sblock177188- 12- and 20-way alignments

sblock177188	chrX:4976268-4976379 -	Candidate
	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 4976272-4976295
   star strand at position 4976354-4976373
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:4976253-4976394 -	GGCGCGCAC-----------------------------------------------------TG--GTGTGTGTGTGTGA--G----T--------------GTGGGT-GGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------AAC----------------------------------AGC-----AGCAAAAACGTGTATAATTTACC-------------------TGAT----------------TTT---TCTACATCT-CACTTACAGTTAGTAATCAAA----TTGCACAA
droSim1	chrX_random:1727169-1727312 -	GGCGCGCAC-----------------------------------------------------TGGTGTGTGTGTGTGTGA--G----T--------------GTGGGT-GGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------AAC----------------------------------AGC-----AGCAAAAACGTGTATAATTTACC-------------------TGAC----------------TTT---TCTACATCT-CACTTACAGTTAGTAATCAAA----TTGCACAA
droSec1	super_4:1770865-1771007 +	GGCGCGCAC-----------------------------------------------------TGGTGTGTGTGTGTGTGA--G----T--------------GTGGGT-GGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------AAC----------------------------------AGC-----AGCA-AAACGTGTATAATTTACC-------------------TGAC----------------TTT---TTTACATCT-CACTTACAGTTAATAATCAAA----TTGCACAA
droYak2	chrX:3486274-3486412 +	GGCGCGCT---------------------------------------------------------TGTGTGTGTGTGTGA--G----T--------------GTGGGT-GGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------AAC----------------------------------AGC---AAAACT-AAGCGCGTATAATTTACT-------------------TGAT----------------TTT---TCTACAT---CACTTACAGTTAGTAATCAAA----TTGCACAA
droEre2	scaffold_4690:2335787-2335926 -	GGCGCGCGC-----------------------------------------------------T--TGTGTGTGTGTGCGA--G----T--------------GTGGGT-GGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------AAC----------------------------------AGC-----AGCAAAAACGTGTATAATTTACC-------------------TGAT----------------TTT---TCTACATCC---CTTACAGTTAGTAATCAAA----TTGCACAA
droAna3	scaffold_13417:338832-338976 -	TGTGgGTGtGtGtg--------------GTtTG----TGT----------------------G--TGTGTGTGtGTGTGt--G--TGT--------------GGGAGGAGGAAAAGCGGATTTCGTAAAACGCATTTACTAATTTTCTT-AAAAAT-------------------------AACAAAAAC-----AACA-AAACGTGT--------------------------------------------------------------TT-CCATTACAGTTAG--AACCAA----TTGCACAA
dp4	Unknown	CGCGTGCGT-----------------------------------------------------ATGTGTGTGTGTATGTGC--A----T--------------GCGAGG-GGGGATATGGATTCTGTAAAACGttTTTtTTtTtTTtTt-T---gTt-------------------------------TTt----------tTT-----------tggttTTTtTTtttTttTGTGTTTGTG----------------TTTTCTTTTGTATCCAAAATTGCAGT-AG--AATCAA----TTGCACtt
droPer1	Unknown	CGCGTGCGT---------------------------------------------------------GTATGTGTATGCGA--------------------------GG-GGGGATATGGATTCTGTAAAACGAATTTATTATATCTAT-T---AAT-------------------------------TCC----------CAA----------------TTTATTAAATATTGTGTTTGTG----------------TTTTCTTTTGTATCCAAAATTGCAGT-AG--AATCAA----TTGCACAA
droWil1	Unknown	AGTGTGCGACTGAGAGCGAGTGAGAAAGAGTGAG-----AAC--------------------ATGTGTGAGTGTGTGTGA--G----T--------------GTTTGT-GTGAAAGAGTATTTCGTAAAACGCtTTTtTTttTttttt-T---tttTgtttTtttttCAAAACACATGCAATGGAAAAACAACTAAACAAAATCATCTTTAACTtTTTtttttttttttttTttTtTTTTGATTGAATTTTGGTTTCTTTTATTTTGTACTTTTATTTGCAGT-AG--AACAAAAATTTTGCACAA
droVir3	Unknown	CGCGCGCGTATTTGCCATTGTGTGgGTGgGTtgG---TGgGTt------------------TG--TGTG--TGTGTGTGCCAGAGCGAAGGCAGCAGGCAGGAAGAGC-GAGCAAATGATTTTTGTAAAACGCATTTACTAATT------ACA----------------------------------AAT----------------------------------------------------------------------------------------------AC-----A-------AATACAA
droMoj3	scaffold_6359:1208184-1208217 -	CGCGCGCGTATTTGCGTTTGTGTGgGTGgGTGgG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	Unknown	CGCGCGCGTATTTGCCATTGTtTGTGTGgGggTGTTGTgTgTTgtTtTtTtTtTtTtTtTGTG--TGTG------------------T--------------GTGTGT-GTCAGAGTGGAATTTGTAAAACGCATTTACTTATT------AAC----------------------------------GAA-----AACA-AAATGTGAACAAATA-TT-------------TAT---AGAT----------------ATG---TGTAAATTT-AAAA--TACT-CG--CACAAA----TTGCATAA

