ID: uc003bmk.7
GENE: CPT1B(7)
chr22:51010502-51010681-


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(2)
BRAIN 		(7)
BREAST 		(23)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(9)
HEART 		(3)
HELA 		(2)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
ATGCAGAGCATGCGTGGGCAGATGCTCCCATCATTGGGCACCTCTGGGAGGTAATAGCCTTGCAGAGGGAACCTGCAGGGCAGGCTGTAGGGGATGAGGCCAGCCTCTCAGTCTCATCCTCTCCCTGCAGTTTGTCCTGGGCACAGACAGCTTCCACCTGGGCTACACGGAGACCGGGCA
........................................................................((((((((........((((((((((((..........))))))))))))))))))))..................................................
.......................................................................72..............................................................136..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR189786DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR040006(GSM532891)
G601N. (cervix)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)
...............................................................................................................TCTCATCCTCTCCCTGCAGTT................................................21140.0040.0011.004.004.002.00-2.002.002.001.00--1.00--2.00---1.00-1.00------1.001.00--------1.00---1.00--1.00--------1.00---1.00--------
............................................................................AGGGCAGGCTGTAGGGGATGAGGC................................................................................24118.0018.002.001.003.002.001.00---2.002.00---------1.00--1.00-------1.00-1.00--1.00------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGT.................................................20211.0011.00-1.501.000.50---1.50--0.500.50-1.50-2.00--0.50------------------------------------------0.50-0.500.50-
...............................................................................................................TCTCATCCTCTCCCTGCAGTTT...............................................22110.0010.002.00-3.001.00-1.001.00----1.00--------------------------------------------1.00---------
...............................................................................................................TCTCATCCTCTCCCTGCAGTAT...............................................2225.0011.003.500.500.500.50--------------------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGCC...............................................................................2515.005.00----2.00-----------2.00----1.00--------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGG.................................................................................2314.004.00----1.00---------------------------------1.00---1.00------1.00----------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCC...............................................................................2313.003.00----------1.00---------------1.00-------------------------1.00-------------
.............................................................................GGGCAGGCTGTAGGGGATGAGGC................................................................................2312.002.00----------1.00------------------1.00------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGA.................................................................................2312.002.00-1.00-1.00--------------------------------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAG..................................................................................2112.002.00------1.00----1.00------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGC................................................................................2212.002.00-1.00--------1.00-------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTTAT..............................................2312.0040.00-1.00---1.00------------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGG.................................................................................2112.002.00----1.00-------1.00-----------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAG..................................................................................2212.002.00---------1.00-------------1.00------------------------------------------
.........................................................................TGCAGGGCAGGCTGTAGGGGATGA...................................................................................2411.001.00------------1.00-----------------------------------------------------
................................................................................CAGGCTGTAGGGGATGAGACTC..............................................................................221.000.00----------------------------------------1.00-------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTA................................................2121.0011.00-0.50----0.50-----------------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGATT..............................................................................2611.004.00---------------------------------------------------1.00--------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTTAA..............................................2311.0040.00-1.00----------------------------------------------------------------
...............................................................................GCAGGCTGTAGGGGATGAGGCCAGCC...........................................................................2611.001.00----------------------------------1.00-------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGCT...............................................................................2511.0018.00-1.00----------------------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGAAT...............................................................................2511.002.00----------------------------------------------1.00-------------------
............................................................................AGGGCAGGCTGTAGGGGATAA...................................................................................211.000.00-------------------------------1.00----------------------------------
.................................TTGGGCACCTCTGGGAG..................................................................................................................................1711.001.00------------------------1.00-----------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGA.................................................................................211.000.00-1.00----------------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCAA..............................................................................2411.002.00----1.00-------------------------------------------------------------
......................................................................................GTAGGGGATGAGGCCAGCCTCAA.......................................................................231.000.00-----------------1.00------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAG..................................................1921.001.00-------------0.50----------------------------------------------0.50-----
............................................................................AGGGCAGGCTGTAGGGGATGAGGA................................................................................2411.004.00-----1.00------------------------------------------------------------
.....................................................................AACCTGCAGGGCAGGCTGTAGGGGATGAA..................................................................................291.000.00------------1.00-----------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCCGTT................................................211.000.00-----------------1.00------------------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAAA.................................................................................221.000.00--------1.00---------------------------------------------------------
..........................................................CTTGCAGAGGGAACCTGAA.......................................................................................................191.000.00-------------------------------------------1.00----------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGCA...............................................................................2511.0018.00-1.00----------------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCAAT.............................................................................2511.002.00-------1.00----------------------------------------------------------
.................................................................................................................TCATCCTCTCCCTGCAGTT................................................1911.001.00--1.00---------------------------------------------------------------
.................................................................................................................................GTTTGTCCTGGGCACAGACAGC.............................2211.001.00--------------------------------------------------1.00---------------
...............................................................................GCAGGCTGTAGGGGATGAGGC................................................................................2111.001.00------------------------------------------------1.00-----------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCTAT.............................................................................2511.002.00-------------------------1.00----------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAGGCC...............................................................................2411.001.00------------------------------------------------------1.00-----------
..............................................................................GGCAGGCTGTAGGGGATGAGGCA...............................................................................2311.002.00---------------------------------------------1.00--------------------
.............................................................................GGGCAGGCTGTAGGGGATGAGGCCA..............................................................................2511.001.00---------1.00--------------------------------------------------------
....AGAGCATGCGTGGGC.................................................................................................................................................................1520.500.50-------------0.50----------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCATTT................................................2120.500.50--0.50---------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAAA.................................................2020.500.50-------------0.50----------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGAT................................................2120.501.00---0.50--------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGCT................................................2120.501.00-----------------------------------------------------------------0.50
...............................................................................................................TCTCATCCTCTCCCTGCAGTAA...............................................2220.5011.00--------------------------------------------------------------0.50---
...............................................................................................................TCTCATCCTCTCCCTGCA...................................................1820.500.50---0.50--------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGGTA...............................................2220.501.00-0.50----------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTGAA..............................................2320.5011.00-----------------------------------------------------------0.50------
...............................................................................................................TCTCATCCTCTCCCTGCAGAATT..............................................2320.501.00----------------------------------------------------------0.50-------

Antisense strand
ATGCAGAGCATGCGTGGGCAGATGCTCCCATCATTGGGCACCTCTGGGAGGTAATAGCCTTGCAGAGGGAACCTGCAGGGCAGGCTGTAGGGGATGAGGCCAGCCTCTCAGTCTCATCCTCTCCCTGCAGTTTGTCCTGGGCACAGACAGCTTCCACCTGGGCTACACGGAGACCGGGCA
........................................................................((((((((........((((((((((((..........))))))))))))))))))))..................................................
.......................................................................72..............................................................136..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR189786DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR040006(GSM532891)
G601N. (cervix)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)
..............................................................CAGAGGGAACCTGCAGTAT................................................................................................... 192.000.00---------------------------------1.00---------------------1.00----------
...............................................................................................................................................CAGACAGCTTCCACCTGG................... 1811.001.00---------------------------------------1.00--------------------------
..................................................................................................GCCAGCCTCTCAGTCTCAT............................................................... 1911.001.00-----1.00------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCC................................................... 181.000.00------------------------------------1.00-----------------------------
..........................................................................................GGGATGAGGCCAGCCTCTGGCT.................................................................... 221.000.00-----------------------------------------------1.00------------------
..................................................................................GGCTGTAGGGGATGAG.................................................................................. 1650.200.20---0.20--------------------------------------------------------------