ID: uc001ejp.3_intron_2_0_chr1_143664197_r.3p
GENE: LOC100286793(1)
chr1:143664147-143664396-


(1)
BRAIN
(3)
BREAST
(9)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(1)
OTHER
(1)
OVARY
(2)
SKIN
(1)
XRN.ip

Sense strand
GGTTCTCAAGGGACTAAAAGCTAAAGGCGACGACGGCCCCGGGAGGTCGAGGCTGCAGTGAGCCGTGTTTGCACCACTGCACTCCAGCCTGGGCGACCAAGCGAGACCCTGTCTCAAAAACAAACAAAACAAACAAACAAACAACAAAAAGCAAATCAAAAGTTCCCCATGGTAAAATATTTCATGATTTCCATTTTCAGGGCTCTTCAAAGGCCTAAAAGCTAAAGGCGAGGATGGATTAATTCAACAA
..................................................(((((.((((((..(((....)))..)).)))).))))).((....))....(((((...))))).......................................................................................................................................
..................................................51........................................................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM379268(GSM379268)
Small RNA from serous ovarian cancer tissue. (ovary)
SRR189786SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787GSM532930(GSM532930)
G702T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189785TAX577590(Rovira)
total RNA. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR040006(GSM532891)
G601N. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR343335SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
....................................................CTGCAGTGAGCCGTGTAGGG..................................................................................................................................................................................2065.000.00-65.00--------------------------
........................................................................................................................................................AAATCAAAAGTTCCCTGGT...............................................................................195.000.00---3.00------------1.00--------1.00--
.......................................CGGGAGGTCGAGGCTGCAGTGAGGTG.........................................................................................................................................................................................261.000.00-------1.00--------------------
...........................................AGGTCGAGGCTGCAGTGAGCCGTGTCTT...................................................................................................................................................................................281.000.00--1.00-------------------------
..............................................................CCGTGTTTGCACCACTGCACTCCAGCCGGG..............................................................................................................................................................301.000.00--------1.00-------------------
.....................................CCCGGGAGGTCGAGGCTGCAG................................................................................................................................................................................................2101.001.00----1.00-----------------------
...........................................AGGTCGAGGCTGCAGTGAGCCGGCA......................................................................................................................................................................................251.000.00--1.00-------------------------
..........................................................................................................CCCTGTCTCAAAAACAAACAAAATTAG.....................................................................................................................271.000.00------------------------1.00---
..............................................TCGAGGCTGCAGTGAGCCGTGTCCGC..................................................................................................................................................................................261.000.00--1.00-------------------------
.............................................................................................................................................................................................................................CTAAAGGCGAGGATGTGC...........181.000.00------------------1.00---------
...........................................AGGTCGAGGCTGCAGTCAAG...........................................................................................................................................................................................201.000.00-------1.00--------------------
......................................................................................................................AACAAACAAAACAAACAAACAAGA............................................................................................................241.000.00------1.00---------------------
................................................................................ACTCCAGCCTGGGCGACCCATC....................................................................................................................................................221.000.001.00---------------------------
...........................................AGGTCGAGGCTGCAGTGAGCGTG........................................................................................................................................................................................231.000.001.00---------------------------
...............................................CGAGGCTGCAGTGAGCGAGG.......................................................................................................................................................................................201.000.00--1.00-------------------------
..........................................GAGGTCGAGGCTGCAGTGACC...........................................................................................................................................................................................211.000.00----1.00-----------------------
...........................................AGGTCGAGGCTGCAGTGAGCCGGC.......................................................................................................................................................................................241.000.001.00---------------------------
....................................................................................................................AAAACAAACAAAACAAACAAACACAGA...........................................................................................................271.000.00--------------1.00-------------
...........................................AGGTCGAGGCTGCAGTGAGCCGTGGA.....................................................................................................................................................................................261.000.00--------------------------1.00-
........................................GGGAGGTCGAGGCTGCAGTGAGGTC.........................................................................................................................................................................................251.000.00---------1.00------------------
....................................................CTGCAGTGAGCCGTGTAGAG..................................................................................................................................................................................201.000.00-1.00--------------------------
..................................................................................................AAGCGAGACCCTGTCTCCGG....................................................................................................................................201.000.00-------------1.00--------------
...........................................AGGTCGAGGCTGCAGTGAT............................................................................................................................................................................................191.000.00----1.00-----------------------
........................................................................................................................................................AAATCAAAAGTTCCCTGGA...............................................................................191.000.00---1.00------------------------
......................................CCGGGAGGTCGAGGCTGCAGAGG.............................................................................................................................................................................................231.000.001.00---------------------------
............................................................................................GCGACCAAGCGAGACCCTG...........................................................................................................................................1930.330.33---------------------------0.33

Antisense strand
GGTTCTCAAGGGACTAAAAGCTAAAGGCGACGACGGCCCCGGGAGGTCGAGGCTGCAGTGAGCCGTGTTTGCACCACTGCACTCCAGCCTGGGCGACCAAGCGAGACCCTGTCTCAAAAACAAACAAAACAAACAAACAAACAACAAAAAGCAAATCAAAAGTTCCCCATGGTAAAATATTTCATGATTTCCATTTTCAGGGCTCTTCAAAGGCCTAAAAGCTAAAGGCGAGGATGGATTAATTCAACAA
..................................................(((((.((((((..(((....)))..)).)))).))))).((....))....(((((...))))).......................................................................................................................................
