ID: uc001bnz.1_intron_5_0_chr1_27686860_r
GENE: MAP3K6(6)
chr1:27686810-27687245-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(2)
BRAIN
(4)
BREAST
(11)
CELL-LINE
(1)
CERVIX
(7)
HEART
(1)
HELA
(2)
LIVER
(2)
OTHER
(17)
SKIN
(1)
XRN.ip

Sense strand
CACACGAGGGTGCGCATCGCCATCAAGGAGATCCCGGAGCGGGACAGCAGGTGCGGTGCGTGGCAGCGCGGGTGGGGCTGAGGGCTCGCGAGGGCCGAGTGAGCCGGGCCACGAGCGGAGCGGCTCCTGTGGGCGGGGCCTAGTGGGCGGGCTCGTAGGACCTGAGAGTTCGAGCCCTGTGGACTGGGCCCGTGGGCGGAACAGCCAGGACCGTGCGGGCGGGATTGAGGTCTGGAGGGTCCTGTGGGCAGGGTAGTAAGGGTGGGGAAGGTCGGAGAGGGCTTGTGGGCGGGGCGGGTCCTTGGGGCGGGGCCAGGCTGGCGTGGGATGGGCGGGGCTTCTCTGCCCACCTCGGTCCCTTTCCTCTCTCCCTTACCTCCCCTCAGGTTCTCTCAGCCCCTGCATGAAGAGATCGCTCTTCACAGACGCCTGCGCC
..........................................................................................................................................................................................................................................................(((..(((((((.(((((.....((((((((((.((.(((..(((..((((...))))...)))..))).))..(((.(((((((((...)))))))))))).)).))))))))))))))))))))..))).......................................................
..........................................................................................................................................................................................................................................................251...........................................................................................................................................393.........................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
...............................................................................................................................................................................................................................................................GTAAGGGTGGGGAAGCAC...................................................................................................................................................................1810.000.0010.00---------------------------------------------------
...............................................................................................................................................................................................................................................................GTAAGGGTGGGGAAGCAAC..................................................................................................................................................................199.000.009.00---------------------------------------------------
.............................................................................................................................................................................................................................................................TAGTAAGGGTGGGGAACAAC...................................................................................................................................................................205.000.00-5.00--------------------------------------------------
.............................................................................................................................................................................................................................................................TAGTAAGGGTGGGGAAAC.....................................................................................................................................................................185.000.00--5.00-------------------------------------------------
...............................................................................................................................................................................................................................................................GTAAGGGTGGGGAAGCGAC..................................................................................................................................................................194.000.00-4.00--------------------------------------------------
...............................................................................................................................................................................................................................................................GTAAGGGTGGGGAAGCGAA..................................................................................................................................................................193.000.003.00---------------------------------------------------
..............................................................................................................................................................................................................................................................AGTAAGGGTGGGGAAGCGAA..................................................................................................................................................................202.000.00---2.00------------------------------------------------
....................CATCAAGGAGATCCCGGAGCGGGACAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................3012.002.00----------1.00------------1.00----------------------------
.................................CCGGAGCGGGACAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................1712.002.00----1.00-------------------1.00---------------------------
......................................GCGGGACAGCAGGTGCG.............................................................................................................................................................................................................................................................................................................................................................................................1712.002.00--2.00-------------------------------------------------
..............................................................................................................................................................................................................................GATTGAGGTCTGGAGGGTC...................................................................................................................................................................................................1912.002.00---------2.00------------------------------------------
...............................................................................................................................................................................................................................................................GTAAGGGTGGGGAAGCGCA..................................................................................................................................................................191.000.001.00---------------------------------------------------
..........................................................................................................................................................GTAGGACCTGAGAGTTCGAGCCCTGTGGACT...........................................................................................................................................................................................................................................................3111.001.00-----------------------------------1.00----------------
.............................................................................................................................................................................................................................................................TAGTAAGGGTGGGGAAAAA....................................................................................................................................................................191.000.00------------------------------------1.00---------------
........................................GGGACAGCAGGTGCGCTG..........................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------1.00-------------------------
....................................................................................................................................................................................................................................................................................................................................................................CCCTTTCCTCTCTCCCAAG.............................................................191.000.00----------------------------------1.00-----------------
............................................................................................................................................................................................................................................................................................................................................................................................................CCCCTGCATGAAGAGATCGCTCT.................2311.001.00------------------------------1.00---------------------
.............................................................................................................................................................................................................................................................TAGTAAGGGTGGGGAAGAAA...................................................................................................................................................................201.000.00----------------------------------------1.00-----------