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:4976253-4976394 -	NA	G-------GCGCGCAC-------------------TGGTG--TGTGT----G--TGTGAGTGTGGGT---------------------------------GGAAAATCGGATTTCGTAAAACGCATTTAATT----------------------------------G--------------------------------TT--AACAGCAGCAAAA-----A-----------CGTGT--ATAATTTACCTGAT----T-TTTC----TA-CATCTCACTTACAGTTAGTAATC--AAATTGCA---CAA
droSim1	chrX_random:1727169-1727312 -	7	G-------GCGCGCAC-------------------TGGTG--TGTGT--GTG--TGTGAGTGTGGGT---------------------------------GGAAAATCGGATTTCGTAAAACGCATTTAATT----------------------------------G--------------------------------TT--AACAGCAGCAAAA-----A-----------CGTGT--ATAATTTACCTGAC----T-TTTC----TA-CATCTCACTTACAGTTAGTAATC--AAATTGCA---CAA
droSec1	super_4:1770865-1771007 +	2	G-------GCGCGCAC-------------------TGGTG--TGTGT--GTG--TGTGAGTGTGGGT---------------------------------GGAAAATCGGATTTCGTAAAACGCATTTAATT----------------------------------G--------------------------------TT--AACAGCAGCA-AA-----A-----------CGTGT--ATAATTTACCTGAC----T-TTTT----TA-CATCTCACTTACAGTTAATAATC--AAATTGCA---CAA
droYak2	chrX:3486274-3486412 +	5	G-------GCGCGCTT-------------------GTGTG--TGT------G--TGTGAGTGTGGGT---------------------------------GGAAAATCGGATTTCGTAAAACGCATTTAATT----------------------------------G--------------------------------TT--AACAGC---A-AAACTAAG-----------CGCGT--ATAATTTACTTGAT----T-TTTC----TA-CAT--CACTTACAGTTAGTAATC--AAATTGCA---CAA
droEre2	scaffold_4690:2335787-2335926 -	14	G-------GCGCGCGC-------------------TTGTG--TGTGT----G--TGCGAGTGTGGGT---------------------------------GGAAAATCGGATTTCGTAAAACGCATTTAATT----------------------------------G--------------------------------TT--AACAGCAGCAAAA-----A-----------CGTGT--ATAATTTACCTGAT----T-TTTC----TA-CAT--CCCTTACAGTTAGTAATC--AAATTGCA---CAA
droEug1	scf7180000409548:787929-788067 -	25	G-------GCGCGCGC-------------------GTACT--TGTGT--GTG--TGCGTGTGTGGGT---------------------------------GGAAAATACGATTTCGTAAAACGCATTTCATT----------------------------------G--------------------------------TT--AACA-------AA-----A-----------CGTGTG-TTAATTTACCTAAA---CT-TTTC----TT-TAC--CTTTTACAGTTAGTAATCAAAAATTGCA---CAA
droBia1	scf7180000301760:317175-317313 -	4	G-------GCGCGCGC-------------------CTGTG--TGTGT--GTG--TGTGTGGGTGGGT---------------------------------GGAAAATCCGATTTCGTAAAACGCATTTAATT----------------------------------G--------------------------------TA--AGCAACAACAAAA-----A-----------CGTGT--GTAATTTACCTGCT----TCTTTC----CA-TAT--CGTTTACAGTTAGTA------AATTGCA---CAA
droTak1	scf7180000415352:1030839-1030982 +	4	G-------GCGCGCGC-------------------CCATG--TGTGC--GTG------TGTGTGGGT---------------------------------GGAAAATCGGATTTCGTAAAACGCATTTAATT----------------------------------G--------------------------------TT--AACAACAACAAGA-----A-----------CGTGT--GTAATTTACCTGAT----T-TTTTTTTCTC-AATTTCCCTTACAGTTAGTAATC--AAATTGCA---CAA
droEle1	scf7180000491272:492430-492559 +	1	G-------GCGCGCGT-------------------ATGTG--TGT--------------GTGTGGGT---------------------------------GGAAAATCCGATTTCGTAAAACGCATTTAATT----------------------------------G--------------------------------TT--AATAAC---A-AA-----A-----------CGTGGGTGTAATTTACATGAT----T-TTTC----TA-CAT--TATTCACAGTTAGTAAGC--AAACTGCA---CAA
droRho1	scf7180000776532:19535-19662 +	1	G-------GCGCGTGT-------------------TTGTG--T----------------GTGTGGAT---------------------------------GAAAAATTCGATTTCGTAAAACGCATTTAATT----------------------------------G--------------------------------TT--AACAAC---A-AA-----A-----------CGTGTATGTAATTTACCTGAT----T-TTTC----TA-CAT--TATTTACAGTTAGTAAGC--AAGCTGCA---CAA
droFic1	scf7180000454045:81404-81534 -	18	G-------GCGCGCGC-------------------GTATG--TGT--------------GTGTGGGT---------------------------------GGAAAATCCGATTTCGTAGAACGCATTTAATT----------------------------------G--------------------------------TT--AACAACAACA-AA-----T-----------CGTGT--CTAATTTACCTGAC----T-TTTC----TA-TAT--CATTTTCAGTTAGTAATT--AAATTGCA---CAA
droKik1	scf7180000302469:619020-619157 -	23	ACTAGTTCGTGTGAGT-------------------GTATG--TGT--------------GTGTGAGA------TCTCCTGAATAGGTTTCTGTGTGTG-TG-------TGATTTCGTAAAACGCATTTAAAT---------T-----------------------TG--------------------------------TT--AATAAA---AAAA-----A-----------CGTGT--GTA-TTTAT-----------------------------CTTACAGTTAG--AAC--CAATTGCA---CAA
droAna3	scaffold_13417:338832-338967 -	24	G-------AGACGTAT-------------------GTGTG--TGTGT--GTGAGTGTGAGTGTGGGA------G------------------------GAGGAAAAGCGGATTTCGTAAAACGCATTTACTA-----ATT-T-----------------------TCTTAAAAATAA-------------------------CAAAAACAACA-AA-----A-----------CGTGT------------------------------------TTCCATTACAGTTAG--AAC--CAATTGCA---CAA
droBip1	scf7180000396573:132829-133007 +	13	C-------TCGCGCGCGTGTTAGTGCTAAGTGTGTGTGTGTGTGTGT--GTG--TGTGTGTGTGTGT--GGAAA------------------------ACGGAAAAATGGATTTCGTAAAACGCATTTACTA-----ATTTT-----------------------TCTTAAAAATAATAATAA-------AATCAACAACTACAACAACAACAACA-----T-----------TGTGT------------------------------------TTCCATTACAGTTAG--AAC--CAATTGCA---CAA
dp4	chrXL_group1e:6745504-6745680 -	35	C-------GCGTGCGT-------------------ATGTG--TGTGT--GTA--TGTGCATGCGAGG--GGGGATATGCATATTTGTTA------ATG-TGCTAGGAACGATTCTGTAAAACGAATTTATTA----------------------------------T-----------ATTAT-------ATCTA----TT--AATTAC---C-AA-----TTTATTAAATAATGTGT-----------TTGTG----T-TTTCTTT-TGTATCCAAAATTGCAGT-AG--AAT--CAATTGCA---CAA
droPer1	super_20:728747-728881 +	17	GT------GTGCGTGT---------------------GT----GTGT--GCG--TGTGTGTGTAAAA---------------------------------AGAAAAAAGGATTTCGTAAAAACAAATCAAAC----------------------------------A-------T---AACATTATGTTGG--------CC--C---ACGGCA-AA-----GCG---AA----CT--A--ATAAATTTCCAAGC----A-AATC----CA-CA---------------AAAATC--A-AATG-----CAA
droWil1	scaffold_180777:148015-148154 +	21	T-------GCGTGTGT-------------------GTGTG--TGTGT--GTG--TGTGTGTGTGTGT---------------------------------GTGTG---TGTGTGTGTGTAGCACTTCCGTTC-----CAT-T-----------------------TACAACAAACAC-------------------------AAAGAAGAACA-A----------------------T--ATCAGCTCCCTTTT----T-TTTT----TT-TGT--TATTTTCATTTTTT--------TCTATG---CAG
droVir3	scaffold_12963:15848081-15848201 -	124	G--------TGTGCAT-------------------GTGTG--TGCGT----G--TGTGTGTGTGTGTGCAAAAATATGCAAATCGGTTT-------TG-CACTGCTGACG------------------ACTT----------------------------------C--------------------------------TT--CACAGCAGCTGAA-----A-----------TGTGC--TTAAAATTC--GCAAAATT-GT------------------------------------AGTTCA---TTT
droMoj3	scaffold_6496:18207583-18207733 -	117	G-------ACACAGTC-------------------TGTCG--TGTGTGTGTG--TGTGTGTCTGTGT---------------------------------GTA-TTTCCTTTCTTGTTAAGCTGCTTTGGCTTTTCAATT-TTATTCCTGTATTTGCGTGTCCAATG--------------------------------TT--CAAATTAGCA-AA-----A-----------TGTAC--A--A-------------------------------------GCAGTAAATATCT--ACATTACATGGCCA
droGri2	scaffold_15252:15271605-15271725 -	108	T-------GTGTATGT-------------------GTGTG--TGTGT--CTA--TGTTATCGTTTGC--TG-------------------------------------TGA-CTTGCAAATAAAATTTGACT----------------------------------A--------------------------------CT--GCTAAC------------A-----------GT------TATCTCTCTCTCT----C-TCTC----TC-TGTCGCACACACATTTA-----C--ACAGTGCA---AGT

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

GGCGCGCAC-----------------------------------------------------TG--GTGTGTGTGTGTGA--G----T--------------GTGGGT-GGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------AAC----------------------------------AGC-----AGCAAAAACGTGTATAATTTACC-------------------TGAT----------------TTT---TCTACATCT-CACTTACAGTTAGTAATCAAA----TTGCACAA

Size

Hit Count

Total Norm

droSim1

GGCGCGCAC-----------------------------------------------------TGGTGTGTGTGTGTGTGA--G----T--------------GTGGGT-GGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------AAC----------------------------------AGC-----AGCAAAAACGTGTATAATTTACC-------------------TGAC----------------TTT---TCTACATCT-CACTTACAGTTAGTAATCAAA----TTGCACAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
................................................................ATGTGTCTGTGTGTGA--G----T--------------............................................................................................................................................................................................................	18	1	2.00	0.00	0.00	2.00	0.00
.................................................................TGTTTGTGTGTGTGG--G----T--------------G...........................................................................................................................................................................................................	18	2	1.00	0.00	1.00	0.00	0.00
.......................................................................TGTTTGTGT--G----T--------------GTGGGT-G....................................................................................................................................................................................................	18	2	1.00	0.00	1.00	0.00	0.00
.................................................................GCTGTGTGTGTGTGA--G----T--------------G...........................................................................................................................................................................................................	18	2	1.00	0.00	0.00	0.00	1.00
...................................................................TGTGTGTGTGCGA--G----A--------------GTG.........................................................................................................................................................................................................	18	3	0.33	0.00	0.33	0.00	0.00
..............................................................TGGTxTGTGTGTGTGTTA--G----T--------------............................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.......................................................................TGTGTGTGT--G----T--------------GTGGTT-G....................................................................................................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00
..................................................................................................................................................................................................................................................................TT---TCTACATCT-CACTTACAGTT......................	22	1	1.00	1.00	0.00	0.00	0.00
....................................................................GTGTGTGTGTGC--G----T--------------GTGT........................................................................................................................................................................................................	18	4	0.25	0.25	0.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGG--T----T--------------G...........................................................................................................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00
...................................................................TGTGTGTGTGTTA--G----T--------------GTT.........................................................................................................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
.....................................................................TGTGTGTGTGT--G----T--------------GTGGTT-.....................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................................................................................................................................TTT---TCTACATCT-CACTTACAGT.......................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTGG........................................................................................................................................................................................................	19	3	0.33	0.33	0.00	0.00	0.00
.................................................................................................................................................................................................................................................................TTT---TCTACATCT-CACTTACAG........................	21	1	1.00	0.00	1.00	0.00	0.00
......CGC-----------------------------------------------------TGGTGTGTGTGTGGG.....................................................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.....................................................................TGTGTGTGTGT--G----T--------------GTGGT.......................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTGGT.......................................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...............................................................TGTGTGTGTGTGTGTGT--G----T--------------............................................................................................................................................................................................................	19	5	0.20	0.20	0.00	0.00	0.00
..................................................................GTGCGTGTGTGTGA--G----T--------------GG..........................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..................................................................GTGTGTGTGTGCGT--G----T--------------GT..........................................................................................................................................................................................................	18	4	0.25	0.25	0.00	0.00	0.00
.........................................................................TGTGGGT--G----x--------------GTGGGT-GGAA.................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..........................................................................GAGTxx--G----T--------------TTGGGT-GGAAAA...............................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTGCGT-.....................................................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTG.........................................................................................................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00
...............................................................TGTGTGTGTGTGTGTGA--G----C--------------............................................................................................................................................................................................................	19	2	0.50	0.00	0.00	0.50	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------G...........................................................................................................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00
.......................................................................TGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00
.................................................................TGTCTGTGTGTGTGT--G----T--------------GT..........................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.......................................................................TGTGTGTGT--G----T--------------GTGTGT-GG...................................................................................................................................................................................................	19	3	0.33	0.33	0.00	0.00	0.00
.....................................................................TGTGTGTGTGA--G----T--------------GTATGT-.....................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------GTGCG.......................................................................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGA--G----T--------------G...........................................................................................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------GG..........................................................................................................................................................................................................	19	3	0.33	0.33	0.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------GT..........................................................................................................................................................................................................	19	5	0.20	0.20	0.00	0.00	0.00
................................................................GTGTGTGTGTGCGTGT--G----T--------------............................................................................................................................................................................................................	18	4	0.25	0.25	0.00	0.00	0.00
.................................................................TGTGTGTGCGTGTGA--G----C--------------G...........................................................................................................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTGT........................................................................................................................................................................................................	19	5	0.20	0.20	0.00	0.00	0.00
.................................................................TGTGTGTGTGCGAGA--G----T--------------G...........................................................................................................................................................................................................	18	3	0.33	0.00	0.33	0.00	0.00
...............................................................TGTGTGTGTGTGTGTGG--G----T--------------GT..........................................................................................................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
......................................................................GTGTGTGGGC--G----T--------------GTGGGT-.....................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.................................................................TATGTGTGTGTGTGA--G----T--------------GC..........................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...............................................................TGTGTGTGTGTGTGTGT--G----...........................................................................................................................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00
.................................................................AGTGTGTGTGAGTGA--G----T--------------G...........................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.....GCTC-----------------------------------------------------TxGTGTGTGTGTGTGT....................................................................................................................................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
..............................................................TGTTGTGTGTGTGTGTGT--G----T--------------............................................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.....................................................................TGTGTGTGTGT--G----T--------------GTGTGT-.....................................................................................................................................................................................................	19	5	0.20	0.20	0.00	0.00	0.00
.....................................................................TGTGTGTGTGT--G----T--------------GTGGGT-GT...................................................................................................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
.....................................................................TGTGTGTGTGT--G----T--------------GTGTG.......................................................................................................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00

