Possible Orthologs for sblock177188

droSim1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrX_random:1727169-1727312 -

95.2

GGCGCGCACTGGTGTGTG--TGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GGCGCGCACTGGTGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGACTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...........ATGTGTCTGTGTGTGAGT...................................................................................................................	18	3	0.67	0.00	0.00	0.67	0.00
............TGTTTGTGTGTGTGGGTG..................................................................................................................	18	5	0.40	0.00	0.40	0.00	0.00
..................TGTTTGTGTGTGTGGGTG............................................................................................................	18	5	0.40	0.00	0.40	0.00	0.00
............GCTGTGTGTGTGTGAGTG..................................................................................................................	18	4	0.50	0.00	0.00	0.00	0.50
.....................GAGTxxGTTTGGGTGGAAAA.......................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..............TGTGTGTGTGCGAGAGTG................................................................................................................	18	7	0.14	0.00	0.14	0.00	0.00
..............TGTGTGTGTGTGTGTGTGCGT.............................................................................................................	21	3	0.33	0.33	0.00	0.00	0.00
.........TGGTxTGTGTGTGTGTTAGT...................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
..................TGTGTGTGTGTGTGGTTG............................................................................................................	18	5	0.20	0.00	0.00	0.20	0.00
..............TGTGTGTGTGTGTGTGTG................................................................................................................	18	40	0.03	0.03	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTG..................................................................................................................	18	40	0.03	0.03	0.00	0.00	0.00
..................TGTGTGTGTGTGTGTGTG............................................................................................................	18	40	0.03	0.03	0.00	0.00	0.00
........................................................................................................TTTCTACATCTCACTTACAGTT..................	22	1	1.00	1.00	0.00	0.00	0.00
............TGTCTGTGTGTGTGTGTGT.................................................................................................................	19	14	0.07	0.07	0.00	0.00	0.00
..................TGTGTGTGTGTGTGTGTGG...........................................................................................................	19	19	0.05	0.05	0.00	0.00	0.00
............TGTGTGTGTGTGTGGTTG..................................................................................................................	18	5	0.20	0.00	0.00	0.20	0.00
................TGTGTGTGTGAGTGTATGT.............................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
............TGTGTGTGTGTGTGAGTG..................................................................................................................	18	5	0.20	0.00	0.20	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGCG..............................................................................................................	22	2	0.50	0.50	0.00	0.00	0.00
..............TGTGTGTGTGTTAGTGTT................................................................................................................	18	5	0.20	0.20	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTGG.................................................................................................................	19	19	0.05	0.05	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGGTT.............................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTGT.................................................................................................................	19	34	0.03	0.03	0.00	0.00	0.00
.......................................................................................................TTTTCTACATCTCACTTACAGT...................	22	1	1.00	1.00	0.00	0.00	0.00
............TGTGTGTGCGTGTGAGCG..................................................................................................................	18	8	0.13	0.13	0.00	0.00	0.00
.......................................................................................................TTTTCTACATCTCACTTACAG....................	21	1	1.00	0.00	1.00	0.00	0.00
..............TGTGTGTGTGTGTGTGTGG...............................................................................................................	19	19	0.05	0.05	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTGTGT...............................................................................................................	19	34	0.03	0.03	0.00	0.00	0.00
......CGCTGGTGTGTGTGTGGG........................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
............TGTGTGTGTGCGAGAGTG..................................................................................................................	18	7	0.14	0.00	0.14	0.00	0.00
................TGTGTGTGTGTGTGTGGT..............................................................................................................	18	10	0.10	0.10	0.00	0.00	0.00
..........TGTGTGTGTGTGTGTGGGTGT.................................................................................................................	21	4	0.25	0.25	0.00	0.00	0.00
..........TGTGTGTGTGTGTGTGTGT...................................................................................................................	19	34	0.03	0.03	0.00	0.00	0.00
.................GTGTGTGGGCGTGTGGGT.............................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
............TATGTGTGTGTGTGAGTGC.................................................................................................................	19	10	0.10	0.00	0.00	0.10	0.00
............AGTGTGTGTGAGTGAGTG..................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
..........TGTGTGTGTGTGTGTGTG....................................................................................................................	18	40	0.03	0.03	0.00	0.00	0.00
.............GTGCGTGTGTGTGAGTGG.................................................................................................................	18	3	0.33	0.33	0.00	0.00	0.00
.........TGTTGTGTGTGTGTGTGTGT...................................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00
....................TGTGGGTGxGTGGGTGGAA.........................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGGGTGT...........................................................................................................	21	4	0.25	0.25	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTGT.............................................................................................................	19	34	0.03	0.03	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTG..............................................................................................................	18	40	0.03	0.03	0.00	0.00	0.00

chrX_random:1726871-1726984 -

34.11

GGCGCGCACTG-----GTGTGTGTGTGTGAGTGTGGGTGGA-------------AAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAAT-TGCACAA GCAGCGCAGCCAGCAGCGACGTCGACGCCAGCGTCGCCGCATGGAAAGCACAGAAAACCGCATGAC-----------------------------AAGGAAATGGAA---------AATTTTTGTGCAGCCC---------GAAAAACCAAATGTGAACAT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..AGCGCAGCCAGCAGCGACGTCGACGAC....................................................................................................................................	27	1	1.00	0.00	0.00	0.00	1.00
.........GCGGCAGCGACGTCGACGC.....................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00

chrX:16292599-16292644 -

20.96

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G-CGCACGTTGGCTTGTGTGTGTGCGTGCCAGAGAGAATTTGGGTT------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................TGCAAGAGAxAATTTGGGTT------------------------------------------------------------------------------------------------	19	1	1.00	1.00	0.00	0.00	0.00

chrX_random:1727280-1727318 -

17.86

------GGCGCGCACTGGTGTGTG--TGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TTCCAAGGCGCGCACTGGTGTGTGTGTGTGTGAGTGTGG---------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................GCTGTGTGTGTGTGAGTG..................................................................................................................	18	4	0.50	0.00	0.00	0.00	0.50
..................TGTTTGTGTGTGTGGGTG..................................................................................................................	18	5	0.40	0.00	0.40	0.00	0.00
.................ATGTGTCTGTGTGTGAGT...................................................................................................................	18	3	0.67	0.00	0.00	0.67	0.00
...................GTGCGTGTGTGTGAGTGG.................................................................................................................	18	3	0.33	0.33	0.00	0.00	0.00
......................TGTGTGTGTGTGTGTGG---------------------------------------------------------------------------------------------------------------	18	10	0.10	0.10	0.00	0.00	0.00
....................TGTGTGTGTGTGTGTGTGG---------------------------------------------------------------------------------------------------------------	19	19	0.05	0.05	0.00	0.00	0.00
............CGCTGGTGTGTGTGTGGG........................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
....................TGTGTGTGTGTTAGTGTT................................................................................................................	18	5	0.20	0.20	0.00	0.00	0.00
..................TGTGTGTGTGTGTGGTTG..................................................................................................................	18	5	0.20	0.00	0.00	0.20	0.00
..................AGTGTGTGTGAGTGAGTG..................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
..................TGTGTGTGTGTGTGTGTG..................................................................................................................	18	40	0.03	0.03	0.00	0.00	0.00
..................TGTGTGTGTGTGTGTGTGT.................................................................................................................	19	34	0.03	0.03	0.00	0.00	0.00
..................TGTGTGTGTGTGTGTGTGG.................................................................................................................	19	19	0.05	0.05	0.00	0.00	0.00
..................TGTCTGTGTGTGTGTGTGT.................................................................................................................	19	14	0.07	0.07	0.00	0.00	0.00
....................TGTGTGTGTGCGAGAGTG................................................................................................................	18	7	0.14	0.00	0.14	0.00	0.00
..................TATGTGTGTGTGTGAGTGC.................................................................................................................	19	10	0.10	0.00	0.00	0.10	0.00
..................TGTGTGTGTGTGTGAGTG..................................................................................................................	18	5	0.20	0.00	0.20	0.00	0.00
....................TGTGTGTGTGTGTGTGTGT---------------------------------------------------------------------------------------------------------------	19	34	0.03	0.03	0.00	0.00	0.00
..................TGTGTGTGTGCGAGAGTG..................................................................................................................	18	7	0.14	0.00	0.14	0.00	0.00
....................TGTGTGTGTGTGTGTGTG................................................................................................................	18	40	0.03	0.03	0.00	0.00	0.00
...............TGTTGTGTGTGTGTGTGTGT...................................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00
..................TGTGTGTGCGTGTGAGCG..................................................................................................................	18	8	0.13	0.13	0.00	0.00	0.00
...............TGGTxTGTGTGTGTGTTAGT...................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTGT...................................................................................................................	19	34	0.03	0.03	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGGGTGT.................................................................................................................	21	4	0.25	0.25	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTG....................................................................................................................	18	40	0.03	0.03	0.00	0.00	0.00

chr3L:10929688-10929720 -

14.29

GGCGCG--CACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GCCGCGACTGCTGGCGTGTTATTGTTGCTGTTG---------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chrX:16283924-16283936 -

5.22

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
TAACCAAAGGGGA---------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

droSec1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_4:1770865-1771007 +

93.82

GGCGCGCACTGGTGTGT--GTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GGCGCGCACTGGTGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAA-AACGTGTATAATTTACCTGACTTTTTTACATCTCACTTACAGTTAATAATCAAATTGCACAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..............TGTGTGTGTGTGTGTGTG................................................................................................................	18	27	0.30	0.00	0.00	0.30
..................TGTGTGTGTGTGTGTGTG............................................................................................................	18	27	0.30	0.00	0.00	0.30
..........TGTGTGTGTGTGTGTGTG....................................................................................................................	18	27	0.30	0.00	0.00	0.30
............TGTGTGTGTGTGTGTGTG..................................................................................................................	18	27	0.30	0.00	0.00	0.30
................TGTGTGTGTGTGTGTGTG..............................................................................................................	18	27	0.30	0.00	0.00	0.30
.................GTGTGTGTGTGTGTGTGT.............................................................................................................	18	26	0.27	0.12	0.00	0.15
.............GTGTGTGTGTGTGTGTGT.................................................................................................................	18	26	0.27	0.12	0.00	0.15
...............GTGTGTGTGTGTGTGTGT...............................................................................................................	18	26	0.27	0.12	0.00	0.15
...........GTGTGTGTGTGTGTGTGT...................................................................................................................	18	26	0.27	0.12	0.00	0.15
.............GTGTGTGTGTGTGTGTGTGTGTG............................................................................................................	23	9	0.67	0.22	0.00	0.44
..........TGTGTGTGTGTGTGTGTGTGTG................................................................................................................	22	10	0.60	0.30	0.10	0.20
............TGTGTGTGTGTGTGTGTGTGTG..............................................................................................................	22	10	0.60	0.30	0.10	0.20
............TGTGTGTGTGTGTGTGTGTG................................................................................................................	20	17	0.35	0.06	0.00	0.29
................TGTGTGTGTGTGTGTGTGTG............................................................................................................	20	17	0.35	0.06	0.00	0.29
...........GTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................	23	9	0.67	0.22	0.00	0.44
............TGTGTGTGTGTGTGTGTGTGTGTG............................................................................................................	24	4	1.50	0.75	0.00	0.75
..............TGTGTGTGTGTGTGTGTGTGTG............................................................................................................	22	10	0.60	0.30	0.10	0.20
..........AGTGTGTGTGTGTGTGAGTGTGTG..............................................................................................................	24	2	3.00	0.00	0.00	3.00
..............TGTGTGTGTGTGTGTGTGTG..............................................................................................................	20	17	0.35	0.06	0.00	0.29
..........TGTGTGTGTGTGTGTGTGTG..................................................................................................................	20	17	0.35	0.06	0.00	0.29
..........AGTGTGTGTGTGTGTGTGTGT.................................................................................................................	21	4	1.25	0.25	0.25	0.75
.............GTGTGTGTGTGCGTGTGT.................................................................................................................	18	10	0.40	0.00	0.40	0.00
............TGTGTGTGTGTGTGTGTGTGT...............................................................................................................	21	11	0.36	0.09	0.00	0.27
...............GTGTGTGTGTGCGTGTGT...............................................................................................................	18	10	0.40	0.00	0.40	0.00
....................TGTGGGTGxGTGGGTGGAA.........................................................................................................	18	1	4.00	0.00	1.00	3.00
............TGTGTGTGTGTGTGTGTGT.................................................................................................................	19	19	0.21	0.11	0.00	0.11
...........GTGTGTGTGTGCGTGTGT...................................................................................................................	18	10	0.40	0.00	0.40	0.00
................TGTGTGTGTGTGTGTGTGT.............................................................................................................	19	19	0.21	0.11	0.00	0.11
..........TGTGTGTGTGTGTGTGTGT...................................................................................................................	19	19	0.21	0.11	0.00	0.11
..............TGTGTGTGTGTGTGTGTGTGT.............................................................................................................	21	11	0.36	0.09	0.00	0.27
..........TGTGTGTGTGTGTGTGTGTGT.................................................................................................................	21	11	0.36	0.09	0.00	0.27
..............TGTGTGTGTGTGTGTGTGT...............................................................................................................	19	19	0.21	0.11	0.00	0.11
.................GTGGGTGTGAGTGTGGGTGGTA.........................................................................................................	22	1	3.00	0.00	0.00	3.00
...............GTGTGGGTGTGxGTGTGGGT.............................................................................................................	19	1	3.00	3.00	0.00	0.00
............CGTGCGTGTGTGTGAGTG..................................................................................................................	18	2	1.50	0.00	0.00	1.50
.................GTGTGTGTGTGTGTGTGTG............................................................................................................	19	21	0.14	0.00	0.10	0.05
...........GTGTGTGTGTGTGTGTGTG..................................................................................................................	19	21	0.14	0.00	0.10	0.05
...............GTGTGTGTGTGTGTGTGTG..............................................................................................................	19	21	0.14	0.00	0.10	0.05
.............GTGTGTGTGTGTGTGTGTG................................................................................................................	19	21	0.14	0.00	0.10	0.05
...........GTGTGTGTGTGTGTGTGTGTGTGTG............................................................................................................	25	4	0.75	0.25	0.00	0.50
...........GTGTGTGTGTGTGTGTGTGTGTGT.............................................................................................................	24	5	0.60	0.40	0.20	0.00

droYak2 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrX:3486274-3486412 +

90.95

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAA----AACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GGCGCG--CTTGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCA---AAACTAAGCGCGTATAATTTACTTGATTTTTCTACAT--CACTTACAGTTAGTAATCAAATTGCACAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................................................................ATTTTTCTACAT--CACTTACAGT...................	22	2	1.50	1.00	0.50	0.00	0.00	0.00
........................................................................................................TTTTTCTACAT--CACTTACAGT...................	21	2	1.00	0.00	0.00	0.50	0.50	0.00
............TGTGTGTGTGTGTGTGTGA...................................................................................................................	19	31	0.06	0.06	0.00	0.00	0.00	0.00
..........TGTGTGTGTGTGTGTGTGA.....................................................................................................................	19	31	0.06	0.06	0.00	0.00	0.00	0.00
..........TGTGTGTGTGTTTGATTG......................................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25	0.00
..............................................................................................ATTTGCTTGATTTTTCGA..................................	18	2	0.50	0.00	0.00	0.00	0.50	0.00
.............CTGTGTGCGTGAGTGTGG...................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
...........GTGTGTGTGCGTGTGTGT.....................................................................................................................	18	32	0.03	0.00	0.00	0.00	0.03	0.00
...........GTGAGTGAGTGTGAGTGT.....................................................................................................................	18	3	0.33	0.33	0.00	0.00	0.00	0.00
........CTTGCGTGGGTGTGTGA.........................................................................................................................	17	2	0.50	0.00	0.00	0.00	0.50	0.00
.......................................................................................................ATTTTTATACAT--CACTTAGAG....................	21	2	0.50	0.50	0.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTT....................................................................................................................	18	41	0.02	0.02	0.00	0.00	0.00	0.00
...............GTGTGTGTGCGTGTGTGT.................................................................................................................	18	32	0.03	0.00	0.00	0.00	0.03	0.00
.....................................AATCGGATTTCGTAAAACGCATTTA....................................................................................	25	2	0.50	0.00	0.00	0.00	0.00	0.50
...........GTGTGTGTGTGTGTGTGTGTGT.................................................................................................................	22	41	0.02	0.00	0.00	0.00	0.02	0.00
.........TTGTGTGTGTGCGTGCGTGT.....................................................................................................................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
..........TGTGTGTGTGCGTGTGTGT.....................................................................................................................	19	29	0.03	0.00	0.00	0.03	0.00	0.00
...........GTGTGCGTGTGTGTGTGT.....................................................................................................................	18	33	0.03	0.00	0.00	0.03	0.00	0.00
...TTG--CTTGTGTGTGTGTGT...........................................................................................................................	18	7	0.14	0.00	0.00	0.14	0.00	0.00
...........GTGTGTGTGTGTGCGTGTGT...................................................................................................................	20	22	0.05	0.00	0.00	0.05	0.00	0.00
...............GTGAGTGTGAGTGTGAGT.................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
..............TGTGTGTGTGCGTGTGTGT.................................................................................................................	19	29	0.03	0.00	0.00	0.03	0.00	0.00
.............GTGGGTGTGTGGGTGTGGGTG................................................................................................................	21	2	0.50	0.00	0.00	0.50	0.00	0.00
..........TGTGTGTGTGTGTGTGTGTG....................................................................................................................	20	21	0.05	0.05	0.00	0.00	0.00	0.00
..........TGTGTGTGTGTGTGTGTT......................................................................................................................	18	41	0.02	0.02	0.00	0.00	0.00	0.00
..........TGTGTGTGTGTGTGTGTG......................................................................................................................	18	31	0.03	0.00	0.00	0.03	0.00	0.00
.........GTGTGAGTGTGTGTGAGT.......................................................................................................................	18	10	0.10	0.00	0.00	0.10	0.00	0.00
.............GTGGGTGTGTGGGTGTGGGT.................................................................................................................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
...........GTGTGTGTGTGTGCGTGT.....................................................................................................................	18	31	0.03	0.00	0.00	0.03	0.00	0.00
............TGTGTGTGTGTGTGTGTG....................................................................................................................	18	31	0.03	0.00	0.00	0.03	0.00	0.00
...........GTGTGTGTGTGTGTGTGTGTGTG................................................................................................................	23	36	0.03	0.00	0.00	0.03	0.00	0.00
.........GTGTGTGTGTGTGTGCGTGT.....................................................................................................................	20	22	0.05	0.00	0.00	0.05	0.00	0.00
.............GTGTGTGTGTGAGTGTGGGAGC...............................................................................................................	22	2	0.50	0.00	0.00	0.50	0.00	0.00
..........TGTGTGTGCGTGTGAGTGA.....................................................................................................................	19	2	0.50	0.00	0.00	0.50	0.00	0.00
..........TCTGTGTGCGTGTGAGTGT.....................................................................................................................	19	2	0.50	0.00	0.00	0.50	0.00	0.00
..........TGCGTGTGTGCGTGAGTGT.....................................................................................................................	19	3	0.33	0.00	0.00	0.33	0.00	0.00

chrX:15158564-15158711 -

46.04

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGC-ATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATT-------------TTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GTCGCGTGCCTGCGTGTACGTGTGC--GTGCGCCTGTGTTCGTTTTTTGTTATTTTTTTTATAACCAACGACAACAACAGAAGTAAATAAAATTCACAAAATTAACGGTGTATATATTTAAATGATTTGGTTGTTTTTGGT------GGCGTGCCG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................TTTGTTCGTTTTTTGGTA........................................................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
...................GTGTGC--GTGCGTGTGTGT.....................................................................................................................	18	11	0.09	0.00	0.00	0.09	0.00	0.00
....AGTGACTGCGTGTACGTG......................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.............GTGTATGTGTGT--GTGCG............................................................................................................................	17	16	0.06	0.00	0.00	0.00	0.06	0.00

