ID: uc001boh.1_intron_0_0_chr1_27878362_r
GENE: AHDC1(7)
chr1:27878312-27878599-


(1)
AGO2.ip
(2)
BRAIN
(11)
BREAST
(7)
CELL-LINE
(13)
CERVIX
(4)
HEART
(3)
LIVER
(2)
OTHER
(24)
SKIN
(1)
TESTES

Sense strand
GTGACTTCCAGTGCCGTGTGCAGCTCTCCTGACTACCTCCGGGAACCCAAGTACTACCCCGGCGGCCCCCCCACCCCCCGGCCCCTGCTTCCCACCCGGCCCCCTGCCAGCCCACCTGACAAGGCCTTCTCCACCCACGCCTTCTCCGAGAACCCACGCCCACCCCCACGCCGGGACCCCAGCACCCGGCGCCCACCAGTCCTTGCCAAGGGGGACGACCCGCTGCCCCCACGGGCAGCCCGTCCTGTCTCACAGGCCCGCTGCCCCACACCGGTCGGAGACGGCAGC
............................................................................((((((...............((((...((.(((.....))).)).)))).((((................))))..................)))))).................................................................................................................
.................................................................66..............................................................................................................178............................................................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189782SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR040032(GSM532917)
G603N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040009(GSM532894)
G727T. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR040007(GSM532892)
G601T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040022(GSM532907)
G575N. (cervix)
SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
......................................................................CCACCCCCCGGCCCCGCG........................................................................................................................................................................................................1838.000.00-5.00-3.002.002.00--1.00-1.00-2.00-1.00--1.001.001.00-1.00-------1.00---1.00-1.00--1.00--1.001.00-1.001.00-1.00--1.001.001.001.001.00---1.001.00----1.00-----
......................................................................CCACCCCCCGGCCCCGCGT.......................................................................................................................................................................................................199.000.00-1.00--1.00---------1.00-1.00-1.00----1.00-1.00-------------------------------1.00---1.00--------
.........AGTGCCGTGTGCAGCTCTCCT..................................................................................................................................................................................................................................................................2115.005.00--5.00-------------------------------------------------------------------
.....................................................................................................................................CCCACGCCTTCTCCGAGAACCCACGC.................................................................................................................................2612.002.00---------------2.00------------------------------------------------------
............................................................................................................................................................CGCCCACCCCCACGCTAA..................................................................................................................181.000.00-------1.00--------------------------------------------------------------
...................................................................CCCCCACCCCCCGGCCCCGCG........................................................................................................................................................................................................211.000.00---------------------------1.00------------------------------------------
.............CCGTGTGCAGCTCTCCT..................................................................................................................................................................................................................................................................1711.001.00---------1.00------------------------------------------------------------
......................................................................CCACCCCCCGGCCCCGCGC.......................................................................................................................................................................................................191.000.00----------------1.00-----------------------------------------------------
........................................................................................................................................................CCCACGCCCACCCCCGA.......................................................................................................................171.000.00------------------------1.00---------------------------------------------
.............................TGACTACCTCCGGGAACC.................................................................................................................................................................................................................................................1811.001.00----------------------------1.00-----------------------------------------
.....................................................................CCCACCCCCCGGCCCCGCG........................................................................................................................................................................................................191.000.00------1.00---------------------------------------------------------------
....................................................................................................................TGACAAGGCCTTCTCCACCCACGCC...................................................................................................................................................2511.001.00----------------------1.00-----------------------------------------------
............................................................................................................................................................CGCCCACCCCCACGCGGAA.................................................................................................................191.000.00-------1.00--------------------------------------------------------------
............................................................................................................................CCTTCTCCACCCACGCCTTCTCCGAGAAC.......................................................................................................................................2911.001.00-----------1.00----------------------------------------------------------
...................................................................CCCCCACCCCCCGGCACG...........................................................................................................................................................................................................181.000.00--------------------1.00-------------------------------------------------
......................................................................CCACCCCCCGGCCCCGCA........................................................................................................................................................................................................181.000.00------------------------------------------------1.00---------------------
............................................................................................................................................................CGCCCACCCCCACGCGGA..................................................................................................................181.000.00-------1.00--------------------------------------------------------------
............................................................................................................................................................CGCCCACCCCCACGCACA..................................................................................................................181.000.00------------------------------------------------------------1.00---------
.................................................................................................................................................................ACCCCCACGCCGGGACCCCTG..........................................................................................................211.000.00-------------1.00--------------------------------------------------------
........................................................CCCCGGCGGCCCCCCCGGTG....................................................................................................................................................................................................................201.000.00------------------------------------1.00---------------------------------
........................................................CCCCGGCGGCCCCCCCCC......................................................................................................................................................................................................................181.000.00---------------------------------------------------------------1.00------
........................................................CCCCGGCGGCCCCCCCC.......................................................................................................................................................................................................................171.000.00-------------------------------------------------------1.00--------------
........................................................CCCCGGCGGCCCCCCGG.......................................................................................................................................................................................................................1721.000.50----------0.50-------------------------------------------------------0.50---
.....................................................................................TGCTTCCCACCCGGCCCGGAC......................................................................................................................................................................................211.000.00----------------------------------------1.00-----------------------------
......................................................................................................................................................................................CACCCGGCGCCCACCAGTAC......................................................................................201.000.00------------------------------1.00---------------------------------------
.................................................................................................................ACCTGACAAGGCCTTCTCCACCC........................................................................................................................................................2311.001.00--------------------------------------------------------1.00-------------
........................................................................ACCCCCCGGCCCCTGCTTCGA...................................................................................................................................................................................................211.000.00----------------------------------------------1.00-----------------------
........................................................CCCCGGCGGCCCCCCG........................................................................................................................................................................................................................1620.500.50-------------------0.50--------------------------------------------------
........................................................CCCCGGCGGCCCCCCAC.......................................................................................................................................................................................................................1720.500.50-----------------------------------------------------------------0.50----
........................................................CCCCGGCGGCCCCCC.........................................................................................................................................................................................................................1520.500.50----------0.50-----------------------------------------------------------
.............................................................................................................................CTTCTCCACCCACGCC...................................................................................................................................................1660.170.17---------------------------------------------------------------------0.17