droSec1

GGCGCGCAC-----------------------------------------------------TGGTGTGTGTGTGTGTGA--G----T--------------GTGGGT-GGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------AAC----------------------------------AGC-----AGCA-AAACGTGTATAATTTACC-------------------TGAC----------------TTT---TTTACATCT-CACTTACAGTTAATAATCAAA----TTGCACAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...................................................................TGTGTGTGTGTGT--G----T--------------GTG.........................................................................................................................................................................................................	18	10	0.80	0.00	0.00	0.80
.......................................................................TGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	18	10	0.80	0.00	0.00	0.80
...............................................................TGTGTGTGTGTGTGTGT--G----...........................................................................................................................................................................................................................	18	10	0.80	0.00	0.00	0.80
.................................................................TGTGTGTGTGTGTGT--G----T--------------G...........................................................................................................................................................................................................	18	10	0.80	0.00	0.00	0.80
.....................................................................TGTGTGTGTGT--G----T--------------GTGTG.......................................................................................................................................................................................................	18	10	0.80	0.00	0.00	0.80
......................................................................GTGTGTGTGT--G----T--------------GTGTGT-.....................................................................................................................................................................................................	18	8	0.88	0.38	0.00	0.50
..................................................................GTGTGTGTGTGTGT--G----T--------------GT..........................................................................................................................................................................................................	18	8	0.88	0.38	0.00	0.50
....................................................................GTGTGTGTGTGT--G----T--------------GTGT........................................................................................................................................................................................................	18	8	0.88	0.38	0.00	0.50
................................................................GTGTGTGTGTGTGTGT--G----T--------------............................................................................................................................................................................................................	18	8	0.88	0.38	0.00	0.50
..................................................................GTGTGTGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	23	3	2.00	0.67	0.00	1.33
...............................................................TGTGTGTGTGTGTGTGT--G----T--------------GTG.........................................................................................................................................................................................................	22	4	1.50	0.75	0.25	0.50
.................................................................TGTGTGTGTGTGTGT--G----T--------------GTGTG.......................................................................................................................................................................................................	22	4	1.50	0.75	0.25	0.50
.................................................................TGTGTGTGTGTGTGT--G----T--------------GTG.........................................................................................................................................................................................................	20	6	1.00	0.17	0.00	0.83
.....................................................................TGTGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	20	6	1.00	0.17	0.00	0.83
................................................................GTGTGTGTGTGTGTGT--G----T--------------GTGTG.......................................................................................................................................................................................................	23	3	2.00	0.67	0.00	1.33
.................................................................TGTGTGTGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	24	1	6.00	3.00	0.00	3.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	22	4	1.50	0.75	0.25	0.50
...............................................................AGTGTGTGTGTGTGTGA--G----T--------------GTGTG.......................................................................................................................................................................................................	24	1	6.00	0.00	0.00	6.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTGTG.......................................................................................................................................................................................................	20	6	1.00	0.17	0.00	0.83
...............................................................TGTGTGTGTGTGTGTGT--G----T--------------G...........................................................................................................................................................................................................	20	6	1.00	0.17	0.00	0.83
...............................................................AGTGTGTGTGTGTGTGT--G----T--------------GT..........................................................................................................................................................................................................	21	1	5.00	1.00	1.00	3.00
..................................................................GTGTGTGTGTGCGT--G----T--------------GT..........................................................................................................................................................................................................	18	4	1.00	0.00	1.00	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------GTGT........................................................................................................................................................................................................	21	4	1.00	0.25	0.00	0.75
....................................................................GTGTGTGTGTGC--G----T--------------GTGT........................................................................................................................................................................................................	18	4	1.00	0.00	1.00	0.00
.........................................................................TGTGGGT--G----x--------------GTGGGT-GGAA.................................................................................................................................................................................................	18	1	4.00	0.00	1.00	3.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------GT..........................................................................................................................................................................................................	19	7	0.57	0.29	0.00	0.29
................................................................GTGTGTGTGTGCGTGT--G----T--------------............................................................................................................................................................................................................	18	4	1.00	0.00	1.00	0.00
.....................................................................TGTGTGTGTGT--G----T--------------GTGTGT-.....................................................................................................................................................................................................	19	7	0.57	0.29	0.00	0.29
...............................................................TGTGTGTGTGTGTGTGT--G----T--------------............................................................................................................................................................................................................	19	7	0.57	0.29	0.00	0.29
...................................................................TGTGTGTGTGTGT--G----T--------------GTGTGT-.....................................................................................................................................................................................................	21	4	1.00	0.25	0.00	0.75
...............................................................TGTGTGTGTGTGTGTGT--G----T--------------GT..........................................................................................................................................................................................................	21	4	1.00	0.25	0.00	0.75
...................................................................TGTGTGTGTGTGT--G----T--------------GTGT........................................................................................................................................................................................................	19	7	0.57	0.29	0.00	0.29
......................................................................GTGGGTGTGA--G----T--------------GTGGGT-GGTA.................................................................................................................................................................................................	22	1	3.00	0.00	0.00	3.00
....................................................................GTGTGGGTGTGx--G----T--------------GTGGGT-.....................................................................................................................................................................................................	19	2	1.50	1.50	0.00	0.00
.................................................................CGTGCGTGTGTGTGA--G----T--------------G...........................................................................................................................................................................................................	18	1	3.00	0.00	0.00	3.00
......................................................................GTGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	19	7	0.43	0.00	0.29	0.14
................................................................GTGTGTGTGTGTGTGT--G----T--------------G...........................................................................................................................................................................................................	19	7	0.43	0.00	0.29	0.14
....................................................................GTGTGTGTGTGT--G----T--------------GTGTG.......................................................................................................................................................................................................	19	7	0.43	0.00	0.29	0.14
..................................................................GTGTGTGTGTGTGT--G----T--------------GTG.........................................................................................................................................................................................................	19	7	0.43	0.00	0.29	0.14
................................................................GTGTGTGTGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	25	1	3.00	1.00	0.00	2.00
................................................................GTGTGTGTGTGTGTGT--G----T--------------GTGTGT-.....................................................................................................................................................................................................	24	1	3.00	2.00	1.00	0.00