chrX:3486276-3486422 +

43.42

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAA----AACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA---------- G-----CGCTTGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCA---AAACTAAGCGCGTATAATTTACTTGATTTTTCTACAT--CACTTACAGTTAGTAATCAAATTGCACAAAATGGCAGAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................................................................ATTTTTCTACAT--CACTTACAGT.............................	22	2	1.50	1.00	0.50	0.00	0.00	0.00
........................................................................................................TTTTTCTACAT--CACTTACAGT.............................	21	2	1.00	0.00	0.00	0.50	0.50	0.00
............TGTGTGTGTGTGTGTGTGA.............................................................................................................................	19	31	0.06	0.06	0.00	0.00	0.00	0.00
..........TGTGTGTGTGTGTGTGTGA...............................................................................................................................	19	31	0.06	0.06	0.00	0.00	0.00	0.00
..........TGTGTGTGTGTGTGTGTT................................................................................................................................	18	41	0.02	0.02	0.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTG..............................................................................................................................	18	31	0.03	0.00	0.00	0.03	0.00	0.00
........CTTGCGTGGGTGTGTGA...................................................................................................................................	17	2	0.50	0.00	0.00	0.00	0.50	0.00
..............................................................................................ATTTGCTTGATTTTTCGA............................................	18	2	0.50	0.00	0.00	0.00	0.50	0.00
T-----TGCTTGTGTGTGTGTGT.....................................................................................................................................	18	7	0.14	0.00	0.00	0.14	0.00	0.00
.............GTGGGTGTGTGGGTGTGGGTG..........................................................................................................................	21	2	0.50	0.00	0.00	0.50	0.00	0.00
............TGTGTGTGTGTGTGTGTT..............................................................................................................................	18	41	0.02	0.02	0.00	0.00	0.00	0.00
...............GTGTGTGTGCGTGTGTGT...........................................................................................................................	18	32	0.03	0.00	0.00	0.00	0.03	0.00
.......................................................................................................ATTTTTATACAT--CACTTAGAG..............................	21	2	0.50	0.50	0.00	0.00	0.00	0.00
.........GTGTGTGTGTGTGTGCGTGT...............................................................................................................................	20	22	0.05	0.00	0.00	0.05	0.00	0.00
.........TTGTGTGTGTGCGTGCGTGT...............................................................................................................................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
...........GTGTGTGTGTGTGTGTGTGTGTG..........................................................................................................................	23	36	0.03	0.00	0.00	0.03	0.00	0.00
..........TGTGTGTGTGTTTGATTG................................................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25	0.00
...........GTGAGTGAGTGTGAGTGT...............................................................................................................................	18	3	0.33	0.33	0.00	0.00	0.00	0.00
..........TCTGTGTGCGTGTGAGTGT...............................................................................................................................	19	2	0.50	0.00	0.00	0.50	0.00	0.00
..............TGTGTGTGTGCGTGTGTGT...........................................................................................................................	19	29	0.03	0.00	0.00	0.03	0.00	0.00
..........TGCGTGTGTGCGTGAGTGT...............................................................................................................................	19	3	0.33	0.00	0.00	0.33	0.00	0.00
...............GTGAGTGTGAGTGTGAGT...........................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
.........GTGTGAGTGTGTGTGAGT.................................................................................................................................	18	10	0.10	0.00	0.00	0.10	0.00	0.00
..........TGTGTGTGTGTGTGTGTGTG..............................................................................................................................	20	21	0.05	0.05	0.00	0.00	0.00	0.00
...........GTGTGTGTGTGTGCGTGTGT.............................................................................................................................	20	22	0.05	0.00	0.00	0.05	0.00	0.00
..........TGTGTGTGTGCGTGTGTGT...............................................................................................................................	19	29	0.03	0.00	0.00	0.03	0.00	0.00
..........TGTGTGTGTGTGTGTGTG................................................................................................................................	18	31	0.03	0.00	0.00	0.03	0.00	0.00
...........GTGTGCGTGTGTGTGTGT...............................................................................................................................	18	33	0.03	0.00	0.00	0.03	0.00	0.00
...........GTGTGTGTGTGTGCGTGT...............................................................................................................................	18	31	0.03	0.00	0.00	0.03	0.00	0.00
...........GTGTGTGTGTGTGTGTGTGTGT...........................................................................................................................	22	41	0.02	0.00	0.00	0.00	0.02	0.00
.............GTGTGTGTGTGAGTGTGGGAGC.........................................................................................................................	22	2	0.50	0.00	0.00	0.50	0.00	0.00
..........TGTGTGTGCGTGTGAGTGA...............................................................................................................................	19	2	0.50	0.00	0.00	0.50	0.00	0.00
.....................................AATCGGATTTCGTAAAACGCATTTA..............................................................................................	25	2	0.50	0.00	0.00	0.00	0.00	0.50
.............CTGTGTGCGTGAGTGTGG.............................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
...........GTGTGTGTGCGTGTGTGT...............................................................................................................................	18	32	0.03	0.00	0.00	0.00	0.03	0.00
.............GTGGGTGTGTGGGTGTGGGT...........................................................................................................................	20	3	0.33	0.00	0.00	0.33	0.00	0.00

chrX:16161675-16161801 -

39.39

GGCGCGCACTG----------------------GTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACA-A ACCACTAAATGTCTGTGTGTCTAGTATAGGAGAAAGTAGGCGAGAAGGAGGAGGGGGAGAAAGGACAAGCGTAGAAAGGAGTACACTATAAACAACA-CAAGAACATCAACA-------------------------------------CAACAACAAGAACAGA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................GGAGAAGGAGGAGGAGGA...........................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
.........................................GAGAAGAAGGAGGGGA............................................................................................................	16	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................GCAAGAAGGAGGAGGAGG............................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
..........................................AGAAGGAGGAGGAGGAGC.........................................................................................................	18	3	0.33	0.00	0.00	0.33	0.00	0.00
.........................................GAGGAGGAGGAGGAGGA...........................................................................................................	17	4	0.25	0.00	0.00	0.00	0.25	0.00
...............................................GAGGAGGGGGAGGAAG......................................................................................................	16	3	0.33	0.00	0.00	0.00	0.33	0.00
...............................................AAGGAGGGGGAGGAAG......................................................................................................	16	2	0.50	0.00	0.00	0.00	0.50	0.00
..............................................GGAGGAGGGGGATCAAGGA....................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.........................................GAGAAGGAGGAGGGGGAGA.........................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00

chr3R:24131532-24131703 +

34.95

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAA--------A-------------------------ATCGGATTTCGTAAAACGCATTTAATTGTT-----AACAGCAGCAAA-------AACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGT-TAGTAATCAAATTGCACAA
AACACGCGCCTGTGTGGGTA-ATAAGCG------AAATAATGAATAATAATCAATTCTAATTGGCACTTGGTTGGAATGCCATAAAACGCATTGCATCACGTAGTTAAAAAC---AAAAAGGAACAAGAAACGCAACGCATTTGTTGCTTCC---TC---TCGACAACTCGACAACGAAGCTGCATGG

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chrX:7011213-7011318 +

30.39

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GATTTGC----------------TAGCTTTTGCAATGAATAACTCATCTAAAATCATATTTTCATATCAGCAGGATCTCAAATATGTTTTTTTTTTTTTATTTCATCTTTTT--------------------TTTTTTACAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................................................TATGAGTTTTTTTTTTTA..........................................	18	6	0.17	0.00	0.00	0.00	0.17	0.00
..................................................................................CATGTTTATTTTTTTTTA..........................................	18	5	0.20	0.00	0.20	0.00	0.00	0.00
.............................................................................TCAAAxATGTTTTTTGTTTTT............................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................TATGTATTTTTTTTTTTA..........................................	18	15	0.07	0.00	0.00	0.00	0.07	0.00
.................................................................................AAATGTTTTTTTTTTTTTA..........................................	19	6	0.17	0.17	0.00	0.00	0.00	0.00

chrX:18832264-18832289 +

12.14

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
--------------------------------------------------------------------------------------------------------------------TTTCAAATTATATTCAACTTGCTGAA

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

droEre2 - 3 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4690:2335787-2335926 -

95.77

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GGCGCGCGCTTGTGTGTGTGTGCGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCC--CTTACAGTTAGTAATCAAATTGCACAA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........GTGTGTGTGTGCGTGTGTC................................................................................................................	19	9	0.33	0.11	0.00	0.00	0.22
...GTGCGCTTGTGTGTGTGTTC.......................................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00
..............TGTGTGTGCGAGTGTGTG..............................................................................................................	18	14	0.07	0.00	0.00	0.00	0.07
.............................................................AATTGTGAACAGCAGCAG...............................................................	18	3	0.33	0.00	0.00	0.00	0.33
..........TGTGTGTGTGTGCGTGTGTTGG..............................................................................................................	22	3	0.33	0.00	0.00	0.00	0.33
..........CGTGTGTGTGTGCGTGTGT.................................................................................................................	19	7	0.14	0.00	0.00	0.00	0.14
...........GTGTGTGTGTGCGTGTGTGTGTG............................................................................................................	23	13	0.08	0.00	0.00	0.00	0.08
............TGCGTGTGTGCGTGTGTG................................................................................................................	18	7	0.14	0.00	0.00	0.00	0.14
.............GTGTGAGTGCGAGTGCGGGTG............................................................................................................	21	3	0.33	0.00	0.00	0.00	0.33
.......GCTCGTGTGTGTGTGTGA.....................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
.GCGCGCGTGTGTGTGTGT...........................................................................................................................	18	6	0.17	0.00	0.00	0.00	0.17
................AGTGTGCGAGTGTGTGTG............................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25
..............TCTGTGTGCGAGTGTGAG..............................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
...........GTGTGTGTGCGCGAGTGT.................................................................................................................	18	7	0.14	0.00	0.00	0.00	0.14
...........GTGTGTGTGTGCGTGTGT.................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00
...GCGCGCCTGTGTGTGTGA.........................................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25
..........TGTGTGTGTGTGCGAGTGT.................................................................................................................	19	5	0.20	0.00	0.00	0.00	0.20
...GCGCGCGTGTGTGTGTGT.........................................................................................................................	18	6	0.17	0.00	0.00	0.00	0.17
...........GTGTGTGTGTGCGTATGT.................................................................................................................	18	14	0.07	0.07	0.00	0.00	0.00
............TGTGTGTGTGCGAGTGAGAGT.............................................................................................................	21	3	0.33	0.00	0.00	0.00	0.33
..........TGTGTGTGTGTGTGAGTGAG................................................................................................................	20	4	0.25	0.00	0.00	0.00	0.25
...................GTGCGAGTCTCGGTGGAA.........................................................................................................	18	3	0.33	0.33	0.00	0.00	0.00
...........GTGTGTATGTGCGGGTGT.................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00
..........TGTGTGTGTGTGTGAGTGC.................................................................................................................	19	8	0.13	0.00	0.00	0.00	0.13
..........TGTGTGTGTGTGCGAGTGAGAGT.............................................................................................................	23	3	0.33	0.33	0.00	0.00	0.00
..............TGTGTGTGCGTGTGTGTG..............................................................................................................	18	50	0.02	0.00	0.00	0.00	0.02
................TGTGTGAGAGTGTGTGTGG...........................................................................................................	19	3	0.33	0.00	0.33	0.00	0.00

scaffold_4690:2335778-2335924 -

44.67

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA--------- G---CGCGCTTGTGTGTGTGTGCGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCC--CTTACAGTTAGTAATCAAATTGCACAAAATGCGAGA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........GTGTGTGTGTGCGTGTGTC.........................................................................................................................	19	9	0.33	0.11	0.00	0.00	0.22
.............GTGTGAGTGCGAGTGCGGGTG.....................................................................................................................	21	3	0.33	0.00	0.00	0.00	0.33
................TGTGTGAGAGTGTGTGTGG....................................................................................................................	19	3	0.33	0.00	0.33	0.00	0.00
...........GTGTGTATGTGCGGGTGT..........................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00
..........CGTGTGTGTGTGCGTGTGT..........................................................................................................................	19	7	0.14	0.00	0.00	0.00	0.14
...........GTGTGTGTGTGCGTGTGTGTGTG.....................................................................................................................	23	13	0.08	0.00	0.00	0.00	0.08
..............TGTGTGTGCGAGTGTGTG.......................................................................................................................	18	14	0.07	0.00	0.00	0.00	0.07
..........TGTGTGTGTGTGTGAGTGAG.........................................................................................................................	20	4	0.25	0.00	0.00	0.00	0.25
G---CGCGCGTGTGTGTGTGT..................................................................................................................................	18	6	0.17	0.00	0.00	0.00	0.17
............TGTGTGTGTGCGAGTGAGAGT......................................................................................................................	21	3	0.33	0.00	0.00	0.00	0.33
..............TCTGTGTGCGAGTGTGAG.......................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
.............................................................AATTGTGAACAGCAGCAG........................................................................	18	3	0.33	0.00	0.00	0.00	0.33
..............TGTGTGTGCGTGTGTGTG.......................................................................................................................	18	50	0.02	0.00	0.00	0.00	0.02
................AGTGTGCGAGTGTGTGTG.....................................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25
...........GTGTGTGTGTGCGTATGT..........................................................................................................................	18	14	0.07	0.07	0.00	0.00	0.00
G---TGCGCTTGTGTGTGTGTTC................................................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00
............TGCGTGTGTGCGTGTGTG.........................................................................................................................	18	7	0.14	0.00	0.00	0.00	0.14
..........TGTGTGTGTGTGTGAGTGC..........................................................................................................................	19	8	0.13	0.00	0.00	0.00	0.13
...........GTGTGTGTGCGCGAGTGT..........................................................................................................................	18	7	0.14	0.00	0.00	0.00	0.14
...................GTGCGAGTCTCGGTGGAA..................................................................................................................	18	3	0.33	0.33	0.00	0.00	0.00
..........TGTGTGTGTGTGCGAGTGAGAGT......................................................................................................................	23	3	0.33	0.33	0.00	0.00	0.00
G---CGCGCCTGTGTGTGTGA..................................................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25
...........GTGTGTGTGTGCGTGTGT..........................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00
..........TGTGTGTGTGTGCGAGTGT..........................................................................................................................	19	5	0.20	0.00	0.00	0.00	0.20
..........TGTGTGTGTGTGCGTGTGTTGG.......................................................................................................................	22	3	0.33	0.00	0.00	0.00	0.33
.......GCTCGTGTGTGTGTGTGA..............................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33

scaffold_4690:2335796-2335932 -

42.74

------GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TTCCAAGGCGCGCGCTTGTGTGTGTGTGCGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCC--CTTACAGTTAGTAATCAA---------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.................GTGTGTGTGTGCGTGTGTC................................................................................................................	19	9	0.33	0.11	0.00	0.00	0.22
.........................GTGCGAGTCTCGGTGGAA.........................................................................................................	18	3	0.33	0.33	0.00	0.00	0.00
.........GCGCGCCTGTGTGTGTGA.........................................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25
......................AGTGTGCGAGTGTGTGTG............................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25
.................GTGTGTATGTGCGGGTGT.................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00
...................................................................AATTGTGAACAGCAGCAG...............................................................	18	3	0.33	0.00	0.00	0.00	0.33
....................TCTGTGTGCGAGTGTGAG..............................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
.................GTGTGTGTGTGCGTATGT.................................................................................................................	18	14	0.07	0.07	0.00	0.00	0.00
.................GTGTGTGTGCGCGAGTGT.................................................................................................................	18	7	0.14	0.00	0.00	0.00	0.14
.........GCGCGCGTGTGTGTGTGT.........................................................................................................................	18	6	0.17	0.00	0.00	0.00	0.17
..................TGTGTGTGTGCGAGTGAGAGT.............................................................................................................	21	3	0.33	0.00	0.00	0.00	0.33
.............GCTCGTGTGTGTGTGTGA.....................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
...................GTGTGAGTGCGAGTGCGGGTG............................................................................................................	21	3	0.33	0.00	0.00	0.00	0.33
................CGTGTGTGTGTGCGTGTGT.................................................................................................................	19	7	0.14	0.00	0.00	0.00	0.14
....................TGTGTGTGCGAGTGTGTG..............................................................................................................	18	14	0.07	0.00	0.00	0.00	0.07
................TGTGTGTGTGTGCGAGTGT.................................................................................................................	19	5	0.20	0.00	0.00	0.00	0.20
..................TGCGTGTGTGCGTGTGTG................................................................................................................	18	7	0.14	0.00	0.00	0.00	0.14
.................GTGTGTGTGTGCGTGTGT.................................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00
.......GCGCGCGTGTGTGTGTGT...........................................................................................................................	18	6	0.17	0.00	0.00	0.00	0.17
....................TGTGTGTGCGTGTGTGTG..............................................................................................................	18	50	0.02	0.00	0.00	0.00	0.02
................TGTGTGTGTGTGCGAGTGAGAGT.............................................................................................................	23	3	0.33	0.33	0.00	0.00	0.00
................TGTGTGTGTGTGTGAGTGAG................................................................................................................	20	4	0.25	0.00	0.00	0.00	0.25
................TGTGTGTGTGTGCGTGTGTTGG..............................................................................................................	22	3	0.33	0.00	0.00	0.00	0.33
.........GTGCGCTTGTGTGTGTGTTC.......................................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00
................TGTGTGTGTGTGTGAGTGC.................................................................................................................	19	8	0.13	0.00	0.00	0.00	0.13
......................TGTGTGAGAGTGTGTGTGG...........................................................................................................	19	3	0.33	0.00	0.33	0.00	0.00
.................GTGTGTGTGTGCGTGTGTGTGTG............................................................................................................	23	13	0.08	0.00	0.00	0.00	0.08

droFic1 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000454045:81404-81534 -

77.1

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GGCGCGCGC--------GTATGTGTGTGTGGGTGGAAAATCCGATTTCGTAGAACGCATTTAATTGTTAACAACAACAA-ATCGTGTCTAATTTACCTGACTTTTCTATAT--CATTTTCAGTTAGTAATTAAATTGCACAA

Size

Hit Count

Total Norm

scf7180000454045:815119-815240 -

35.68

GGCGCGCACTGGTGTGTGTGTGTGAGT---GTGGGTGGAAAATCGGATTTC---GTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTG-----------------CACAA
CACACACACACGCACAAACATGTGCAAAACACACACA------CACACTTGTAAAAAAGTCGCGCCTAAGTGTATGCAAT-GCAAAAAGATGCAGAAAA------------------------------------CTGAAACAGAGAAAAGGAATTGTGAGCGAA

Size

Hit Count

Total Norm

scf7180000453906:87269-87377 +

34.98

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCA--AAAACGTGTATA----------------ATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GAAAATCTC----------------------------------------TAATATATATTTAGTTGTTAATAACATTTTCAGAATTTTCATATGAAGTATTCACTTGTTTTCATTTAATTTTTATATGG-TAAATCATAGTTATTAATTA----------

Size

Hit Count

Total Norm

scf7180000453904:786342-786521 -

28.32

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAA---------------------------------T--------TGCACA-----------A
AACCCATTGGGCCTCACGTGCGGATTTTTTTTCCAATTATAAAATCCCATACCCCAGTCT--------------GATACAGCCATCTCTTTCCCTCCGAATGTATCTGCATCTCACCTTGGGCTTTCGCCCCCTTGTTTGTGTTTTTGCTGAGATTCGCGACCGGCATTGAACAGGCGCCCAGAAAGAGGCAGA

