ID: uc001aqo.2_intron_6_0_chr1_10002841_r
GENE: (1)
chr1:10002791-10003356-


(1)
AGO1.ip 		(1)
AGO2.ip 		(10)
B-CELL 		(3)
BRAIN 		(9)
BREAST 		(24)
CELL-LINE 		(8)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(7)
HELA 		(1)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(17)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
GCACAGGGGGAATCCCGGGGGCCTAAGGAGGTTGTCCCAGTTTTTGTCAGGTAGGCCCGGAAGGAGTTTCGGGGACCATGGGTTTACGGCTACCTCTGGTGGCAATTGGGGCCTGTTGGAGCCCGGCCGCCGCGGGACCTACGTGCCGGACTTCAAGTTCCCGCGTGGGGTGGGATTTGCTGCGGTGGCCGGAGCTGATTCTTCACCCAGTCCTGTTGGTTCTGGGCCAAACCCTCCTCACTTTCAAGGAAGAGGCGTGCTCTCCGCCCTTACCTTTTCCAAGCCTCTGGGTTTGACGCCATCCCTCAAGGCGTGTCCGGATGCGGGATTTTCCTCAAAGACCCTCTCGGCCTCGCTAGGAAGAAACTCAGAAAGGCTGCGGTAGGCGCAGTCGAGGGGGAAAGTGCCCCCGCCCTTGATGTCTCAGGCTGCTCAAGTGGAAGTTATCTGGACTGCCTTAGGGCAAGTTTATATATAGCAAATAAAATTACTTGTTAATGGTTTCCTTTTTTCCAGCATCTCCACCCCGAGGTGGTTTGAACTTTGAGCCTTTTGTAGTCCTGATG
..................................................(((((((((..((((((..((..((((...))))..))))).)))..((((((....(((.((....))..))).)))))).)))).)))))........................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150..............................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038859(GSM458542)
MM386. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM532887(GSM532887)
G761N. (cervix)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040040(GSM532925)
G612N. (cervix)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		SRR040043(GSM532928)
G428T. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
................................................................................GGTTTACGGCTACCTCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19116.0016.0015.00----------1.00-----------------------------------------------------------------------------
......................................AGTTTTTGTCAGGTAGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003.003.00----------------------------------------------------------------------------------------
.............................................................AGGAGTTTCGGGGACCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003.00------1.00---1.00-------------------------------------------1.00----------------------------------
.................................................................GTTTCGGGGACCATGGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003.00-3.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................TAGGAAGAAACTCAGAAAGGCTGCGGT.......................................................................................................................................................................................2713.003.00---3.00-------------------------------------------------------------------------------------
..............................................................GGAGTTTCGGGGACCATGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003.00--3.00--------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................GCGGGATTTTCCTCAAAGACC...............................................................................................................................................................................................................................2112.002.00-2.00---------------------------------------------------------------------------------------
.............................................................AGGAGTTTCGGGGACCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00------------------------------1.00-------------------------------------------------1.00--------
.............................................................................................................................................................................................................................................TCACTTTCAAGGAAGAGGC......................................................................................................................................................................................................................................................................................................................1912.002.00-------------------2.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................CTCGCTAGGAAGAAACTCAGAAAGGCTGCGGT.......................................................................................................................................................................................3212.002.00-----2.00-----------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................CTCGCTAGGAAGAAACTCAGAAAGGC.............................................................................................................................................................................................2612.002.00-1.00---1.00-----------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCAAGTGGAAGTTATCTGGACTGC..............................................................................................................2712.002.00---2.00-------------------------------------------------------------------------------------
......................................................................GGGGACCATGGGTTTACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002.00---------------------2.00-------------------------------------------------------------------
...............................................................................................................................................................................................................................................ACTTTCAAGGAAGAGGCG.....................................................................................................................................................................................................................................................................................................................1812.002.00---------------1.00------------------1.00------------------------------------------------------
..................................................................TTTCGGGGACCATGGGTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00----------------2.00------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAGGTGGTTTGAACTT......................1912.002.002.00----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACTTTGAGCCTGG.............171.000.00---------------------------------------------------1.00-------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAGGTGGTTTGAACTTTGAGC.................2411.001.00-----------------------------1.00-----------------------------------------------------------
...CAGGGGGAATCCCGGGGGCCTAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00--1.00--------------------------------------------------------------------------------------
..........................................................................ACCATGGGTTTACGGCTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------------1.00-------------------------------------------------------------------------
................................................................................GGTTTACGGCTACCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00----------------------------------------------------------------------------------------
.............................................................................ATGGGTTTACGGCTACCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------1.00-----------------------------------------------------------------------
.............................................................................................................................................................................GATTTGCTGCGGTGGCC........................................................................................................................................................................................................................................................................................................................................................................................1711.001.00----------------------------------------------------------------1.00------------------------
...........................................................................................................GGGGCCTGTTGGAGCCCGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------1.00--------------------------------------------------------------------------------
.....................................................................CGGGGACCATGGGTTTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------1.00------------------------------------------------------------------------------
......................................................................................................................GAGCCCGGCCGCCGCGGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................CTCGCTAGGAAGAAACTC.....................................................................................................................................................................................................1811.001.00-----1.00-----------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GGCGTGTCCGGATGCAAA...............................................................................................................................................................................................................................................181.000.00-------------------------------------------------1.00---------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACTTTGAGCCTTTTGTAGTCCT....2611.001.00------------------------1.00----------------------------------------------------------------
.............................................................AGGAGTTTCGGGGACCATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00--------1.00--------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................GCGTGTCCGGATGCGGGATTTTC.........................................................................................................................................................................................................................................2311.001.00----------------------------------------------------------------------------1.00------------
.......................................................................................................................................................................................................................................................................................................................................................................GAAGAAACTCAGAAAGGCTGCGGTAGGCG..................................................................................................................................................................................2911.001.00-------------------------------------------------------------------------------1.00---------
....................................................................................................................................................................................................................................................................................................................................................................TAGGAAGAAACTCAGAAAGGCTGCGG........................................................................................................................................................................................2611.001.00---1.00-------------------------------------------------------------------------------------
..................................................................................................GTGGCAATTGGGGCCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.001.00----------------------------------------------------------------------------------------
........................................................................................................ATTGGGGCCTGTTGGAGCCCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00-1.00---------------------------------------------------------------------------------------
......................................................................GGGGACCATGGGTTTACGGCTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------1.00--------------------------------------------------------
.............................................................................................CTCTGGTGGCAATTGGGGCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------1.00---------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................CAGAAAGGCTGCGGTAG.....................................................................................................................................................................................1711.001.00------------------------------------1.00----------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCCCGAGGTGGTTTGAACTTTGA...................2611.001.00-----------------------------------------------------------1.00-----------------------------
...............................................................................................................................................................................................................................................................................................................................................................CTCGCTAGGAAGAAACTCAGA..................................................................................................................................................................................................2111.001.00---------------------------1.00-------------------------------------------------------------
.................................................................................................................................................................................................................................................................TGCTCTCCGCCCTTACC....................................................................................................................................................................................................................................................................................................1711.001.00------1.00----------------------------------------------------------------------------------
......................................................................GGGGACCATGGGTTTACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--1.00--------------------------------------------------------------------------------------
......................................AGTTTTTGTCAGGTAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------------------------1.00-------------------------------------------
..............................................................................................................GCCTGTTGGAGCCCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00------------------1.00----------------------------------------------------------------------
...............................................................................GGGTTTACGGCTACCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------1.00---------------------------------------------------------------
..................................................................TTTCGGGGACCATGGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------1.00------------------------------------------------
..........................................TTTGTCAGGTAGGCCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------------------------------1.00--------------------------
...................................CCCAGTTTTTGTCAGGTAGGCCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----------------------------------------------1.00------------------------------------------
....................................................................................................................................................................................................................................................CAAGGAAGAGGCGTGCTCT...............................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------------1.00-----------
..............................................TCAGGTAGGCCCGGAAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------------------------------------------------------1.00--------------------
...............CGGGGGCCTAAGGAGGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------1.00--------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................AGGAAGAAACTCAGAAAGGCTGCGGTA......................................................................................................................................................................................2711.001.00--------------------------------------------------------------------------1.00--------------
....................................................................................................................................................................................................................................................CAAGGAAGAGGCGTGCTCTCCGC...........................................................................................................................................................................................................................................................................................................2311.001.00-------------1.00---------------------------------------------------------------------------
......................................AGTTTTTGTCAGGTAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1721.001.00--0.50-----------------------------------------------------------------------------------0.50--
.....................................................................................................................................................................................................................................................................................................................................................................AGGAAGAAACTCAGAAAGGC.............................................................................................................................................................................................2011.001.00-1.00---------------------------------------------------------------------------------------
.....GGGGGAATCCCGGGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-----------------------------------------------------------------------1.00-----------------