............................................................................................................................................TAGTGGGCGGGCTCGTAGGAC...................................................................................................................................................................................................................................................................................2111.001.00-----------------------------1.00----------------------
..................................................................................................................................GGGCGGGGCCTAGTGGTTT...............................................................................................................................................................................................................................................................................................191.000.00-------------------1.00--------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCCCCTGCATGAAGAG.........................2011.001.00-------1.00--------------------------------------------
..................................................GTGCGGTGCGTGGCAGCGCGGGTG..........................................................................................................................................................................................................................................................................................................................................................................2411.001.00------------------1.00---------------------------------
..............................................................................................................................................................................................................................................................AGTAAGGGTGGGGAAGGTCGG.................................................................................................................................................................2111.001.00-----------------1.00----------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGCCCCTGCATGAAGAG.........................2111.001.00------------1.00---------------------------------------
.............................................................................................................................................................................................................................................................TAGTAAGGGTGGGGAAGCA....................................................................................................................................................................191.000.00---------------------------------------1.00------------
..............................................................................................................................................................................................................................................................AGTAAGGGTGGGGAAACA....................................................................................................................................................................181.000.00---------------------------1.00------------------------
................................CCCGGAGCGGGACAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------1.00------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................TTACCTCCCCTCAGGCT...............................................171.000.00----------------1.00-----------------------------------
.................................................................................................................................................................................................................................TGAGGTCTGGAGGGTCG..................................................................................................................................................................................................171.000.00---1.00------------------------------------------------
.......................................................................................................................................................................GTTCGAGCCCTGTGGACTGG.........................................................................................................................................................................................................................................................2011.001.00-------1.00--------------------------------------------
...............................TCCCGGAGCGGGACACCT...................................................................................................................................................................................................................................................................................................................................................................................................181.000.00----------------------1.00-----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTCAGCCCCTGC.................................1711.001.00---------------------------------1.00------------------
................TCGCCATCAAGGAGATCCCGGAGC............................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-----1.00----------------------------------------------
...............................................................................................................................................................................................................................................................GTAAGGGTGGGGAAGCGC...................................................................................................................................................................181.000.00--------------------------------1.00-------------------
............................................................................................................................................................................................................................................................................................GTGGGCGGGGCGGGTGGTT.....................................................................................................................................191.000.00--------------------------------------1.00-------------
...................................................................................................................................GGCGGGGCCTAGTGGGCGGGCTCGTAGGA....................................................................................................................................................................................................................................................................................2911.001.00-----1.00----------------------------------------------
..............................................................................................................................................................................................................................................................................................................TGGGGCGGGGCCAGGCTAGAG.................................................................................................................211.000.00----------------------------1.00-----------------------
..............................................................................................................................................GTGGGCGGGCTCGTAGGACCCTG...............................................................................................................................................................................................................................................................................231.000.00----------1.00-----------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATCGCTCTTAAA.............181.000.00-------------------------------------------1.00--------
...............................................................................................................................................................................................................................................................GTAAGGGTGGGGAAGCGG...................................................................................................................................................................181.000.001.00---------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................TTTCCTCTCTCCCTTACCTCCCCTCA...................................................2611.001.00------------------------------------------1.00---------
..................................CGGAGCGGGACAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50--------------------------------------------0.50-------
.........................................................................GGGGCTGAGGGCTCG............................................................................................................................................................................................................................................................................................................................................................1530.330.33-----------------------------------------------0.33----
......................................................................................................................AGCGGCTCCTGTGGG...............................................................................................................................................................................................................................................................................................................1540.250.25-------------0.25--------------------------------------
