ID: uc001awg.2_intron_5_0_chr1_15719714_f.5p
GENE: (6)
chr1:15719664-15719913+


(3)
AGO2.ip
(1)
BREAST
(19)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(4)
LIVER
(1)
OTHER
(1)
SKIN
(1)
UTERUS

Sense strand
AGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTATGCACCACCACGCCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATATTGGCCTGGGTAGTCTGGAACTCCTGACCTCAGGTCCACCCTTCCAAGGTGGAGGGATTACAGGCATGAGCCACCGCGCCTGGCCAAAAATTCATTCTTTCTATGTATAAAGCAATAGCCATATCTACATAGATGTGGAC
.........................................................(((((..((((((((((............((((.(((((...)))))))))..))))).)))))((..((((...((((....))))))))..)).....)))))........................................................................................
..................................................51...............................................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
.......................................................CACCACCACGCCCAGCTAACTC.............................................................................................................................................................................224.000.00--4.00-----------------------------
...................................................................................................................................................ACCCTTCCAAGGTGGGGA.....................................................................................182.000.00---2.00----------------------------
..................................................................................TTTTTAGTAGAGACGGGGTTTCACTCACC...........................................................................................................................................292.000.002.00-------------------------------
.........................................................................ACTTTTGTATTTTTAGTAGAGACGCGGG.....................................................................................................................................................282.000.00-2.00------------------------------
.....................................................TGCACCACCACGCCCAGGGA.................................................................................................................................................................................202.000.00------------------------1.00---1.00---
......AAGCGATTCTCCTGCCTCAGCCTGGCT.........................................................................................................................................................................................................................272.000.00-2.00------------------------------
.....................................................TGCACCACCACGCCCAGCTAACGGGA...........................................................................................................................................................................261.000.00-1.00------------------------------
.........................................................................ACTTTTGTATTTTTAGTAGAGACGGGTG.....................................................................................................................................................281.000.00-1.00------------------------------
..............................................................................................................................GGAACTCCTGACCTCAGGC.........................................................................................................191.000.00------1.00-------------------------
.......................................................................................AGTAGAGACGGGGTTTCACTCGTG...........................................................................................................................................241.000.00-1.00------------------------------
..................................................................................................................................................CACCCTTCCAAGGTGGGGAC....................................................................................201.000.00---1.00----------------------------
........................................................................AACTTTTGTATTTTTAGTAGAGACGGGTC.....................................................................................................................................................291.000.001.00-------------------------------
........................................................ACCACCACGCCCAGCTAACTTTCTC.........................................................................................................................................................................251.000.00---------------------------1.00----
.......AGCGATTCTCCTGCCTCAGCCTGGTG.........................................................................................................................................................................................................................261.000.00-1.00------------------------------
.......................................................................................AGTAGAGACGGGGTTTCACTATCCTC.........................................................................................................................................261.000.001.00-------------------------------
.........................................................................ACTTTTGTATTTTTAGTAGAGACGGGGGGTC..................................................................................................................................................311.000.001.00-------------------------------
.............................................TACAGGTATGCACCACCACGCCCGGTC..................................................................................................................................................................................271.000.00-1.00------------------------------
.......................................................CACCACCACGCCCAGCTACTCT.............................................................................................................................................................................221.000.00--1.00-----------------------------
.................................AGTAGCTGGGACTACAGGTATGCACAG..............................................................................................................................................................................................271.000.001.00-------------------------------
.................................................................................ATTTTTAGTAGAGACGGGGTTTGCCG...............................................................................................................................................261.000.00-1.00------------------------------
.....................................................TGCACCACCACGCCCAGCTAACGGG............................................................................................................................................................................251.000.00-1.00------------------------------
.........................................................................ACTTTTGTATTTTTAGTAGAGACGGGGTATT..................................................................................................................................................311.000.001.00-------------------------------
..............................................ACAGGTATGCACCACCACGCCCGGCC..................................................................................................................................................................................261.000.00-1.00------------------------------
.................................................................................................................................................CCACCCTTCCAAGGTGGGGA.....................................................................................201.000.00---1.00----------------------------
.............................................................................................................................TGGAACTCCTGACCTCAGGC.........................................................................................................201.000.00-------------1.00------------------
.........................................................................ACTTTTGTATTTTTAGTAGAGACGGGGTTCT..................................................................................................................................................311.000.001.00-------------------------------