Size

Hit Count

Total Norm

scf7180000453906:88265-88310 +

22.86

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GT-GCGTCCAAGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTTATTT-----------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000454038:570192-570224 -

16.37

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
G---TGTGCTAGTGTGTGTGCGAGTGTGTGTGTGGA----------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000453851:451806-451848 -

15.35

GGCGCGCACTG-GTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GCC-TGCGCTGAATGTTTGGCCGAGAACTGAGGCAAACAACCG----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000454039:326452-326459 +

5.0

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
TG--------------------------------------------------------------------------------------------------------------------------------------GCACAA

Size

Hit Count

Total Norm

None

droEug1 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409548:787929-788067 -

78.49

GGCGCGC----ACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTA-TAATTTACCTG-ATTTTTCTACATCTCACTTACAGTTAGTAATCA--AATTGCACAA
GGCGCGCGCGTACTTGTGTGTGTG--CGTGTGTGGGTGGAAAATACGATTTCGTAAAACGCATTTCATTGTTAACA-------AAACGTGTGTTAATTTACCTAAACTTTTCTTTACCT--TTTACAGTTAGTAATCAAAAATTGCACAA

Size

Hit Count

Total Norm

scf7180000409692:867944-868087 -

46.05

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAA----------AACG--------------TGTATAATTTACCTGATTTTTCTACATCTCACTTAC-------AGTTAGTAAT---------CAAATTGCACAA
GA---------GTGTGTGTGTGTGTGTGTG--TG------------------------TCTGCCTGTTTGTAACGGTTCTCAAGGTCATGAACGAAAGAGACAGCAACTGAGGGCTTTCCCCGGCTTCGCTGCCAACTGT---CAAAAATGATTTAGTAGTTCAAAGCCGCGTTTTGCGTCT

Size

Hit Count

Total Norm

scf7180000408176:859017-859162 +

40.14

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTAT--AATTTACC-----------------------------------TGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCA---CAA
CACACTCACTCACTCACA------------------------------------CACTGTCAGTCATGAACACTACAAGAAAAGTATAGTAAAACTGCCGTAATATTTAATAATTAAAGAAGGAAAACCAAAACCAAAAACCAAAAACCACTTGTATAGTCATCAAGCAGAACCCAAGGCAA

Size

Hit Count

Total Norm

scf7180000409230:562027-562078 +

27.14

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AACGCGCACGTGTATGTGTGTGTGTGTGTGTGTGGAGAAGCTTACTTTGCAA------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000409555:366093-366159 +

23.62

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTT-ACAGTTAGTAATCA---AATTGCACAA
--------------------------------------------------------------------AACAGCAGTGAAATA-----------ACATAATAACCTTGTGTTTTTTTTGTCGATCAGAAATCGGAAATATCCACAA

Size

Hit Count

Total Norm

scf7180000409110:169564-169606 -

22.86

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
T---------TGTGTGTGTGTGTGTTTGTTGTTGGAGAATACGAATACGAAA------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000408994:178530-178571 +

19.29

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
TGTGCATGTGTGTGTGTGTGTGTGTGTGTGTATGAGCGATCG----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000409692:867894-867935 -

17.86

GGCGCGCA--------CTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AGTGCGAAAAATATATGTAGTATATATGTGTGAGTGTGTGTG------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000409548:96242-96282 -

17.14

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
CAC----AATGGCGGAAATGTGTGAATG-AGGTGGCCACTCGAAT-------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000409548:788467-788493 -

10.93

Size

Hit Count

Total Norm

scf7180000409110:164177-164186 -

2.86

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AGTT---------ATATGT---------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000409466:3058372-3058374 +

1.43

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
CGA-------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

droBia1 - 3 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000301760:317175-317313 -

83.43

GGCGCGCACTGGTGTGTGTGTGTGAGT--GTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GGCGCGCGCCTGTGTGTGTGTGTGTGTGGGTGGGTGGAAAATCCGATTTCGTAAAACGCATTTAATTGTAAGCAACAACAAAAACGTGTGTAATTTACCTGCTTCTT-TCCATATCGTTTACAGTTAGTA----AATTGCACAA

Size

Hit Count

Total Norm

scf7180000301760:317281-317320 -

20.0

-------GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
TTCCAAAGGCGCGCGCCTGTGTGTGTGTGT--GTGTGGGTGG-----------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000302421:1835346-1835381 +

18.57

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GGCGGGTGTCCGTGTGTGTGTGTGAGTGTGTACGAA----------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droTak1 - 4 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000415352:1030839-1030982 +

84.57

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTT----TTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GGCGCGCGCCCATGTGTGCGTGT--GTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAACAACAAGAACGTGTGTAATTTACCTGATTTTTTTTTCTCAATTTCCCTTACAGTTAGTAATCAAATTGCACAA

Size

Hit Count

Total Norm

scf7180000415281:273218-273335 -

37.39

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTT---------------------------AGTAATCAAATTGCACAA
TCCTCTTTTTTTGTTTTGTATGTGTGTGCGAGTGGAAT------------TAAACGCACACATATGCC-----------------------------TGGGCACA------CACACTC--ACTTAGGCACGTTTCGGGCTTCAAGCGGAAAAGTA--GAGAAAGCACAA

Size

Hit Count

Total Norm

scf7180000413892:100369-100373 -

3.57

Size

Hit Count

Total Norm

None

scf7180000415078:339167-339173 +

2.86

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
TGAA-GCA--------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

droEle1 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000491272:492430-492559 +

74.55

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTG--TATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GGCGCGC--------GTATGTGTGTGTGTGGGTGGAAAATCCGATTTCGTAAAACGCATTTAATTGTTAATAACA----AAACGTGGGTGTAATTTACATGATTTTTCTACAT--TATTCACAGTTAGTAAGCAAACTGCACAA

Size

Hit Count

Total Norm

scf7180000491282:168401-168546 -

45.09

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAA--------------CGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AGGGAGAGCTTGCGCAT-----TGAGGAAGTGGGGAAAAACGAATCGCGGGATAAAGATATCCAGATTCAAATTTGAATTTTTTCTTAAGGAAAACGGTTTTCAGTTTTTGCTATATTTAGGCATTTT---TAAAACTATT--TAAAAGTTGTAAT

Size

Hit Count

Total Norm

droRho1 - 3 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000776532:19535-19662 +

71.47

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTA--TAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GGCGCGTGTT----------TGTGTGTGTGGATGAAAAATTCGATTTCGTAAAACGCATTTAATTGTTAACAACA----AAACGTGTATGTAATTTACCTGATTTTTCTACAT--TATTTACAGTTAGTAAGCAAGCTGCACAA

Size

Hit Count

Total Norm

scf7180000778436:28014-28148 +

45.04

GGCGCG-----CACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTA-AAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATA-----ATTTACCTGATTTTTCTACA---------TCTCACTTACAGTT----------AGTAATCAAATTGCA-----CAA
GGTCTAAAGACCATTGG--------------------------ATTGGACTT-GTAAATATATACATTT---TTATCA--------AATGTCTAAAACTTGATATACAACATTTTTTTATGTAAGAGATGTCTCACA----GATAAAGTAAAGAAGTATTCTTTCTGTACGCTTTAA

Size

Hit Count

Total Norm

scf7180000763478:34922-34927 -

2.86

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GCGGAA----------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

droKik1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302469:619020-619157 -

52.11

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATC-------------------------GGATTTCGTAAAACGCATTTAA--TTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
-------ACTAGTTCGTGTGAGTGTATGTGTGTGTGAGATCTCCTGAATAGGTTTCTGTGTGTGTGTGATTTCGTAAAACGCATTTAAATTTGTTAATAA---AAAAAACGTGTGTA-TTTAT-------------------CTTACAGTTAGA--ACCAATTGCACAA

Size

Hit Count

Total Norm

scf7180000302682:595447-595588 -

52.0

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTG-------------------------------------------------------ATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GACTTGATGTGTTGTGTGTGTGTGTGTGTGTGTGTATG--------------------------------------------TGTGTGTGGTT-----GGTTGTTGTGTAAGCAAAAACAATATAAAGAACAAGATGCGTTAAAGCAACCAACAATTTCCTTAAAAATCGCATGCCGTTACTCATCTTATT------

Size

Hit Count

Total Norm

scf7180000299277:174545-174661 +

47.47

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATT--------TAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AGTTTTA------------------------ATGAAAAATATTGTTAAATATAACCTATTCGCATGTATATAAATTAATGAATTAAAAAAGGTAT---TTTTACATAATTTTTATTATTATTAATTTAA----ATAATTAAAT--CACAA

Size

Hit Count

Total Norm

scf7180000302685:78372-78543 +

34.82

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAA-------------------------------------------------------AATCGGATTT-C--GTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTA--CATCTCACTTACAGT-TAGTAATCAAATT--GCACAA
TGCTCCCACTGTTGTT-GTCATTG-GCGCGACTGAAAAGGAGAAAGAGACTAAAGGAGAAAGAGAGAGAGAGAGTGAGAGAAAAAGCAAAGAAAACAGATGTGCAAGAAAA------------------------------ATGCATTGTCTTTCGGTTTTTTGTAAGCATTTT-TTTACAGTGCAATGTTTAAAGTGTGTTTAA

Size

Hit Count

Total Norm

scf7180000302685:629129-629166 -

15.0

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AGAAATTATGAGAGTGTATGTATGAGAGTGTATGTACA--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000302398:331305-331322 -

8.57

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AATGT----------------------------------------------------------------------------------------------------------------------------TGAATTAGCACAA

Size

Hit Count

Total Norm

None

droAna3 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13417:338832-338967 -

61.03

GGCGCGCACTGGTGTGTGTGTGTGAGTGTG------G---GTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTT-----------AACAGCAGCA--AAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GAGACGTAT--GTGTGTGTGTGTGAGTGTGAGTGTGGGAGGAGGAAAAGCGGATTTCGTAAAACGCATTTACTAATTTTCTTAAAAATAACAAAAACAACAAAACGTGT------------------------TTCCATTACAGTTAGAA--CCAATTGCACAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........T--GTGTGTGTCTGTGTGTGTGA.....................................................................................................................................	21	5	2.80	0.00	2.80	0.00	0.00
...................................................................................................................................................................A	18	27	0.41	0.04	0.37	0.00	0.00
........A--GTGTGTGTGTGTGTGTG........................................................................................................................................	18	27	0.41	0.04	0.37	0.00	0.00
....AGTGT--GTGTGTGTGTGTG............................................................................................................................................	18	27	0.41	0.04	0.37	0.00	0.00
............AGTGTGTGTGTGTGTGTG......................................................................................................................................	18	27	0.41	0.04	0.37	0.00	0.00
............TGTGTGTGAATxxGTGTGAG....................................................................................................................................	18	2	5.00	1.00	2.00	2.00	0.00
...........GTGTGTGTGTGTGTGTGT.......................................................................................................................................	18	20	0.50	0.00	0.50	0.00	0.00
............TGTGTGTGAATxxGTGTGAGT...................................................................................................................................	19	2	4.50	3.50	1.00	0.00	0.00
........A--GTGTGTGTGTGTGTGTGT.......................................................................................................................................	19	22	0.36	0.00	0.36	0.00	0.00
...................................................................................................................................................................A	19	22	0.36	0.00	0.36	0.00	0.00
............TGTGTGTGTGTGTGTGTG......................................................................................................................................	18	23	0.30	0.00	0.30	0.00	0.00
........T--GTGTGTGTGTGTGTGTG........................................................................................................................................	18	23	0.30	0.00	0.30	0.00	0.00
...............GTGTGTGTGAATGTGTGT...................................................................................................................................	18	9	0.78	0.22	0.33	0.22	0.00
........T--GTGTGTGTGTGTGAGTGTGTGTGC.................................................................................................................................	25	4	1.50	0.00	1.50	0.00	0.00
........T--GTGTGTGTGTGTGTGTGT.......................................................................................................................................	19	19	0.32	0.00	0.32	0.00	0.00
........T--GTGTGTGTGTGTGTGTGTG......................................................................................................................................	20	15	0.33	0.00	0.33	0.00	0.00
.....................GTGGGTGTGGGTGTGGGA.............................................................................................................................	18	2	2.00	0.00	2.00	0.00	0.00
........T--GTGTGTGTGTGTGAGTGTGTGTG..................................................................................................................................	24	5	0.60	0.00	0.60	0.00	0.00
............TGTGTGTGTGTGTGTGTGAGTGTGTG..............................................................................................................................	26	4	0.75	0.00	0.75	0.00	0.00
........G--GTGTGTGTGTGTGTGTGT.......................................................................................................................................	19	21	0.14	0.05	0.10	0.00	0.00
...........GTGTGTGTGTGTGAGTGTGTGTGCG................................................................................................................................	25	4	0.75	0.00	0.75	0.00	0.00
............TGTGTGTGTGTGTGGGTG......................................................................................................................................	18	32	0.09	0.00	0.09	0.00	0.00
........T--GTGTGTGTGTGTGGGTG........................................................................................................................................	18	32	0.09	0.00	0.09	0.00	0.00
............TGTGTGTGTGTGAGTGTGTGTGCG................................................................................................................................	24	5	0.60	0.00	0.60	0.00	0.00
................TGTGTGTGTGTGTGGGTG..................................................................................................................................	18	32	0.09	0.00	0.09	0.00	0.00
.......AT--GTGTGTGTGTCTGTGTGTG......................................................................................................................................	21	10	0.30	0.00	0.30	0.00	0.00
........T--GTGTGTGTGTGTGAGTGTGTGTGCG................................................................................................................................	26	4	0.75	0.00	0.75	0.00	0.00

scaffold_12929:2831986-2832147 +

42.2

GGCGCGCACTGG-----------------------------------------------TGTGTGTGTG---------TGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA AGCGAGCCCCGGCCATCTAGGCATTGCGTATACGCCGCGTTGGCCAAACAGAAAACGAGTGTGTGTTTGTAGAATGTGTTTAAGTGGCAGGAAAGTTGAATTTTT-------------ATT--------------------GAGCAAA-TTCACGAGTCCCTTAAATAACACATAAAAATA--AATAAAAATACAAAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................................................GCAGGAAAGTAGATTTTT..............................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
.............................................................................................................................................................................TAAAAAAA--AAGAAAAATA.....	18	35	0.03	0.00	0.00	0.00	0.03
........................TGCGTATACGCCGGGTTGGCA.........................................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
......................................................................................GCAGGAAAGTAGATTTTTT-------------................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
................................................CAGAAAACGTGTGTGTTT....................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................................ACAGAxGAAAATA--AATAAAA........	19	4	0.25	0.00	0.00	0.25	0.00
..........................................................................TGCGTTTAAGTGACAGG...........................................................................................................	17	1	1.00	0.00	0.00	1.00	0.00

scaffold_12943:3754894-3755058 +

40.54

GGC----------GCGCACTGGTG---------TGTGTGTGTGAGTGTGGGTG-------GAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCA-------AAAACGTGTATAATTTACCTGATTTTTC-------TACATCTCACTTACAGTTA----GTAATCAAATTGCACAA GATACATTAGCGTACGCAGGGGTGTGCCTGCCGTGTGTGTAAGAGTGTGTGTGTTTAATGACAATTTGACACTGGCAAAATACATGAAATTGA-----GCAATTTATATGCCAAATGTGTA--A----TTTGATGTTCGGCCGAGATACATTCCTGTTTCTGCCAAGCAG-------AT-G--TCG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............................................................................AATAxATGAGATTGA-----GCAAT...................................................................................	19	1	1244.00	539.00	96.00	173.00	436.00
..............................................................................AATAxATGAGATTGA-----GCAA....................................................................................	18	1	20.00	0.00	1.00	13.00	6.00
..............................................................................AATAxATGAGATTGA-----GCA.....................................................................................	17	1	9.00	0.00	0.00	9.00	0.00
..............................................................................AATAxATGATATTGA-----GCAAT...................................................................................	19	1	5.00	2.00	1.00	0.00	2.00
...............................................................................ATACxTGAGATTGA-----GCAAT...................................................................................	18	1	3.00	0.00	0.00	2.00	1.00
..............................................................................AATACxTGAGATTGA-----GCAAT...................................................................................	19	1	2.00	1.00	0.00	0.00	1.00
..............................CCGTGTGTGTGAGTGTGTG.........................................................................................................................................	19	1	2.00	1.00	0.00	1.00	0.00
..............................................................................AATAxATGACATTGA-----GCAAT...................................................................................	19	1	2.00	0.00	0.00	1.00	1.00
.............................GCCGTGTGTGTGAGTGTGT..........................................................................................................................................	19	1	2.00	2.00	0.00	0.00	0.00
.............................GCCGTGTGTGTGAGTGTGTG.........................................................................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
..............................................................................AATAxATGAAATTGA-----GCAATA..................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
...............................................................................ATACxTGACATTGA-----GCAAT...................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..............................................................................AATAxATGAAATTGA-----ACAAT...................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AAATACxTGAGATTGA-----GCA.....................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.............................................................................CAATAxATGAAATTGA-----GCAAT...................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...............................................................................ATTCATGATATTGA-----GCAAT...................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
................................GTGTGTGTGTGAGTGTGT........................................................................................................................................	18	27	0.04	0.04	0.00	0.00	0.00
.................................TGTGTGGCAGAGTGTGTGT......................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...............................................................................ATAxATGAAATTGA-----GCAAT...................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.................................TGTGTGTGTGAGTGTGTGTGTT...................................................................................................................................	22	5	0.20	0.00	0.20	0.00	0.00
.............................................................................AAATAxATGAGATTGA-----GCAAT...................................................................................	20	1	1.00	0.00	1.00	0.00	0.00

scaffold_13335:352613-352743 +

38.99

GGCGCGCACTGGTGTGTGTGTGTGAG--TGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GGGGCGAACAGGTAAGAGCAAGCGAGACAGCTGGATGACGAGCAGGCGTGGCCAAATGAGAAAAAATACTGG--------GAAATTCTGGCAACACAACCGATTATGGCCAATTTAAGGCAGAGCACG-----AAGTAGAAGAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...........................................................GAAAAAGTACxGG--------GAAATT..........................................................	18	1	1.00	0.00	0.00	1.00	0.00
........................AAGCAGCTGGATGACGAGC.....................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................GAGCACG-----AAGGACAAGAA	18	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................CAGAGxACG-----AAGAAGAAGA.	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_13335:762788-762952 +

