ID: uc001ack.1_intron_20_0_chr1_983068_f
GENE: (21)
chr1:983018-983205+


(2)
AGO2.ip 		(3)
BRAIN 		(10)
BREAST 		(7)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(3)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(2)
OTHER 		(16)
SKIN 		(1)
XRN.ip

Sense strand
GGGGCCCGGCAAATCCGTCCGCGCCATTGTGGATGTGCACTTTGACCCCAGTGAGACCTGCACCCTGGACCCTTCCTGGGAGGCAATGGGTGGGGGATGCCTGGGGCTCTGCCATGCTCAGAGCTCCCTCCTCCCCAGCCACAGCCTTCAGGGCACCCGACGTGGCCCGGGCCCTGCTCCGGCAGATC
..........................................................(((.(((.(((....))).)))..))).((((..((((......(((((((((.......)))))))))))))..))))...................................................
..................................................51.....................................................................................138................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577744(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
..................................................................................................................TGCTCAGAGCTCCCTCCTCCCCAGT.................................................25115.002.00----2.00--1.00--1.00--1.00-1.001.00--1.00-1.00-1.00--------1.001.00--1.00--1.00---1.00-------
..........................................................................................TGGGGGATGCCTGGGGCTCTGCC...........................................................................2318.008.00-8.00-------------------------------------------------
..................................................GTGAGACCTGCACCCTGGACCCTTCCTGGGAGGCAATGGGTGGGGGATGCCTGGGGCTCTGCCATGCTCAGAGCTCCCTCCTCCCCAG..................................................8818.008.007.00-------------1.00------------------------------------
..........................................................................................TGGGGGATGCCTGGGGCTCTGCCA..........................................................................2416.006.00--1.004.00---------------------------1.00-------------------
..................................................................................................................TGCTCAGAGCTCCCTCCTCCCCAGA.................................................2515.002.001.00-------1.001.001.00-----------------1.00----------------------
.........................................................................................GTGGGGGATGCCTGGGGCTCTGCAT..........................................................................253.000.00--3.00------------------------------------------------
..........................................................................................TGGGGGATGCCTGGGGCTCTGC............................................................................2212.002.00-------1.00---1.00---------------------------------------
..................................................................................................................TGCTCAGAGCTCCCTCCTCCCCAT..................................................242.000.00-----------------1.00-----------------------1.00---------
..................................................................................................................TGCTCAGAGCTCCCTCCTCCCCAG..................................................2412.002.00------------------------1.00-1.00------------------------
.............................TGGATGTGCACTTTGACC.............................................................................................................................................1811.001.00--------1.00------------------------------------------
............................................................................................GGGGATGCCTGGGGCTCTCTC...........................................................................211.000.00-----------------------------------------------1.00---
..................................................................................................................TGCTCAGAGCTCCCTCCTCCCCAGTAT...............................................2711.002.00---------------------------------------------1.00-----
..................................................GTGAGACCTGCACCCTGGACCC....................................................................................................................2211.001.00-------------------------------------1.00-------------
...................................................................................................................GCTCAGAGCTCCCTCCTCCCCTC..................................................231.000.00------------------------------------------------1.00--
..................................................................................................................TGCTCAGAGCTCCCTCCTCCCCAGAAA...............................................2711.002.00----------------------------------------1.00----------
....................................................................................................CTGGGGCTCTGCCATGCTCAGA..................................................................2211.001.00------------------------------------------1.00--------
..................................................................................................................TGCTCAGAGCTCCCTCCTCCCCAA..................................................241.000.00------------------------------1.00--------------------
..................................................................................................................TGCTCAGAGCTCCCTCCTCCC.....................................................2111.001.00----------------------1.00----------------------------
.........................................................................................GTGGGGGATGCCTGGGGCTCTGCCA..........................................................................2511.001.00-----------1.00---------------------------------------
..................................................................................................................TGCTCAGAGCTCCCTCCTCCCCAGAG................................................2611.002.00---------------------------1.00-----------------------
..........................................................................................TGGGGGATGCCTGGGGCTCTGCT...........................................................................2311.002.00----------------------------------1.00----------------
...................................................................................................................GCTCAGAGCTCCCTCCTCCCCAGT.................................................241.000.00---------1.00-----------------------------------------
..........................TTGTGGATGTGCACTTTGACCCC...........................................................................................................................................2311.001.00--------------------------------------1.00------------
..................................................................................................................TGCTCAGAGCTCCCTCCTCA......................................................2011.001.00------------1.00--------------------------------------
...................CGCGCCATTGTGGATGTG.......................................................................................................................................................1811.001.00----------------------------------------------1.00----
..........................................................................................TGGGGGATGCCTGGGGCTCTGAA...........................................................................231.000.00----1.00----------------------------------------------
...............................................................................................................................................................ACGTGGCCCGGGCCCTGCTCCGGC.....2411.001.00--1.00------------------------------------------------
..................................................................................................................TGCTCAGAGCTCCCTCCTCC......................................................2011.001.00-----1.00---------------------------------------------
..................................................................................................................TGCTCAGAGCTCCCTCCTC.......................................................1911.001.00-----------------------------1.00---------------------
.................................TGTGCACTTTGACCCC...........................................................................................................................................1620.500.50-------------------------------------------------0.50-
...............................................................................................................................................................ACGTGGCCCGGGCCC..............1550.200.20------------0.20--------------------------------------

Antisense strand
GGGGCCCGGCAAATCCGTCCGCGCCATTGTGGATGTGCACTTTGACCCCAGTGAGACCTGCACCCTGGACCCTTCCTGGGAGGCAATGGGTGGGGGATGCCTGGGGCTCTGCCATGCTCAGAGCTCCCTCCTCCCCAGCCACAGCCTTCAGGGCACCCGACGTGGCCCGGGCCCTGCTCCGGCAGATC
..........................................................(((.(((.(((....))).)))..))).((((..((((......(((((((((.......)))))))))))))..))))...................................................
..................................................51.....................................................................................138................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577744(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
....................................................................................................................CTCAGAGCTCCCTCCTCGT..................................................... 191.000.00--------------------------------------------1.00------
......................................................................................................................CAGAGCTCCCTCCTCCCCACTTC............................................... 231.000.00--------------------1.00------------------------------
.................................................................................................................................CCTCCCCAGCCACAGCCTTCAGGC................................... 241.000.00-----------------------------------1.00---------------
.................................................................................................................................CCTCCCCAGCCACAGCCTTG....................................... 201.000.00------1.00--------------------------------------------
....................................................................................................................................CCCCAGCCACAGCCTTGGGG.................................... 201.000.00------1.00--------------------------------------------
....................................................................................................................................CCCCAGCCACAGCCTTCGCC.................................... 201.000.00------------------1.00--------------------------------
...................................................................................................................................................................GGCCCGGGCCCTGCTCCGC...... 191.000.00-----1.00---------------------------------------------
......................................................GACCTGCACCCTGGAC...................................................................................................................... 161.000.00-------------------------1.00-------------------------
.........................................................................................................................................CCCTGAAGGCTGTGGC................................... 1680.120.12-------------0.12-------------------------------------
..............................................................CAGGAAGGGTCCAGGG.............................................................................................................. 1680.120.12--------------------------------------------------0.12