droYak2

GGCGCGCT---------------------------------------------------------TGTGTGTGTGTGTGA--G----T--------------GTGGGT-GGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------AAC----------------------------------AGC---AAAACT-AAGCGCGTATAATTTACT-------------------TGAT----------------TTT---TCTACAT---CACTTACAGTTAGTAATCAAA----TTGCACAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................................................................................................................................................................................................AT----------------TTT---TCTACAT---CACTTACAGT.......................	22	1	3.00	2.00	1.00	0.00	0.00	0.00
................................................................................................................................................................................................................................................T----------------TTT---TCTACAT---CACTTACAGT.......................	21	1	2.00	0.00	0.00	1.00	1.00	0.00
.................................................................TTTGTGTGTGTGTGT--G----T--------------G...........................................................................................................................................................................................................	18	6	0.33	0.33	0.00	0.00	0.00	0.00
......TT---------------------------------------------------------TGTGTGTGTGTGTGT--G----...........................................................................................................................................................................................................................	18	6	0.33	0.33	0.00	0.00	0.00	0.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTGA........................................................................................................................................................................................................	19	4	0.50	0.50	0.00	0.00	0.00	0.00
...................................................................TTTGTGTGTGTGT--G----T--------------GTG.........................................................................................................................................................................................................	18	6	0.33	0.33	0.00	0.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------GA..........................................................................................................................................................................................................	19	4	0.50	0.50	0.00	0.00	0.00	0.00
...................................................................................................................................................................................................................ATTTGCT-------------------TGAT----------------TTT---TCGA.......................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................GTGTGTGTGCGTGT--G----T--------------GT..........................................................................................................................................................................................................	18	5	0.20	0.00	0.00	0.00	0.20	0.00
...............................................................................................................................................................................................................................................AT----------------TTT---TATACAT---CACTTAGAG........................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................GTGTGTGTGC--G----T--------------GTGTGT-.....................................................................................................................................................................................................	18	5	0.20	0.00	0.00	0.00	0.20	0.00
.......T---------------------------------------------------------TGTGTGTGTGCGTGC--G----T--------------GT..........................................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................GTGTGTGTGTGTGT--G----T--------------GTGTGT-.....................................................................................................................................................................................................	22	5	0.20	0.00	0.00	0.00	0.20	0.00
.................................................................TGTGTGTGTGCGTGT--G----T--------------GT..........................................................................................................................................................................................................	19	4	0.25	0.00	0.00	0.25	0.00	0.00
...TTGCT---------------------------------------------------------TGTGTGTGTGTGT....................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................TGTGTGTGTGTTTGG--G----T--------------GTG.........................................................................................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50	0.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTGTG.......................................................................................................................................................................................................	20	9	0.11	0.11	0.00	0.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------G...........................................................................................................................................................................................................	18	13	0.08	0.00	0.00	0.08	0.00	0.00
.......G---------------------------------------------------------TGTGAGTGTGTGTGA--G----T--------------............................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................GTGGGTGTGTGG--G----T--------------GTGGGT-.....................................................................................................................................................................................................	20	2	0.50	0.00	0.00	0.50	0.00	0.00
..................................................................GTGTGTGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	23	5	0.20	0.00	0.00	0.20	0.00	0.00
.......G---------------------------------------------------------TGTGTGTGTGTGTGC--G----T--------------GT..........................................................................................................................................................................................................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
....................................................................GTGTGTGTGTGA--G----T--------------GTGGGA-GC...................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................TGTGTGTGCGTGTGA--G----T--------------GA..........................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.....TTT---------------------------------------------------------TGTGTGTGTGTGTGA--G----T--------------............................................................................................................................................................................................................	20	2	0.50	0.00	0.00	0.50	0.00	0.00
.................................................................TGTGTGTGTGTTTGA--T----T--------------G...........................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................CTGTGTGCGTGA--G----T--------------GTGG........................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------GTGT........................................................................................................................................................................................................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
..................................................................GTGAGTGAGTGTGA--G----T--------------GT..........................................................................................................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00	0.00
.......................................................................TGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	18	13	0.08	0.00	0.00	0.08	0.00	0.00
......CT---------------------------------------------------------TGCGTGGGTGTGTGA--................................................................................................................................................................................................................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................................TGTGTGTGTGT--G----T--------------GTGTG.......................................................................................................................................................................................................	18	13	0.08	0.00	0.00	0.08	0.00	0.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTGTGT-.....................................................................................................................................................................................................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTT.........................................................................................................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00	0.00
.................................................................................................................AATCGGATTTCGTAAAACGCATTTA........................................................................................................................................................................	25	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................................TGTGTGTGTGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	20	9	0.11	0.11	0.00	0.00	0.00	0.00
..................................................................GTGTGCGTGTGTGT--G----T--------------GT..........................................................................................................................................................................................................	18	5	0.20	0.00	0.00	0.20	0.00	0.00
..................................................................GTGTGTGTGTGTGC--G----T--------------GTGT........................................................................................................................................................................................................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
.....................................................................TGTGTGTGTGC--G----T--------------GTGTGT-.....................................................................................................................................................................................................	19	4	0.25	0.00	0.00	0.25	0.00	0.00
......................................................................GTGAGTGTGA--G----T--------------GTGAGT-.....................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................GTGGGTGTGTGG--G----T--------------GTGGGT-G....................................................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------GTG.........................................................................................................................................................................................................	20	9	0.11	0.11	0.00	0.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------T...........................................................................................................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00	0.00
.....TTT---------------------------------------------------------TGTGTGTGTGTGTGA--G----...........................................................................................................................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00	0.00
..................................................................GTGTGTGTGTGTGC--G----T--------------GT..........................................................................................................................................................................................................	18	4	0.25	0.00	0.00	0.25	0.00	0.00
...................................................................TGTGTGTGTGTGT--G----T--------------GTG.........................................................................................................................................................................................................	18	13	0.08	0.00	0.00	0.08	0.00	0.00
.................................................................TCTGTGTGCGTGTGA--G----T--------------GT..........................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................TGCGTGTGTGCGTGA--G----T--------------GT..........................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

GGCGCGCGC-----------------------------------------------------T--TGTGTGTGTGTGCGA--G----T--------------GTGGGT-GGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------AAC----------------------------------AGC-----AGCAAAAACGTGTATAATTTACC-------------------TGAT----------------TTT---TCTACATCC---CTTACAGTTAGTAATCAAA----TTGCACAA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..................................................................GTGTGTGTGTGCGT--G----T--------------GTC.........................................................................................................................................................................................................	19	9	0.33	0.11	0.00	0.00	0.22
......................................................................GTGTGTGCGT--G----T--------------GTGTGT-.....................................................................................................................................................................................................	18	11	0.27	0.00	0.00	0.27	0.00
..............................................................T--TGTGTGTGTGTGTGT--G----T--------------GTG.........................................................................................................................................................................................................	21	10	0.20	0.00	0.00	0.20	0.00
.................................................................TGTGTGTGTGTGTGT--G----T--------------GTGG........................................................................................................................................................................................................	21	10	0.10	0.00	0.00	0.10	0.00
.................................................................TGTGTGTGTGTGCGT--G----T--------------GTTGG.......................................................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................................GTGTGTGTGTGCGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	23	6	0.17	0.00	0.00	0.00	0.17
.................................................................TGTGTGTGTGTGTGA--G----T--------------GA..........................................................................................................................................................................................................	19	7	0.14	0.00	0.00	0.00	0.14
....................................................................GTGTGAGTGCGA--G----T--------------GCGGGT-G....................................................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.GCGCGCGT-----------------------------------------------------G--TGTGTGTGT........................................................................................................................................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
..................................................................GTGTGTGTGTGCGT--G----T--------------GTGTG.......................................................................................................................................................................................................	21	8	0.13	0.00	0.00	0.13	0.00
..............................................................G--TGTGTGTGTGTGCGA--G----T--------------GTG.........................................................................................................................................................................................................	21	6	0.17	0.00	0.00	0.17	0.00
....................................................................GTGTGTGTGCGT--G----T--------------GTGT........................................................................................................................................................................................................	18	11	0.09	0.00	0.00	0.09	0.00
..................................................................GTGTGTGTGCGCGA--G----T--------------GT..........................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................................GTGTGTGCGTGCGT--G----T--------------GT..........................................................................................................................................................................................................	18	9	0.11	0.00	0.00	0.11	0.00
.............................................................................................................................................GAT------AAC----------------------------------AGC-----AGCAACAACGT....................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.................................................................TGTGTGTGTGTGCGA--G----T--------------GT..........................................................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.................................................................TGTGTGTGTGTGGGT--G----T--------------GTGG........................................................................................................................................................................................................	21	6	0.17	0.00	0.00	0.17	0.00
.................................................................TGTGTGCGTGTGCGT--G----T--------------GTG.........................................................................................................................................................................................................	20	6	0.17	0.00	0.00	0.17	0.00
....CGTGC-----------------------------------------------------G--TGTGTGTGTGTGCG...................................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.................................................................TGTGTGTGTGTGTGA--G----T--------------GAG.........................................................................................................................................................................................................	20	6	0.17	0.00	0.00	0.00	0.17
..........................................................................GTGCGA--G----T--------------CTCGGT-GGAA.................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
...................................................................TGTGTGTGTGTGA--G----T--------------GTG.........................................................................................................................................................................................................	18	14	0.07	0.00	0.00	0.07	0.00
.................................................................TGTGTGTGTGTGTGA--G----T--------------GC..........................................................................................................................................................................................................	19	9	0.11	0.00	0.00	0.00	0.11
.................................................................TGTGTGTGTGTGCGA--G----T--------------GAGAGT-.....................................................................................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................................................TGTGTGAGA--G----T--------------GTGTGT-GG...................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...GTGCGC-----------------------------------------------------T--TGTGTGTGTGTTC....................................................................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.................................................................TGTGTGTGTGTGAGT--G----T--------------G...........................................................................................................................................................................................................	18	14	0.07	0.00	0.00	0.07	0.00
.....................................................................TGTGTGTGCGA--G----T--------------GTGTG.......................................................................................................................................................................................................	18	7	0.14	0.00	0.00	0.00	0.14
.........................................................................................................................................AATTGTG------AAC----------------------------------AGC-----AGCAG..........................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.................................................................TGTGTGTGTGTGCGA--G----T--------------GTGTG.......................................................................................................................................................................................................	22	5	0.20	0.00	0.00	0.20	0.00
.................................................................TGTGTGTGTGTGCGT--G----A--------------GTG.........................................................................................................................................................................................................	20	6	0.17	0.00	0.00	0.17	0.00
.................................................................CGTGTGTGTGTGCGT--G----T--------------GT..........................................................................................................................................................................................................	19	9	0.11	0.00	0.00	0.00	0.11
....................................................................GTCTGTGTGCGA--G----T--------------GTGGGT-.....................................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
...................................................................TGCGTGTGTGCGT--G----T--------------GTG.........................................................................................................................................................................................................	18	8	0.13	0.00	0.00	0.00	0.13
.......GC-----------------------------------------------------T--CGTGTGTGTGTGTGA--................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................................................AGTGTGCGA--G----T--------------GTGTGT-G....................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
......................................................................GTGTGTGCGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	19	11	0.09	0.00	0.00	0.09	0.00
.....................................................................TCTGTGTGCGA--G----T--------------GTGAG.......................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.................................................................TATGTGTGTGTGCGT--G----T--------------GT..........................................................................................................................................................................................................	19	8	0.13	0.00	0.00	0.13	0.00
..................................................................GTGTGTGTGTGCGT--G----T--------------GT..........................................................................................................................................................................................................	18	11	0.09	0.09	0.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGC--G----T--------------GTG.........................................................................................................................................................................................................	20	10	0.10	0.00	0.00	0.10	0.00
....................................................................GTGTGTGTGCGT--G----T--------------GTGTGT-G....................................................................................................................................................................................................	21	8	0.13	0.00	0.00	0.13	0.00
...GCGCGC-----------------------------------------------------C--TGTGTGTGTGA......................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..............................................................T--TGTGTGTGTGTGTGT--G----T--------------............................................................................................................................................................................................................	18	13	0.08	0.00	0.00	0.08	0.00
...GCGCGC-----------------------------------------------------G--TGTGTGTGTGT......................................................................................................................................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
..................................................................GTGTGTGTGTGCGT--A----T--------------GT..........................................................................................................................................................................................................	18	9	0.11	0.11	0.00	0.00	0.00
...................................................................TGTGTGTGTGCGA--G----T--------------GAGAGT-.....................................................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................GTGTGTATGTGCGG--G----T--------------GT..........................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.....................................................................TGTGTGTGCGT--G----T--------------GTGTG.......................................................................................................................................................................................................	18	13	0.08	0.00	0.00	0.00	0.08