..................................................51........................................................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM379268(GSM379268)
Small RNA from serous ovarian cancer tissue. (ovary)
SRR189786SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787GSM532930(GSM532930)
G702T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189785TAX577590(Rovira)
total RNA. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR040006(GSM532891)
G601N. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR343335SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
..................................................................................................................................AAACAAACAAACAACAAAAAGTGCT............................................................................................... 256.000.003.00-3.00-------------------------
...................................................................................................................................AACAAACAAACAACAAAAAGCACAGA............................................................................................. 265.000.001.00-4.00-------------------------
.............................................................................................................................................................................................TCCATTTTCAGGGCTCTGG.......................................... 194.000.00-----4.00----------------------
....................................CCCCGGGAGGTCGAGGCTGCAGTTCA............................................................................................................................................................................................ 264.000.004.00---------------------------
..........................................................................CACTGCACTCCAGCCTGGGCGACCAATG.................................................................................................................................................... 283.000.002.00-1.00-------------------------
..................................................................................................................................AAACAAACAAACAACAAAAAGCTGC............................................................................................... 253.000.001.00-2.00-------------------------
.........................................GGAGGTCGAGGCTGCAGTGGAC........................................................................................................................................................................................... 222.000.00--2.00-------------------------
......................................................................................................................AACAAACAAAACAAACAAACAACTTG.......................................................................................................... 262.000.002.00---------------------------
.............................................................................................................................AAAACAAACAAACAAACAACAACTTG................................................................................................... 262.000.002.00---------------------------
.....................................................................................................................AAACAAACAAAACAAACAAACAAACC........................................................................................................... 262.000.002.00---------------------------
............................................................................CTGCACTCCAGCCTGGGCGACCACGAG................................................................................................................................................... 272.000.002.00---------------------------
.............................................................................................................................AAAACAAACAAACAAACAACAACGAG................................................................................................... 262.000.00--2.00-------------------------
.............................................................................................................................................................................................TCCATTTTCAGGGCTCTGGC......................................... 202.000.00----------1.00-1.00---------------
.............................................................................................................................AAAACAAACAAACAAACAACAAAAATCTC................................................................................................ 292.000.002.00---------------------------
............................................GGTCGAGGCTGCAGTGAGCCGTCCCG.................................................................................................................................................................................... 262.000.002.00---------------------------
..............................................................................................................................AAACAAACAAACAAACAACAAAAACTTG................................................................................................ 282.000.002.00---------------------------
.........................................GGAGGTCGAGGCTGCAGTGAGGTGC........................................................................................................................................................................................ 251.000.001.00---------------------------
...................................................................................................................AAAAACAAACAAAACAAACAAATTTC............................................................................................................. 261.000.001.00---------------------------
................................................................GTGTTTGCACCACTGCACTCCAGCCTCACT............................................................................................................................................................ 301.000.00------1.00---------------------
.........................................................................................................................AAACAAAACAAACAAACAAACAACAACTGC................................................................................................... 301.000.001.00---------------------------
.........................................................................................................................AAACAAAACAAACAAACAACTGG.......................................................................................................... 231.000.001.00---------------------------
..........................GCGACGACGGCCCCGGG............................................................................................................................................................................................................... 171.000.00-----------------1.00----------
.........................................................................................................................AAACAAAACAAACAAACAAACACGTC....................................................................................................... 261.000.00--1.00-------------------------
.....................................................................................................................AAACAAACAAAACAAACAAACAAACAC.......................................................................................................... 271.000.00--1.00-------------------------
.........................................................................................................................AAACAAAACAAACAAACAATAC........................................................................................................... 221.000.00--1.00-------------------------
.........................................................................................................................AAACAAAACAAACAAACAAACACTG........................................................................................................ 251.000.001.00---------------------------
.............................................................................................................................................................................................TCCATTTTCAGGGCTTGAC.......................................... 191.000.00-------------------1.00--------
..................................................................................................................................AAACAAACAAACAACAAAAACCAG................................................................................................ 241.000.001.00---------------------------
..........................................................................................................................AACAAAACAAACAAACAAACACCG........................................................................................................ 241.000.00--1.00-------------------------
..................................................................................................................................AAACAAACAAACAACAAAAAGCACGG.............................................................................................. 261.000.00--1.00-------------------------
....................................................................................................................AAAACAAACAAAACAAACAAACAAGC............................................................................................................ 261.000.00--1.00-------------------------
