ID: uc001okr.2
GENE: RAD9A(2)
chr11:67160767-67161016+


(1)
AGO1.ip OTHER.mut
(4)
AGO2.ip
(2)
B-CELL
(3)
BRAIN
(8)
BREAST
(25)
CELL-LINE
(1)
FIBROBLAST
(5)
HEART
(2)
HELA
(3)
LIVER
(2)
OTHER
(22)
SKIN
(1)
XRN.ip

Sense strand
AAGGTAAGCAGGTCTTTCAAGGCATTCCAAGCATAAGGAAGAGCATGAATGAGGCCTAGAAGGATGCCAGTGCCCGAGGTGACGTGGGAGCCCTTTTCCCAGAGTTACATGCTGGGCCCATGATGGGTGTGGGCCTGCATGGGACAGGAGAGCTTGTTGCAGAGATGTGATGCTAGGCTGAGGTGTCTTATCCCATGCAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGA
......................................................................................................................................((((((((((.((((..((((...((..((........))..))..)))).)))).))))))))))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189782SRR029128(GSM416757)
H520. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189786TAX577740(Rovira)
total RNA. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR189787SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAGT.................................................23126.0026.00-6.001.00--2.003.00--1.00-1.00-----1.00---1.00-----1.00--------1.00--1.00--------1.00-----1.00----1.00-1.001.001.00-1.00-----------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTGC..........................................................................................25116.0016.00----------1.00----1.00---2.00----2.00-1.00--1.00-1.00-----1.00---1.00-----------1.00-1.001.00---------------1.00--1.00-
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTT............................................................................................23111.0011.006.00--------------1.001.00-2.00--------------------------1.00-------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTT............................................................................................2419.009.007.00---------1.00---------------------------------------------------------------1.00--
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTG...........................................................................................2419.009.001.00-------------2.00------1.00------1.00--------------1.00------1.00-------1.00---------1.00--------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAG..................................................2218.008.001.00-1.00---------1.00--------------------1.00-1.00----------------1.00-------1.00------------1.00---
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAGA.................................................2317.008.00--------4.003.00-------------------------------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTGT..........................................................................................2515.009.003.00-------------------2.00--------------------------------------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATGCAGA.................................................2214.003.004.00----------------------------------------------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAGCTTGTTGC..........................................................................................2713.003.00---3.00-------------------------------------------------------------------------
............................................................................................................................................GGGACAGGAGAGCTTGTTGC..........................................................................................2013.003.00----3.00------------------------------------------------------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATGCAG..................................................2113.003.00-----------2.00-------------------------------------------------------1.00---------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCATT.................................................232.000.00-----------------1.00-------------------------------1.00---------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAGTAT...............................................2512.0026.00----------------------2.00------------------------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAGCTT...............................................................................................2212.002.00----------------------------------------------1.00------------------------1.00-----
.....................................................................................................................................................................................GGTGTCTTATCCCATGCAGTTT...............................................2212.001.00----1.00-----------------------------------1.00------------------------------------
...................................................................................................................................................................GATGTGATGCTAGGCTGAG....................................................................1912.002.00---2.00-------------------------------------------------------------------------
..................................................................................................................................................................AGATGTGATGCTAGGCTGA.....................................................................1912.002.00-------2.00---------------------------------------------------------------------
..........................................................................CGAGGTGACGTGGGAGCCCT............................................................................................................................................................2012.002.00-------2.00---------------------------------------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAG..................................................................................................1911.001.00--------------------------------1.00--------------------------------------------
......AGCAGGTCTTTCAAGGCATGTAA.............................................................................................................................................................................................................................231.000.00-----------------------1.00-----------------------------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTTT...........................................................................................2511.009.00----------------1.00------------------------------------------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATG.....................................................1811.001.00--1.00--------------------------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATG.....................................................1911.001.00--1.00--------------------------------------------------------------------------
.........................................................................................................................................CATGGGACAGGAGAGCTTGTTGC..........................................................................................2311.001.00------------1.00----------------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCATTT................................................241.000.00------------------------------------------------------------------1.00----------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTTAA..........................................................................................2611.009.00----------------------------------------------------------------------1.00------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTTGCAAT.......................................................................................291.000.00----------------------------------1.00------------------------------------------
................................................................................................................................................................AGAGATGTGATGCTATTTG.......................................................................191.000.00-------------1.00---------------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCACT.................................................231.000.00-----------------------1.00-----------------------------------------------------
...............................................................................................................................................................................................................................ACTGGCGATGCTGGAGA..........1711.001.00----------------------------------------------------------------1.00------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAT..................................................221.000.00------1.00----------------------------------------------------------------------
........................................................TAGAAGGATGCCAGTATTG...............................................................................................................................................................................191.000.00--------------------------------------------1.00--------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGC.................................................................................................1911.001.00----------1.00------------------------------------------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGAT............................................................................................241.000.00--------------------------------------1.00--------------------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATGCAGT.................................................2211.001.00---------------------------------------------------1.00-------------------------
.....................................................................................................................................................................................GGTGTCTTATCCCATGCAGT.................................................2011.001.00---------------------------------------------------------1.00-------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGGT............................................................................................231.000.001.00----------------------------------------------------------------------------
.....................................................................................................................................................................TGTGATGCTAGGCTGAGGTGT................................................................2111.001.00-----1.00-----------------------------------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTCGC..........................................................................................2511.001.00-----1.00-----------------------------------------------------------------------
....................................................................................................................................................................................AGGTGTCTTATCCCATGCAGT.................................................2111.001.00------------------------------------------1.00----------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCCGT.................................................231.000.00-------------1.00---------------------------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTT...........................................................................................2411.0011.001.00----------------------------------------------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAGCTTT..............................................................................................2311.002.00------------------------------1.00----------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGT.............................................................................................2211.001.00-----------------------------------------------1.00-----------------------------
..........................................................GAAGGATGCCAGTGC.................................................................................................................................................................................1570.140.14----------------------------------------------------------------------------0.14
........................................GAGCATGAATGAGGC...................................................................................................................................................................................................1580.120.12-------------------------0.12---------------------------------------------------

Antisense strand
AAGGTAAGCAGGTCTTTCAAGGCATTCCAAGCATAAGGAAGAGCATGAATGAGGCCTAGAAGGATGCCAGTGCCCGAGGTGACGTGGGAGCCCTTTTCCCAGAGTTACATGCTGGGCCCATGATGGGTGTGGGCCTGCATGGGACAGGAGAGCTTGTTGCAGAGATGTGATGCTAGGCTGAGGTGTCTTATCCCATGCAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGA
......................................................................................................................................((((((((((.((((..((((...((..((........))..))..)))).)))).))))))))))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189782SRR029128(GSM416757)
H520. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189786TAX577740(Rovira)
total RNA. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR189787SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
...........................................................................................................CATGCTGGGCCCATGATGGG........................................................................................................................... 2011.001.00-------------------------1.00---------------------------------------------------
.................................TAAGGAAGAGCATGAA......................................................................................................................................................................................................... 161.000.00---------------------------------------------------------------------1.00-------
............................................................................................................................................GGGACAGGAGAGCTTTGTC........................................................................................... 191.000.00--1.00--------------------------------------------------------------------------