droAna3

TGTGgGTGtGtGtg--------------GTtTG----TGT----------------------G--TGTGTGTGtGTGTGt--G--TGT--------------GGGAGGAGGAAAAGCGGATTTCGTAAAACGCATTTACTAATTTTCTT-AAAAAT-------------------------AACAAAAAC-----AACA-AAACGTGT--------------------------------------------------------------TT-CCATTACAGTTAG--AACCAA----TTGCACAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................................................GTGGGTGx--G--TGT--------------GGGAGGAG....................................................................................................................................................................................................	19	1	289.00	8.00	279.00	2.00	0.00
........................................................................GTGGGTGx--G--TGT--------------GGGAGGAGG...................................................................................................................................................................................................	20	1	191.00	5.00	184.00	2.00	0.00
........................................................................GTGGGTGx--G--TGT--------------GGGAGGAGGA..................................................................................................................................................................................................	21	1	26.00	1.00	25.00	0.00	0.00
.........................................................................TGGGTGx--G--TGT--------------GGGAGGAGG...................................................................................................................................................................................................	19	1	25.00	0.00	25.00	0.00	0.00
.........................................................................TGGGTGx--G--TGT--------------GGGAGGAG....................................................................................................................................................................................................	18	1	20.00	0.00	20.00	0.00	0.00
...................................................................TGTGTGTGTCTGT--G--TGT--------------GTGA........................................................................................................................................................................................................	21	5	2.80	0.00	2.80	0.00	0.00
.....................................TGT----------------------G--TGTGTCTGTGTGTGT--G--A............................................................................................................................................................................................................................	21	5	2.80	0.00	2.80	0.00	0.00
...............................TG----TGT----------------------G--TGTCTGTGTGTGTGA--................................................................................................................................................................................................................................	21	5	2.80	0.00	2.80	0.00	0.00
.................................................................TGTGTGTGTCTGTGT--G--TGT--------------GA..........................................................................................................................................................................................................	21	5	2.80	0.00	2.80	0.00	0.00
.......................................T----------------------G--TGTGTGTCTGTGTGT--G--TGA--------------............................................................................................................................................................................................................	21	5	2.80	0.00	2.80	0.00	0.00
...............................AG----TGT----------------------G--TGTGTGTGTGTG.....................................................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
.....................................TGT----------------------G--TGTGTGTGTGTGTGT--G--TGT--------------G...........................................................................................................................................................................................................	24	4	2.75	0.00	2.75	0.00	0.00
.....................................AGT----------------------G--TGTGTGTGTGTGTG...................................................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
.......................................A----------------------G--TGTGTGTGTGTGTGT--G--.............................................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
...................................................................AGTGTGTGTGTGT--G--TGT--------------G...........................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
.............................TGTG----TGT----------------------G--TGTGTGTGTGTGTGT--G--.............................................................................................................................................................................................................................	24	4	2.75	0.00	2.75	0.00	0.00
.............A--------------GTGTG----TGT----------------------G--TGTGTGTG.........................................................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
.............................AGTG----TGT----------------------G--TGTGTGTGTG.......................................................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
.......................................T----------------------G--TGTGTGTGTGTGTGT--G--TGT--------------GTG.........................................................................................................................................................................................................	24	4	2.75	0.00	2.75	0.00	0.00
.....................................................................AGTGTGTGTGT--G--TGT--------------GTG.........................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
.................................................................AGTGTGTGTGTGTGT--G--TG...........................................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
...............................TG----TGT----------------------G--TGTGTGTGTGTGTGT--G--TG...........................................................................................................................................................................................................................	24	4	2.75	0.00	2.75	0.00	0.00
......................................GT----------------------G--TGTGTGTGTGTGTGT--................................................................................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
............................GTGTG----TGT----------------------G--TGTGTGTGT........................................................................................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
..................................................................GTGTGTGTGTGTGT--G--TGT--------------............................................................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
................................G----TGT----------------------G--TGTGTGTGTGTGT....................................................................................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
....................................................................GTGTGTGTGTGT--G--TGT--------------GT..........................................................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
................................G----TGT----------------------G--TGTGTGTGTGTGAGT--G--TGT--------------A...........................................................................................................................................................................................................	25	1	10.00	0.00	10.00	0.00	0.00
........................................................................GTGGGTGx--G--TGT--------------GGGAGGA.....................................................................................................................................................................................................	18	1	10.00	0.00	10.00	0.00	0.00
..............................GTG----TGT----------------------G--TGTGTGTGTGT......................................................................................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
..............................................................G--TGTGTGTGTGTGTGT--G--T............................................................................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
.........................................................................TGGGTGx--G--TGT--------------GGGAGGAGGA..................................................................................................................................................................................................	20	1	9.00	1.00	8.00	0.00	0.00
....................................................................GTGTGTGTGTGT--x--TGT--------------GGCA........................................................................................................................................................................................................	19	2	4.50	1.00	3.00	0.50	0.00
.................................................................AGTGTGTGTGTGTGT--G--TGT--------------............................................................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
.......................................T----------------------G--TGTGTGTGTGTGTGT--G--TGT--------------G...........................................................................................................................................................................................................	22	6	1.33	0.00	1.33	0.00	0.00
..............................GTG----TGT----------------------G--TGTGTGTGTGTGTGT--G--.............................................................................................................................................................................................................................	23	5	1.60	0.20	1.40	0.00	0.00
......................................GT----------------------G--TGTGTGTGTGTGTGT--G--TGT--------------GTG.........................................................................................................................................................................................................	25	4	2.00	0.00	2.00	0.00	0.00
.............................AGTG----TGT----------------------G--TGTGTGTGTGT......................................................................................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G--TGT--------------GTG.........................................................................................................................................................................................................	22	6	1.33	0.00	1.33	0.00	0.00
................................G----TGT----------------------G--TGTGTGTGTGTGTGT--G--TGT--------------G...........................................................................................................................................................................................................	25	4	2.00	0.00	2.00	0.00	0.00
............................GTGTG----TGT----------------------G--TGTGTGTGTGTGTGT--G--.............................................................................................................................................................................................................................	25	4	2.00	0.00	2.00	0.00	0.00
...............................TG----TGT----------------------G--TGTGTGTGTGTGTGT--G--.............................................................................................................................................................................................................................	22	6	1.33	0.00	1.33	0.00	0.00
..............................................................G--TGTGTGTGTGTGTGT--G--TGT--------------GTG.........................................................................................................................................................................................................	23	5	1.60	0.20	1.40	0.00	0.00
.............A--------------GTGTG----TGT----------------------G--TGTGTGTGT........................................................................................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
...................................................................AGTGTGTGTGTGT--G--TGT--------------GT..........................................................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
..............................GTG----TGT----------------------G--TGTGTGTGTGTGTGT--G--TG...........................................................................................................................................................................................................................	25	4	2.00	0.00	2.00	0.00	0.00
.....................................TGT----------------------G--TGTGTGTGTGTGTGT--G--TG...........................................................................................................................................................................................................................	22	6	1.33	0.00	1.33	0.00	0.00
................................G----TGT----------------------G--TGTGTGTGTGTGTGT--G--TG...........................................................................................................................................................................................................................	23	5	1.60	0.20	1.40	0.00	0.00
.....................................AGT----------------------G--TGTGTGTGTGTGTGT--................................................................................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
.............................TGTG----TGT----------------------G--TGTGTGTGTGTGTG...................................................................................................................................................................................................................................	22	6	1.33	0.00	1.33	0.00	0.00
............................GTGTG----TGT----------------------G--TGTGTGTGTGTGTG...................................................................................................................................................................................................................................	23	5	1.60	0.20	1.40	0.00	0.00
...............................AG----TGT----------------------G--TGTGTGTGTGTGT....................................................................................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
.......................................A----------------------G--TGTGTGTGTGTGTGT--G--T............................................................................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
......................................GT----------------------G--TGTGTGTGTGTGTGT--G--TGT--------------G...........................................................................................................................................................................................................	23	5	1.60	0.20	1.40	0.00	0.00
...............................TG----TGT----------------------G--TGTGTGTGTGTG.....................................................................................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
..............................................................G--TGTGTGTGTGTGTGT--G--TGT--------------GTGC........................................................................................................................................................................................................	24	6	1.17	0.17	1.00	0.00	0.00
..............................................................G--TGTGTGTGAATGTGT--G--T............................................................................................................................................................................................................................	18	4	1.75	0.50	0.75	0.50	0.00
.................................................................TGTGTGTGTGTGTGT--G--TG...........................................................................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
...................................................................TGTGTGTGTGTGT--G--TGT--------------G...........................................................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
................................G----TGT----------------------G--TGTGAATGTGTGT....................................................................................................................................................................................................................................	18	4	1.75	0.50	0.75	0.50	0.00
............................GTGTG----TGT----------------------G--TGTGTGTGTGTGTGC--................................................................................................................................................................................................................................	24	6	1.17	0.17	1.00	0.00	0.00
..................................................................GTGTGTGTGAATGT--G--TGT--------------............................................................................................................................................................................................................	18	4	1.75	0.50	0.75	0.50	0.00
......................................GT----------------------G--TGTGTGAATGTGTGT--................................................................................................................................................................................................................................	18	4	1.75	0.50	0.75	0.50	0.00
..............................GTG----TGT----------------------G--TGTGTGTGTGTGTGT--G--C............................................................................................................................................................................................................................	24	6	1.17	0.17	1.00	0.00	0.00
......................................GT----------------------G--TGTGTGTGTGTGTGT--G--TGT--------------GC..........................................................................................................................................................................................................	24	6	1.17	0.17	1.00	0.00	0.00
.............................TGTG----TGT----------------------G--TGTGTGTGTG.......................................................................................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
.....................................................................TGTGTGTGTGT--G--TGT--------------GTG.........................................................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
.....................................TGT----------------------G--TGTGTGTGTGTGTG...................................................................................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
................................G----TGT----------------------G--TGTGTGTGTGTGTGT--G--TGC--------------............................................................................................................................................................................................................	24	6	1.17	0.17	1.00	0.00	0.00
.......................................T----------------------G--TGTGTGTGTGTGTGT--G--.............................................................................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
.....................................TGT----------------------G--TGTGTGTGTGTGTGT--................................................................................................................................................................................................................................	19	11	0.55	0.00	0.55	0.00	0.00
..................................................................GTGTGTGTGTGTGT--G--TGT--------------GTG.........................................................................................................................................................................................................	21	7	0.86	0.00	0.86	0.00	0.00
..............................................................G--TGTGTGTGTGTGTGT--G--TGT--------------G...........................................................................................................................................................................................................	21	7	0.86	0.00	0.86	0.00	0.00
...............................TG----TGT----------------------G--TGTGTGTGTGTGT....................................................................................................................................................................................................................................	19	11	0.55	0.00	0.55	0.00	0.00
.....................................TGT----------------------G--TGTGTGTGTGAGTGT--G--TGT--------------GC..........................................................................................................................................................................................................	25	2	3.00	0.00	3.00	0.00	0.00
..............................GTG----TGT----------------------G--TGTGTGTGTGTGTG...................................................................................................................................................................................................................................	21	7	0.86	0.00	0.86	0.00	0.00
.............................TGTG----TGT----------------------G--TGTGTGTGTGT......................................................................................................................................................................................................................................	19	11	0.55	0.00	0.55	0.00	0.00
...................................................................TGTGTGTGTGTGT--G--TGT--------------GT..........................................................................................................................................................................................................	19	11	0.55	0.00	0.55	0.00	0.00
.......................................T----------------------G--TGTGTGTGTGTGTGT--G--T............................................................................................................................................................................................................................	19	11	0.55	0.00	0.55	0.00	0.00
................................G----TGT----------------------G--TGTGTGTGTGTGTGT--G--.............................................................................................................................................................................................................................	21	7	0.86	0.00	0.86	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G--TGT--------------............................................................................................................................................................................................................	19	11	0.55	0.00	0.55	0.00	0.00
............................GTGTG----TGT----------------------G--TGTGTGTGTGTG.....................................................................................................................................................................................................................................	21	7	0.86	0.00	0.86	0.00	0.00
...............................TG----TGT----------------------G--TGTGTGTGAGTGTGT--G--TGC--------------............................................................................................................................................................................................................	25	2	3.00	0.00	3.00	0.00	0.00
......................................GT----------------------G--TGTGTGTGTGTGTGT--G--TG...........................................................................................................................................................................................................................	21	7	0.86	0.00	0.86	0.00	0.00
................................G----TGT----------------------G--TGTGTGTGTGTTG....................................................................................................................................................................................................................................	18	7	0.71	0.00	0.71	0.00	0.00
.......................................T----------------------G--TGTGTGTGTGTGTGT--G--TG...........................................................................................................................................................................................................................	20	9	0.56	0.00	0.56	0.00	0.00
......................................GT----------------------G--TGTGTGTGTGTGTGT--G--TGT--------------GCG.........................................................................................................................................................................................................	25	5	1.00	0.00	1.00	0.00	0.00
...............................TG----TGT----------------------G--TGTGTGTGTGTGTG...................................................................................................................................................................................................................................	20	9	0.56	0.00	0.56	0.00	0.00
..............................................................G--TGTGTGTGTGTGTGT--G--TGT--------------GTGCG.......................................................................................................................................................................................................	25	5	1.00	0.00	1.00	0.00	0.00
......................................GT----------------------G--TGTGTGTGTGTGTTG--................................................................................................................................................................................................................................	18	7	0.71	0.00	0.71	0.00	0.00
....................................................................GTGTGTGTGTGT--G--TGT--------------TG..........................................................................................................................................................................................................	18	7	0.71	0.00	0.71	0.00	0.00
..............................GTG----TGT----------------------G--TGTGTGTGTGTGTGT--G--CG...........................................................................................................................................................................................................................	25	5	1.00	0.00	1.00	0.00	0.00
.............................TGTG----TGT----------------------G--TGTGTGTGTGTG.....................................................................................................................................................................................................................................	20	9	0.56	0.00	0.56	0.00	0.00
..............................................................G--TGTGTGTGTGTGTGT--T--G............................................................................................................................................................................................................................	18	7	0.71	0.00	0.71	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G--TGT--------------G...........................................................................................................................................................................................................	20	9	0.56	0.00	0.56	0.00	0.00
................................G----TGT----------------------G--TGTGTGTGTGTGTGT--G--TGC--------------G...........................................................................................................................................................................................................	25	5	1.00	0.00	1.00	0.00	0.00
...................................................................TGTGTGTGTGTGT--G--TGT--------------GTG.........................................................................................................................................................................................................	20	9	0.56	0.00	0.56	0.00	0.00
.....................................TGT----------------------G--TGTGTGTGTGTGTGT--G--.............................................................................................................................................................................................................................	20	9	0.56	0.00	0.56	0.00	0.00
..................................................................GTGTGTGTGTGTGT--G--TTG--------------............................................................................................................................................................................................................	18	7	0.71	0.00	0.71	0.00	0.00
............................GTGTG----TGT----------------------G--TGTGTGTGTGTGTGC--G--.............................................................................................................................................................................................................................	25	5	1.00	0.00	1.00	0.00	0.00
.................................................................TGTGTGTGTGTGTGT--G--TGC--------------A...........................................................................................................................................................................................................	20	7	0.57	0.00	0.57	0.00	0.00