.......................................................................................................................................................................................................................................................................CCGCCCTTACCTTTTCCAAGCCTCT......................................................................................................................................................................................................................................................................................2511.001.00---------------------------------------------------------------1.00-------------------------
.......GGGAATCCCGGGGGCTGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--1.00--------------------------------------------------------------------------------------
.............................................................AGGAGTTTCGGGGACCATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.002.00-------1.00---------------------------------------------------------------------------------
................................................................AGTTTCGGGGACCATGGGTTTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00-----------------1.00-----------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCAGCATCTCCACCA.......................................191.000.00--------------------------------------1.00--------------------------------------------------
......................................................................................CGGCTACCTCTGGTGGCAATTGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-------------------------------------1.00---------------------------------------------------
.............CCCGGGGGCCTAAGGAGGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------------------1.00-----------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................AGGAAGAAACTCAGAAAGGCTGCG.........................................................................................................................................................................................2411.001.00-------------------------------------------------------1.00---------------------------------
................................................................................................................................................................................................................................................................................................................................................................TCGCTAGGAAGAAACTCAGAAAGGCTGC..........................................................................................................................................................................................2811.001.00------------------1.00----------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................CTAGGAAGAAACTCAGAAAGGCTG...........................................................................................................................................................................................2411.001.00----------------------1.00------------------------------------------------------------------
...........................................................................................................................................TACGTGCCGGACTTCAAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------------------------------1.00--------------------------------------------
.............................................................AGGAGTTTCGGGGACCATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.002.00-1.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CAAGGAAGAGGCGTGCTCTCC.............................................................................................................................................................................................................................................................................................................2111.001.00---------------------------------------------------------------------------1.00-------------
................................................................................GGTTTACGGCTACCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------1.00---------------------------------------------------------------------------------
............................................................AAGGAGTTTCGGGGACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------1.00------------------------------------------------------------------------------
...................................................................................................................................................................................CTGCGGTGGCCGGAGCTGA................................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------------------------------------1.00-------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................AGGAAGAAACTCAGAAAGT..............................................................................................................................................................................................191.000.00-------------------------------------------------------------------------1.00---------------
.............................................................AGGAGTTTCGGGGACCCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-1.00---------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................CTAGGAAGAAACTCAGAAAGGCTGCGGTAGGCG..................................................................................................................................................................................3311.001.00------------------------------------------------------------------1.00----------------------
................................................................................................................................................................................................................................................................................................................................................................TCGCTAGGAAGAAACTCAGAAAGGC.............................................................................................................................................................................................2511.001.00---1.00-------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................ACTTTCAAGGAAGAGGC......................................................................................................................................................................................................................................................................................................................1711.001.00-------------------------------------------1.00---------------------------------------------
....................................................AGGCCCGGAAGGAGTTTCGGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------1.00--------------------------------------------------------------------------
............................................................................................................GGGCCTGTTGGAGCCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------------------------------------1.00-----------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................GCGCAGTCGAGGGGGAAAGTGCCCCCGCCCC......................................................................................................................................................311.000.00---------1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................TTCAAGGAAGAGGCGTGCTCT...............................................................................................................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------1.00----------
.......................................................................GGGACCATGGGTTTACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.001.00----------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................TAGGAAGAAACTCAGAAAGG..............................................................................................................................................................................................2011.001.00---------------------------------1.00-------------------------------------------------------
................................................................................................................................................................................................................................................................................................................CTCAAGGCGTGTCCGGATGC..................................................................................................................................................................................................................................................2011.001.00-----------------------------------------------1.00-----------------------------------------
...............................................................................GGGTTTACGGCTACCTCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------1.00--------------------------------------------------------------------------------
..........................................................................ACCATGGGTTTACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00-----1.00-----------------------------------------------------------------------------------