...............................................................................................................TCTCAAAAACAAACAAAACAGG..................................................................................................................... 221.000.00--1.00-------------------------
..............................................................................................................................AAACAAACAAACAAACAACAAACTTA.................................................................................................. 261.000.00--1.00-------------------------
..............................................................................................................GTCTCAAAAACAAACAAAACAAGGCG.................................................................................................................. 261.000.001.00---------------------------
..........................................................................................................................AACAAAACAAACAAACAAACACCC........................................................................................................ 241.000.001.00---------------------------
...............................................................................CACTCCAGCCTGGGCGACCAG...................................................................................................................................................... 211.000.00--1.00-------------------------
....................................................................................................................AAAACAAACAAAACAAACAAACAAACTG.......................................................................................................... 281.000.001.00---------------------------
...................................................................................................................................AACAAACAAACAACAAAAACTGC................................................................................................ 231.000.001.00---------------------------
................................................................................................................CTCAAAAACAAACAAAACATAGG................................................................................................................... 231.000.00--1.00-------------------------
..........................................................................................................CCCTGTCTCAAAAACAAACAAAGCT....................................................................................................................... 251.000.00--1.00-------------------------
.................................................................................................CAAGCGAGACCCTGTCTCCC..................................................................................................................................... 201.000.001.00---------------------------
.........................................................................................................................AAACAAAACAAACAAACAAACAACGAT...................................................................................................... 271.000.00--1.00-------------------------
.....................................................................................................................AAACAAACAAAACAAACAAACACTTT........................................................................................................... 261.000.001.00---------------------------
......................................CCGGGAGGTCGAGGCTGCAGTACCC........................................................................................................................................................................................... 251.000.001.00---------------------------
.......................................................................................................................ACAAACAAAACAAACAAACAAACTCC......................................................................................................... 261.000.001.00---------------------------
.................................................................................................................................CAAACAAACAAACAACAAAAAAA.................................................................................................. 231.000.001.00---------------------------
..................................................................................................................................AAACAAACAAACAACAAAAAGCTTC............................................................................................... 251.000.001.00---------------------------
.................................................................................................CAAGCGAGACCCTGTCTCAAACTG................................................................................................................................. 241.000.001.00---------------------------
.....................................CCCGGGAGGTCGAGGCTGCAGTTC............................................................................................................................................................................................. 241.000.00--1.00-------------------------
.............................ACGACGGCCCCGGGAGGTAAGG....................................................................................................................................................................................................... 221.000.001.00---------------------------
..................................................................................................................................AAACAAACAAACAACAAAAAGCTCC............................................................................................... 251.000.00--1.00-------------------------
............................................GGTCGAGGCTGCAGTGAGCCGTGTTCCC.................................................................................................................................................................................. 281.000.001.00---------------------------
...................................................................................................................................AACAAACAAACAACAAAACTTG................................................................................................. 221.000.001.00---------------------------
.....................................................................................................................AAACAAACAAAACAAACAAACAAACTTT......................................................................................................... 281.000.00--------1.00-------------------
...................................................................................................................................AACAAACAAACAACAAAAAGCAC................................................................................................ 231.000.00--1.00-------------------------
.............................................................................................................................................................................................TCCATTTTCAGGGCTTGGT.......................................... 191.000.00---------------------1.00------
.........................................................................................................................AAACAAAACAAACAAACAACTTC.......................................................................................................... 231.000.001.00---------------------------
..............................................................................................................................AAACAAACAAACAAACAACAAAACGG.................................................................................................. 261.000.001.00---------------------------
..................................................................................................................................AAACAAACAAACAACAAAAAGATT................................................................................................ 241.000.001.00---------------------------
.................................................................................................................................................................................TATTTCATGATTTCCAGAGA..................................................... 201.000.00--------------------1.00-------
...................................................................................................................AAAAACAAACAAAACAAACAATTCT.............................................................................................................. 251.000.001.00---------------------------
..........................................................................................................................AACAAAACAAACAAACAAAAATG......................................................................................................... 231.000.00--1.00-------------------------
.............................................GTCGAGGCTGCAGTGGCG........................................................................................................................................................................................... 181.000.00----------------------1.00-----