.............................................................................................................................................................................GCATGAGCCACCGCGCCTGATA.......................................................221.000.00----------1.00---------------------
...................................................................................TTTTAGTAGAGACGGGGTTTCACTTTGC...........................................................................................................................................281.000.001.00-------------------------------
.........................................................................................................................................................................ACAGGCATGAGCCACCGCGCACCG.........................................................241.000.00-1.00------------------------------
.........................................................................ACTTTTGTATTTTTAGTAGAGACGGGGTTAC..................................................................................................................................................311.000.001.00-------------------------------
.........................................................................ACTTTTGTATTTTTAGTAGAGACGGGTTC....................................................................................................................................................291.000.001.00-------------------------------
.........................................................................ACTTTTGTATTTTTAGTAGAGACGGGGGG....................................................................................................................................................291.000.001.00-------------------------------
..............................................................................TGTATTTTTAGTAGAGACGGGGTTTGTAG...............................................................................................................................................291.000.00---------------1.00----------------
........................................................ACCACCACGCCCAGCTAACTCTT...........................................................................................................................................................................231.000.00-1.00------------------------------
..............................................................................................................................................................................CATGAGCCACCGCGCCTGGCGGGC....................................................241.000.00-1.00------------------------------
..................................................................................................................................................................AGGGATTACAGGCATGAGCCATA.................................................................231.000.00-----------1.00--------------------
........................................................................AACTTTTGTATTTTTAGTAGAGAAGC........................................................................................................................................................261.000.001.00-------------------------------
.........................................................................ACTTTTGTATTTTTAGTAGAGAGAGC.......................................................................................................................................................261.000.001.00-------------------------------
.......................................................CACCACCACGCCCAGCTAGTCC.............................................................................................................................................................................221.000.00--1.00-----------------------------
.......................................................CACCACCACGCCCAGCGTT................................................................................................................................................................................191.000.00--1.00-----------------------------
..........................................................................................................................GTCTGGAACTCCTGACCTCGGGT.........................................................................................................231.000.00-----1.00--------------------------
..................................................................................................................................................................AGGGATTACAGGCATGATCA....................................................................201.000.00------------1.00-------------------
......AAGCGATTCTCCTGCCTCAGCCTGCTT.........................................................................................................................................................................................................................271.000.00----------1.00---------------------
.......................................................CACCACCACGCCCAGCTAACGTC............................................................................................................................................................................231.000.00--1.00-----------------------------
......................................................................................TAGTAGAGACGGGGTTTCAGCTC.............................................................................................................................................231.000.001.00-------------------------------
......................................................................CTAACTTTTGTATTTTTAGTAGAGCAG.........................................................................................................................................................271.000.001.00-------------------------------
.......................................................CACCACCACGCCCAGCTAACAA.............................................................................................................................................................................221.000.00--1.00-----------------------------
........................................................................................GTAGAGACGGGGTTTCAGCA..............................................................................................................................................201.000.00-------1.00------------------------
......................................CTGGGACTACAGGTATGCACCACATCG.........................................................................................................................................................................................271.000.00--1.00-----------------------------
...................................................TATGCACCACCACGCCCAGCTAACTTCTG..........................................................................................................................................................................291.000.00--1.00-----------------------------
.......................................................CACCACCACGCCCAGCTAGCTC.............................................................................................................................................................................221.000.00--1.00-----------------------------
.......................................................CACCACCACGCCCAGCTAACTTTCATG........................................................................................................................................................................271.000.00--1.00-----------------------------
..........................................................................................................................GTCTGGAACTCCTGACCTCAGGCGT.......................................................................................................251.000.00-1.00------------------------------
...............................................................................................................................................................TGGAGGGATTACAGGCATGAGCC....................................................................2370.140.14-0.14------------------------------

Antisense strand
AGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTATGCACCACCACGCCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATATTGGCCTGGGTAGTCTGGAACTCCTGACCTCAGGTCCACCCTTCCAAGGTGGAGGGATTACAGGCATGAGCCACCGCGCCTGGCCAAAAATTCATTCTTTCTATGTATAAAGCAATAGCCATATCTACATAGATGTGGAC
.........................................................(((((..((((((((((............((((.(((((...)))))))))..))))).)))))((..((((...((((....))))))))..)).....)))))........................................................................................