dp4

CGCGTGCGT-----------------------------------------------------ATGTGTGTGTGTATGTGC--A----T--------------GCGAGG-GGGGATATGGATTCTGTAAAACGttTTTtTTtTtTTtTt-T---gTt-------------------------------TTt----------tTT-----------tggttTTTtTTtttTttTGTGTTTGTG----------------TTTTCTTTTGTATCCAAAATTGCAGT-AG--AATCAA----TTGCACtt	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......GT-----------------------------------------------------ACGTGTGTGTGTGTGTGC--................................................................................................................................................................................................................................	20	2	4.00	0.00	4.00	0.00	0.00
.......GT-----------------------------------------------------ACGTGTGTGTGTGTGT....................................................................................................................................................................................................................................	18	29	0.17	0.00	0.17	0.00	0.00
.......GT-----------------------------------------------------ACGTGTGTGTGTGTGTG...................................................................................................................................................................................................................................	19	26	0.19	0.08	0.08	0.04	0.00
...GTACGT-----------------------------------------------------GTGTGTGTGTGT........................................................................................................................................................................................................................................	18	29	0.17	0.00	0.17	0.00	0.00
........................................................................................................................................................................................................TTT-----------TTTTTTTTTTTTTTTTT...........................................................................	20	29	0.10	0.10	0.00	0.00	0.00
..........................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTT....................................................................	20	29	0.10	0.10	0.00	0.00	0.00
.........................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTT.....................................................................	20	29	0.10	0.10	0.00	0.00	0.00
.........................................................................................................................................................................................................TT-----------TTTTTTTTTTTTTTTTTT..........................................................................	20	29	0.10	0.10	0.00	0.00	0.00
...........................................................................................................................................TTTTTTTTT-T---TTT-------------------------------TTT----------TTT-----------T...........................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
..........................................................................................................................................TTTTTTTTTT-T---TTT-------------------------------TTT----------TTT-----------............................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
.....................................................................................................................................TTTTTTTTTTTTTTT-T---TTT-------------------------------T......................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
...........................................................................................................................................................................................TTT----------TTT-----------TTTTTTTTTTTTTT..............................................................................	20	29	0.10	0.10	0.00	0.00	0.00
...........................................................................................................................................................T-------------------------------TTT----------TTT-----------TTTTTTTTTTTTT...............................................................................	20	29	0.10	0.10	0.00	0.00	0.00
............................................................................................................................................................................................TT----------TTT-----------TTTTTTTTTTTTTTT.............................................................................	20	29	0.10	0.10	0.00	0.00	0.00
.............................................................................................................................................................................................T----------TTT-----------TTTTTTTTTTTTTTTT............................................................................	20	29	0.10	0.10	0.00	0.00	0.00
.........................................................................................................................................TTTTTTTTTTT-T---TTT-------------------------------TTT----------TT........................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
......................................................................................................................................TTTTTTTTTTTTTT-T---TTT-------------------------------TT.....................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
.......................................................................................................................................TTTTTTTTTTTTT-T---TTT-------------------------------TTT----------..........................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
........................................................................................................................................TTTTTTTTTTTT-T---TTT-------------------------------TTT----------T.........................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
........T-----------------------------------------------------TTGTGTGTGTGTGTGTG...................................................................................................................................................................................................................................	18	37	0.08	0.03	0.03	0.03	0.00
....................................................................................................................................TTTTTTTTTTTTTTTT-T---TTT-------------------------------.......................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
..........................................................................................................................................................TT-------------------------------TTT----------TTT-----------TTTTTTTTTTTT................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
...................................................................................................................................TTTTTTTTTTTTTTTTT-T---TT.......................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
............................................................................................................................................TTTTTTTT-T---TTT-------------------------------TTT----------TTT-----------TT..........................................................................................	20	29	0.10	0.10	0.00	0.00	0.00

