ID: hsa-mir-6872
GENE: SEMA3B(5)
chr3:50310529-50310778+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(4)
BRAIN 		(6)
BREAST 		(20)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(6)
HELA 		(1)
KIDNEY 		(2)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTGCTTCTTGCCTCGCAGGCCCTGATCCTTTGGATTCGGTCCGCGCAGAGCGCCAACTGGACATGGTGCTAGAGGTTGGGTGGTCAGACACTGTGATCCCGGGTGCTGTGCCCGCACTACGGGAAGGGGAAGCAGCGCGTGGGTCTCGCATCAGGAGGCAAGGCCAGGACCCGCTGACCCATGCCTCCTGCCGCGGTCAGAGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGAC
.................................................................................................................................................((((..(((((((((.((.(((......)))..)).)))))))))..))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040030(GSM532915)
G013N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038861(GSM458544)
MM466. (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038860(GSM458543)
MM426. (cell line)		SRR189784SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................TCTCGCATCAGGAGGCAAGG.......................................................................................20117.0017.007.003.001.001.00---------2.00---------------------1.00----------------1.00--1.00------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCC.....................................................................................22110.0010.001.006.00-----1.00-------------------------------------1.00-1.00--------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGA......................................................................................2117.0017.00----7.00---------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGC......................................................................................2117.007.002.00------1.00-1.00--------1.00-------------1.00-----------------------1.00-----
...............................................................................................................................................................................................................GTTTGTCAAGGTATTTTGGAT......................2116.006.00---6.00----------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCA....................................................................................2315.005.001.00-------3.00-1.00---------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCT....................................................................................2315.0010.00--3.00---------------------------------1.00----------------1.00--------
......................................................................................................................................................................................................................................CGGAGAGCGAGAACCCAGA.1915.005.00-----5.00--------------------------------------------------------
..................................................................................................................................................................................................................TGTCAAGGTATTTTGGATCCCGGA................2414.004.00--4.00-----------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCAA....................................................................................2313.007.00------------1.00---------1.00--------1.00------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCAT....................................................................................2313.007.00-1.00-----1.00-----------------------------1.00------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAG........................................................................................1913.003.00------1.00--1.00---------------1.00------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCTT...................................................................................2413.0010.00--2.00-------------------------1.00---------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCAT...................................................................................2412.005.00-----------1.00---------1.00----------------------------------------
...........................................................................................................................................................................................................................ATTTTGGATCCCGGAGAGCGAGAACCCA...2812.002.00------1.00--------------------1.00----------------------------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAGA.................................................2112.002.00------1.00---------------------------------------1.00---------------
............................................................................................................................................................................................................................TTTTGGATCCCGGAGAG.............1712.002.00--------------------2.00-----------------------------------------
..............................................................................................................................................GTCTCGCATCAGGAGGCAAGGCA.....................................................................................2312.001.00-2.00------------------------------------------------------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAGT.................................................212.000.00------------1.00-1.00-----------------------------------------------
....................................................................................................................................................................................................................................CCCGGAGAGCGAGAACCC....1812.002.00-----------------2.00--------------------------------------------
.................................................................................................................................................................................CCCATGCCTCCTGCCGCGGTC....................................................2112.002.00--1.00-----------------------------------1.00-----------------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGC......................................................................................2012.002.002.00-------------------------------------------------------------
...................................................................................................................................................................................CATGCCTCCTGCCGCGGTCAGT.................................................222.000.00-----------1.00-------------1.00------------------------------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGCCT....................................................................................221.000.001.00-------------------------------------------------------------
.......................................................................GAGGTTGGGTGGTCAGA..................................................................................................................................................................1711.001.00-----------------------1.00--------------------------------------
......................................................................................................................................................................................................................AAGGTATTTTGGATCCCGGAGAGCG...........2511.001.00-------------------1.00------------------------------------------
..................................................................................................................................................................................................................TGTCAAGGTATTTTGGATCCCGGAGAG.............2711.001.00-------------------------------------------1.00------------------
.......................................................................................................................................................................................CCTCCTGCCGCGGTCGCCA................................................191.000.00------------------------1.00-------------------------------------
...............................................................................................................................................................................................................GTTTGTCAAGGTATTTTGGATCCCGGAG...............2811.001.00-----------------------1.00--------------------------------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGCCAT...................................................................................231.000.001.00-------------------------------------------------------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAAAT................................................221.000.00-----------------------------------------1.00--------------------
...................................................................................................................................................................................CATGCCTCCTGCCGCGG......................................................1711.001.00------------------1.00-------------------------------------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAGTT................................................221.000.00-------------------1.00------------------------------------------
..............................................................................................................................................................................................................................TTGGATCCCGGAGAGCG...........1711.001.00---------------------------------------------------1.00----------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGAA.....................................................................................2211.0017.00------------------------------1.00-------------------------------
...................................................................................................................................................................................CATGCCTCCTGCCGCGGTCAGA.................................................2211.001.00-------------------------------------------------1.00------------
.....................................................................................................................................................................................................................CAAGGTATTTTGGATCC....................1711.001.00---------1.00----------------------------------------------------
......................................................................................................................................................................................................................AAGGTATTTTGGATCCCGGAGA..............2211.001.00---1.00----------------------------------------------------------
..............................................................................................................................................GTCTCGCATCAGGAGGCAAGGCAA....................................................................................2411.001.00-1.00------------------------------------------------------------