37.6

GGCGCGCACTGGTGTGTGTGTGTGAG---TGTGGGTGGAAAATCGGATTTCGTAAAACGCATT--------------------------TAATTGT------T-----------------------------------AACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GACTCGTTCTTTTTTTTTTTTGGTTGCATTTTGTGTTGC-------------TGCGACGCATAAAATCCAGAAAGAAATGTACGGAGATTGATTGTATTATTTAACAAGACTAATAAATAAATAAATAATATTAGAAAAACATCAGTGGCGACTT----------------------------------AATGTCGCAGTTAATTTGTATGC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................................................................................................GAAGAACACCAGTGGCGA............................................................	18	1	2.00	1.00	0.00	1.00	0.00
............................................................ATAAACTCCGGAAAGAAA......................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
......................................................................................................................................GAAGAACATCAGTGGCGAA...........................................................	19	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGTAGGGAGATTGATT......................................................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................ATATTGATTGGATTATTTA............................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...........................................................................................ATTGAATTATTTAGCAAG.......................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.....................................................................AGAAAGAAATGTACGGAGATTGATT......................................................................................................................	25	1	1.00	1.00	0.00	0.00	0.00
............TTTTTTTGTGGCTGCATTTT....................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................................................................AGAAGAACACCAGTGGCG.............................................................	18	1	1.00	1.00	0.00	0.00	0.00

scaffold_13417:338527-338627 -

32.19

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCG-----TAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GT-GCGCGTGTGTGTGTGTTAGTGTGTTTGTGTGCAAAACAATAAATAAACAAAAAAAAAACAAATAATAATAAATA---------AAAAATAAAATAAACTAGAAAATA-------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................TTTTTGTGCAAATCAATA.......................................................................................................	18	1	7.00	0.00	2.00	3.00	2.00
.....................GTGTGTGTGTGTGCGAAA............................................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
........TGTGTGTGTGTGAATGTGT........................................................................................................................	19	11	0.18	0.00	0.18	0.00	0.00
...........GTGTGTGTGAATGTGTTT......................................................................................................................	18	4	0.50	0.00	0.25	0.25	0.00
........TGTGTGTGTGTGAGTGTGTGTGTGTG.................................................................................................................	26	4	0.50	0.00	0.50	0.00	0.00
........TGTGTGTGTGTGAGTGTGTGTGTG...................................................................................................................	24	6	0.33	0.00	0.33	0.00	0.00
.......GTGTGTGTGTGTGGGTGTG.........................................................................................................................	19	23	0.09	0.04	0.04	0.00	0.00
.....GCGTGCGTGTGTGTTTGTGT..........................................................................................................................	20	2	1.00	0.00	1.00	0.00	0.00
........TGTGTGTGTGTGAGTGTC.........................................................................................................................	18	12	0.17	0.00	0.17	0.00	0.00
.....GTGTGTGTGTGTGTTAGAGT..........................................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00
...........................................AAAAAAACAGAAAAAAAACA....................................................................................	20	4	0.25	0.00	0.00	0.00	0.25
.......GTGTGTGTGTGTTxGTGTGTG.......................................................................................................................	20	28	0.04	0.00	0.04	0.00	0.00
.....GTGTGTGTGTGTGTGAGTG...........................................................................................................................	19	23	0.04	0.00	0.04	0.00	0.00
.....................................AAAAAAAAATAAACAAAAA...........................................................................................	19	43	0.02	0.00	0.02	0.00	0.00
..................CTAGTGTGTTTGGGTGCA...............................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.........GTTTGTGTGTTAGTGTGTGT......................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...........GTGTGTGTATGTGTGTTTG.....................................................................................................................	19	12	0.08	0.08	0.00	0.00	0.00
.T-GCGCGTGTGTGTGAGTG...............................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00
...............................................AAACAAAAAAACAACAAAGA................................................................................	20	4	0.25	0.00	0.00	0.00	0.25
...............................................AAACAAAAAAAGGACAAA..................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.....GTGTGTGTGTGTGTGAGT............................................................................................................................	18	30	0.03	0.03	0.00	0.00	0.00
GT-GTGCGTGTGTGTGTGTA...............................................................................................................................	19	8	0.13	0.00	0.13	0.00	0.00
.........................................................................................................AAAAA-------------------------------------	20	6	0.17	0.00	0.00	0.00	0.17
.................................................AGAAAAAAAAAACAAACA................................................................................	18	19	0.05	0.00	0.00	0.00	0.05
...........................................................................................................ATA-------------------------------------	20	3	0.33	0.00	0.33	0.00	0.00
GT-GCGTGTGTGTGTGGGT................................................................................................................................	18	9	0.11	0.00	0.11	0.00	0.00
GT-GCGTGTGTGTGTGTGTTTGTGTG.........................................................................................................................	25	3	0.33	0.00	0.33	0.00	0.00
.....GCGTGTGTGTGTGTGTGTGTG.........................................................................................................................	21	9	0.11	0.00	0.11	0.00	0.00
.........................................................................................................AAAGA-------------------------------------	20	5	0.20	0.00	0.00	0.00	0.20
.........GTGTGTGTGTGAGTGTGT........................................................................................................................	18	27	0.04	0.04	0.00	0.00	0.00
...............................................AAACAGAAAAAAAAAAAA..................................................................................	18	38	0.03	0.00	0.00	0.00	0.03
............TGTGTGTGAGTGTGTTTTTG...................................................................................................................	20	5	0.20	0.00	0.00	0.00	0.20
GT-GCGTGTGTGTGTGAGT................................................................................................................................	18	9	0.11	0.11	0.00	0.00	0.00
.................................................ACAAAAAAAACACAAAAA................................................................................	18	13	0.08	0.00	0.00	0.00	0.08
................................................AATCAAAAAAAAACAAATAA...............................................................................	20	3	0.33	0.00	0.00	0.00	0.33
.............................................AAAAACAGAAAAAAAACAA...................................................................................	19	8	0.13	0.00	0.00	0.00	0.13
...................................................................ATAACAGATA---------AAAAATAA.....................................................	18	2	0.50	0.00	0.00	0.00	0.50
......................................................................................................AGAAAACA-------------------------------------	20	2	0.50	0.00	0.00	0.00	0.50
...............................................AAAAAAAAAAAAAACAAA..................................................................................	18	31	0.03	0.00	0.00	0.00	0.03
GT-GCGCGTGTGTGTGTGTT...............................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.....GCGTGTGTGTGTGTGTGTG...........................................................................................................................	19	18	0.06	0.00	0.06	0.00	0.00
.............GTGTGTTTGTGTGTGTGTGTG.................................................................................................................	21	12	0.08	0.00	0.08	0.00	0.00
............TGTGTGTTTGTGTGTGTG.....................................................................................................................	18	31	0.03	0.00	0.03	0.00	0.00
.........................................ATAAATAAACAGAATAAAA.......................................................................................	19	3	0.33	0.00	0.00	0.33	0.00
...............GTGTGAGTGTGTTTGTGTA.................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
.................................................ACAAAAAAAAAACAAACAA...............................................................................	19	12	0.08	0.00	0.00	0.00	0.08
.............................................................................................................A-------------------------------------	18	4	0.25	0.00	0.00	0.00	0.25
.........GTGTGTGTGTTTGTGTGGT.......................................................................................................................	19	3	0.33	0.33	0.00	0.00	0.00
............TGTGTGTGAGTGTGTTTGTGTA.................................................................................................................	22	2	0.50	0.00	0.00	0.00	0.50
.................................................ACAAAAAAAAAAGAGATA................................................................................	18	5	0.20	0.20	0.00	0.00	0.00
.................................................................................................AAACTAGAACATA-------------------------------------	18	2	0.50	0.00	0.00	0.00	0.50
...................................AAAACAGTAAAAAAACAAA.............................................................................................	19	2	0.50	0.00	0.00	0.00	0.50
.........................................................................................................AAACA-------------------------------------	18	5	0.20	0.00	0.00	0.00	0.20
..........TGTGTGTGTGAGTGTGTTTGTG...................................................................................................................	22	7	0.14	0.00	0.00	0.00	0.14
...............................................AAACAAAAAAAAGAAAAA..................................................................................	18	51	0.02	0.00	0.00	0.00	0.02
.....GTGTGTGTGTGTGTAAGTG...........................................................................................................................	19	11	0.09	0.09	0.00	0.00	0.00
.T-GCGTGTGTGTGTGTGTG...............................................................................................................................	18	26	0.04	0.00	0.04	0.00	0.00
............TGTGTGTTxGTGTGTGTGTGTG.................................................................................................................	21	25	0.04	0.00	0.04	0.00	0.00
...................................AAAACAATCAATAAACAAA.............................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
......TGTGTGTGTGTGCTAGTG...........................................................................................................................	18	7	0.14	0.00	0.14	0.00	0.00
........TGTGTGTGTGTTTGTGTGT........................................................................................................................	19	30	0.03	0.03	0.00	0.00	0.00
...........................................AAACAAACAAAAAAAAGA......................................................................................	18	11	0.09	0.00	0.00	0.00	0.09
GT-GTGCGTGTGTGTGTGTGAGTGTG.........................................................................................................................	25	3	0.33	0.33	0.00	0.00	0.00
.........................................ATAAAAAGACAAAAAAAAA.......................................................................................	19	12	0.08	0.00	0.00	0.00	0.08
.....GTGTGTGTGTGTGTGAGTGTG.........................................................................................................................	21	14	0.07	0.00	0.07	0.00	0.00
.............................................ATTAAAAAAAAAAAAACAAA..................................................................................	20	17	0.06	0.06	0.00	0.00	0.00
.............................................................................................................A-------------------------------------	20	19	0.05	0.05	0.00	0.00	0.00
.....GTGTGTGTGTGTGTTGGT............................................................................................................................	18	14	0.07	0.00	0.07	0.00	0.00
......TGTGTGTGTGTGxTAGTGTGTGT......................................................................................................................	22	15	0.07	0.00	0.07	0.00	0.00
..........................................................................................................AAAA-------------------------------------	19	6	0.17	0.00	0.00	0.17	0.00
......CGTGTGCGTGTGTTAGCG...........................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00
.............GTGTGTTGGTGTGTGTGTGTG.................................................................................................................	21	4	0.25	0.00	0.25	0.00	0.00
........TGTGTGTGTGTCAGTGTGT........................................................................................................................	19	9	0.11	0.00	0.11	0.00	0.00
.....GCGTGTGTGTGTGTTTGTGTGTGT......................................................................................................................	24	2	0.50	0.00	0.50	0.00	0.00
...................................................AAAAAAAAAACAAATAAGA.............................................................................	19	9	0.11	0.00	0.00	0.00	0.11
...........GTGTGTGTCTGTGTGTTTG.....................................................................................................................	19	10	0.10	0.00	0.00	0.10	0.00
...............................................AAACAAAAAAAAACCACA..................................................................................	18	7	0.14	0.00	0.00	0.00	0.14
......................................................AAAAAAACGAACAATAATAAA........................................................................	21	1	1.00	0.00	0.00	0.00	1.00
....................................AAACAACAAAGAAACAAAA............................................................................................	19	2	0.50	0.00	0.00	0.00	0.50
.......TTGTGTGTGTGTGAGTGTG.........................................................................................................................	19	12	0.08	0.00	0.08	0.00	0.00
..........TGTGTGTGTTTGTTTGTT.......................................................................................................................	18	5	0.20	0.00	0.20	0.00	0.00
........TGTGTGTGTGTGTGTGTGTT.......................................................................................................................	20	27	0.04	0.00	0.04	0.00	0.00

scaffold_13337:13387028-13387135 +

28.25

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAA-------ACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTG-------------CA--------CAA GTTTTAAATCAAAGTCTTTT------------------------------AAAGAACTTTATTCATTTTCTTATTAACAATGATACAAAAACCCACAAAAAA--------------------------------AATAAAATGAAGCAAAGCAAATGCGCAAACTGGAAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
....................................................................................ACAGAAACCCAAAAAAAA--------------------------------A...................................	19	1	1.00	0.00	0.00	0.00	1.00
....................................................................................AAAAAAACCCAAAAAAAA--------------------------------A...................................	19	5	0.20	0.00	0.00	0.00	0.20
...................................................................................AACAAAAACCGACAAAAAA--------------------------------....................................	19	1	1.00	0.00	0.00	0.00	1.00
....................................................................................ACAACAACCCACAAAACA--------------------------------....................................	18	1	1.00	0.00	0.00	0.00	1.00
......................................................................................AAAAACCCACATACAA--------------------------------AA..................................	18	2	0.50	0.00	0.00	0.00	0.50

scaffold_13340:14480002-14480105 -

26.16

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA AGTACGAGCAAGTGCA-GCATACGAGAGAGAGAGAGAGAGAGTGTTACAGG-------------------------------------GGGCCCACTGGAAGCCCCCACAACACCCGCACACACACACACACACATACACAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.......................GAGAGAGAGAGAGAGAGA.....................................................................................................	18	40	0.15	0.08	0.05	0.00	0.03
.........................GAGAGAGAGAGAGAGAGA...................................................................................................	18	40	0.15	0.08	0.05	0.00	0.03

scaffold_13266:9784527-9784548 -

10.0

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_13335:341920-341933 +

5.0

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_13335:1541154-1541157 -

2.14

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AAAA------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

droBip1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000396573:132829-133007 +

41.8

GGCGCGCACTG-----------------------GTGTGTGTGTGTGAGTGTGGGTG-------GAAAATCGGATTTCGTAAAACGCATTTAATTGTT---------------------------------AACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
CTCGCGCGCGTGTTAGTGCTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGAAAACGGAAAAATGGATTTCGTAAAACGCATTTACTAATTTTTCTTAAAAATAATAATAAAATCAACAACTACAACAACAACAACATTGTGT------------------------TTCCATTACAGTTAGA--ACCAATTGCACAA

Size

Hit Count

Total Norm

scf7180000396006:12010-12155 +

40.83

GGCGCGCACTGGTGTGTGTGT-GTGAGTGTG-GGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTA---CCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GTTACATTTTGTGTTGTTG-CGACGCATAAAATCCAGACGAGTAAAATAAGTGAACGGCCATTGATTGTATTATTTAACAAAAAAATAAATAAATAAATATCAGAAAAACATCAGTGGCGACTTAATGTCGCAGTTAATTTGTATGC

Size

Hit Count

Total Norm

scf7180000396794:21098-21204 -

37.23

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAA-TTGCACAA
TGTCCGC--------------------------GGAAAAACCTA--TC-GAAAATTTTTTTTTTAGCCCACGGTCGATAAAAC-------ATTTTCCTGTGTGCCTCTCGTCGTGTACAAAAAAAAAAATAATATATACAAAA

Size

Hit Count

Total Norm

scf7180000396573:132985-133135 +

35.43

GGCGCG------------CACTGGTGTGTGTGTGTGAGTGT--GGGTGGAAAATCGGATTTCGTAAAAC---------------GCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
TACAGTTAGAACCAATTGCACAAAA-TAGACGAATTAAGGTAGCTGGAGAAAAGGAAAAACGGCGAAACGGAGAAGGATGATGAACGGCGAAGAAGAAGCAGCAGCAA--------------CAGCAGCAGCAGCAGCAGCATAAGAACAATCAATAATAATAATA-----

Size

Hit Count

Total Norm

scf7180000394714:114933-115050 +

35.02

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCG----------------------TAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCATTGCCATTCATTTCGCCATTTTGGTGCATCAACAAGGGGTCTGTGGGCGTGGGCGGTGGCAGAGG----------------------------------------------ATAAAGAGGCGAAA

Size

Hit Count

Total Norm

dp4 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrXL_group1e:6745504-6745680 -

40.42

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAA--------------------------AATCGGATTTCGTAAAACGCATTTAATTG-TTA---------ACAGCAG---------CAAAAACGTGTATAATTTACCTGAT---TTTTCTACATCTC-ACTTACAGTTAGTAATCAAATTGCACAA CGCGTGCGTATGTGTGTGTGTATGTGCATGCGAGGGGGGATATGCATATTTGTTAATGTGCTAGGAACGATTCTGTAAAACGAATTTATTATATTATATCTATTAAT--TACCAATTTATTAAATAATGTGTTTG---------TGTTTTCTTTTGTATCCAAAATTGCAGT-AG-AATCA-ATTGCACAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......GTACGTGTGTGTGTGTGTGC....................................................................................................................................................................	20	6	1.33	0.00	1.33	0.00	0.00
.......GTACGTGTGTGTGTGTGTG.....................................................................................................................................................................	19	46	0.11	0.04	0.04	0.02	0.00
......CGTACGTGTGTGTGTGTGTG.....................................................................................................................................................................	20	6	0.33	0.00	0.17	0.17	0.00
..........TGTGTGTGTGTGTGTGCA...................................................................................................................................................................	18	8	0.25	0.00	0.00	0.25	0.00
.......GTTTGTGTGTGTGTTTGTG.....................................................................................................................................................................	19	41	0.05	0.02	0.00	0.02	0.00
..................................................................................................................AATTATTAAAAAATGTGTT..........................................................	19	1	2.00	0.00	2.00	0.00	0.00
......CGTACGTGTGTGTGTGTGTGC....................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......GTGTGTGTGTATGTATGTG.....................................................................................................................................................................	19	42	0.02	0.02	0.00	0.00	0.00
.....................................................................................................................................TG---------TGTTTTATTTTGTATACA.............................	20	1	1.00	0.00	0.00	1.00	0.00
...............................................................................ACGAGTTTGTTATATTAT..............................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
......TGTATGTGTGTGTGTATGTA.....................................................................................................................................................................	20	7	0.14	0.14	0.00	0.00	0.00
.........ATGTGTGTTTGTATGTGCAA..................................................................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
...GTGTGCATGTGTGTGTGT..........................................................................................................................................................................	18	45	0.02	0.02	0.00	0.00	0.00
..............................................................................................................................ATGTGTGTG---------TGTTTTTTTTT....................................	20	1	1.00	1.00	0.00	0.00	0.00
.......GTGTGTGTGTGGGTATGTG.....................................................................................................................................................................	19	38	0.03	0.03	0.00	0.00	0.00
...............................................................................ACGAATTTGTTATATAAT..............................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.......GTATGTGCGTGTGTGTGT......................................................................................................................................................................	18	49	0.02	0.00	0.02	0.00	0.00
....TGTGTATGTGTGTGTGTCTG.......................................................................................................................................................................	20	58	0.02	0.02	0.00	0.00	0.00
........TGTGTGTGTGAGTATGTGCA...................................................................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
................TGTGTATGTGCATGCGTGTG...........................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.................................GAGGGGATAAGCATATTT............................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
....................................GGGAGATGCATATTTTTT.........................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
............TGTGTGTGTTGGTGCATG.................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......GTATGTATGTGTGTATGTA.....................................................................................................................................................................	19	6	0.17	0.00	0.17	0.00	0.00

chrXL_group1e:8996274-8996399 -

39.65

GGC----------GCGCACTGGTGTGTGTGTGT----GAGTGTGGGTGGAAAATCGGATTTCGTAAAA-CGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GAATTTACAAATAAAATACCAAAAACAAAATATGAATAAGTACAACAAAA--------TACCAAGAAACTACAACAAAATATA--------TGAATAAATACAAAAAAAATTCAACGTAATTACATATTAAATAC---------------CGAATGA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.........AATAAAAAACAAAAAACAAAA...............................................................................................................................	21	3	0.33	0.00	0.33	0.00	0.00

