ID: uc001duk.2_intron_39_0_chr1_103455128_r.3p
GENE: (24)
chr1:103455078-103455327-


(1)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(3)
CELL-LINE 		(3)
CERVIX 		(2)
LIVER 		(4)
OTHER 		(3)
SKIN 		(1)
XRN.ip

Sense strand
ATGTGAAAATATGAGATGATATTGGGGATCAGAATCTGTGGCTGGAGTTGGAAAAGGGAGGAGGAAGTTTCACAACTACCATGCACATTTCTCAAAAATAATTTTCCCTCGTTATCAGCACATAAATTTTTATAGCAATATTTTAGGTTACTCCAAAGGACTGATTAAACTCCTATTTAATTCCTTTTATAATGTTTTAGGGTGAAGATGGTTTTCCAGGATTCAAAGGTGACATGGGTCTAAAAGGTGA

................................................................................81....................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR040042(GSM532927)
G428N. (cervix)		SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR040008(GSM532893)
G727N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR040043(GSM532928)
G428T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
................................................................................................................TATCAGCACATAAATATTG.......................................................................................................................1965.000.0057.003.00-4.00---------1.00----
................................................................................................................TATCAGCACATAAATATTT.......................................................................................................................1910.000.008.00-1.001.00--------------
................................................................................................................TATCAGCACATAAATATTA.......................................................................................................................194.000.001.003.00----------------
................................................................................................................TATCAGCACATAAATATGT.......................................................................................................................193.000.003.00-----------------
................................................................................................................TATCAGCACATAAATATCG.......................................................................................................................193.000.002.001.00----------------
................................................................................................................TATCAGCACATAAATCTTG.......................................................................................................................193.000.003.00-----------------
................................................................................................................TATCAGCACATAAATGTT........................................................................................................................183.000.00--3.00---------------
....................................................................................................................................................................................................TTAGGGTGAAGATGGAGG....................................183.000.00----2.00-1.00-----------
................................................................................................................TATCAGCACATAAATTG.........................................................................................................................172.000.002.00-----------------
..............................AGAATCTGTGGCTGGAGATA........................................................................................................................................................................................................202.000.00-----2.00------------
................................................................................................................TATCAGCACATAAATACTG.......................................................................................................................192.000.00-2.00----------------
................................................................................................................TATCAGCACATAAATGTTT.......................................................................................................................192.000.001.001.00----------------
....................................................................................................................................................................................................TTAGGGTGAAGATGGAGGG...................................191.000.00------1.00-----------
..............................AGAATCTGTGGCTGGGGGA.........................................................................................................................................................................................................191.000.00---------1.00--------
................................................................................................................TATCAGCACATAAATAATG.......................................................................................................................191.000.00-1.00----------------
................................................................................................................TATCAGCACATAAATAGTA.......................................................................................................................191.000.00-1.00----------------
................................................................................................................TATCAGCACATAAATATGA.......................................................................................................................191.000.001.00-----------------
................................................................................................................TATCAGCACATAAATCCTG.......................................................................................................................191.000.00---1.00--------------
.............................CAGAATCTGTGGCTGGGAGT.........................................................................................................................................................................................................201.000.00----------1.00-------
................................................................................................................TATCAGCACATAAATTTTT.......................................................................................................................1911.001.001.00-----------------
................................................................................................................TATCAGCACATAAATTTTGGCA....................................................................................................................221.000.00--1.00---------------
................................................................................................................TATCAGCACATAAATTTTTTG.....................................................................................................................2111.001.001.00-----------------
................................................................................................................TATCAGCACATAAATGTAT.......................................................................................................................191.000.001.00-----------------
................................................................................................................TATCAGCACATAAATACAC.......................................................................................................................191.000.001.00-----------------
................................................................................................................TATCAGCACATAAATACGG.......................................................................................................................191.000.001.00-----------------
................................................................................................................TATCAGCACATAAATGTTG.......................................................................................................................191.000.00--1.00---------------
................................................................................................................TATCAGCACATAAATATT........................................................................................................................181.000.001.00-----------------
...................................................................................................................CAGCACATAAATTTTTGTGA...................................................................................................................201.000.00------------1.00-----
....................................................................................................................................................................................................TTAGGGTGAAGATGGTTTAGTT................................221.000.00-----------1.00------
...................................................................................................................................................................................................TTTAGGGTGAAGATGGAGG....................................191.000.00----1.00-------------
................................................................................................................TATCAGCACATAAATACTT.......................................................................................................................191.000.001.00-----------------
................................................................................................................TATCAGCACATAAATAGTG.......................................................................................................................191.000.001.00-----------------
...............................................................................................AAATAATTTTCCCTCTATA........................................................................................................................................191.000.00--------------1.00---
................................................................................................................TATCAGCACATAAATATGG.......................................................................................................................191.000.001.00-----------------
................................................................................................................TATCAGCACATAAATTC.........................................................................................................................171.000.001.00-----------------
.....................................................................................CATTTCTCAAAAATAATT...................................................................................................................................................1820.500.50-------0.50----------
...........................ATCAGAATCTGTGGCT...............................................................................................................................................................................................................1660.170.17----------------0.17-

Antisense strand
ATGTGAAAATATGAGATGATATTGGGGATCAGAATCTGTGGCTGGAGTTGGAAAAGGGAGGAGGAAGTTTCACAACTACCATGCACATTTCTCAAAAATAATTTTCCCTCGTTATCAGCACATAAATTTTTATAGCAATATTTTAGGTTACTCCAAAGGACTGATTAAACTCCTATTTAATTCCTTTTATAATGTTTTAGGGTGAAGATGGTTTTCCAGGATTCAAAGGTGACATGGGTCTAAAAGGTGA

................................................................................81....................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR040042(GSM532927)
G428N. (cervix)		SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR040008(GSM532893)
G727N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR040043(GSM532928)
G428T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.......................................................................ACAACTACCATGCACATTG................................................................................................................................................................ 1911.000.0011.00-----------------
......................................................................CACAACTACCATGCACTTG................................................................................................................................................................. 192.000.002.00-----------------
.......................................................................ACAACTACCATGCACATCT................................................................................................................................................................ 191.000.001.00-----------------
......................................................................CACAACTACCATGCACTTGC................................................................................................................................................................ 201.000.001.00-----------------
.........................................................................................................................................................................................TTTATAATGTTTTAGGTAAA............................................. 201.000.00-------1.00----------
......................................................................CACAACTACCATGCACGGG................................................................................................................................................................. 191.000.001.00-----------------
.......................................................................ACAACTACCATGCACATTT................................................................................................................................................................ 191.000.001.00-----------------
...................................................AAAAGGGAGGAGGAAAGA..................................................................................................................................................................................... 181.000.00--------1.00---------
......................................................................................................................................................ATCAGTCCTTTGGAG..................................................................................... 1520.500.50---------------0.50--
...........................................................................................................................................................................................................................TGTCACCTTTGAATC................ 1590.110.11-----------------0.11