...................................................................................................TGGCAATTGGGGCCTGTTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-1.00---------------------------------------------------------------------------------------
............TCCCGGGGGCCTAAGGAGGTTGCCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00---------1.00-------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................TCGCTAGGAAGAAACTC.....................................................................................................................................................................................................1711.001.00---------------------------------------------------------------------------------1.00-------
.............................................GTCAGGTAGGCCCGGAAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-1.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................GAAGAAACTCAGAAAGGCTG...........................................................................................................................................................................................2011.001.00-1.00---------------------------------------------------------------------------------------
..................................................................................................GTGGCAATTGGGGCCTGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.001.00----------------------------------------------------------------------------------------
.................................................................................................................................................CCGGACTTCAAGTTCCCGCGTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00--------------------1.00--------------------------------------------------------------------
......................................................................................................................GAGCCCGGCCGCCGCGGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------------------------------------------------1.00--------------------------------------
......................................................GCCCGGAAGGAGTTTCGGGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------1.00--------------------------------------------------------------------------
...........................................................................................................................CGGCCGCCGCGGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................1530.670.67----------------------0.33----------------------------------------------------------------0.33-
...........................................................................................................................CGGCCGCCGCGGGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50------------------------------------------------------------------------------------0.50----
...........................................................................................................................................................................................................................................CCTCACTTTCAAGGAAG..........................................................................................................................................................................................................................................................................................................................1720.500.50-----------------------------------------------------------------------------------0.50-----
.............................................................................................................................................................................................................................................TCACTTTCAAGGAAGAG........................................................................................................................................................................................................................................................................................................................1720.500.50----------------------------------------------------------------------------------0.50------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAACTTTGAGC.................1560.170.17----------------------------------------------------------------------------------------0.17

Antisense strand
GCACAGGGGGAATCCCGGGGGCCTAAGGAGGTTGTCCCAGTTTTTGTCAGGTAGGCCCGGAAGGAGTTTCGGGGACCATGGGTTTACGGCTACCTCTGGTGGCAATTGGGGCCTGTTGGAGCCCGGCCGCCGCGGGACCTACGTGCCGGACTTCAAGTTCCCGCGTGGGGTGGGATTTGCTGCGGTGGCCGGAGCTGATTCTTCACCCAGTCCTGTTGGTTCTGGGCCAAACCCTCCTCACTTTCAAGGAAGAGGCGTGCTCTCCGCCCTTACCTTTTCCAAGCCTCTGGGTTTGACGCCATCCCTCAAGGCGTGTCCGGATGCGGGATTTTCCTCAAAGACCCTCTCGGCCTCGCTAGGAAGAAACTCAGAAAGGCTGCGGTAGGCGCAGTCGAGGGGGAAAGTGCCCCCGCCCTTGATGTCTCAGGCTGCTCAAGTGGAAGTTATCTGGACTGCCTTAGGGCAAGTTTATATATAGCAAATAAAATTACTTGTTAATGGTTTCCTTTTTTCCAGCATCTCCACCCCGAGGTGGTTTGAACTTTGAGCCTTTTGTAGTCCTGATG
..................................................(((((((((..((((((..((..((((...))))..))))).)))..((((((....(((.((....))..))).)))))).)))).)))))........................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150..............................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038859(GSM458542)
MM386. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM532887(GSM532887)
G761N. (cervix)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040040(GSM532925)
G612N. (cervix)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		SRR040043(GSM532928)
G428T. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................................ACGCGGGAACTTGAAGTC................................................................................................................................................................................................................................................................................................................................................................................................................ 1816.006.00----6.00------------------------------------------------------------------------------------
................................................................................................................................................GGAACTTGAAGTCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................... 1713.003.003.00----------------------------------------------------------------------------------------
......................................................................................................................................AAGTCCGGCACGTAGGTCC............................................................................................................................................................................................................................................................................................................................................................................................................................. 1912.002.00------------2.00----------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGTGGAGATGCTGGA..................................... 1812.002.00--------------------------1.00---------------------------------1.00----------------------------
.........................................................................................................................CCCGGCCGCCGCGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................. 161.000.00------------------------------------------1.00----------------------------------------------
..........................................................................................................................................ACTTGAAGTCCGGCACGTAG........................................................................................................................................................................................................................................................................................................................................................................................................................ 2011.001.00-----------------------------------------------------------------1.00-----------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCTTAGGGCAATG.................................................................................................. 181.000.00---------1.00-------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................AAAGGTAAGGGCGGAGAGCACG................................................................................................................................................................................................................................................................................................. 2211.001.00-----------1.00-----------------------------------------------------------------------------
.........................................................................................................................................GAACTTGAAGTCCGGCACGTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................... 2311.001.00---------------------------------------------------------------------1.00-------------------