Antisense strand
GTGACTTCCAGTGCCGTGTGCAGCTCTCCTGACTACCTCCGGGAACCCAAGTACTACCCCGGCGGCCCCCCCACCCCCCGGCCCCTGCTTCCCACCCGGCCCCCTGCCAGCCCACCTGACAAGGCCTTCTCCACCCACGCCTTCTCCGAGAACCCACGCCCACCCCCACGCCGGGACCCCAGCACCCGGCGCCCACCAGTCCTTGCCAAGGGGGACGACCCGCTGCCCCCACGGGCAGCCCGTCCTGTCTCACAGGCCCGCTGCCCCACACCGGTCGGAGACGGCAGC
............................................................................((((((...............((((...((.(((.....))).)).)))).((((................))))..................)))))).................................................................................................................
.................................................................66..............................................................................................................178............................................................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189782SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR040032(GSM532917)
G603N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040009(GSM532894)
G727T. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR040007(GSM532892)
G601T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040022(GSM532907)
G575N. (cervix)
SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
........................................................CCCCGGCGGCCCCCCAAT...................................................................................................................................................................................................................... 1822.000.002.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................................................GCCCGCTGCCCCACAGTGA.............. 191.000.00--------------------------------1.00-------------------------------------
........................................................CCCCGGCGGCCCCCCCGGC..................................................................................................................................................................................................................... 191.000.00-------------------------------1.00--------------------------------------
...........................................................................CCCCGGCCCCTGCTTCCT................................................................................................................................................................................................... 181.000.00------1.00---------------------------------------------------------------
................................................................................GCCCCTGCTTCCCACCCAAC............................................................................................................................................................................................ 201.000.00---------------------------------------1.00------------------------------
........................................................CCCCGGCGGCCCCCCGG....................................................................................................................................................................................................................... 1721.000.001.00---------------------------------------------------------------------
....................................................................................................................................................AGAACCCACGCCCACCCCCGGTG..................................................................................................................... 231.000.00-------------------------------------1.00--------------------------------
.......................................................................CACCCCCCGGCCCCTCGCC...................................................................................................................................................................................................... 191.000.00-----------1.00----------------------------------------------------------
....................................................................................................................................................................................................................GCCCGTGGGGGCAGCGGGTCGTCC.................................................... 2411.001.00-----1.00----------------------------------------------------------------
.......................................................................CACCCCCCGGCCCCTCG........................................................................................................................................................................................................ 171.000.00-------------------------------------------------1.00--------------------
......................................................GGGGGGGCCGCCGGGGTA........................................................................................................................................................................................................................ 1811.001.001.00---------------------------------------------------------------------
.....................................................................................................................................................GAACCCACGCCCACCGTA......................................................................................................................... 181.000.00-----------------1.00----------------------------------------------------
..................................................................................................................................................................................................................................................TCCTGTCTCACAGGCGTGG........................... 191.000.00--------------------------------------------------------------1.00-------
...................................................................CCCCCACCCCCCGGCCCAGC......................................................................................................................................................................................................... 201.000.00--------1.00-------------------------------------------------------------
.....................................................................CCCACCCCCCGGCCCCT.......................................................................................................................................................................................................... 171.000.001.00---------------------------------------------------------------------
...........................................................................................CCACCCGGCCCCCTGCCAGTGGT.............................................................................................................................................................................. 231.000.00---------1.00------------------------------------------------------------
.....................................................................CCCACCCCCCGGCCCCTC......................................................................................................................................................................................................... 181.000.001.00---------------------------------------------------------------------
........................................................CCCCGGCGGCCCCCCGCG...................................................................................................................................................................................................................... 1821.000.00-------------------------------------------1.00--------------------------
.............................................................GCGGCCCCCCCACCCTCT................................................................................................................................................................................................................. 181.000.00------1.00---------------------------------------------------------------
..................................................GTACTACCCCGGCGGCCCCGCT........................................................................................................................................................................................................................ 221.000.00--------------------------1.00-------------------------------------------
.................................................................................................GGCCCCCTGCCAGCCCACCTAGG........................................................................................................................................................................ 231.000.00-------------1.00--------------------------------------------------------
........................................................CCCCGGCGGCCCCCCCCGG..................................................................................................................................................................................................................... 191.000.00----------------------------------1.00-----------------------------------
................................................................GCCGGGGGGTGGGGGGGC.............................................................................................................................................................................................................. 1840.250.25-------------------------------------------------------------------0.25--
.....................................................................................................................................CGGAGAAGGCGTGGG............................................................................................................................................ 1550.200.20--------------------------------------------------------------------0.20-
.......................................................GGGGGCCGCCGGGGT.......................................................................................................................................................................................................................... 1560.170.17-------------------0.17--------------------------------------------------
..............................................................GGGGGGTGGGGGGGCCG................................................................................................................................................................................................................. 1770.140.140.14---------------------------------------------------------------------