.....................................................................................................................................................................................................GGAACAGCCAGGACCG...............................................................................................................................................................................................................................1660.170.17-------------------------------------------------0.17--

Antisense strand
CACACGAGGGTGCGCATCGCCATCAAGGAGATCCCGGAGCGGGACAGCAGGTGCGGTGCGTGGCAGCGCGGGTGGGGCTGAGGGCTCGCGAGGGCCGAGTGAGCCGGGCCACGAGCGGAGCGGCTCCTGTGGGCGGGGCCTAGTGGGCGGGCTCGTAGGACCTGAGAGTTCGAGCCCTGTGGACTGGGCCCGTGGGCGGAACAGCCAGGACCGTGCGGGCGGGATTGAGGTCTGGAGGGTCCTGTGGGCAGGGTAGTAAGGGTGGGGAAGGTCGGAGAGGGCTTGTGGGCGGGGCGGGTCCTTGGGGCGGGGCCAGGCTGGCGTGGGATGGGCGGGGCTTCTCTGCCCACCTCGGTCCCTTTCCTCTCTCCCTTACCTCCCCTCAGGTTCTCTCAGCCCCTGCATGAAGAGATCGCTCTTCACAGACGCCTGCGCC
..........................................................................................................................................................................................................................................................(((..(((((((.(((((.....((((((((((.((.(((..(((..((((...))))...)))..))).))..(((.(((((((((...)))))))))))).)).))))))))))))))))))))..))).......................................................
..........................................................................................................................................................................................................................................................251...........................................................................................................................................393.........................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
.............................................................................................................................................................................................................................................................TAGTAAGGGTGGGGAAAGA.................................................................................................................................................................... 191.000.00-----------------------------------------1.00----------
..........................................................................................................................................................................................................................................................GGGTAGTAAGGGTGGGGAAA...................................................................................................................................................................... 201.000.00-------------------------------1.00--------------------
...............................................................................................................................................................................................................................................................................................................................................................................CTCCCTTACCTCCCCTGAAA................................................. 201.000.00-----------1.00----------------------------------------
.............................................................................................................................................................................................................................................................TAGTAAGGGTGGGGAACAA.................................................................................................................................................................... 191.000.00------1.00---------------------------------------------
...........................................................................................................................................................................................................................................AGGGTCCTGTGGGCAGGGTAGCG.................................................................................................................................................................................. 231.000.00--------------------1.00-------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................CTCCCTTACCTCCCCGGGA.................................................. 191.000.00-----------1.00----------------------------------------
......................................................................................................GCCGGGCCACGAGCGGTGG........................................................................................................................................................................................................................................................................................................................... 191.000.00--------------1.00-------------------------------------
...............................................................................................................................................................................................................................................................................TCGGAGAGGGCTTGTGGC................................................................................................................................................... 181.000.00-------------------------1.00--------------------------
.................................................................................................................................................................................................................................................................................................................................GCCCCGCCCATCCCACG.................................................................................................. 1711.001.00-------------1.00--------------------------------------
.............................................................................................GCCCGGCTCACTCGGC....................................................................................................................................................................................................................................................................................................................................... 1611.001.00---------------1.00------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTCAGCCCCTTCTG............................... 191.000.00----1.00-----------------------------------------------
.............................................................................................................................................................................................................................................................TAGTAAGGGTGGGGAAAAA.................................................................................................................................................................... 191.000.00------1.00---------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................TCCCTTTCCTCTCTCCCTTTTGA.......................................................... 231.000.00--------1.00-------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................TCCCTTTCCTCTCTCCCTTGG............................................................ 211.000.00--------1.00-------------------------------------------
.............................................................................................................................................................................................................................................GGTCCTGTGGGCAGGGTATCGT................................................................................................................................................................................. 221.000.00-------------------------------------1.00--------------
..............................................................................................................................................................................................................................................................CTTCCCCACCCTTACT...................................................................................................................................................................... 1661.001.00----------------------------------------------0.50-0.17-0.170.17
.............................................................................................................................................................................................................................................................TAGTAAGGGTGGGGAAGATA................................................................................................................................................................... 200.500.00---------------------------------------------0.50------
.............................................................................................................................................................................................................................................................CTTCCCCACCCTTACTA...................................................................................................................................................................... 1720.500.50------------0.50---------------------------------------