ID: uc001end.3_intron_33_0_chr1_145327666_f.3p
GENE: (34)
chr1:145328175-145328424+


(11)
B-CELL 		(5)
BRAIN 		(12)
BREAST 		(22)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(12)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(18)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGGGATATTTCACCCTTGGTTCTGATATGCAAACCAAGGAATATCATGACCAGCTTTCAGGCCTCCTGAAGTATATCTCTCACATTGTCCTGTTCTCATGCTGAGGAGTCTGAGATCCCTGTGTGGGGATTAGACAGTGGACTGTTATGGGTGTAGGTGAATTGGCTTATTTTGTCTGTCCCTGTCTGAATGTATTGCAGGAATTAAAAAGGACCAAGAAGAGGAAGAAGACGAAGACCAAGACCCACCA
...................................................................................................................(((((....)))))((((((((.((((..........((((((......)))))).......)))))))))))).............................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532888(GSM532888)
G761T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM532883(GSM532883)
G871N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191517(GSM715627)
75genomic small RNA (size selected RNA from t. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR343334SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)
............................................................................................................................GGGGATTAGACAGTGGACTGTTATGGGTGTAGGTGAATTGGCTTATTTTGTCTGTCCCTGTCTGAATGTATTGCAGTTT...............................................7915.000.00--15.00------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGATC........................205.000.00------5.00--------------------------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGAT........................254.000.00-4.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAT.....................244.000.00--------------4.00------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGT...................264.000.00-2.00--1.00----------------------------------------------------1.00-----------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGACGAAGA.............2514.004.00----------1.00-----1.00--------------------------------------------------1.00-1.00-----------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGT......................234.000.004.00--------------------------------------------------------------------------------------------
.........................................................................................................................TGTGGGGATTAGACAGTGGACTGTTATGGGTGTAGGTGAATTGGCTTATTTTGTCTGTCCCTGTCTGAATGTATTGCAGA.................................................803.000.00---------------------3.00-----------------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGATT.......................253.000.00----2.00-----1.00----------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CCAAGAAGAGGAAGAAGACGAAGA.............2413.003.00-------------------------------------------1.00-----------------1.00------------1.00------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGATA.................243.000.001.00--1.00-1.00---------------------------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGATT.......................263.000.00-3.00-------------------------------------------------------------------------------------------
.........................................................................................................................................TGGACTGTTATGGGTGTAGGTGAATTCTG....................................................................................292.000.00-------------------2.00-------------------------------------------------------------------------
......................................................................................................................................CAGTGGACTGTTATGGGTGTAGGTGAATTCTG....................................................................................322.000.00-----------------2.00---------------------------------------------------------------------------
........................................................................................................................GTGTGGGGATTAGACAGTGGAA............................................................................................................222.000.00---------2.00-----------------------------------------------------------------------------------
..................................................................................................................................................................................TCCCTGTCTGAATGTATTGCAGA.................................................232.000.00----1.00---------------------------------------------------1.00------------------------------------
...........................................................................................................................TGGGGATTAGACAGTGGACTGTTACGG....................................................................................................272.000.00----------------------2.00----------------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGATTT......................262.000.00---------------1.00-------------------------------------------------1.00---------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGATC........................242.000.00------2.00--------------------------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGAA..................262.000.00-----2.00---------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGATT.......................222.000.00-1.00---------1.00---------------------------------------------------------------------------------
...............................................................................................................GAGATCCCTGTGTGGGGATTAGACAGTAGA.............................................................................................................302.000.00-------------------1.00-----1.00-------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGATA.................282.000.00---1.00---1.00-------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGTA.....................242.000.00-1.00----------1.00--------------------------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGAAGAT.....................272.000.00----------1.00--1.00-------------------------------------------------------------------------------
..............................................................................................................................................TGTTATGGGTGTAGGTGAATTTGCT...................................................................................252.000.00----------------------------1.001.00---------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAATA...................232.000.00---1.00-1.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGTT..................202.000.00----2.00----------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGT...................192.000.00----------1.00----------------------------------------1.00-----------------------------------------
...........................................................................................................................................GACTGTTATGGGTGTAGGG............................................................................................192.000.00------------1.00----------------1.00---------------------------------------------------------------
.......................................................................................................................................AGTGGACTGTTATGGGTGTAGGTGT..........................................................................................252.000.00---------2.00-----------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGACAT......................202.000.00--------------------------------------1.00-------------------------------1.00----------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGACA.................261.000.00---------------------------------1.00-----------------------------------------------------------
..........................................................................................................................................................................................................................AAGAGGAAGAAGACGAAGGCG...........211.000.00-------------------------------1.00-------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGAAGAAGACA.................321.000.00--------------------------------------------------------------1.00------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAATAA..................271.000.00--------------------------1.00------------------------------------------------------------------