droPer1

CGCGTGCGT---------------------------------------------------------GTATGTGTATGCGA--------------------------GG-GGGGATATGGATTCTGTAAAACGAATTTATTATATCTAT-T---AAT-------------------------------TCC----------CAA----------------TTTATTAAATATTGTGTTTGTG----------------TTTTCTTTTGTATCCAAAATTGCAGT-AG--AATCAA----TTGCACAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...................................................................................................................AAGGATTCTGAAAAACGA.............................................................................................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
......................................................................................................................................................................................................................................TTGTGTTTGTG----------------TTTGTTTTTG.......................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.GTGTGCGT---------------------------------------------------------GTATGTGTGT......................................................................................................................................................................................................................................	18	27	0.04	0.00	0.00	0.00	0.04	0.00
.....................................................................................................................................................................................................................................................................................TGCTGT-GG--AATCAA----TTGC....	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...GTGCGT---------------------------------------------------------GTATGTGTGTGTG...................................................................................................................................................................................................................................	19	26	0.04	0.04	0.00	0.00	0.00	0.00
...............................................................................A--------------------------CG-GGGGATATGGGTTCT......................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...GTGCGT---------------------------------------------------------GTTTGTGTATGAG...................................................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
...GTGCGT---------------------------------------------------------GTGTGTGTGTGCG...................................................................................................................................................................................................................................	19	31	0.03	0.03	0.00	0.00	0.00	0.00
..............................................................................................................................................................................................................................ATTAAATxTTCTGTTTGTG----------------.................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................................................................................................................................................................................................................................GTATCCAAAAxTGCAGC-AG--AATCA.............	23	1	1.00	0.00	1.00	0.00	0.00	0.00

droWil1

AGTGTGCGACTGAGAGCGAGTGAGAAAGAGTGAG-----AAC--------------------ATGTGTGAGTGTGTGTGA--G----T--------------GTTTGT-GTGAAAGAGTATTTCGTAAAACGCtTTTtTTttTttttt-T---tttTgtttTtttttCAAAACACATGCAATGGAAAAACAACTAAACAAAATCATCTTTAACTtTTTtttttttttttttTttTtTTTTGATTGAATTTTGGTTTCTTTTATTTTGTACTTTTATTTGCAGT-AG--AACAAAAATTTTGCACAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTT.......................................................................	21	68	0.22	0.00	0.22	0.00	0.00
.............................................................................................................................................................................................................................................................TTTTTTTTATGTTGTACT...................................	18	1	11.00	0.00	1.00	0.00	10.00
................................................................GTGTGCGTGTGTGTGT--G----T--------------............................................................................................................................................................................................................	18	43	0.21	0.00	0.19	0.02	0.00
..........................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT..................................................................	22	58	0.14	0.00	0.14	0.00	0.00
........................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTT........................................................................	18	106	0.08	0.00	0.08	0.00	0.00
.......................................................................TGTGTGTGA--G----T--------------GTTTGT-GTGTG................................................................................................................................................................................................	22	8	1.00	0.00	0.75	0.25	0.00
...........GAGAGAGAGAGAGAAAGA.....................................................................................................................................................................................................................................................................................	18	6	1.17	0.50	0.67	0.00	0.00
.....................................................................................................................................TTTTTTTTTTTTTTT-T---TTTT.....................................................................................................................................................	20	79	0.08	0.00	0.08	0.00	0.00
.....................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTT.......................................................................	22	16	0.31	0.00	0.31	0.00	0.00
....................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTT........................................................................	22	16	0.31	0.00	0.31	0.00	0.00
......................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTT......................................................................	22	16	0.31	0.00	0.31	0.00	0.00
.......................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTT.....................................................................	22	16	0.31	0.00	0.31	0.00	0.00
..........................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTT..................................................................	22	16	0.31	0.00	0.31	0.00	0.00
........................................AT--------------------ATGTGTGTGTGTGTGTG...................................................................................................................................................................................................................................	19	22	0.23	0.14	0.00	0.09	0.00
.........................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTT...................................................................	22	16	0.31	0.00	0.31	0.00	0.00
........................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTT....................................................................	22	16	0.31	0.00	0.31	0.00	0.00
.........................................T--------------------ATGTGTGTGTGTGTGTG...................................................................................................................................................................................................................................	18	49	0.10	0.00	0.02	0.08	0.00
...................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTT.........................................................................	22	16	0.31	0.00	0.31	0.00	0.00
............................................................................................................................................TTTTTTTT-T---TTTTTTTTTTTTTT...........................................................................................................................................	23	51	0.06	0.00	0.06	0.00	0.00
.................................................................................................................................................................................................................................................................................................................A	19	40	0.08	0.00	0.08	0.00	0.00
.................................................................................................................................................................................................................................................................................................................A	18	34	0.09	0.03	0.06	0.00	0.00
..........................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTT.................................................................	23	51	0.06	0.00	0.06	0.00	0.00
.....................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTT......................................................................	23	51	0.06	0.00	0.06	0.00	0.00
.....................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTT..........................................................................	19	89	0.03	0.00	0.00	0.00	0.03
.......................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTT..................................................................	25	10	0.30	0.00	0.30	0.00	0.00
..........................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTT...................................................................	21	19	0.16	0.00	0.16	0.00	0.00
......................................................................................................................................TTTTTTTTTTTTTT-T---TTTTTTTT.................................................................................................................................................	23	51	0.06	0.00	0.06	0.00	0.00
......................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTT.......................................................................	21	19	0.16	0.00	0.16	0.00	0.00
.......................................................................................................................................TTTTTTTTTTTTT-T---TTTTTTTTT................................................................................................................................................	23	51	0.06	0.00	0.06	0.00	0.00
...........................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTT..................................................................	21	19	0.16	0.00	0.16	0.00	0.00
...................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTT......................................................................	25	10	0.30	0.00	0.30	0.00	0.00
.........................................................................................................................................TTTTTTTTTTT-T---TTTTTTTTTTT..............................................................................................................................................	23	51	0.06	0.00	0.06	0.00	0.00
..........................................................................GTGTGT--G----T--------------GTCTGT-GTGA.................................................................................................................................................................................................	18	19	0.16	0.00	0.16	0.00	0.00
.....................................................................................................................................TTTTTTTTTTTTTTT-T---TTTTTTT..................................................................................................................................................	23	51	0.06	0.00	0.06	0.00	0.00
.......................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTT....................................................................	23	51	0.06	0.00	0.06	0.00	0.00
.......................................................................TGTGTGTGT--G----T--------------GTGTGT-GTGA.................................................................................................................................................................................................	21	32	0.09	0.00	0.03	0.06	0.00
.........................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTT..................................................................	23	51	0.06	0.00	0.06	0.00	0.00
....................................................................................................................................ATTTTTTTTTTTTTTT-T---TTTT.....................................................................................................................................................	21	19	0.16	0.00	0.16	0.00	0.00
......................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTT.....................................................................	23	51	0.06	0.00	0.06	0.00	0.00
........................................................................GTGTGTGA--G----T--------------GTGTTT-GT...................................................................................................................................................................................................	18	20	0.15	0.05	0.10	0.00	0.00
..........................................................................................................................................TTTTTTTTTT-T---TTTTTTTTTTTT.............................................................................................................................................	23	51	0.06	0.00	0.06	0.00	0.00
........................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTT.....................................................................	21	19	0.16	0.00	0.16	0.00	0.00
.........................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTT....................................................................	21	19	0.16	0.00	0.16	0.00	0.00
.....................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTT........................................................................	21	19	0.16	0.00	0.16	0.00	0.00
....................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTT.....................................................................	25	10	0.30	0.00	0.30	0.00	0.00
....................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTT.........................................................................	21	19	0.16	0.00	0.16	0.00	0.00
........................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTT...................................................................	23	51	0.06	0.00	0.06	0.00	0.00
...................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTT..........................................................................	21	19	0.16	0.00	0.16	0.00	0.00
..............................................................ATGTGTGCGTGTGTGGGA--G----T--------------............................................................................................................................................................................................................	20	1	3.00	0.00	1.00	2.00	0.00
......................................................................GTGTGTGAGT--G----T--------------GTTTGT-.....................................................................................................................................................................................................	18	20	0.15	0.05	0.10	0.00	0.00
....................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTT.......................................................................	23	51	0.06	0.00	0.06	0.00	0.00
........................................................................................................................................TTTTTTTTTTTT-T---TTTTTTTTTT...............................................................................................................................................	23	51	0.06	0.00	0.06	0.00	0.00
......................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTT...................................................................	25	10	0.30	0.00	0.30	0.00	0.00
.....................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTT....................................................................	25	10	0.30	0.00	0.30	0.00	0.00
.......................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTT......................................................................	21	19	0.16	0.00	0.16	0.00	0.00
...........................................................................................................................................TTTTTTTTT-T---TTTTTTTTTTTTT............................................................................................................................................	23	51	0.06	0.00	0.06	0.00	0.00
.........................................................................TGTGTGT--G----T--------------GTGTGT-GTGA.................................................................................................................................................................................................	19	40	0.08	0.00	0.03	0.05	0.00