..................................................51...............................................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
....................................................................................................................................................................................CCACCGCGCCTGGCCAAAAT.................................................. 202.000.00--------2.00-----------------------
.................................................GGTATGCACCACCACGCCCAGC................................................................................................................................................................................... 222.000.00-2.00------------------------------
...............................................................................................................................................................................................GGCCAAAAATTCATTCATG........................................ 191.000.00-------------------1.00------------
.........................................GGACTACAGGTATGCACT............................................................................................................................................................................................... 181.000.00---------1.00----------------------
.........................................GGTGCATACCTGTAGTCC............................................................................................................................................................................................... 1801.001.00---------1.00----------------------
.........................................................GTTAGCTGGGCGTGGTGG............................................................................................................................................................................... 1801.001.00-------1.00------------------------
...........................................................................................GAGACGGGGTTTCACTATGGCT......................................................................................................................................... 221.000.00-----------------1.00--------------
................CCTGCCTCAGCCTCCCGAGTTTTT.................................................................................................................................................................................................................. 241.000.00------------------1.00-------------
..................................................................................................................................CTCCTGACCTCAGGTCCAA..................................................................................................... 191.000.00----------------1.00---------------
.............................CCCGAGTAGCTGGGACTACCCG....................................................................................................................................................................................................... 221.000.00--------------------1.00-----------
...................................................................AAAATACAAAAGTTAGCTG.................................................................................................................................................................... 1901.001.00--------------------------1.00-----
..........................................................CACCACGCCCAGCTAACTCGCA.......................................................................................................................................................................... 221.000.00-1.00------------------------------
.................................................................AAAATACAAAAGTTAGCTGGG.................................................................................................................................................................... 2101.001.00----1.00---------------------------
..........................................................................TCTCTACTAAAAATACAAAAG........................................................................................................................................................... 2101.001.00-----1.00--------------------------
..........................................................GTTAGCTGGGCGTGGTG............................................................................................................................................................................... 1701.001.00-----------------------1.00--------
......................................CTGGGACTACAGGTATGCACCACCAAAGA....................................................................................................................................................................................... 291.000.00----------------------1.00---------
..............................CCGAGTAGCTGGGACTACAGC....................................................................................................................................................................................................... 211.000.00---------------------1.00----------
................CCTGCCTCAGCCTCCCGAGTAGCTTTTT.............................................................................................................................................................................................................. 281.000.001.00-------------------------------
.............................CCCGAGTAGCTGGGACTACACGGC..................................................................................................................................................................................................... 241.000.00------1.00-------------------------
................................................................GCCCAGCTAACTTTTGTATTTTTCT................................................................................................................................................................. 251.000.00-----------------------------1.00--
.........................................................................................................................................................................ACAGGCATGAGCCACCGCGCCTGGCCTTTA................................................... 301.000.00-------------------------1.00------
.................................................................................................................................GGGTGGACCTGAGGTCAGGAGT................................................................................................... 2260.170.17------------------------------0.17-
...................................................................................................................................GTGGACCTGAGGTCAGGA..................................................................................................... 1890.110.11-------------------------------0.11