...........................................................................................................................................................................................................................AGAGGAAGAAGACGAAGACCAAGA.......2411.001.00---1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................................TTGTCTGTCCCTGTCTGAATGTATTGCAAA.................................................301.000.00---------------------------------1.00-----------------------------------------------------------
.....................................................................................................................................................................................................................CCAAGAAGAGGAAGAAGATC.................201.000.00------------------------------------------------------------------------1.00--------------------
........................................................................................................................................GTGGACTGTTATGGGTGTATG.............................................................................................211.000.00----------------------------------------------------1.00----------------------------------------
..................................................................................................................................................ATGGGTGTAGGTGAATTGGTTTA.................................................................................231.000.00------------1.00--------------------------------------------------------------------------------
..............................................................................................................................................................................TCTGTCCCTGTCTGAATGTATTGCAGGCTTC.............................................311.000.00----------------------1.00----------------------------------------------------------------------
.......................................................................................................................................AGTGGACTGTTATGGGTGTAGGGG...........................................................................................241.000.00---1.00-----------------------------------------------------------------------------------------
...............................................................................................................................................GTTATGGGTGTAGGTGAATTGGGT...................................................................................241.000.00----------------------------1.00----------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGATTT......................271.000.00----------1.00----------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGATT....................221.000.001.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACAAAA..............271.000.00-----------------------------------1.00---------------------------------------------------------
........................................................................................................................................................................................................................AGAAGAGGAAGAAGACGAAGGC............221.000.001.00--------------------------------------------------------------------------------------------
....................................................................................................................CCCTGTGTGGGGATTAGAGAGT................................................................................................................221.000.00-----1.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGACGAAG..............2411.001.00----------------------------------------------------------1.00----------------------------------
...................................................................................................................................................TGGGTGTAGGTGAATTGGAAA..................................................................................211.000.00---------------------------1.00-----------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGAAC.................241.000.001.00--------------------------------------------------------------------------------------------
................................................................................CACATTGTCCTGTTCTCATA......................................................................................................................................................201.000.00-------------------------------------1.00-------------------------------------------------------
........................................................................................................................................................................ATTTTGTCTGTCCCTGTCTGAATGTATTTCAG..................................................321.000.00------------------------------------------------------------------------------1.00--------------
............................................................................................................................................................................................................TAAAAAGGACCAAGAAGT............................181.000.00--------------------1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................AAGAGGAAGAAGACGAAGGCAG..........221.000.00--------1.00------------------------------------------------------------------------------------
.......................................................................................................................................AGTGGACTGTTATGGGTGTAGGGGAA.........................................................................................261.000.00-----1.00---------------------------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGAAGTT.....................281.000.00--------------------------1.00------------------------------------------------------------------
.....................................................................................................................................................................................CTGTCTGAATGTATTGCAA..................................................191.000.00-----------------------1.00---------------------------------------------------------------------
...................................................................................................................................................TGGGTGTAGGTGAATTGGCATA.................................................................................221.000.00---------------1.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAGGAA.....................221.000.00-----------------------------------------------1.00---------------------------------------------
...................................................................................................................................................................................CCCTGTCTGAATGTATTGCAGA.................................................221.000.00-------------------------------------------------------1.00-------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGAAGAAGACT.................311.000.00----1.00----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AAGAAGAGGAAGAAGACGAAGATA...........241.000.00-------1.00-------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAT........................211.000.00----------------------------------------------------------------1.00----------------------------
............................................................................................................................................................................................................................GAGGAAGAAGACGAAGACCAAGACC.....2511.001.00-----1.00---------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGATA.................261.000.001.00--------------------------------------------------------------------------------------------
..................................................................................................................................TAGACAGTGGACTGTTATGGGGGTA...............................................................................................251.000.00----------------------------------1.00----------------------------------------------------------
.......................................................................................................................................................................TATTTTGTCTGTCCCTGTCGAA.............................................................221.000.00------------------------------------1.00--------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGAAAA................251.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................................TTATGGGTGTAGGTGAATTGAC....................................................................................221.000.00------------------------------------------------------------------1.00--------------------------
