGGCTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------1.00--------------------------------------------------------------------------
........CTTTCGCCATGGCTGCCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.001.00--------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................CTTTTTTTTTTGCTCACGC.................................................................................................................................................................191.000.00-----------------------------1.00---------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGGGCCTGGATGAGAAGG..............2211.001.00---------------------------------------------------------------------1.00-----------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTTCAAGATGCGCT...........................................181.000.00------------------------1.00--------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCCTGGATGAGAAGGTTA...........2111.001.00----------------1.00----------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................AACTTTTTTTTTTGCTCCTTTCC...............................................................................................................................................................231.000.00-----------1.00---------------------------------------------------------------------
...GATCTCTTTCGCCATGGCTGCCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-1.00-------------------------------------------------------------------------------
..........TTCGCCATGGCTGCCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00------1.00--------------------------------------------------------------------------
.............GCCATGGCTGCCGGGCCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------------------------------------1.00--------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGGGGGCCTGGATGAGAAGGC.............241.000.00-----------1.00---------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGGGGGGCCTGGATGAGAAGGTTAGTGAAC.....3311.001.00-1.00-------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGGGCCTGGATGAAAAA...............211.000.00--------------------------------------------1.00------------------------------------
............CGCCATGGCTGCCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1730.670.67------0.67--------------------------------------------------------------------------
...........TCGCCATGGCTGCCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50-------------0.50-------------------------------------------------------------------
..........................GGCCGATCTCCGAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50------------------------------------------------------------------------0.50--------
...............................................................................CTCAGCGTGGCTAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50----0.50----------------------------------------------------------------------------

Antisense strand
CGGGATCTCTTTCGCCATGGCTGCCGGGCCGATCTCCGAGCGGAATCAGGGTAACTGGAGGGGGAAAGTCTGGAATGGGCTCAGCGTGGCTAGGAGGCCCCGACTACAGCCAGCAGTGTCTCTGCAGGGGTGGGAGACTGGACTCCTCCCTTCCCCAGAGGGCGCGAGACCGGCCCTCTGCCTGTTGGGGGCGGGGTGGCCGGGTGCTGGCTGAGGCCTCTGGGTGTGATACTTAAGTCCGGTCCCCTGCTGACTTCTCACTCAAAAAATCAAAAAAACCCACTCACAATACTAAATTAGACTTCAGAGGATTCCCGAAGTCCTGGGAAGAGAGAAGTTTAAGGGTTTAAACTTTTTTTTTTGCTCCTGTCCCCTACCGCGGTCCCCAGTTCCCCTGGTTGGGTTCCATCTTCATGTTTCCATCACTTCCTTCCTTCCCGTTACACTCTCACGCTTGCTCTTTTTGCTCCCTCCCTTCAAGATGCCACTGTGTACGTGGGGGGCCTGGATGAGAAGGTTAGTGAACCGCTG
.................................................................................................................................................................................................................................................................................................................................................................................................((((.....))))..(((...................................(((.........)))...((.......)).....)))........................................................
.............................................................................................................................................................................................................................................................................................................................................................................................382................................................................................................481................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040040(GSM532925)
G612N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040034(GSM532919)
G001N. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR037931(GSM510469)
293GFP. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040039(GSM532924)
G531T. (cervix)		TAX577589(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189785SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................................................................................................................................................................................................................GGAGCAAAAAAAAAA.................................................................................................................................................................... 1504.004.00--------1.00------2.00-----1.00-----------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................GGGGAACTGGGGACCGCGGTA........................................................................................................................................ 2113.003.00-------3.00-------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................CCCTTAAACTTCTCTCTTCCCAGG.......................................................................................................................................................................................... 2411.001.00-----------------------------------------------1.00---------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCCCTGGTTGGCTG.............................................................................................................................. 181.000.00------------------------------1.00--------------------------------------------------
..............................................................................................CTGCTGGCTGTAGTCGGGGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................... 2211.001.00------------------------------------------------1.00--------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTCCATCTTCATTAT................................................................................................................. 181.000.00---------------------------1.00-----------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTCCATCTTCATTCTA................................................................................................................ 191.000.00---------------------------1.00-----------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................ACATGAAGATGGAACCCA.................................................................................................................. 1811.001.00---------------------------------------------------------1.00-----------------------
......................CTCGGAGATCGGCCCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1811.001.00-------------------1.00-------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTCTTTTTGCTAATG........................................................... 191.000.00------------------------------------------------------------------1.00--------------
.......................................................................................................................................................................................................................................................................AAAAAATCAAAAAAACCTG......................................................................................................................................................................................................................................................... 191.000.00-------------------------------1.00-------------------------------------------------
....................................................................................................................................................................................................................................................................CTCAAAAAATCAAAAAGAG............................................................................................................................................................................................................................................................ 191.000.00----------------------1.00----------------------------------------------------------
.......................................................................................................................................................................................................................................GTCAGCAGGGGACCGGACTTAAG..................................................................................................................................................................................................................................................................................... 2311.001.00-----------------------------------------------------------------1.00---------------
.............GGCCCGGCAGCCATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1721.001.00-----------------------------------------------------------------------0.50--0.50------
..........................................................................................................................................................................................................................................................................AAATCAAAAAAACCCACT....................................................................................................................................................................................................................................................... 181.000.00---1.00-----------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGCTCCCTCCCTTT..................................................... 181.000.00---------------------------------------------------1.00-----------------------------
...................................................................................................................................................................................................................................................................ACTCAAAAAATCAAAATTAA............................................................................................................................................................................................................................................................ 201.000.00---1.00-----------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTGATGGAAACATG.................................................................................................... 1920.500.50-------------------------------------------------------------------------0.50-------
.............GCCCGGCAGCCATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1650.400.40----------------------------------------------------------------------------0.200.20---
............GCCCGGCAGCCATGGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1730.330.33---------------------------------------------------------------------------0.33-----
.........................................................................................................................................................................................................................................................................TGGGTTTTTTTGATTTT......................................................................................................................................................................................................................................................... 1740.250.25-----------0.25---------------------------------------------------------------------
............................................................................................................................................................................CCAACAGGCAGAGGGC....................................................................................................................................................................................................................................................................................................................................................... 1650.200.20------------------------------0.20--------------------------------------------------
...........................................................................................................................................................................................CCCGGCCACCCCGCCCC....................................................................................................................................................................................................................................................................................................................................... 1770.140.14------------------------------------------------------------------------------0.14--
.............................................................................................................................................................................................................................................................................................................GGGAATCCTCTGAAG....................................................................................................................................................................................................................... 1580.120.12--------------------------------------------------------------------------------0.12
..................................................................................................................................................................................................................................................................................................................................ACTTCTCTCTTCCCAG................................................................................................................................................................................................. 1680.120.12-------------------------------------------------------------------------------0.12-