chr2:28250390-28250498 +

33.99

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TGTGTGTCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTCACGCATGAAGC------AAATGCTGACAGCAAAGCAAACAGACAGAAAA--------------------------CA-GCAGCAAACATGAAGCAAAG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................TGTGTGTGTGTGTGTGTGTGTGTG....................................................................................................	24	35	0.71	0.11	0.00	0.60	0.00
..............TGTGTGTGTGTGTGTGTGTGTGTG........................................................................................................	24	35	0.71	0.11	0.00	0.60	0.00
............TGTGTGTGTGTGTGTGTGTGTGTG..........................................................................................................	24	35	0.71	0.11	0.00	0.60	0.00
..........TGTGTGTGTGTGTGTGTGTGTGTG............................................................................................................	24	35	0.71	0.11	0.00	0.60	0.00
................TGTGTGTGTGTGTGTGTGTGTGTG......................................................................................................	24	35	0.71	0.11	0.00	0.60	0.00
...............GTGTGTGTGTGTGTGTGTGTGTGTG......................................................................................................	25	28	0.29	0.04	0.00	0.25	0.00
...........GTGTGTGTGTGTGTGTGTGTGTGTG..........................................................................................................	25	28	0.29	0.04	0.00	0.25	0.00
.................GTGTGTGTGTGTGTGTGTGTGTGTG....................................................................................................	25	28	0.29	0.04	0.00	0.25	0.00
.........GTGTGTGTGTGTGTGTGTGTGTGTG............................................................................................................	25	28	0.29	0.04	0.00	0.25	0.00
.............GTGTGTGTGTGTGTGTGTGTGTGTG........................................................................................................	25	28	0.29	0.04	0.00	0.25	0.00
..............TGTGTGTGTGTGTGTGTGTGTGTGT.......................................................................................................	25	27	0.22	0.04	0.00	0.19	0.00
.............GTGTGTGTGTGTGTGTGTGTGTG..........................................................................................................	23	41	0.15	0.00	0.00	0.15	0.00
.........GTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................	23	41	0.15	0.00	0.00	0.15	0.00
...............GTGTGTGTGTGTGTGTGTGTGTG........................................................................................................	23	41	0.15	0.00	0.00	0.15	0.00
..................TGTGTGTGTGTGTGTGTGTGTGTGT...................................................................................................	25	27	0.22	0.04	0.00	0.19	0.00
...................GTGTGTGTGTGTGTGTGTGTGTG....................................................................................................	23	41	0.15	0.00	0.00	0.15	0.00
................TGTGTGTGTGTGTGTGTGTGTGTGT.....................................................................................................	25	27	0.22	0.04	0.00	0.19	0.00
...........GTGTGTGTGTGTGTGTGTGTGTG............................................................................................................	23	41	0.15	0.00	0.00	0.15	0.00
............TGTGTGTGTGTGTGTGTGTGTGTGT.........................................................................................................	25	27	0.22	0.04	0.00	0.19	0.00
.................GTGTGTGTGTGTGTGTGTGTGTG......................................................................................................	23	41	0.15	0.00	0.00	0.15	0.00
..........TGTGTGTGTGTGTGTGTGTGTGTGT...........................................................................................................	25	27	0.22	0.04	0.00	0.19	0.00
..............TGTGTGTGTGTGTGTGTGTGTGTGTG......................................................................................................	26	22	0.23	0.00	0.00	0.23	0.00
...............GTACGTGTGTGTGTGTGTG............................................................................................................	19	46	0.11	0.04	0.04	0.02	0.00
.................GTACGTGTGTGTGTGTGTG..........................................................................................................	19	46	0.11	0.04	0.04	0.02	0.00
.............GTACGTGTGTGTGTGTGTG..............................................................................................................	19	46	0.11	0.04	0.04	0.02	0.00
............TGTGTGTGTGTGTGTGTGTGTGTGTG........................................................................................................	26	22	0.23	0.00	0.00	0.23	0.00
................TGTGTGTGTGTGTGTGTGTGTGTGTG....................................................................................................	26	22	0.23	0.00	0.00	0.23	0.00
..........TGTGTGTGTGTGTGTGTGTGTGTGTG..........................................................................................................	26	22	0.23	0.00	0.00	0.23	0.00
...................GTACGTGTGTGTGTGTGTG........................................................................................................	19	46	0.11	0.04	0.04	0.02	0.00
...........GTACGTGTGTGTGTGTGTG................................................................................................................	19	46	0.11	0.04	0.04	0.02	0.00
.....GTACGTGTGTGTGTGTGTG......................................................................................................................	19	46	0.11	0.04	0.04	0.02	0.00
..............TGTGTGTGTGTGTGTGTGTGTGTT........................................................................................................	24	17	0.24	0.00	0.06	0.18	0.00
................TGTGTGTGTGTGTGTGTGTGTGTT......................................................................................................	24	17	0.24	0.00	0.06	0.18	0.00
..........TGTGTGTGTGTGTGTGTGTGTG..............................................................................................................	22	49	0.08	0.00	0.00	0.08	0.00
............TGTGTGTGTGTGTGTGTGTGTG............................................................................................................	22	49	0.08	0.00	0.00	0.08	0.00
..................TGTGTGTGTGTGTGTGTGTGTG......................................................................................................	22	49	0.08	0.00	0.00	0.08	0.00
..............TGTGTGTGTGTGTGTGTGTGTG..........................................................................................................	22	49	0.08	0.00	0.00	0.08	0.00
......................TGTGTGTATGTGTGTxTTTGT...................................................................................................	20	3	1.33	1.33	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGTGTT..........................................................................................................	24	17	0.24	0.00	0.06	0.18	0.00
................TGTGTGTGTGTGTGTGTGTGTG........................................................................................................	22	49	0.08	0.00	0.00	0.08	0.00
....................TGTGTGTGTGTGTGTGTGTGTG....................................................................................................	22	49	0.08	0.00	0.00	0.08	0.00
..........TGTGTGTGTGTGTGTGTGTGTGTT............................................................................................................	24	17	0.24	0.00	0.06	0.18	0.00
...........GTGTGTGTGTGTGTGTGTGTGTGTGG.........................................................................................................	26	9	0.33	0.22	0.00	0.11	0.00
..........TGTGTGTGTGTGTGTGTGT.................................................................................................................	19	35	0.09	0.03	0.00	0.06	0.00
..............TTTGTGTGTGTGTGTGTG..............................................................................................................	18	49	0.06	0.02	0.02	0.02	0.00
....................TGTGTGTGTGTGTGTGTGT.......................................................................................................	19	35	0.09	0.03	0.00	0.06	0.00
............TTTGTGTGTGTGTGTGTG................................................................................................................	18	49	0.06	0.02	0.02	0.02	0.00
................TTTGTGTGTGTGTGTGTG............................................................................................................	18	49	0.06	0.02	0.02	0.02	0.00
............TGTGTGTGTGTGTGTGTGT...............................................................................................................	19	35	0.09	0.03	0.00	0.06	0.00
..................TTTGTGTGTGTGTGTGTG..........................................................................................................	18	49	0.06	0.02	0.02	0.02	0.00
..........TTTGTGTGTGTGTGTGTG..................................................................................................................	18	49	0.06	0.02	0.02	0.02	0.00
....................TCTGTGTGTGTATGTGTGTT......................................................................................................	20	6	0.50	0.50	0.00	0.00	0.00
....................TTTGTGTGTGTGTGTGTG........................................................................................................	18	49	0.06	0.02	0.02	0.02	0.00
.............GTGTGTGTGTGTGTGTGTGTGTGTGG.......................................................................................................	26	9	0.33	0.22	0.00	0.11	0.00
................TGTGTGTGTGTGTGTGTGT...........................................................................................................	19	35	0.09	0.03	0.00	0.06	0.00
..................TGTGTGTGTGTGTGTGTGT.........................................................................................................	19	35	0.09	0.03	0.00	0.06	0.00
..............TGTGTGTGTGTGTGTGTGT.............................................................................................................	19	35	0.09	0.03	0.00	0.06	0.00

chrXL_group1e:974838-975015 +

30.76

GGCGCGCACTGGTG------------------------TGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTT--TCTACATCTCACTTACAGTTAGT-----------AATCAAATTGCACAA AAACAGCGCTGGGAGCAGAAGATCAGCAGCACAGCCAACGTCAACGTCAGCGTCAGCGTCAAGTGCAACAGCGAGCGAAACACGTCACGAACAAAAACAACAAAAATTAGCACCT-ATCACTGCTTGCTCTTTACCGTTCGATTGCTGGTGCTGTTGCTGGGTCAAAGCAGTTGTACGC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.........................................CAGCGTCAGCGTCAGCTTCA......................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
..........................................................................................................................................TCGCTTGCTGCTGCTGTT.......................	18	49	0.02	0.02	0.00	0.00	0.00

chr4_group3:1201110-1201144 +

11.43

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA AAAGAATGCCGTTTGCTTGGTGGGGCTGTTGCTGG-----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............CTGCTTGGTGGGGCTGCT................................................................................................................	18	1	12.00	12.00	0.00	0.00	0.00
..........GATTGCTTGGTGGGGCTT..................................................................................................................	18	1	3.00	3.00	0.00	0.00	0.00
...............CTTGGTGGGGCTTGTGCT.............................................................................................................	18	1	2.00	2.00	0.00	0.00	0.00
..............GCTTGGTGGGGCTTGTGCTG............................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..............GCTTGGTGGGGCTxTTTCTG............................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.........GGTCTGCTTGGTGGGGCT...................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.........GGATTGCTTGGTGGGGCT...................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..........GTCTGCTTGGTGGGGCTT..................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
................TTGGTTGGGTTGTTGCTGG-----------------------------------------------------------------------------------------------------------	19	1	1.00	1.00	0.00	0.00	0.00
..........GTGTGCTTGGTGGGGCTT..................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.........CGACTGCTTGGTGGGGCT...................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
........CCGxTGGCTTGGTGGGGCT...................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.............TGCTTGGTGGGGCTGCTC...............................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.........GGTTTGCTTGGTGGGGCTT..................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...............CTTGGTGGGGCTxTTTCTG............................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..............GCTTGGTGGGGCTTTTTCT.............................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

chrXR_group6:7401125-7401133 -

3.57

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
ATCGAAGAT-------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

chrXR_group8:2624868-2624873 -

2.86

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GGA----------------------------------------------------------------------------------------------------------------------------------------CGA

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

droPer1 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_20:728747-728881 +

48.53

G-GCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAA-CGCATTTAA---------TTGTTAAC-AGCAGCAAAAACGTG--TATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GTGTGCG--TGTGTGTGTGCGTGTGTGTGTAAAAAGAAAAAAGGATTTCGTAAAAACAAATCAAACATAACATTATGTTGGCCCACGGCAAA-GCGAACTAATAAATTTCCAAGCAAATCCACA---------------AAAATCAAA-TG--CAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..GTGCG--TGTGTGTGTGTGTGC....................................................................................................................................	20	50	0.24	0.06	0.18	0.00	0.00	0.00
..GTGCG--TGTGTGTGTGTGT......................................................................................................................................	18	47	0.17	0.02	0.15	0.00	0.00	0.00
..GTGCG--TGTGTGTGTGTGTG.....................................................................................................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
..GTGCG--TGTGTGTGTGTGTGCG...................................................................................................................................	21	41	0.12	0.10	0.02	0.00	0.00	0.00
..........GTGTGTGTGCGTGTGTGAGTG.............................................................................................................................	21	30	0.10	0.10	0.00	0.00	0.00	0.00
.....CG--TGCGTGTGTGTGTGTGTG.................................................................................................................................	20	48	0.06	0.06	0.00	0.00	0.00	0.00
............GTGTGTGTGTTTGTGTGTA.............................................................................................................................	19	49	0.06	0.06	0.00	0.00	0.00	0.00
GTGTGCG--TGTGTGTGTGGT.......................................................................................................................................	19	9	0.33	0.33	0.00	0.00	0.00	0.00
.CGTGCG--TGTGTGTGTGTGTG.....................................................................................................................................	20	48	0.06	0.06	0.00	0.00	0.00	0.00

super_1:5739898-5740028 +

46.79

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCAT-----TTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G---CGAACGGACGTGTGTGGTTCCTTGT----------TCGTTGTTCGTGCAGCGCTTGGGAGGAAATTGTACACACAAGCAGAAAACAGAGCAAGACATTTTGTTGTTCACAAAAATTTGTGC--A-AAGAAGATAAATACACAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................GTTCGTGCAGCGCTTGGGA....................................................................................	19	1	2.00	1.00	0.00	0.00	0.00	1.00
........CGGACGTGTGTGGTTTCT.........................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................GCGCTTGGGAGGAAATTGT...........................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
.....GAACGGACGTGTGTGGTT............................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................GAATTTGxGC--A-AAGAAGAT..........	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................TCTTGT----------TCGTTGTTCGTGC...............................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00

super_11:667991-668160 -

33.71

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACA-----------------------------------------------------------------------------------------A AGCACCAAAAGCCGCCTCCGTTAACGCGCGCCTAAAAAA-----------------------------AACAACAACAACAACACGCGTGTTACA--------------------------------AATAAAAATACAAAAATATAGAAGGTTTTTTTTAGTTGCATTCAAAAATTGTTATTTTTTTCTCATATTTTTTTTGCTGTTCAATGTTAAATGTGAACCATAGA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..................................AAACA-----------------------------AACAACAGCAACAAC....................................................................................................................................................	20	1	4.00	0.00	0.00	0.00	0.00	4.00
...........................................................................................................................................................................................TCTCATAxTCTTTTTGCTG.........................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
............................................................................................................................................................TTTGATTTGCATTCAAAAA........................................................	19	1	2.00	0.00	0.00	1.00	1.00	0.00
............................................................................................................................................................TTTGAGTTGCATTCAAAAAGT......................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................................................................................................................................TTTGACTTGCATTCAAAAA........................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................AACAACAACAACAACAAGT................................................................................................................................................	19	47	0.02	0.00	0.02	0.00	0.00	0.00
.......................................................................................................................................................................................TTTTTCTxATATTTTTTTCGC...........................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................................................GTGxGTGACA--------------------------------AATAAAAAT...............................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................TTGCATTCAAAAAGTATT...................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................AAAA-----------------------------AACAAAAACAAGAA.....................................................................................................................................................	18	4	0.25	0.00	0.25	0.00	0.00	0.00

super_25:81218-81434 -

25.86

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGT--GGAAAATCG----------------GATTTCGTAAAACGCATTTAAT-----TGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTA---CATCTC-ACTTACAGTTAGTAATCAAATTGCACAA----------------------------------------------------- TTCGCGTGCGTGTATGTGTATGCGAGGGGGGATATGCATATTTGTTAATGTGCTAGGAACGATTCTGTAAAACGAATTTATTATATCTATTAATTCC--CAATTTATTAAATATTGTGTTTGTGTTTTCTTTTGTATCCAAAATTGCAGTA--GAATCA-ATTGCACAAAAAAGTGGAGAACACGGAAAGGAGAAGCAGAAGCAGCAGCAGAAGGAAGAAGC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
................................................................................................................................................................................GATAACACGGAAAGTAGAAGC.........................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.........................................................AAGGATTCTGAAAAACGA...................................................................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
.....................................................................................................................................................................................................AGAAGCAGAAGCATAAGGA......	19	2	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................................................................................................................................................AAGCAGCAGAAGAAGGCA.....	18	2	0.50	0.00	0.50	0.00	0.00	0.00
............................................................................................................................................................................................AGGAGAAGCAGCAGCACCAGC.............	21	46	0.02	0.00	0.02	0.00	0.00	0.00
.....GTGCGTGTATGTGTGTGTG......................................................................................................................................................................................................	19	46	0.02	0.02	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................AGGAGCGGCAGCAGAAGGA......	19	11	0.09	0.09	0.00	0.00	0.00	0.00
...GTGTGCGTGTATGTGTGT.........................................................................................................................................................................................................	18	50	0.02	0.00	0.00	0.00	0.02	0.00
................................................................................................................................................TGCTGTG--GAATCA-ATTGC.........................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................................................................................................................................................AGAAGCAGAAGCAGAAGCA............	19	41	0.02	0.00	0.02	0.00	0.00	0.00
...................................................................................................................................................................................................GCAGAAGGAGCAGCAGAA.........	18	17	0.06	0.00	0.06	0.00	0.00	0.00
..................................................................................................................................................................................................AGCAGAAGCAGCAGCAGAAG........	20	21	0.05	0.05	0.00	0.00	0.00	0.00
.....................................................................................................................................GTATCCAAAAxTGCAGCA--GAATCA-..............................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.................................................................................................................TTGTGTTTGTGTTTGTTTTTG........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................AGAAGCAGAAGCAGAAGCA......	19	41	0.02	0.00	0.02	0.00	0.00	0.00
.......................................................................................................................................................................................................AAGCAGCAGGAGAAGGAGGA...	20	5	0.20	0.20	0.00	0.00	0.00	0.00
........................................................................................................................................................................................GAAAAGGAGAAGGAGAAG....................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
.....GTGCGTGTTTGTGTATGAG......................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00

super_4:3445168-3445202 +

19.29

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA CCCTCGTACGTGTGTGTGTGTGTGTGTGTGGGGGG-----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...........GTGCGTGTGTGTGTGTGTGC...............................................................................................................	20	50	0.24	0.06	0.18	0.00	0.00	0.00
.........GTGCGTGTGTGTGTGTGTGC.................................................................................................................	20	50	0.24	0.06	0.18	0.00	0.00	0.00
.....GTGCGTGTGTGTGTGTGTGC.....................................................................................................................	20	50	0.24	0.06	0.18	0.00	0.00	0.00
...........GTGCGTGTGTGTGTGTGTG................................................................................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
...........GTGCGTGTGTGTGTGTGT.................................................................................................................	18	47	0.17	0.02	0.15	0.00	0.00	0.00
.........GTGCGTGTGTGTGTGTGT...................................................................................................................	18	47	0.17	0.02	0.15	0.00	0.00	0.00
.........GTGCGTGTGTGTGTGTGTG..................................................................................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
.....GTGCGTGTGTGTGTGTGT.......................................................................................................................	18	47	0.17	0.02	0.15	0.00	0.00	0.00
.....GTGCGTGTGTGTGTGTGTG......................................................................................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
..........TGTTTGTTTGTGTGTGTGTG................................................................................................................	20	40	0.18	0.10	0.03	0.00	0.05	0.00
..........TGTGTGTGTGTGTGTGTG..................................................................................................................	18	41	0.17	0.07	0.00	0.07	0.02	0.00
............TGTGTGTGTGTGTGTGTG................................................................................................................	18	41	0.17	0.07	0.00	0.07	0.02	0.00
.....GTGCGTGTGTGTGTGTGTGCG....................................................................................................................	21	41	0.12	0.10	0.02	0.00	0.00	0.00
..........TGTGTGTGTGTGTGTGTGT.................................................................................................................	19	32	0.16	0.16	0.00	0.00	0.00	0.00
.........GTGCGTGTGTGTGTGTGTGCG................................................................................................................	21	41	0.12	0.10	0.02	0.00	0.00	0.00
...........GTGCGTGTGTGTGTGTGTGCG..............................................................................................................	21	41	0.12	0.10	0.02	0.00	0.00	0.00
.............GTGTGTGTGTGTGGATGG...............................................................................................................	18	10	0.40	0.40	0.00	0.00	0.00	0.00
..........TGTGTGTGTGTGTGTGTGTGTG..............................................................................................................	22	50	0.08	0.08	0.00	0.00	0.00	0.00
........TGTGTGTGTGTGTGTGTGTGTG................................................................................................................	22	50	0.08	0.08	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGGATGG-----------------------------------------------------------------------------------------------------------	18	10	0.40	0.40	0.00	0.00	0.00	0.00
..........GGTGTGTGTGTGTGTGTGT.................................................................................................................	19	40	0.08	0.08	0.00	0.00	0.00	0.00
.............GTGTGCGTGTGTGTGTGGT..............................................................................................................	19	9	0.33	0.33	0.00	0.00	0.00	0.00
.........GTGTGTGTGCGTGTGTGAGTG................................................................................................................	21	30	0.10	0.10	0.00	0.00	0.00	0.00
........CGTGCGTGTGTGTGTGTGTGC.................................................................................................................	21	9	0.33	0.33	0.00	0.00	0.00	0.00
........CGTGCGTGTGTGTGTGTGTG..................................................................................................................	20	48	0.06	0.06	0.00	0.00	0.00	0.00
....CGTGCGTGTGTGTGTGTGTG......................................................................................................................	20	48	0.06	0.06	0.00	0.00	0.00	0.00
...........GTGTGTGTGTTTGTGTGTA................................................................................................................	19	49	0.06	0.06	0.00	0.00	0.00	0.00
.........GTTTGTTTGTGTGTGTGTGT.................................................................................................................	20	35	0.09	0.09	0.00	0.00	0.00	0.00
.........GTGTTTGTGTGTGTGTTTGTG................................................................................................................	21	32	0.09	0.09	0.00	0.00	0.00	0.00
........GGTGTGTGTGTGTGTGTGT...................................................................................................................	19	40	0.08	0.08	0.00	0.00	0.00	0.00
..........CGTGCGTGTGTGTGTGTGTG................................................................................................................	20	48	0.06	0.06	0.00	0.00	0.00	0.00
.........GTGTGTGTGTTTGTGTGTA..................................................................................................................	19	49	0.06	0.06	0.00	0.00	0.00	0.00
........CGAGTGTGTGTGTGTATGT...................................................................................................................	19	5	0.60	0.60	0.00	0.00	0.00	0.00
.............GTGTGTGTGTGTTTGTGGT..............................................................................................................	19	6	0.50	0.50	0.00	0.00	0.00	0.00
....CGTGCGTGTGTGTGTGTGTGC.....................................................................................................................	21	9	0.33	0.33	0.00	0.00	0.00	0.00
.................GTGGGTGTGTGTGGTGGG-----------------------------------------------------------------------------------------------------------	18	1	3.00	3.00	0.00	0.00	0.00	0.00

super_1:2671802-2671836 +

11.43

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA AAAGAATGCCGTTTGCTTGGTGGGGCTGTTGCTGG-----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..............GCTTGGTGGGGCTxTTTCTG............................................................................................................	19	1	2.00	2.00	0.00	0.00	0.00	0.00
..........GTTTGCTGTGTGGGGCTG..................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
..........GATTGCTTGGTGGGGCTT..................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
.............TGCTTGGTGGGGCTGCTC...............................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00

super_20:725234-725235 +

1.43

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GG--------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.T--------------------------------------------------------------------------------------------------------------------------------------------	20	7	0.14	0.14	0.00	0.00	0.00	0.00
GG--------------------------------------------------------------------------------------------------------------------------------------------	18	4	0.25	0.25	0.00	0.00	0.00	0.00
.G--------------------------------------------------------------------------------------------------------------------------------------------	19	6	0.17	0.17	0.00	0.00	0.00	0.00
.T--------------------------------------------------------------------------------------------------------------------------------------------	18	48	0.02	0.02	0.00	0.00	0.00	0.00
.G--------------------------------------------------------------------------------------------------------------------------------------------	18	6	0.17	0.17	0.00	0.00	0.00	0.00
.G--------------------------------------------------------------------------------------------------------------------------------------------	18	3	0.33	0.33	0.00	0.00	0.00	0.00
GC--------------------------------------------------------------------------------------------------------------------------------------------	19	5	0.20	0.20	0.00	0.00	0.00	0.00
.G--------------------------------------------------------------------------------------------------------------------------------------------	23	22	0.05	0.05	0.00	0.00	0.00	0.00