.......................................................................................................................................................................................................................................CGAAGACCAAGACCCATCA191.000.00---------------------------------------1.00-----------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGACA.................251.000.00----1.00----------------------------------------------------------------------------------------
............................................................................................................................GGGGATTAGACAGTGGACTGTTATGGGCGTA...............................................................................................311.000.00------------------1.00--------------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGT......................221.000.00---------------1.00-----------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGATT.......................181.000.00-----------1.00---------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGTT..................271.000.00----1.00----------------------------------------------------------------------------------------
..............................................................................................................................GGATTAGACAGTGGACTGTTACGGG...................................................................................................251.000.00--------------------------------------------------1.00------------------------------------------
.......................................................................................................................................................................................................................AAGAAGAGGAAGAAGACGAAGACCAAGAC......2911.001.00---1.00-----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGAAGAA...............261.000.001.00--------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGATC.................281.000.00-----1.00---------------------------------------------------------------------------------------
.........................................................................................................................TGTGGGGATTAGACAGTGGACCG..........................................................................................................231.000.00--------1.00------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACATC...............261.000.00------1.00--------------------------------------------------------------------------------------
..............................................................................................CTCATGCTGAGGAGTCTGA.........................................................................................................................................1911.001.00----------------------------------------------------------------------------1.00----------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGAA..................271.000.00-------------1.00-------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CCAAGAAGAGGAAGAAGATG.................201.000.00----------------------------------1.00----------------------------------------------------------
...........................................................................................................................................GACTGTTATGGGTGTAGGTGAATTGGCTTCTT...............................................................................321.000.00------------------1.00--------------------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGAAGAAGAT..................301.000.00-------------1.00-------------------------------------------------------------------------------
...........................................................................................................................TGGGGATTAGACAGTGGACTGTTATT.....................................................................................................261.000.00--------------------------------------------------------------------------------1.00------------
...........................................................................................................................................................................................GAATGTATTGCAGGAATTAAAAAAA......................................251.000.00----------------------------------------1.00----------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGACGAAGA.............2911.001.00--------------------------------1.00------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGATA....................221.000.00-1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAA....................251.000.00------------------------1.00--------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGT...................241.000.00----------------1.00----------------------------------------------------------------------------
...................................................................................................................................................................................CCCTGTCTGAATGTATTGCAGAA................................................231.000.00------------------------------------------1.00--------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGATA....................231.000.00-------1.00-------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AAGAAGAGGAAGAAGACGGGGA.............221.000.00--------1.00------------------------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGT...................251.000.00-----1.00---------------------------------------------------------------------------------------
.........................................................................................................................................TGGACTGTTATGGGTGGAGG.............................................................................................201.000.00--------------------1.00------------------------------------------------------------------------
............................................................................................................................................................................................................TAAAAAGGACCAAGAAGGGG..........................201.000.00---1.00-----------------------------------------------------------------------------------------
..................................................................................................................................................................................................................GGACCAAGAAGAGGAAGAAGACAA................241.000.001.00--------------------------------------------------------------------------------------------
............................................................................................................................GGGGATTAGACAGTGGACTGTTATGGGGGCA...............................................................................................311.000.00------------------1.00--------------------------------------------------------------------------
...................................................................................................................................AGACAGTGGACTGTTACGGG...................................................................................................201.000.00-------------------------1.00-------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGACGAAGACC...........3211.001.00-----------------------------------------1.00---------------------------------------------------
....................TCTGATATGCAAACCAAGGA..................................................................................................................................................................................................................2011.001.00-------------------------------------------------1.00-------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAATT...................261.000.00-------1.00-------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACA.................241.000.001.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TTAAAAAGGACCAAGAAGAGGAAGGG.....................261.000.001.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGAACA................251.000.001.00--------------------------------------------------------------------------------------------