..................................................................................................................................................................................................AGGACTGGGTGAAGAATCAG................................................................................................................................................................................................................................................................................................................................................................ 2011.001.00-1.00---------------------------------------------------------------------------------------
................................................................................................................................CACGTAGGTCCCGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................... 1711.001.00-------------------------------------------------------------1.00---------------------------
.......................................................................................................................................................................................................TCTTCACCCAGTCCTGGCAA........................................................................................................................................................................................................................................................................................................................................................... 201.000.00----------------------------------------------------------1.00------------------------------
........................................................................................................................................CGCGGGAACTTGAAGTCCGGCACGTAGGT................................................................................................................................................................................................................................................................................................................................................................................................................. 2911.001.00-------------------------------1.00---------------------------------------------------------
.......................................................................................................................AGCCCGGCCGCCGCGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00----------------------------------------------------------------------1.00------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCTTTTTTCCAGCATCTAA........................................... 251.000.00-------------------------------------------------------------------1.00---------------------
.......................................................................................................................................................................................................TCTTCACCCAGTCCTGGTT............................................................................................................................................................................................................................................................................................................................................................ 191.000.00----------------------------1.00------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCTCGGGGTGGAGATGCTGGAAAAAAGG............................... 3111.001.00--1.00--------------------------------------------------------------------------------------
.......................................................................................................................AGCCCGGCCGCCGCGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00-----------------------1.00-----------------------------------------------------------------
..........................................................................................................................................AACTTGAAGTCCGGCACGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................... 2111.001.00------1.00----------------------------------------------------------------------------------
....................................................................................................................................................................................................................................AAACCCTCCTCACTTCTGC............................................................................................................................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------1.00--------------------------------
.............................................................................................................................................GGAACTTGAAGTCCGGCACG..................................................................................................................................................................................................................................................................................................................................................................................................................... 2011.001.00-1.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................................ACCAACAGGACTGGGTGAAGA.......................................................................................................................................................................................................................................................................................................................................................... 2111.001.00-1.00---------------------------------------------------------------------------------------
......................................................................................................................................GAAGTCCGGCACGTAGGTCC............................................................................................................................................................................................................................................................................................................................................................................................................................ 2011.001.00----------------------------------------------------1.00------------------------------------
................................................................................................................................................GGGAACTTGAAGTCCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................... 1811.001.00------1.00----------------------------------------------------------------------------------
..............................GTTGTCCCAGTTTTTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00------------------------------------------------1.00----------------------------------------
................................................................................................................................GTCCGGCACGTAGGTCCCGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................... 2311.001.00------1.00----------------------------------------------------------------------------------
.......................................................................................................................................................................................................AACCAACAGGACTGGGTGAAGA......................................................................................................................................................................................................................................................................................................................................................... 2211.001.00------------------------------------------------------------------------1.00----------------
...............................................................................................................................................................................TTTGCTGCGGTGGCCGACT.................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------1.00---------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAAGTGCCCCCGC......................................................................................................................................................... 171.000.00-----------------------------------1.00-----------------------------------------------------
.................................................................................................................................................................................................................................................................GAAAAGGTAAGGGCGGAGAGCA............................................................................................................................................................................................................................................................................................... 2211.001.00---------------------------------------------------------1.00-------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGCTGGAAAAAAGGAA............................................. 1920.500.50-------------------------------------------------------------------------------------0.50---