None

droWil1 - 27 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_180777:148015-148154 +

52.03

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGT---------GTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT-GTGTGTAGCACTTC--CGTTCCATTTACAACAAACACAAAGAAGAACAATATCAGCTCCCTTTTTTTTTTTTGTT--ATTTTCATTT------TTTTCTATGCAG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................TGTGTGCGTCTGTGTGTGTGTG...........................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
....TGTGTGCGTCTGTGTGTGTGTG.............................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
....................TGTGTGCGTCTGTGTGTGTGTG.............................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
..........TGTGTGCGTCTGTGTGTGTGTG.......................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
............TGTGTGCGTCTGTGTGTGTGTG.....................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
........................TGTGTGCGTCTGTGTGTGTGT-G........................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
........TGTGTGCGTCTGTGTGTGTGTG.........................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
................TGTGTGCGTCTGTGTGTGTGTG.................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
..........................TGTGTGCGTCTGTGTGTGT-GTG......................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
..................TGTGTGCGTCTGTGTGTGTGTG...............................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
......TGTGTGCGTCTGTGTGTGTGTG...........................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
..............TGTGTGCGTCTGTGTGTGTGTG...................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
............................TGTGTGCGTCTGTGTGT-GTGTG....................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
...............GTGTGCGTCTGTGTGTGTGTGT..................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
...........................GTGTGCGTCTGTGTGTGT-GTGT.....................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.........................GTGTGCGTCTGTGTGTGTGT-GT.......................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
...GTGTGCGTCTGTGTGTGTGTGT..............................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.......GTGTGCGTCTGTGTGTGTGTGT..........................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
...........GTGTGCGTCTGTGTGTGTGTGT......................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.......................GTGTGCGTCTGTGTGTGTGTGT-.........................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.....................GTGTGCGTCTGTGTGTGTGTGT............................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.............................GTGTGCGTCTGTGTGT-GTGTGT...................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.....GTGTGCGTCTGTGTGTGTGTGT............................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.............GTGTGCGTCTGTGTGTGTGTGT....................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.........GTGTGCGTCTGTGTGTGTGTGT........................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
...................GTGTGCGTCTGTGTGTGTGTGT..............................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.................GTGTGCGTCTGTGTGTGTGTGT................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.....................GTGTGTGTGTGTGTGTGTGTGTG...........................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
...GTGTGTGTGTGTGTGTGTGTGTG.............................................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
.................GTGTGTGTGTGTGTGTGTGTGTG...............................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
.......GTGTGTGTGTGTGTGTGTGTGTG.........................................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
.......................GTGTGTGTGTGTGTGTGTGTGT-G........................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
...............GTGTGTGTGTGTGTGTGTGTGTG.................................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
...........GTGTGTGTGTGTGTGTGTGTGTG.....................................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
...........................GTGTGTGTGTGTGTGTGT-GTGTG....................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
.....GTGTGTGTGTGTGTGTGTGTGTG...........................................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
...................GTGTGTGTGTGTGTGTGTGTGTG.............................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
.........................GTGTGTGTGTGTGTGTGTGT-GTG......................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
.............GTGTGTGTGTGTGTGTGTGTGTG...................................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
.........GTGTGTGTGTGTGTGTGTGTGTG.......................................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
...........................GTGTGTGTGTGTGTGTGT-GTGTGTG..................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
...GTGTGTGTGTGTGTGTGTGTGTGTG...........................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
......TGTGTGTGTGTGTGTGTGTGTGTGTG.......................................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
..........TGTGTGTGTGTGTGTGTGTGTGTGTG...................................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
..................TGTGTGTGTGTGTGTGTGTGTGTGTG...........................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
.................GTGTGTGTGTGTGTGTGTGTGTGTG.............................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
.......GTGTGTGTGTGTGTGTGTGTGTGTG.......................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
TGTGTGTGTGTGTGTGTGTGTGTGTG.............................................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
........................TGTGTGTGTGTGTGTGTGTGT-GTGTG....................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
............TGTGTGTGTGTGTGTGTGTGTGTGTG.................................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
................TGTGTGTGTGTGTGTGTGTGTGTGTG.............................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
...................GTGTGTGTGTGTGTGTGTGTGTGTG...........................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
.........................GTGTGTGTGTGTGTGTGTGT-GTGTG....................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
....TGTGTGTGTGTGTGTGTGTGTGTGTG.........................................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
.........GTGTGTGTGTGTGTGTGTGTGTGTG.....................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
....................TGTGTGTGTGTGTGTGTGTGTGTGT-G........................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
.....................GTGTGTGTGTGTGTGTGTGTGTGT-G........................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
..........................TGTGTGTGTGTGTGTGTGT-GTGTGTG..................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
...............GTGTGTGTGTGTGTGTGTGTGTGTG...............................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
.GTGTGTGTGTGTGTGTGTGTGTGTG.............................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
.....GTGTGTGTGTGTGTGTGTGTGTGTG.........................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
..............TGTGTGTGTGTGTGTGTGTGTGTGTG...............................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
..TGTGTGTGTGTGTGTGTGTGTGTGTG...........................................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
...........GTGTGTGTGTGTGTGTGTGTGTGTG...................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
.......................GTGTGTGTGTGTGTGTGTGTGT-GTG......................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
.............GTGTGTGTGTGTGTGTGTGTGTGTG.................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
......................TGTGTGTGTGTGTGTGTGTGTGT-GTG......................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
........TGTGTGTGTGTGTGTGTGTGTGTGTG.....................................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
............TGTGTGTGTGTGTGTGTGTGTG.....................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
........TGTGTGTGTGTGTGTGTGTGTG.........................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
......................TGTGTGTGTGTGTGTGTGTGTG...........................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
........................TGTGTGTGTGTGTGTGTGTGT-G........................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
..........TGTGTGTGTGTGTGTGTGTGTG.......................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
..................TGTGTGTGTGTGTGTGTGTGTG...............................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
..............TGTGTGTGTGTGTGTGTGTGTG...................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
....TGTGTGTGTGTGTGTGTGTGTG.............................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
....................TGTGTGTGTGTGTGTGTGTGTG.............................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
............................TGTGTGTGTGTGTGTGT-GTGTG....................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
................TGTGTGTGTGTGTGTGTGTGTG.................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
..........................TGTGTGTGTGTGTGTGTGT-GTG......................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
......TGTGTGTGTGTGTGTGTGTGTG...........................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
................................TGTGTGTGTGTGT-TTGTGCAGCA...............................................................................................	23	1	12.00	0.00	0.00	12.00	0.00
..................TGTGTGTGTGTGTGTGTGTGT................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
......................TGTGTGTGTGTGTGTGTGTGT............................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
............TGTGTGTGTGTGTGTGTGTGT......................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
............................TGTGTGTGTGTGTGTGT-GTGT.....................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
..............................TGTGTGTGTGTGTGT-GTGTGT...................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
................TGTGTGTGTGTGTGTGTGTGT..................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
....................TGTGTGTGTGTGTGTGTGTGT..............................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
........................TGTGTGTGTGTGTGTGTGTGT-.........................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
......TGTGTGTGTGTGTGTGTGTGT............................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
..........................TGTGTGTGTGTGTGTGTGT-GT.......................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
....TGTGTGTGTGTGTGTGTGTGT..............................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
........TGTGTGTGTGTGTGTGTGTGT..........................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
..............TGTGTGTGTGTGTGTGTGTGT....................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
..........TGTGTGTGTGTGTGTGTGTGT........................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
..........TGTGTATGTGTGTGTGTGTGTG.......................................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
............................TGTGTATGTGTGTGTGT-GTGTG....................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
................TGTGTATGTGTGTGTGTGTGTG.................................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
....................TGTGTATGTGTGTGTGTGTGTG.............................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
......TGTGTATGTGTGTGTGTGTGTG...........................................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00

scaffold_181096:5969219-5969357 +

46.92

GG---CGCGCACTGGTGTGTGTGTGTGAGTG----------TGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTT------------------------AACAGCAGCAAAAACGTGTATAATTTAC-CTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GCAAGAGAGCGACAGTGAGCGAGTGAGAGGGATAACACACCTGTGTCGATTAA-------CCT-----------------CACCACCCAGAAAATACCAAAAAAAAAAAAAACAAAAAACACCGAAAATTTACAATGTTGTTTATGC--------------TTGT---AAATTTGCATAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................................................................................AAAAAAAAAGAACAGAAA..............................................................	18	51	0.06	0.00	0.06	0.00	0.00

scaffold_181130:13711504-13711663 +

45.54

GGCGCGCACTG-GTGTGTGTGTGTGAGTGTGGGTG-GAAAATCGGATTTCGTAAAAC-GCATTTAATTGTTAACAG--C--------------------AGC-AAAAACGTGTAT--AATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATC-AAATTGC--ACAA CACTCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGAGTGTCCGTGTTCGTGT--CTGC-TTTATTTAATAAGAGACCATCAGAAAAAATAACAAAAGTGCAAAAAGCGAGTGTGAAAAATAATTAATTGTTTTGCTTC-------CAG----AAATAAAAACTGCAGGCAG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.........TGTGTGCGTCTGTGTGTGTGTG..............................................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
.......TGTGTGCGTCTGTGTGTGTGTG................................................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
.............TGTGTGCGTCTGTGTGTGTGTG..........................................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
...........TGTGTGCGTCTGTGTGTGTGTG............................................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
............GTGTGCGTCTGTGTGTGTGTGT...........................................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
........GTGTGCGTCTGTGTGTGTGTGT...............................................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
..........GTGTGCGTCTGTGTGTGTGTGT.............................................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
..........GTGTGTGTGTGTGTGTGTGTGTG............................................................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
............GTGTGTGTGTGTGTGTGTGTGTG..........................................................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
........GTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
.........TGTGTGTGTGTGTGTGTGTGTGTGTG..........................................................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
........GTGTGTGTGTGTGTGTGTGTGTGTG............................................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
..........GTGTGTGTGTGTGTGTGTGTGTGTG..........................................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
.......TGTGTGTGTGTGTGTGTGTGTGTGTG............................................................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
............GTGTGTGTGTGTGTGTGTGTGTGTG........................................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
...........TGTGTGTGTGTGTGTGTGTGTGTGTG........................................................................................................................................	26	44	0.32	0.00	0.02	0.30	0.00
......GTGTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
...........TGTGTGTGTGTGTGTGTGTGTG............................................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
.............TGTGTGTGTGTGTGTGTGTGTG..........................................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
.......TGTGTGTGTGTGTGTGTGTGTG................................................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
.........TGTGTGTGTGTGTGTGTGTGTG..............................................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
.............TGTGTGTGTGTGTGTGTGTGT...........................................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
...........TGTGTGTGTGTGTGTGTGTGT.............................................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
.......TGTGTGTGTGTGTGTGTGTGT.................................................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
.........TGTGTGTGTGTGTGTGTGTGT...............................................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
.........TGTGTATGTGTGTGTGTGTGTG..............................................................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
.............TGTGTATGTGTGTGTGTGTGTG..........................................................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
.......TGTGTATGTGTGTGTGTGTGTG................................................................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
...........TGTGTATGTGTGTGTGTGTGTG............................................................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
.........TGTGTGTGTGTGTGTGTGTGTGTGC...........................................................................................................................................	25	33	0.24	0.00	0.00	0.24	0.00
............GTGTGCGTGTGTGTGTGT...............................................................................................................................................	18	90	0.09	0.00	0.09	0.00	0.00
...........TGTGTGTGTGTGTGTGTGTGTGTGC.........................................................................................................................................	25	33	0.24	0.00	0.00	0.24	0.00
.......TGTGTGTGTGTGTGTGTGTGTGTGC.............................................................................................................................................	25	33	0.24	0.00	0.00	0.24	0.00
..........GTGTGTGTGTGTGTGTGTGTGTGC...........................................................................................................................................	24	35	0.20	0.00	0.03	0.17	0.00
........GTGTGTGTGTGTGTGTGTGTG................................................................................................................................................	21	45	0.16	0.00	0.02	0.13	0.00
............GTGTGTGTGTGTGTGTGTGTGTGC.........................................................................................................................................	24	35	0.20	0.00	0.03	0.17	0.00
.......TGTGTGTGTGTGTGTGTGTGTGTGCG............................................................................................................................................	26	24	0.29	0.00	0.00	0.29	0.00
........GTGTGTGTGTGTGTGTGTGTGTGC.............................................................................................................................................	24	35	0.20	0.00	0.03	0.17	0.00
...........TGTGTGTGTGTGTGTGTGTGTGTGCG........................................................................................................................................	26	24	0.29	0.00	0.00	0.29	0.00
............GTGTGTGTGTGTGTGTGTGTG............................................................................................................................................	21	45	0.16	0.00	0.02	0.13	0.00
..........GTGTGTGTGTGTGTGTGTGTG..............................................................................................................................................	21	45	0.16	0.00	0.02	0.13	0.00
..............GTGTGTGTGTGTGTGTGTGTG..........................................................................................................................................	21	45	0.16	0.00	0.02	0.13	0.00
.........TGTGTGTGTGTGTGTGTGTGTGTGCG..........................................................................................................................................	26	24	0.29	0.00	0.00	0.29	0.00
.........TGTGTGCGTCTGTGTGTGTGTGT.............................................................................................................................................	23	42	0.14	0.00	0.12	0.02	0.00
...........TGTGTGCGTCTGTGTGTGTGTGT...........................................................................................................................................	23	42	0.14	0.00	0.12	0.02	0.00
.......TGTGTGCGTCTGTGTGTGTGTGT...............................................................................................................................................	23	42	0.14	0.00	0.12	0.02	0.00
.AGTAACTGTGTGTGTGTG..........................................................................................................................................................	18	5	1.20	0.00	1.00	0.20	0.00
.AGTAACTGTGTGTGTGTGT.........................................................................................................................................................	19	5	1.00	0.20	0.80	0.00	0.00
.........TGTGTGTGTGTGAGTGTGTGTGTGTG..........................................................................................................................................	26	47	0.09	0.00	0.00	0.09	0.00
..........ATGTGTGTGTGTGTGTGTGTGTGTGC.........................................................................................................................................	26	38	0.11	0.00	0.00	0.11	0.00
......ATGTGTGTGTGTGTGTGTGTGTGTGC.............................................................................................................................................	26	38	0.11	0.00	0.00	0.11	0.00
..........TTGTGTGTGTGTGTGTGTGTGTGTGC.........................................................................................................................................	26	39	0.10	0.00	0.00	0.10	0.00
........GTGTGTGTGTGTGTGTGTGTGT...............................................................................................................................................	22	38	0.11	0.03	0.03	0.05	0.00
........TTGTGTGTGTGTGTGTGTGTGTGTGC...........................................................................................................................................	26	39	0.10	0.00	0.00	0.10	0.00
.......TGTGTGTGTGTGAGTGTGTGTGTGTG............................................................................................................................................	26	47	0.09	0.00	0.00	0.09	0.00
.....ACTGTGTGGGTGTGTGTG......................................................................................................................................................	18	20	0.20	0.00	0.10	0.10	0.00
........ATGTGTGTGTGTGTGTGTGTGTGTGC...........................................................................................................................................	26	38	0.11	0.00	0.00	0.11	0.00
...........TGTGTGTGTGTGAGTGTGTGTGTGTG........................................................................................................................................	26	47	0.09	0.00	0.00	0.09	0.00
..........GTGTGTGTGTGTGTGTGTGTGT.............................................................................................................................................	22	38	0.11	0.03	0.03	0.05	0.00
............GTGTGTGTGTGTGTGTGTGTGT...........................................................................................................................................	22	38	0.11	0.03	0.03	0.05	0.00
......TTGTGTGTGTGTGTGTGTGTGTGTGC.............................................................................................................................................	26	39	0.10	0.00	0.00	0.10	0.00
........GAGTGTGTGTGTGTGTGTGTGTGAG............................................................................................................................................	25	33	0.09	0.00	0.00	0.09	0.00
.................TATGTGTGTGTGTGGGTGCG........................................................................................................................................	20	9	0.33	0.11	0.00	0.22	0.00
.......TGTGTGTGTGTGTGTGTGTGTGC...............................................................................................................................................	23	44	0.07	0.00	0.02	0.05	0.00
..........GTGTGTGTGTGTGTGTGT.................................................................................................................................................	18	77	0.04	0.04	0.00	0.00	0.00
........GTGTGTGTGTGTGTGTGTGTGC...............................................................................................................................................	22	49	0.06	0.00	0.04	0.02	0.00
..............GTGTGTGTGTGTGTGTGTGTGC.........................................................................................................................................	22	49	0.06	0.00	0.04	0.02	0.00
..............GAGTGTGTGTGTGTGTGTGTGTGAG......................................................................................................................................	25	33	0.09	0.00	0.00	0.09	0.00
..........GTGTGTGTGTGTGTGTGTGTGTGCG..........................................................................................................................................	25	26	0.12	0.00	0.00	0.12	0.00
..........GTGTGCGTGTGTGTGTGTGTGTGCGC.........................................................................................................................................	26	4	0.75	0.00	0.75	0.00	0.00
........GTGTGTGTGTGTGTGTGTGTGTGCG............................................................................................................................................	25	26	0.12	0.00	0.00	0.12	0.00
........ATGTGTGTGTGTGTGTGTGTGTGTG............................................................................................................................................	25	36	0.08	0.06	0.00	0.03	0.00
...................TGTGTGTGTGTGTGTGCA........................................................................................................................................	18	24	0.13	0.00	0.04	0.08	0.00
............GTGTGTGTGTGTGTGTGTGTGTGCG........................................................................................................................................	25	26	0.12	0.00	0.00	0.12	0.00
..........ATGTGTGTGTGTGTGTGTGTGTGTG..........................................................................................................................................	25	36	0.08	0.06	0.00	0.03	0.00
...TCGCTGTGTGTGCGTGTGT.......................................................................................................................................................	19	6	0.50	0.00	0.50	0.00	0.00
............GAGTGTGTGTGTGTGTGTGTGTGAG........................................................................................................................................	25	33	0.09	0.00	0.00	0.09	0.00
...........TGTGTGTGTGTGTGTGTGTGTGC...........................................................................................................................................	23	44	0.07	0.00	0.02	0.05	0.00
..........GTGTGTGTGTGTGTGTGTGTGC.............................................................................................................................................	22	49	0.06	0.00	0.04	0.02	0.00
..........GAGTGTGTGTGTGTGTGTGTGTGAG..........................................................................................................................................	25	33	0.09	0.00	0.00	0.09	0.00
...TCGCTGTGTGTGCGTGTG........................................................................................................................................................	18	7	0.43	0.00	0.43	0.00	0.00
.AGTAACTGTGTGTGTGTGTGT.......................................................................................................................................................	21	4	0.75	0.00	0.50	0.25	0.00
.................TGTGTGTATGTGTGTGTGCA........................................................................................................................................	20	26	0.12	0.00	0.12	0.00	0.00
.............TATGTGTGTGTGTGTGTGTGTGC.........................................................................................................................................	23	61	0.05	0.00	0.00	0.05	0.00
............GTGTGCGTGTGTGTGTCTGTGTG..........................................................................................................................................	23	36	0.08	0.00	0.08	0.00	0.00
............GTGTGCGTGTGTGTGTGTGTGTGCGC.......................................................................................................................................	26	4	0.75	0.00	0.75	0.00	0.00
..........GTGTGCGTGTGTGTGTCTGTGTG............................................................................................................................................	23	36	0.08	0.00	0.08	0.00	0.00
.........TGTGTGTGTGTGTGTGTGTGTGC.............................................................................................................................................	23	44	0.07	0.00	0.02	0.05	0.00
.............TGTGTGTGTGTGTGTGTGTGTGC.........................................................................................................................................	23	44	0.07	0.00	0.02	0.05	0.00
...............TGTGTGTGTGTGTGTGTGTGC.........................................................................................................................................	21	62	0.05	0.00	0.00	0.05	0.00
......ATGTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................................................	25	36	0.08	0.06	0.00	0.03	0.00
......................................GTGTACGTGTTxGTGT--CTGC-T...............................................................................................................	20	1	3.00	3.00	0.00	0.00	0.00
............GTGTGTGTGTGTGTGTGTGTGC...........................................................................................................................................	22	49	0.06	0.00	0.04	0.02	0.00
........GTGTGCGTGTGTGTGTCTGTGTG..............................................................................................................................................	23	36	0.08	0.00	0.08	0.00	0.00