....................................................................................................................................GACAGTGGACTGTTATGGGTGTAGAAA...........................................................................................271.000.00-----------------------------------------------------------------------------1.00---------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGAA..................251.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAAA...................231.000.00-1.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAA....................211.000.00---------------------------1.00-----------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGAT........................241.000.00----------------------------------------------1.00----------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGACT.................251.000.00-----------1.00---------------------------------------------------------------------------------
............................................................................................................................................................................................................................GAGGAAGAAGACGAAGAGCCA.........211.000.001.00--------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGATT.......................211.000.00---1.00-----------------------------------------------------------------------------------------
........................................................................................................................................GTGGACTGTTATGGGTGC................................................................................................181.000.00------------1.00--------------------------------------------------------------------------------
...............................................................................................................................................GTTATGGGTGTAGGTGAATTGGA....................................................................................231.000.00---------1.00-----------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGATT.......................191.000.00-------1.00-------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAACA...................191.000.00-----------------------------------------------------1.00---------------------------------------
........................................................................................................................................GTGGACTGTTATGGGTGA................................................................................................181.000.00------------------------------------------------------------------------------------1.00--------
........................................................................................................................................................................................................................AGAAGAGGAAGAAGACGAAGACC...........2311.001.00-----1.00---------------------------------------------------------------------------------------
.............................................ATGACCAGCTTTCAGGCCCCTG.......................................................................................................................................................................................221.000.00--------1.00------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGAAC.................261.000.00---1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TTAAAAAGGACCAAGAAGAGGAAGAAGAG..................291.000.001.00--------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGAAGT......................271.000.00----------------1.00----------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACGAA...............2611.001.001.00--------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................CAAGAAGAGGAAGAAGACGAAGACCA..........2611.001.00-------1.00-------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACAA................251.000.001.00--------------------------------------------------------------------------------------------
.............................................................................................................................GGGATTAGACAGTGGACTGTTATGGGTGTAGGAAAA.........................................................................................361.000.00-------------------------------------------------------------------------------1.00-------------
....................................................................................................................................GACAGTGGACTGTTACGG....................................................................................................181.000.00-------------------------------1.00-------------------------------------------------------------
.....................................................................................................................................................................................................................CCAAGAAGAGGAAGAAGACGGTA..............231.000.00---------------------------------------------1.00-----------------------------------------------
...........................................................................................................................................................................................................TTAAAAAGGACCAAGAAAA............................191.000.00------------------------------------------------------1.00--------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGATCA................281.000.00---1.00-----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGATT....................211.000.00-----------1.00---------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGTTT....................251.000.00----1.00----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AAGAAGAGGAAGAAGACGAAGACA...........2421.000.50-------1.00-------------------------------------------------------------------------------------
......................................................................................................................................................................................TGTCTGAATGTATTGTAG..................................................181.000.00--------------------------------------------1.00------------------------------------------------
.................................................................................................................................TTAGACAGTGGACTGTTACGGG...................................................................................................221.000.00-------------------------------------------------------------------------1.00-------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGATCA................261.000.001.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGAAGATTT...................291.000.00-------------1.00-------------------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGAAGAT.....................281.000.00------------------------1.00--------------------------------------------------------------------
................................................................................................................................................................................................................................AAGAAGACGAAGACCAA.........1711.001.00-----------------------------------------------------------------------------------1.00---------
...............................................................................................................................................................................CTGTCCCTGTCTGAATGTATTGA....................................................231.000.00------------------------------------------------------------1.00--------------------------------
......................................................................................................................................CAGTGGACTGTTATGGTG..................................................................................................181.000.00-----------------1.00---------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGAGCA................251.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAC....................221.000.00-----------------------------------------------------------1.00---------------------------------
............................................................................................................................................................................................................TAAAAAGGACCAAGAAGAGGAAGAAGT...................271.000.00----1.00----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GAAGAGGAAGAAGACGAAGACCAAG........2511.001.00-1.00-------------------------------------------------------------------------------------------
...........................................................................................................................TGGGGATTAGACAGTGGACTGTC........................................................................................................231.000.00--------1.00------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAATA...................261.000.00-1.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGATC.................241.000.00-----1.00---------------------------------------------------------------------------------------