.........................................................................................................................................................................................................................GTATTTTGGATCCCGGAGAGCG...........2211.001.00--------------------------------------------1.00-----------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCAGGACC...............................................................................2811.001.00----------------------1.00---------------------------------------
.....................................................................TAGAGGTTGGGTGGTCAGACACTG.............................................................................................................................................................2411.001.00---1.00----------------------------------------------------------
....................................................................................................................................................................................................................................CCCGGAGAGCGAGAACCCAGA.2111.001.00---1.00----------------------------------------------------------
..............................................................................................................................................GTCTCGCATCAGGAGGCAAGGC......................................................................................2211.001.00----------------1.00---------------------------------------------
...............................................................................................................................................................................................................................TGGATCCCGGAGAGCGAGAACC.....2211.001.00----------1.00---------------------------------------------------
..................................................................................................................................................................................CCATGCCTCCTGCCGCGGTCAGA.................................................2311.001.00---------------1.00----------------------------------------------
..........................................................................................................................................................................................................................TATTTTGGATCCCGGAGAGCGAGAAC......2611.001.00---1.00----------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCTA...................................................................................2411.0010.00------------------------------------------1.00-------------------
.....................................................................................................................................AGCGCGTGGGTCTCGCATCAGGAGGCA..........................................................................................2711.001.00-----------------------------1.00--------------------------------
..........................................................................................................................................................................................................................TATTTTGGATCCCGGAGAGC............2011.001.00---------------------------------------1.00----------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGAAA....................................................................................2311.0017.00-1.00------------------------------------------------------------
.................................................................................................................................................TCGCATCAGGAGGCAAGG.......................................................................................1811.001.001.00-------------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCA.....................................................................................2211.007.00-------1.00------------------------------------------------------
..................................................................................GTCAGACACTGTGATCCCGG....................................................................................................................................................2011.001.00----------------1.00---------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCTATT.................................................................................2611.0010.00----------------------------------------1.00---------------------
........................................................CTGGACATGGTGCTAGAGGT..............................................................................................................................................................................2011.001.00--------------1.00-----------------------------------------------
..................................................................................................................................................................................................................................ATCCCGGAGAGCGAGCCGG.....191.000.00--------------------------------------------------1.00-----------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGTAG....................................................................................2311.0017.00------1.00-------------------------------------------------------
......................................................................................................................................................................................GCCTCCTGCCGCGGTCGCCA................................................201.000.00------------------------------------------------1.00-------------
.............................................................................................................................................................................................................................TTTGGATCCCGGAGAGCGAGAACC.....2411.001.00---------------------1.00----------------------------------------
...............................................GAGCGCCAACTGGACATGG........................................................................................................................................................................................1911.001.00----------------------------------1.00---------------------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGCAT....................................................................................2211.002.00---------------------------------1.00----------------------------
.......................................................ACTGGACATGGTGCTAGAAGTC.............................................................................................................................................................................221.000.001.00-------------------------------------------------------------
...................................................................................................................ACTACGGGAAGGGGA........................................................................................................................1520.500.50---------------------------------------------------------0.50----
......................................................................................................................................................................................................................................CGGAGAGCGAGAACC.....1520.500.50----------0.50---------------------------------------------------
...............................................................................................ATCCCGGGTGCTGT.............................................................................................................................................1460.330.33----------------------------------------------------------0.33---
.............................................................................................................................................................................................GCCGCGGTCAGAGCC..............................................1530.330.33------------------------------------------------------------0.33-
...................................................................................................CGGGTGCTGTGCCCG........................................................................................................................................1530.330.33-----------------------------------------------------------0.33--
...................................TCGGTCCGCGCA...........................................................................................................................................................................................................1250.200.20------0.20-------------------------------------------------------
...................................................................................................................................................................................................................................TCCCGGAGAGCGA..........1370.140.14-------------------------------------------------------------0.14
............................................................................................................................................................................................................................................GCGAGAACCCAGAC1490.110.11---------------------------0.11----------------------------------

Antisense strand
CTGCTTCTTGCCTCGCAGGCCCTGATCCTTTGGATTCGGTCCGCGCAGAGCGCCAACTGGACATGGTGCTAGAGGTTGGGTGGTCAGACACTGTGATCCCGGGTGCTGTGCCCGCACTACGGGAAGGGGAAGCAGCGCGTGGGTCTCGCATCAGGAGGCAAGGCCAGGACCCGCTGACCCATGCCTCCTGCCGCGGTCAGAGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGAC
.................................................................................................................................................((((..(((((((((.((.(((......)))..)).)))))))))..))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040030(GSM532915)
G013N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038861(GSM458544)
MM466. (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038860(GSM458543)
MM426. (cell line)		SRR189784SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................................CCCGCTGACCCATGCCTCA.............................................................. 191.000.00------------------------------------------------------1.00-------
.............CGCAGGCCCTGATCCTGA........................................................................................................................................................................................................................... 181.000.00------------------------1.00-------------------------------------
..........................................................................................CTGTGATCCCGGGTGCT............................................................................................................................................... 1711.001.00--------------------------1.00-----------------------------------
..........................................................................................CTGTGATCCCGGGT.................................................................................................................................................. 1450.200.20--------------------------0.20-----------------------------------