ID: uc001aie.2_intron_8_0_chr1_1688750_r.5p
GENE: (5)
chr1:1690340-1690589-


(5)
AGO2.ip
(2)
B-CELL
(9)
BREAST
(23)
CELL-LINE
(6)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(1)
OTHER
(32)
SKIN

Sense strand
TGGGCTCAGCTGAGCCTCAGGGCTGGAATGGGTGTAGGCCAGGCCACTGGGTCAGTGGTGACTGTTGGCGGGGAGAGCAGGGGGAGCCGTGTGCAGGGCGGGGGCTTTGCTGGCTGACCAGGCCGGAGGACCGTGAGCCACCTGCACGCCCTTGGGCCGGAGCCAAGCAGAGTGACGCAGCGGGCTAGGAGGCAGGGAACGCCCTTCCACCTGACTGTGGCCTGAGGGTGCCTTCCCTGGGGCCCAGCCG
............................................................................(((.((....)).)))((...(((...((((((((((((..((.((((.((((..((((((....)).)))).)))).))))))))))).)))))))..))).)).....................................................................
............................................................................77..............................................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
TAX577742(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
GSM532883(GSM532883)
G871N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
SRR040032(GSM532917)
G603N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGAA.................................................................20132.006.004.004.004.003.001.004.00--2.00--1.00-----1.002.00---1.00--------------------1.00-------------1.00--------1.001.00----1.00---
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGAAGC...............................................................22119.006.001.00-1.002.00--2.00-------1.00----1.00----1.00--1.00-----1.00----------1.00-----1.00--1.001.00--------1.00-1.00-----1.00--1.00-
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGA..................................................................19118.006.004.001.00--1.00-1.00---2.001.00-2.00------1.00-----------1.00-----1.00-----------------1.00---1.00------------1.00--
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGAAG................................................................21115.006.001.00-1.00----1.001.001.00-1.001.001.001.002.00----1.00-1.00----------------------1.00------------------1.00-----------
.....................................................................................................................................................................AGCAGAGTGACGCAGCG....................................................................1719.009.00-------2.00----1.00------1.00---1.00-----1.001.00----------------------------1.00-1.00--------------
.....................................................................................................................................................................AGCAGAGTGACGCAGCGG...................................................................1816.006.00---1.001.001.00-1.00--------------------------1.00------1.00----------------------------------
.....................................................................................................................................................................AGCAGAGTGACGCAGC.....................................................................1615.005.00----1.00------------1.00-------1.00------------------------------------------1.00------1.00
.......................................................................................................................................................................CAGAGTGACGCAGCGGAAGC...............................................................203.000.00-1.00--------------------------------------------------------1.00----------1.00------
...............................................................................................................GGCTGACCAGGCCGGAGGACCGTGAGCCA..............................................................................................................2912.002.00-------------------------------------------------1.00--1.00-----------------------
........................................................................................................................................................................AGAGTGACGCAGCGGA..................................................................162.000.00----------------2.00-----------------------------------------------------------
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGATT................................................................2112.006.00---------2.00------------------------------------------------------------------
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGGGG................................................................2111.001.00------------------------1.00---------------------------------------------------
.................................................................................GGGAGCCGTGTGCAGTACC......................................................................................................................................................191.000.00----------------------------------------1.00-----------------------------------
......................................................................................................................................................................GCAGAGTGACGCAGCGGAA.................................................................191.000.00--------1.00-------------------------------------------------------------------
....................................................................................................................ACCAGGCCGGAGGACCGTGAGCC...............................................................................................................2311.001.00-----------------------------------------------1.00----------------------------
............................TGGGTGTAGGCCAGGCCACTGGGTCAGTGGTG..............................................................................................................................................................................................3211.001.00-------------------------------------------------------1.00--------------------
....................................................................................................................ACCAGGCCGGAGGACCGTGAGCCACCCGC.........................................................................................................291.000.00---------------------1.00------------------------------------------------------
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGAAGA...............................................................2211.006.00------------1.00---------------------------------------------------------------
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGTGTC...............................................................2211.006.00-----------------------1.00----------------------------------------------------
......................................................................................................................................................................GCAGAGTGACGCAGCGGGCTAGGAG...........................................................2511.001.00---------------------------------------------------1.00------------------------
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGCA.................................................................2011.006.00-------------------------------1.00--------------------------------------------
...................................AGGCCAGGCCACTGGGTCAGTGGCGAC............................................................................................................................................................................................271.000.00---------------------1.00------------------------------------------------------
...................GGGCTGGAATGGGTGTAGG....................................................................................................................................................................................................................1911.001.00------------------------------------1.00---------------------------------------
...................................................................................................................................................................................................................TGACTGTGGCCTGAGGGTGCC..................2111.001.00----------------------------------------------1.00-----------------------------
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGTTGC...............................................................2211.006.00--------------1.00-------------------------------------------------------------
................................................................................................................................................................................GCAGCGGGCTAGGAGGC.........................................................1711.001.00---------------------------------------1.00------------------------------------
........................................................................................................................................................................AGAGTGACGCAGCGGAA.................................................................171.000.00-----------------------------------1.00----------------------------------------
................TCAGGGCTGGAATGGGTGT.......................................................................................................................................................................................................................1911.001.00----------------------------1.00-----------------------------------------------
................................................................TTGGCGGGGAGAGCAGAA........................................................................................................................................................................181.000.00------1.00---------------------------------------------------------------------
...............CTCAGGGCTGGAATGGGTG........................................................................................................................................................................................................................1911.001.00------------------------------------------------1.00---------------------------
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGG..................................................................1911.001.00----1.00-----------------------------------------------------------------------
..............................GGTGTAGGCCAGGCCA............................................................................................................................................................................................................1611.001.00-------------------------------------1.00--------------------------------------
.......................................................................................................................................................................CAGAGTGACGCAGCGGAAG................................................................191.000.00----------1.00-----------------------------------------------------------------
...........................................................................................................................................................................................................................GCCTGAGGGTGCCTTAGAG............191.000.00--------------------------------------------------------------1.00-------------
.....................................................................................................................................................................AGCAGAGTGACGCAGCGGAAT................................................................2111.006.00-------------------------1.00--------------------------------------------------
............................................CACTGGGTCAGTGGTGACTGTTGGCGGGGAGAGCAG..........................................................................................................................................................................3611.001.00--------------------------1.00-------------------------------------------------

Antisense strand
TGGGCTCAGCTGAGCCTCAGGGCTGGAATGGGTGTAGGCCAGGCCACTGGGTCAGTGGTGACTGTTGGCGGGGAGAGCAGGGGGAGCCGTGTGCAGGGCGGGGGCTTTGCTGGCTGACCAGGCCGGAGGACCGTGAGCCACCTGCACGCCCTTGGGCCGGAGCCAAGCAGAGTGACGCAGCGGGCTAGGAGGCAGGGAACGCCCTTCCACCTGACTGTGGCCTGAGGGTGCCTTCCCTGGGGCCCAGCCG
............................................................................(((.((....)).)))((...(((...((((((((((((..((.((((.((((..((((((....)).)))).)))).))))))))))).)))))))..))).)).....................................................................
............................................................................77..............................................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
TAX577742(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
GSM532883(GSM532883)
G871N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
SRR040032(GSM532917)
G603N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
......................................CCAGGCCACTGGGTCTTA.................................................................................................................................................................................................. 181.000.00----------------------------------------------------------------------1.00-----
.........................................................................................................................................................................................................................................GCTGGGCCCCAGGGA.. 1501.001.00------------------------------------------1.00---------------------------------