128

scaffold_181130:2232290-2232437 -

44.1

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGA--------------------------------------------TTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GCCGTGCGTCTGTGTACATGTGTGTGTGTGTGCTATCAATTTGTTCTTGTATGTGGGATAT------------------------TTATAGTCTACTTAAAGGATTCCGCCTCAAAGCAATTTCGAACTGGTAGACCCCACGGAT--------------TTTGATGCCAGCAAACGCCATCTGGAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........TGCGTATATGTGTGTGTGTG............................................................................................................................................................	20	12	0.42	0.00	0.42	0.00	0.00
..........TGCGTATATGTGTGTGTGTGT...........................................................................................................................................................	21	12	0.25	0.00	0.25	0.00	0.00
.......CTCTGTGTGCATGTGTGT.................................................................................................................................................................	18	9	0.22	0.00	0.22	0.00	0.00
..............TCCCTGTGTGTGTGTGTG..........................................................................................................................................................	18	41	0.05	0.00	0.05	0.00	0.00
...........ATGTAGATGTGTGTGTGTGTG..........................................................................................................................................................	21	4	0.50	0.25	0.25	0.00	0.00
.........CTGTGTCCATGTGGGTGTGTGT...........................................................................................................................................................	22	2	1.00	1.00	0.00	0.00	0.00
..............TATATGTGTGTGTGTGTG..........................................................................................................................................................	18	26	0.08	0.00	0.04	0.04	0.00
.............GTCCATGTGGGTGTGTGTG..........................................................................................................................................................	19	5	0.40	0.40	0.00	0.00	0.00
..........TGCGTATATGTGTGTGTG..............................................................................................................................................................	18	18	0.11	0.00	0.11	0.00	0.00
...........GTATAGATGTGTGTGTGT.............................................................................................................................................................	18	12	0.17	0.00	0.17	0.00	0.00
...........GTTTTCATGTGTGTGTGTGT...........................................................................................................................................................	20	5	0.40	0.00	0.40	0.00	0.00
.............GTATATGTGTGTGTGTGTA..........................................................................................................................................................	19	40	0.03	0.00	0.03	0.00	0.00
...............ACATGTCTGTGTGTGTGT.........................................................................................................................................................	18	17	0.06	0.00	0.06	0.00	0.00
............TGTAGATGTGTGTGTGTGTGT.........................................................................................................................................................	21	16	0.06	0.06	0.00	0.00	0.00
...........CTGTATATGTGTGTGTGTGT...........................................................................................................................................................	20	21	0.05	0.00	0.05	0.00	0.00
.................ATGTGTGTGTGTGTGCTTA......................................................................................................................................................	19	6	0.17	0.00	0.17	0.00	0.00
...........GTCTACAAGTGTGTGTGTGT...........................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...........GTGCTCATGTGTGTGTGTG............................................................................................................................................................	19	3	0.33	0.33	0.00	0.00	0.00
.............GTGCATGTGTCTGTGTGTGC.........................................................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
...........ATGTATATGTGTGTGTGTGT...........................................................................................................................................................	20	37	0.03	0.03	0.00	0.00	0.00
.............GTCTATGTGTGTGTGTGTGC.........................................................................................................................................................	20	16	0.06	0.00	0.06	0.00	0.00
............TGTGCAAGTGTGTGTGTGTG..........................................................................................................................................................	20	10	0.10	0.00	0.00	0.10	0.00
.............GTGCATGTGTTTGTGTGT...........................................................................................................................................................	18	12	0.08	0.00	0.08	0.00	0.00
.........TTTTGTACATGTGTGTGTGT.............................................................................................................................................................	20	3	0.33	0.00	0.33	0.00	0.00
............TGTACAGGTCTGTGTGTGT...........................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...........ATGTAGATGTGTGTGTGTG............................................................................................................................................................	19	6	0.17	0.17	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGCTA.......................................................................................................................................................	19	31	0.03	0.00	0.03	0.00	0.00
............TGTCCATGTGTGTGTGTGT...........................................................................................................................................................	19	14	0.07	0.07	0.00	0.00	0.00
......................................ATTTGTTTTTGTGTGTGGG.................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...............ACATGTGTGTGTGTGTGTG........................................................................................................................................................	19	44	0.02	0.00	0.00	0.02	0.00
..........TGCGTATATGTGTGTGTGT.............................................................................................................................................................	19	15	0.07	0.00	0.07	0.00	0.00
.......CTCTGTGTGCATGTGTGTGTGT.............................................................................................................................................................	22	4	0.25	0.25	0.00	0.00	0.00
.......CTTTGTGTACATGTGTGTGTGTGT...........................................................................................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
.............GTACGTGAGTGTGTGTGTG..........................................................................................................................................................	19	12	0.08	0.08	0.00	0.00	0.00
.........CTGTGTGCATGTGTGTGTGT.............................................................................................................................................................	20	12	0.08	0.00	0.08	0.00	0.00
...........GTGTAAATGCGTGTGTGT.............................................................................................................................................................	18	4	0.25	0.00	0.25	0.00	0.00
..............TATATGTGTGTGTGTGTCC.........................................................................................................................................................	19	7	0.14	0.00	0.00	0.14	0.00
...........GTGTGCATGTGTGTGTGCG............................................................................................................................................................	19	13	0.08	0.00	0.08	0.00	0.00
...........ATGTAGATGTGTGTGTGTGT...........................................................................................................................................................	20	5	0.20	0.00	0.00	0.20	0.00
.............GTACATGGGTGTGTGTGTGT.........................................................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
............TGTACATGTGTGTGTGTGTG..........................................................................................................................................................	20	3	0.33	0.00	0.00	0.33	0.00
.............GTACGTGTATGTGTGTGT...........................................................................................................................................................	18	22	0.05	0.05	0.00	0.00	0.00
.................TTGTGTGTGTGTGTGCTG.......................................................................................................................................................	18	6	0.17	0.00	0.00	0.17	0.00
.................GTGTGTGTGTGTGTGTTATCA....................................................................................................................................................	21	2	0.50	0.00	0.00	0.50	0.00
.........CTGTGTATATGTGTGTTTGT.............................................................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
............TGTGCATGTGTTTGTGTGT...........................................................................................................................................................	19	9	0.11	0.00	0.11	0.00	0.00
............TGTATATGTGTGTGTGTC............................................................................................................................................................	18	27	0.04	0.04	0.00	0.00	0.00
..............TAAATGTGTGTGTGTGTA..........................................................................................................................................................	18	29	0.03	0.00	0.03	0.00	0.00
..........TGTGTGCATGTGTGTGTGTA............................................................................................................................................................	20	15	0.07	0.00	0.00	0.07	0.00
............TGTAACTGTGTGTGTGTGT...........................................................................................................................................................	19	15	0.07	0.07	0.00	0.00	0.00
..........TATGTAGATGTGTGTGTGTG............................................................................................................................................................	20	4	0.25	0.00	0.00	0.25	0.00
............................................................................................CTGCTTCAAGGATTCCGCC...........................................................................	19	1	1.00	0.00	0.00	1.00	0.00
............TGTATATCTGTGTGTGTGT...........................................................................................................................................................	19	21	0.05	0.05	0.00	0.00	0.00
............TGAATATGTGTGTGTGTGT...........................................................................................................................................................	19	22	0.05	0.05	0.00	0.00	0.00
.......CTCTGTGTGCATGTGTGTGT...............................................................................................................................................................	20	6	0.17	0.00	0.17	0.00	0.00
...............CTATGTGTGTGTGTGTGC.........................................................................................................................................................	18	36	0.03	0.00	0.03	0.00	0.00
..............GACATGTGTGTGTGTGTGT.........................................................................................................................................................	19	14	0.07	0.00	0.07	0.00	0.00
.............CGACATGTGTGTGTGTGT...........................................................................................................................................................	18	3	0.33	0.00	0.33	0.00	0.00
........TCTGTGTGCATGTGTGTGTGT.............................................................................................................................................................	21	8	0.13	0.13	0.00	0.00	0.00
...........ATGTAGATGTGTGTGTGT.............................................................................................................................................................	18	9	0.11	0.00	0.11	0.00	0.00
............TGTAGATGTGTGTGTGTGTG..........................................................................................................................................................	20	17	0.06	0.00	0.06	0.00	0.00
............TGTAAATGTGTGTGTGTGT...........................................................................................................................................................	19	25	0.04	0.00	0.00	0.04	0.00
................TATGTGTGTGTGTGTGCA........................................................................................................................................................	18	46	0.02	0.00	0.02	0.00	0.00
.........CTGTGTGCATGTGTGTGTG..............................................................................................................................................................	19	15	0.07	0.00	0.07	0.00	0.00
............TGCATATGTGTGTGTGTGTG..........................................................................................................................................................	20	17	0.06	0.00	0.00	0.06	0.00
.............GTATATGTGTGTGTGTGT...........................................................................................................................................................	18	150	0.01	0.01	0.00	0.00	0.00

scaffold_180949:3066590-3066740 +

43.59

GGCGCGCACTGG-------TGTGTGT--------GTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTT--TCTACATCTCACTTACAGTTAGTA--------------ATCAAATTGCACAA GTCAG-CGTTTATGACAAATGTAAGCTTCTCCTAAAATCAATTTACATGAAAAAAGGGAAATC-TAAAACATAATTTATAGCA-----CACCAGCGGCGTCTATCTCTTT--------CTCTCT-------GCCTGCAGTAACCGTCCCAAATAATTTTCTGCAATTGCATAG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................CAAAAGGGAAATC-TATAACA......................................................................................................	20	1	2.00	2.00	0.00	0.00	0.00
................................................GAAAAAAGGGAAAAC-AAAA.........................................................................................................	19	3	0.33	0.00	0.33	0.00	0.00
............................................................................................................................................................................G	19	2	0.50	0.00	0.50	0.00	0.00
......................................................................................................ATCTCTTT--------CTCTCG-------GCGTGC....................................	20	1	1.00	0.00	0.00	1.00	0.00

scaffold_181089:9722358-9722505 +

39.07

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA--------------------------------------------------------------------------------------- -----------------------------------------------------------------------------AAAAGGGCATATAAGATAGC--ACAGTTCTACAACCAACTGGCAACT---AAGAAAATCGCAAAAGTATTTTTCATTAAATAGAAGAAATAAAAGTGTGGGAGTTGAGGACAAGGATGGGTGAAATAAACAAAAGGTTAAGAAATATTAATA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................................................................................................................................TACAGTAAATAGAAGAAA...............................................................	18	2	0.50	0.00	0.50	0.00	0.00
...........................................................................................................................................................................................................GAGCAAAAGGTTAAGAAA........	18	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................................................................CAGTAAATAGAAGAAAAAAA...........................................................	20	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................................................................................AAACAAAAGATAAAGAAA........	18	5	0.20	0.00	0.20	0.00	0.00
..................................................................................................................AATGGCAACA---AAGAAAAT..............................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
............................................................................................................................................................................................................AGCAAAAGGTTAAGAAAA.......	18	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................................................TAAATTGAAGAAAAAAAA..........................................................	18	7	0.14	0.00	0.14	0.00	0.00
................................................................................................................................................................................................ATGGGTTAAAxAAACAAAA..................	18	4	0.25	0.00	0.25	0.00	0.00
........................................................................................................................................................TGAAAGAGAAGAAATAAA...........................................................	18	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................................................GTTAAATTGAAGAAATAAAA..........................................................	20	1	1.00	1.00	0.00	0.00	0.00

scaffold_180698:5702024-5702183 -

37.5

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGG-ATTTCGTAAAACGC----ATTTA------ATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA----------------------------------------------------- GGAAGACGTTGGCGGT-------------GATGAGATCATCGATATATCACCAATTGAAGCCATGTCATCATTACTAAGGCCAGCTGCAAAAG---------------------------------TTTACAAAGAACAAACAAAATGCACATTTCAAATTCAATTTTCCATCCAAGTAAGTGAAGAAATGTGTGTGTGTGTGTGT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................................................................................................................................................ATATGTGTGTGTGTGTGTG.	19	26	0.19	0.12	0.00	0.08	0.00
..........................................................................................................................................................................................ATATGTGTGTGTGTGTGTGT	20	21	0.19	0.00	0.14	0.00	0.05
..........................................................................................................................................................................................AATTGTGTGTGCGTGTGT..	18	10	0.40	0.00	0.40	0.00	0.00
...........................................................................................................................................................................................ACTGTGTGGGTGTGTGTG.	18	20	0.20	0.00	0.10	0.10	0.00
.......................................................................................................................................................................................AACAGATGTGTGTGTGTG.....	18	4	0.75	0.00	0.00	0.75	0.00