....................................................................................................................AAAACAAACAAAACAAACAAACAAACAAAC........................................................................................................ 301.000.00--1.00-------------------------
...................................................................................................................AAAAACAAACAAAACAAACAAATCTT............................................................................................................. 261.000.001.00---------------------------
...............................................................................................................................AACAAACAAACAAACAACAAAAAGTTG................................................................................................ 271.000.001.00---------------------------
...................................................................................................................AAAAACAAACAAAACAAACAAACAATTC........................................................................................................... 281.000.00--1.00-------------------------
...............................................................................................................................AACAAACAAACAAACAACAAAAACTGG................................................................................................ 271.000.001.00---------------------------
............................................................................................................................................................................................TTCCATTTTCAGGGCGGCG........................................... 191.000.00-----------1.00----------------
.........................................................................................................................AAACAAAACAAACAAACAAACGG.......................................................................................................... 231.000.001.00---------------------------
.............................................................................................................................AAAACAAACAAACAAACAACAACTGG................................................................................................... 261.000.00--1.00-------------------------
..........................................GAGGTCGAGGCTGCAGTGAGCCGTGAC..................................................................................................................................................................................... 271.000.001.00---------------------------
.....................................CCCGGGAGGTCGAGGCTGCAGTGAGCCGTTTC..................................................................................................................................................................................... 321.000.001.00---------------------------
.........................................................................................................................AAACAAAACAAACAAACAAACAACAACT..................................................................................................... 281.000.001.00---------------------------
........................................................................................................................................................AAATCAAAAGTTCCCCAAT............................................................................... 191.000.00------1.00---------------------
.....................................................................................................................AAACAAACAAAACAAACAAACACGAG........................................................................................................... 261.000.001.00---------------------------
.............................................................................................................................AAAACAAACAAACAAACAACAAAACG................................................................................................... 261.000.00--1.00-------------------------
....................................................................................................................AAAACAAACAAAACAAACAAACAAACG........................................................................................................... 271.000.001.00---------------------------
..................................................................................GGTCGCCCAGGCTGGA........................................................................................................................................................ 1601.001.00----1.00-----------------------
...................................................................................................................AAAAACAAACAAAACAAACAAATTCC............................................................................................................. 261.000.00--1.00-------------------------
..................................................................................................................................AAACAAACAAACAACAAAAAGCTGCT.............................................................................................. 261.000.00--1.00-------------------------
......................................................................................................................AACAAACAAAACAAACAAACACA............................................................................................................. 231.000.001.00---------------------------
............................................................................................................................CAAAACAAACAAACAAACAACAACGC.................................................................................................... 261.000.001.00---------------------------
...............................................................................................................................AACAAACAAACAAACAACAAGGGC................................................................................................... 241.000.00--1.00-------------------------
.....................................................................................................................AAACAAACAAAACAAACAAACG............................................................................................................... 221.000.00--1.00-------------------------
....................................................................................................................AAAACAAACAAAACAAACAAACAAACAACTG....................................................................................................... 311.000.001.00---------------------------
..............................................................................................................................AAACAAACAAACAAACAACAAAAAAAG................................................................................................. 271.000.001.00---------------------------
...................................................................................................................AAAAACAAACAAAACAAACAAACACGAC........................................................................................................... 281.000.001.00---------------------------
.......................................................................................................................................AACAAACAACAAAAAGACC................................................................................................ 191.000.00-----------------------1.00----
................................................................................................................CTCAAAAACAAACAAAACAAGTGG.................................................................................................................. 241.000.001.00---------------------------
.............................................................................................................................................................................................TCCATTTTCAGGGCTCTG........................................... 181.000.00---------------1.00------------
.........................................................................................................................AAACAAAACAAACAAACAAACACCTG....................................................................................................... 261.000.001.00---------------------------
.............................................................................................................................AAAACAAACAAACAAACAACACGA..................................................................................................... 241.000.001.00---------------------------
......................................CCGGGAGGTCGAGGCTGCAGTGAGCCGTTCTC.................................................................................................................................................................................... 321.000.001.00---------------------------
..................................ACTGCAGCCTCGACCTCCCGGGGCC............................................................................................................................................................................................... 2530.330.330.33---------------------------
.........................................................................................................................TTTTTGTTGTTTGTTTGTTTGTTTTGTTT.................................................................................................... 2980.120.120.12---------------------------