droVir3

CGCGCGCGTATTTGCCATTGTGTGgGTGgGTtgG---TGgGTt------------------TG--TGTG--TGTGTGTGCCAGAGCGAAGGCAGCAGGCAGGAAGAGC-GAGCAAATGATTTTTGTAAAACGCATTTACTAATT------ACA----------------------------------AAT----------------------------------------------------------------------------------------------AC-----A-------AATACAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................GTGGGTGGGTGGG---TGGTT........................................................................................................................................................................................................................................................................	18	2	115.50	104.00	11.50	0.00	0.00	0.00
.....................GTGGGTGGTTGGG---TGGGT........................................................................................................................................................................................................................................................................	18	1	9.00	4.00	5.00	0.00	0.00	0.00
.....................GTGGGTGGTTGGG---TGGGTT------------------T....................................................................................................................................................................................................................................................	20	1	6.00	2.00	4.00	0.00	0.00	0.00
.....................................TGTGTG------------------TG--TGTG--TGTGTGTGC..................................................................................................................................................................................................................................	21	20	0.20	0.10	0.00	0.10	0.00	0.00
......................TGGGTGGGTGGG---TGGAT........................................................................................................................................................................................................................................................................	17	1	3.00	0.00	3.00	0.00	0.00	0.00
.................................G---TGTGTG------------------TG--TGTG--TGTGTGTGC..................................................................................................................................................................................................................................	22	18	0.17	0.06	0.06	0.06	0.00	0.00

droMoj3

CGCGCGCGTATTTGCGTTTGTGTGgGTGgGTGgG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................TGGGTGGGTGGGTGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	17	4	1.50	0.00	1.50	0.00	0.00
.................GTGTGTGGGTGGGTGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	18	3	0.33	0.33	0.00	0.00	0.00
..................TGGGTGGGTGGGTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	17	4	0.25	0.00	0.25	0.00	0.00
...............GTGTGTGTGGGTGGGTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	19	2	0.50	0.50	0.00	0.00	0.00
..................TGGGTGGGTGGGAGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	17	4	0.25	0.00	0.25	0.00	0.00
.................GTGTGTGGGTGGGTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	18	5	0.20	0.20	0.00	0.00	0.00
...............GTGTGTGTGCGTGGGT...................................................................................................................................................................................................................................................................................	16	6	0.17	0.00	0.17	0.00	0.00
...................GTGTGTGTGCGTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	16	6	0.17	0.00	0.17	0.00	0.00

droGri2

CGCGCGCGTATTTGCCATTGTtTGTGTGgGggTGTTGTgTgTTgtTtTtTtTtTtTtTtTGTG--TGTG------------------T--------------GTGTGT-GTCAGAGTGGAATTTGTAAAACGCATTTACTTATT------AAC----------------------------------GAA-----AACA-AAATGTGAACAAATA-TT-------------TAT---AGAT----------------ATG---TGTAAATTT-AAAA--TACT-CG--CACAAA----TTGCATAA	Size	Hit Count	Total Norm	V109 Male body
.........................................................TGTGTG--TGTG------------------T--------------TTGTGT-GT...................................................................................................................................................................................................	19	41	0.07	0.07
.........................................................AGTGTG--TGTG------------------T--------------GTGTGT-GT...................................................................................................................................................................................................	19	50	0.04	0.04
.........................................................TGTGTG--TGTG------------------T--------------GTGTGT-GT...................................................................................................................................................................................................	19	37	0.05	0.05
...........................................................TGTG--TGTG------------------T--------------GTGTGT-GTTG.................................................................................................................................................................................................	19	37	0.05	0.05
...........................................................TGTG--TGTG------------------T--------------GTGTGT-GTGAGA...............................................................................................................................................................................................	21	23	0.04	0.04
.......................................................TTTGTGTG--TGTG------------------T--------------xTGTGT-GGCA.................................................................................................................................................................................................	22	1	1.00	1.00
............................................................GTG--TGAG------------------T--------------GTGTGT-GTGAGA...............................................................................................................................................................................................	20	3	0.33	0.33
.......................................................TATGTGTG--TGTG------------------T--------------GTGTGT-.....................................................................................................................................................................................................	19	47	0.02	0.02
.......................................................TTTGTGTG--TGTG------------------T--------------GTGTGT-T....................................................................................................................................................................................................	20	31	0.03	0.03
..........................................................TTGTG--CGTG------------------T--------------GTGAGT-GT...................................................................................................................................................................................................	18	4	0.25	0.25
.......................................................TGTATGTG--TGTG------------------T--------------GTGTGT-GT...................................................................................................................................................................................................	21	35	0.03	0.03
.........................................................TGTGTG--TGTG------------------T--------------GTGTGT-G....................................................................................................................................................................................................	18	50	0.02	0.02
...........................................................TGTG--TGTG------------------T--------------GTGTGT-GTGAGT...............................................................................................................................................................................................	21	39	0.03	0.03
........................................................TGTTGTG--TGCG------------------T--------------GTGTGT-G....................................................................................................................................................................................................	19	2	0.50	0.50
......................................................TTTTGTGTG--CGTG------------------T--------------GTGTG.......................................................................................................................................................................................................	19	4	0.25	0.25
..........................................................GTGTG--TGTG------------------T--------------GTGTGT-GTGA.................................................................................................................................................................................................	20	45	0.02	0.02
............................................................GTG--TGTG------------------T--------------GTGTGT-GTCCG................................................................................................................................................................................................	19	21	0.05	0.05
.........................................................TGTGTG--TGTG------------------T--------------GTGTGT-CT...................................................................................................................................................................................................	19	42	0.02	0.02
..........................................................GTGTG--TGTG------------------T--------------GTGTGT-GT...................................................................................................................................................................................................	18	46	0.02	0.02
.............................................................TG--TGTG------------------T--------------GTGTGT-GTGAGTGTG............................................................................................................................................................................................	22	34	0.03	0.03
.............................................................CG--TGTG------------------T--------------GTGTGT-GTGAG................................................................................................................................................................................................	18	30	0.03	0.03
........................................................TTTTGTG--TGTG------------------T--------------ATGTGG-G....................................................................................................................................................................................................	19	2	0.50	0.50
.......................................................TATGTGTG--TGTG------------------T--------------GTGTGT-G....................................................................................................................................................................................................	20	44	0.02	0.02
........................................................TTTTGTG--TGCG------------------T--------------GTGTGT-G....................................................................................................................................................................................................	19	4	0.25	0.25
...........................................................TGTG--TGTG------------------T--------------GTGTGT-GTG..................................................................................................................................................................................................	18	50	0.02	0.02
.....................TTGTGTGTGTGTGTTGTGTG.........................................................................................................................................................................................................................................................................	20	3	0.33	0.33
...........................................................TGTG--TGTG------------------T--------------GTGTGA-GTGAGA...............................................................................................................................................................................................	21	2	0.50	0.50
..................................................................GTG------------------T--------------GTGTGT-GTGAGGGT.............................................................................................................................................................................................	18	34	0.03	0.03
.........................................................TAAGTG--TGTG------------------T--------------GTGTGT-GT...................................................................................................................................................................................................	19	27	0.04	0.04
........................................................GTATGTG--TGTG------------------T--------------GTGTGT-G....................................................................................................................................................................................................	19	49	0.02	0.02
.........................................................TGTGTG--TGAG------------------T--------------GTGTGT-GT...................................................................................................................................................................................................	19	40	0.03	0.03
.........................................................TATGTG--TGTG------------------T--------------GTGTGT-GT...................................................................................................................................................................................................	19	47	0.02	0.02
.........................................................TATGTG--TGTG------------------T--------------GTGTGT-GTG..................................................................................................................................................................................................	20	44	0.02	0.02
............................................................GTG--TGTG------------------T--------------GTGTGT-GTGTGA...............................................................................................................................................................................................	20	45	0.02	0.02
.........................................................TTTGTG--TGTG------------------T--------------GTGTGT-GTT..................................................................................................................................................................................................	20	31	0.03	0.03
..............................................TTTTATTTTTTTTTGAG--T................................................................................................................................................................................................................................................	18	3	0.33	0.33
.........................................................GTTGTG--TGTG------------------T--------------GTGCGT-G....................................................................................................................................................................................................	18	8	0.13	0.13
.............................................................TG--TGTG------------------T--------------GTGTGT-GTGTGAGT.............................................................................................................................................................................................	21	39	0.03	0.03
......................................................TTTGTTGTG--TGTG------------------T--------------GTGTTT-G....................................................................................................................................................................................................	21	1	1.00	1.00
.............................................TTTGTTTTTTTTTTTGTG--TTT..............................................................................................................................................................................................................................................	21	3	0.33	0.33
...........................................................TGTG--TGTG------------------T--------------GTGTGT-GTCT.................................................................................................................................................................................................	19	42	0.02	0.02

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image											None
UNAFold Image											None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image