...........................................................................................................................TGGGGATTAGACAGTGGACTGCTA.......................................................................................................241.000.00--------------------------------------------------------------------1.00------------------------
.............................................................................................................................................................................................................................AGGAAGAAGACGAAGACCAAGACCCACCA2911.001.00---------------------------------------------------------------------------------1.00-----------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGACG.................2511.001.00-----------------------------------------------------------------------1.00---------------------
...............................................................................................................................................................................CTGTCCCTGTCTGAAAAAA........................................................191.000.00---------------------------------------------------------------------------1.00-----------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGC.........................201.000.00---------------------------------------------------------------------------------------1.00-----
.....................................................................................................................................ACAGTGGACTGTTATGGGTGTAGAA............................................................................................251.000.00-----------------------1.00---------------------------------------------------------------------
........................................................................................................................................................................................................GAATTAAAAAGGACCAAGAAA.............................211.000.00------------------------------------------------1.00--------------------------------------------
.........................................................................................................................................TGGACTGTTATGGGTGTAGGC............................................................................................211.000.00--------------------------------1.00------------------------------------------------------------
...........................................................................................................................TGGGGATTAGACAGTGGACTGTTATGAAA..................................................................................................291.000.00--------------------1.00------------------------------------------------------------------------
.......................................................................................................................................AGTGGACTGTTATGGGC..................................................................................................171.000.00----------------------------------------------------------------------------------1.00----------
....................................................................................................................................................GGGTGTAGGTGAATTTTT....................................................................................181.000.00--------------------------------------------------------------------------------------1.00------
.............................................................................................................................................................................GTCTGTCCCTGTCTGAATGTATTTCAG..................................................271.000.00-------------------------------------------------------------------------------------1.00-------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGACGAAGAC............2611.001.00---1.00-----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................GAAGACCAAGACCCACC.1720.500.50-----------------------------------0.50---------------------------------------------------------
.......................................................................................................................................................................................................................AAGAAGAGGAAGAAGACGAAGAC............2320.500.50---0.50-----------------------------------------------------------------------------------------
.................................................................................................ATGCTGAGGAGTCTGA.........................................................................................................................................1630.330.33-------------------------------------------------------------------------------------------0.33-
........................................................................................................................................................................................................................AGAAGAGGAAGAAGACGAAGA.............2130.330.33---0.33-----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AAGAAGAGGAAGAAGACGAA...............2030.330.33---0.33-----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................ACGAAGACCAAGACCC....1630.330.33------------------------------------------------------------------------------------------0.33--
.......................................................................................................................................................................................................................AAGAAGAGGAAGAAGACGA................1950.200.200.20--------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................AGAAGAGGAAGAAGACGA................1870.140.14--------------------------------------------------------------------------------------------0.14

Antisense strand
GGGGATATTTCACCCTTGGTTCTGATATGCAAACCAAGGAATATCATGACCAGCTTTCAGGCCTCCTGAAGTATATCTCTCACATTGTCCTGTTCTCATGCTGAGGAGTCTGAGATCCCTGTGTGGGGATTAGACAGTGGACTGTTATGGGTGTAGGTGAATTGGCTTATTTTGTCTGTCCCTGTCTGAATGTATTGCAGGAATTAAAAAGGACCAAGAAGAGGAAGAAGACGAAGACCAAGACCCACCA
...................................................................................................................(((((....)))))((((((((.((((..........((((((......)))))).......)))))))))))).............................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532888(GSM532888)
G761T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM532883(GSM532883)
G871N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191517(GSM715627)
75genomic small RNA (size selected RNA from t. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR343334SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)
..................GTTCTGATATGCAAAGTAA..................................................................................................................................................................................................................... 192.000.00------------------------------2.00--------------------------------------------------------------
..................GTTCTGATATGCAAAGGA...................................................................................................................................................................................................................... 181.000.00---------------------------------------------------------------1.00-----------------------------
..................GTTCTGATATGCAAACGGA..................................................................................................................................................................................................................... 191.000.00------------------------------------0.50----------------------------------------------------0.50---
..................GTTTGCATATCAGAAC........................................................................................................................................................................................................................ 1620.500.50----------------------------------------------------------------------------------------0.50----
............................................................................................................................................................................................................................TCTTCGTCTTCTTCCTC............. 1770.140.14------0.14--------------------------------------------------------------------------------------