scaffold_181096:2687403-2687573 +

35.35

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAA--TTGTTAACAGCAGCAAAAAC------------------------------------GTGTATAATTTACCTGATTTTTCTACATCTCACTTACA---GTTAGTAATCAAATTGCACAA AGTTGGCAATA-TATATGCATACAAAA-TAAGTA---AAACGAATATATAAAACCAAAACGAAAAGCGCTAAAAAA----AAAACGAAAAGAAAAACGCTGCAAAGGGCAAAAAGGCAAACGGGC---AAAAAGGATATAAATATATATTTCAAATAGAAGCGTTATCACGCAAATCTGATTA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................................AAAA----AAAAAGAACAGAAA.........................................................................................	18	51	0.06	0.00	0.06	0.00	0.00
.......................................................................AAAAA----AAAAAGAACAGAA..........................................................................................	18	49	0.04	0.00	0.04	0.00	0.00
........................................................................AAAA----ACAAGGAAAAGAAAAA.......................................................................................	20	5	0.20	0.00	0.20	0.00	0.00
......................................................................AAAAAA----AGAACGAAAAAA...........................................................................................	18	30	0.03	0.00	0.03	0.00	0.00
...........................................ATAAAGAAAACCAAAACGA.........................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
......................................................................AAAAAA----AAAAAGAAAAGAACA........................................................................................	21	16	0.06	0.00	0.06	0.00	0.00
......................................................................AAAAAA----AAAACAAAAAGAAAAC.......................................................................................	22	18	0.06	0.00	0.06	0.00	0.00
........................................................................AAAA----AAAACGAAGAGAAAAAA......................................................................................	21	5	0.20	0.00	0.20	0.00	0.00
......................................................................AAAAAG----AACACGAAAAGAAAAA.......................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................AAAA----AAAACGAAAAAAAA.........................................................................................	18	217	0.00	0.00	0.00	0.00	0.00
........................................................................AAAA----AAAACGAAAAGAAGA........................................................................................	19	9	0.11	0.00	0.11	0.00	0.00
......................................................................AAAAAA----AAAGAGAAAAGA...........................................................................................	18	44	0.02	0.00	0.02	0.00	0.00
.........................................................................AAA----AAAAAGAAAAGAAAA........................................................................................	18	14	0.07	0.00	0.07	0.00	0.00
.........................................................................AAA----AAAAGGAAAAGAAAAA.......................................................................................	19	20	0.05	0.05	0.00	0.00	0.00
......................................................................AAAAAA----AAAAGGAAAATAAA.........................................................................................	20	14	0.07	0.00	0.07	0.00	0.00
........................................................................AAAA----AAAAAGACAAGAAA.........................................................................................	18	41	0.02	0.00	0.02	0.00	0.00
.......................................................................AAAAA----AAAATGAAAAGGA..........................................................................................	18	9	0.11	0.00	0.11	0.00	0.00
......................................................................AAACAA----AAAAAGAAAAGAAA.........................................................................................	20	33	0.03	0.00	0.03	0.00	0.00
........................................................................AAAA----AAAAGCAAAAGAAAA........................................................................................	19	28	0.04	0.00	0.04	0.00	0.00
....................................................................CTAAAAAA----AAATCGTAAAG............................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
............................................................GATAGGCGCTAAAAAA----AA.....................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
........................................................................AAAA----GAAACGAAAAAAAA.........................................................................................	18	32	0.03	0.00	0.03	0.00	0.00
.........................................................................AAG----AAAAAGAAAAGAAAA........................................................................................	18	39	0.03	0.00	0.03	0.00	0.00
........................................................................AAAA----AAAAAGAAAAGAAAA........................................................................................	19	11	0.09	0.00	0.09	0.00	0.00
.........................................................................AAA----ACAAAGAAAAGAAAAA.......................................................................................	19	29	0.03	0.00	0.03	0.00	0.00
.........................................................................AAA----AGAAAGAAAAGAAAA........................................................................................	18	42	0.02	0.00	0.02	0.00	0.00
......................................................................AAAAAA----AAAAAGAATAGAAA.........................................................................................	20	19	0.05	0.00	0.05	0.00	0.00
...............................................ATAAAACCAAACCGAAAAGTG...................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................................................AAAAAAAA----AAAACGAAAAGAAAAA.......................................................................................	24	3	0.33	0.00	0.33	0.00	0.00
......................................................................CAAAAA----AAAAAGAAAAGAA..........................................................................................	19	47	0.02	0.00	0.02	0.00	0.00
.........................................................................AAA----AAAAAGAAAAGAAAAA.......................................................................................	19	9	0.11	0.00	0.11	0.00	0.00
..........................................................................AA----AAAAAGAGAAGAAAAA.......................................................................................	18	37	0.03	0.00	0.03	0.00	0.00
.......................................................................AAAAA----AAAAGGAAAGGAAAAA.......................................................................................	21	4	0.25	0.00	0.25	0.00	0.00
........................................................................AAAA----AAAACAAAAAGAAAGA.......................................................................................	20	24	0.04	0.00	0.04	0.00	0.00
........................................................................AAAA----AACAAGAAAAGAAAA........................................................................................	19	22	0.05	0.00	0.05	0.00	0.00
.......................................................................AAAAA----AAAACGAAAAAAAAAAG......................................................................................	22	10	0.10	0.00	0.10	0.00	0.00
.........................................................................GAA----AAAAAGAAAAGAAAAA.......................................................................................	19	27	0.04	0.00	0.04	0.00	0.00
.......................................................................AAAAA----AAAAGGAAAACAAA.........................................................................................	19	36	0.03	0.00	0.03	0.00	0.00
.........................................................................................................................................ATAAAGTTATATTTCAAA............................	18	2	0.50	0.00	0.50	0.00	0.00
......................................................................AAAAAA----AAAAGGAAGAGAAA.........................................................................................	20	11	0.09	0.00	0.09	0.00	0.00
.......................................................................AAAAA----AAAAAGAGAAGAAA.........................................................................................	19	31	0.03	0.03	0.00	0.00	0.00
........................................................................AAAC----AAAACGAAAAAAAAAA.......................................................................................	20	41	0.02	0.00	0.02	0.00	0.00
........................................................................AAAA----AAGACGAAAAAAAAA........................................................................................	19	22	0.05	0.00	0.05	0.00	0.00
...........................................................................A----AAAAAGAAAAGAACAAC......................................................................................	18	14	0.07	0.00	0.07	0.00	0.00
........................................................................AAAA----AAAAGGACAAGAAA.........................................................................................	18	7	0.14	0.00	0.14	0.00	0.00
........................................................................AAAA----AAAAGGAGAAGAAA.........................................................................................	18	14	0.07	0.00	0.07	0.00	0.00
..............................................TAxAAAGCCAAAACGAACA......................................................................................................................	18	4	0.25	0.00	0.25	0.00	0.00
.....................................................................GAAAAAA----AAAACGAAAAT............................................................................................	18	13	0.08	0.00	0.08	0.00	0.00
........................................................................AAAA----AAAAAGAAAAGAAA.........................................................................................	18	20	0.05	0.00	0.05	0.00	0.00
.........................................................................AAA----AAAAGGAAAAGAAAAAA......................................................................................	20	11	0.09	0.00	0.09	0.00	0.00
........................................................................AAAA----AGAACGAAAACAAA.........................................................................................	18	8	0.13	0.00	0.13	0.00	0.00
..........................................................................AA----AAAAAGAAAAGAAAAA.......................................................................................	18	14	0.07	0.00	0.07	0.00	0.00
.......................................................................AAAAA----AAACCGAAAAAAAA.........................................................................................	19	37	0.03	0.00	0.03	0.00	0.00
........................................................................AAAA----GAAACAAAAAGAAA.........................................................................................	18	45	0.02	0.00	0.02	0.00	0.00
........................................................................AGAA----AAAAAGAAAAGAAA.........................................................................................	18	44	0.02	0.00	0.02	0.00	0.00

scaffold_180702:2554047-2554140 -

33.92

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCT-ACATCTCACTTACAGTTAGTAATCAAATTGCACAA -------------------------------------------------TGGAATGGTTCTAAATGATTATTGAAGCAGAAATTTTCTAAATTTTTTTGTTGCTGGTGAAATTTTTTTTACTGCAATTGTCAACGTGACTGCA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................................................................GTTGCTGCTGAAATTTTTG..........................	19	5	1.20	0.00	1.20	0.00	0.00
.................................................................................................AGTTGCTGCTGAAATTTT............................	18	3	0.67	0.00	0.67	0.00	0.00
..................................................................................................GTTGCTGCTGAAATTTTT...........................	18	5	0.40	0.00	0.40	0.00	0.00
.............................................................................................................................................CA	18	8	0.13	0.00	0.13	0.00	0.00
..............................................................................................TTGTGTTGCTTGTGAAATT..............................	19	2	0.50	0.00	0.50	0.00	0.00
..............................................................................................................................................A	20	14	0.07	0.00	0.07	0.00	0.00
..............................................................................................................................................C	19	51	0.02	0.02	0.00	0.00	0.00
..................................................................................................GTTGCTGCTGAAATTTTTGT.........................	20	4	0.25	0.00	0.25	0.00	0.00
..........................................................................................ATTTTTTTGTGGCTGGGG...................................	18	2	0.50	0.00	0.00	0.00	0.50

116

scaffold_181096:3868057-3868170 -

33.49

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTAC------------------------CTGATTTTTCTACA----------TCTCACTTACAGTTAG--TAATCAAATTGC---ACAA TGCCCAT---------------------------------------------------------TTTTAATA-----------GTGTTTTATTTTTCTTCTTCTCTTTTCCTTTACAGTGCTCATTTTTCTTTTCCCCCCAAACTTCTACTTGCAGTTACCATCATCCAATTAAGCAACAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................................................................................CATTTTCGTTTTCCCCCCA........................................	19	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................................................TTCTACTTGCAGTTACCATCATC..............	23	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................................CCCCCAAACTTCTACTTGCAG.........................	21	1	1.00	0.00	1.00	0.00	0.00

scaffold_181150:1375753-1375830 +

29.76

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTAC-CTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G-------------------------------------------------------TGTTAAATTGCCAT---AAATAATATTGTGTGTGATTTTTGTTGATTGTTTTGCGTGCCGTCTACA-------ATTCAATTGCGTGA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................................ATTGTGTGTAATTTTTTT.............................................	18	4	0.50	0.00	0.50	0.00	0.00
..........................................................................................ATTGTTGTTGATTGTGTT...................................	18	5	0.20	0.00	0.20	0.00	0.00
................................................................................ATTGTGTGTGTTTTTTTTT............................................	19	7	0.14	0.00	0.14	0.00	0.00
..............................................................................ATxTGGTGTGTGATTTTTTT.............................................	19	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................ATTGTTTTCCGTGCCGGCT........................	19	1	1.00	0.00	0.00	0.00	1.00
..............................................................................................TTGTTGATTGTTTTGCGTGCC............................	21	1	1.00	0.00	0.00	1.00	0.00
...................................................................AAT---AAATAATACTGTGTGT......................................................	19	1	1.00	0.00	1.00	0.00	0.00
............................................................................................TTTTGTTGATTGTTTTGCGTG..............................	21	1	1.00	0.00	1.00	0.00	0.00
..............................................................................ATxTGGTGTGTGATTTTTTTT............................................	20	1	1.00	0.00	1.00	0.00	0.00
............................................................................................TTTTGTTGATTGTTTTGCGTGCCGTCTAC......................	29	1	1.00	1.00	0.00	0.00	0.00
....................................................................................TGTGTGATTTTTGTTTAT.........................................	18	4	0.25	0.00	0.25	0.00	0.00

115

scaffold_181096:3867185-3867258 -

28.57

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GCGGCATAA--------------------------------------------------------------------AAGAGCAAACTTTTATTATTTGAAATTTTTTCTTTTTGCTCTGTGCTGCAAGAAAAGTTGTACAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................................................TTTATTAGGTGAAATTTT....................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TTTGCTCTGTGGTGAAAG.............	18	1	1.00	0.00	1.00	0.00	0.00

118

scaffold_181096:4761197-4761457 -

21.99

GGCGCGC-ACTG-----------------------------GTGTGTGTGTGTGAGTGTGGGTGGAAA----------ATCGGATTTCGTAAAACGCATTTAATTG--------------------------------------------------------------------------------------------TTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGT-----AATCAAATTGCACAA AGTGTGCGACTGAGAGCGAGTGAGAAAGAGTGAGAACATGTGTGAGTGTGTGTGAGTGTTTGTGTGAAAGAGAGAAAAAT--TATTTCGTAAAACGCATTTATTAATAAAAATAAATCAAATAAAAACAAAACACATGCAATGGAAAAACAACTAAACAAAATCATCTTTAACTATTTAAAAAAAAAAAAATAATATTTTGAT-----------TGAATTTTGGTTTCTTTTATTTTGTAC-TTTTATTTGCAGTA-GAACAAAAAT---TTTGCACAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................ATGTGTGCGTGTGTGGGAGT..............................................................................................................................................................................................................................	20	1	3.00	0.00	1.00	2.00	0.00
.........................................................GTGTGTGTGAGAGAGAGAA...........................................................................................................................................................................................................	19	10	0.30	0.20	0.10	0.00	0.00
.............................................................................................................................................................................TCTGTAAAAAAAAAAAAA........................................................................................	18	16	0.19	0.00	0.06	0.00	0.13

122

scaffold_181096:6356321-6356360 -

19.29

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA CATACATATTTGTGTGTGTGTGTATGTGTGTGTGGCCAAT------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.......ATGTGTGTGTGTGTGTATGTG..................................................................................................................	21	80	0.10	0.00	0.10	0.00	0.00
..............TGTGCGTATATGTGTGTGTG............................................................................................................	20	9	0.78	0.00	0.78	0.00	0.00
.......ATGTGTGTGTGTGTGTATGTGA.................................................................................................................	22	14	0.50	0.00	0.36	0.14	0.00
...........GTATGTTTGTGTATGTGTG................................................................................................................	19	14	0.50	0.00	0.00	0.50	0.00
...........GTGTGTGTGTGTATATGGGT...............................................................................................................	20	5	1.20	0.00	1.20	0.00	0.00
.....ATATATGTGTGTGTGTGT.......................................................................................................................	18	16	0.38	0.00	0.38	0.00	0.00
..........TGTGGGTGGGTGTATGTGTGT...............................................................................................................	21	3	1.67	0.33	0.67	0.67	0.00
...........GTGTGTGTGTGTATATGG.................................................................................................................	18	23	0.17	0.00	0.17	0.00	0.00
.........TTGTGTGTGTGTGTGTGTGTGTGTGC...........................................................................................................	26	39	0.10	0.00	0.00	0.10	0.00
..........TGTATGTTTGTGTATGTGTG................................................................................................................	20	12	0.25	0.00	0.00	0.25	0.00
................TGTGTGTATGTGTGTGTGCA..........................................................................................................	20	26	0.12	0.00	0.12	0.00	0.00

scaffold_180698:4603281-4603312 -

19.29

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA CGCGCCCTGTAGTGTGTGTGTGTGTGTGTGTG--------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...........GTGTGTGTGTGTGTGTGTGTG--------------------------------------------------------------------------------------------------------------	21	45	0.16	0.00	0.02	0.13	0.00
...............GTGTGTGTGTGTATATG--------------------------------------------------------------------------------------------------------------	18	23	0.17	0.00	0.17	0.00	0.00
..........ACTGTGTGGGTGTGTGTG..................................................................................................................	18	20	0.20	0.00	0.10	0.10	0.00
.............GTGTGTGTGTGTGTATATG--------------------------------------------------------------------------------------------------------------	20	16	0.19	0.06	0.13	0.00	0.00
.........GAGTGTGTGTGTGTGTGTGTGTG--------------------------------------------------------------------------------------------------------------	25	33	0.09	0.00	0.00	0.09	0.00
...........GTGTGTGTGTGTGTGTGTGTG--------------------------------------------------------------------------------------------------------------	22	49	0.06	0.00	0.04	0.02	0.00

scaffold_181009:3229287-3229319 +

18.57

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G-TGTGCATGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............TGTGTGCGTCTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	22	47	0.68	0.00	0.66	0.02	0.00
..........TGTGTGCGTCTGTGTGTGTGTG..............................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
........TGTGTGCGTCTGTGTGTGTGTG................................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
G-TGTGCGTCTGTGTGTGTGTGT.......................................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
.........GTGTGCGTCTGTGTGTGTGTGT...............................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
...........GTGTGCGTCTGTGTGTGTGTGT.............................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
...........GTGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	23	31	0.48	0.00	0.10	0.39	0.00
.........GTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
..TTTGCATGTGTGTTTGTGTGT.......................................................................................................................	21	1	15.00	6.00	7.00	2.00	0.00
...GTCCATGTGGGTGTGTGTGT.......................................................................................................................	20	3	4.67	2.67	2.00	0.00	0.00
.......GTGTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................	25	51	0.27	0.00	0.02	0.25	0.00
.........GTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	25	51	0.27	0.00	0.02	0.25	0.00
........TGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	26	44	0.32	0.00	0.02	0.30	0.00
............TGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	22	40	0.33	0.00	0.05	0.28	0.00
........TGTGTGTGTGTGTGTGTGTGTG................................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
..........TGTGTGTGTGTGTGTGTGTGTG..............................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
............TGTGTGTGTGTGTGTGTGTGT.............................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
........TGTGTGTGTGTGTGTGTGTGT.................................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
..........TGTGTGTGTGTGTGTGTGTGT...............................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
........TGTGTATGTGTGTGTGTGTGTG................................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
..........TGTGTATGTGTGTGTGTGTGTG..............................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
..TGTGTATGTGTGTGTGTGTGTG......................................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
............TGTGTATGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	22	53	0.19	0.00	0.00	0.19	0.00
..........TGTGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	25	33	0.24	0.00	0.00	0.24	0.00
........TGTGTGTGTGTGTGTGTGTGTGTGC.............................................................................................................	25	33	0.24	0.00	0.00	0.24	0.00
............TATGTGTGTTTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	23	8	0.88	0.00	0.25	0.50	0.13
.......ATGTGTGTGTGTGTGTATGTGA.................................................................................................................	22	14	0.50	0.00	0.36	0.14	0.00
........TGTGTGTGTGTGTGTGTGTGTGTGCG------------------------------------------------------------------------------------------------------------	26	24	0.29	0.00	0.00	0.29	0.00
.............ATGTGTGTGTGTGTGTATGTG------------------------------------------------------------------------------------------------------------	22	14	0.50	0.00	0.36	0.14	0.00
.........GTGTGTGTGTGTGTGTGTGTGTGC.............................................................................................................	24	35	0.20	0.00	0.03	0.17	0.00
.............GTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	21	45	0.16	0.00	0.02	0.13	0.00
...........GTGTGTGTGTGTGTGTGTGTG..............................................................................................................	21	45	0.16	0.00	0.02	0.13	0.00
...........GTGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	24	35	0.20	0.00	0.03	0.17	0.00
.........GTGTGTGTGTGTGTGTGTGTG................................................................................................................	21	45	0.16	0.00	0.02	0.13	0.00
..........TGTGTGCGTCTGTGTGTGTGTGT.............................................................................................................	23	42	0.14	0.00	0.12	0.02	0.00
........TGTGTGCGTCTGTGTGTGTGTGT...............................................................................................................	23	42	0.14	0.00	0.12	0.02	0.00
.......ATATGTGTGTGTGTGTGTGTGTA................................................................................................................	23	18	0.33	0.00	0.33	0.00	0.00
.......ATATGTGTGTGTGTGTGTG....................................................................................................................	19	26	0.19	0.12	0.00	0.08	0.00
.......AAGTGTGTGTGTGTGTGTGGGTGTG..............................................................................................................	25	9	0.56	0.00	0.00	0.56	0.00
........TGTGTGTGTGTGAGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	26	47	0.09	0.00	0.00	0.09	0.00
.......ATATGTGTGTGTGTGTGTGT...................................................................................................................	20	21	0.19	0.00	0.14	0.00	0.05
.........ATGTGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	26	38	0.11	0.00	0.00	0.11	0.00
..TTTGCATGTGTGTTTGTGT.........................................................................................................................	19	4	1.00	0.75	0.00	0.25	0.00
.......ATGTGTGTGTGTGTGTGTGTGTGTGC.............................................................................................................	26	38	0.11	0.00	0.00	0.11	0.00
...........GTGTGTGTGTGTGTGTGTGTGT.............................................................................................................	22	38	0.11	0.03	0.03	0.05	0.00
.......TTGTGTGTGTGTGTGTGTGTGTGTGC.............................................................................................................	26	39	0.10	0.00	0.00	0.10	0.00
.........GTGTGTGTGTGTGTGTGTGTGT...............................................................................................................	22	38	0.11	0.03	0.03	0.05	0.00
.........TTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	26	39	0.10	0.00	0.00	0.10	0.00
...........GAGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	25	33	0.09	0.00	0.00	0.09	0.00
.........GAGTGTGTGTGTGTGTGTGTGTGAG------------------------------------------------------------------------------------------------------------	25	33	0.09	0.00	0.00	0.09	0.00
..................TGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	18	24	0.13	0.00	0.04	0.08	0.00
C-TGTGCATGTGTTTGTGTGT.........................................................................................................................	20	2	1.50	0.50	1.00	0.00	0.00
........TGTGTGTGTGTGTGTGTGTGTGC...............................................................................................................	23	44	0.07	0.00	0.02	0.05	0.00
...GTCCATGTGGGTGTGTGTGTGT.....................................................................................................................	22	3	1.00	0.00	1.00	0.00	0.00
.........GTGTGTGTGTGTGTGTGTGTGC...............................................................................................................	22	49	0.06	0.00	0.04	0.02	0.00
...........GTGTGCGTGTGTGTGTCTGTGTG------------------------------------------------------------------------------------------------------------	23	36	0.08	0.00	0.08	0.00	0.00
.........GTGTGTGTGTGTGTGTGTGTGTGCG------------------------------------------------------------------------------------------------------------	25	26	0.12	0.00	0.00	0.12	0.00
.........ATGTGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	25	36	0.08	0.06	0.00	0.03	0.00
..........TGTGTGTGTGTGTGTGTGTGTGC.............................................................................................................	23	44	0.07	0.00	0.02	0.05	0.00
G-TGTGCGTGTGTGTGTCTGTGTG......................................................................................................................	23	36	0.08	0.00	0.08	0.00	0.00
................TGTGTGTATGTGTGTGTG------------------------------------------------------------------------------------------------------------	20	26	0.12	0.00	0.12	0.00	0.00
....TGCCTGTGTTTGTGTGTGTGTG....................................................................................................................	22	6	0.50	0.00	0.17	0.33	0.00
.....GCCAGTGTGTGTGTGTGTG......................................................................................................................	19	16	0.19	0.00	0.13	0.06	0.00
.......ATGTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................	25	36	0.08	0.06	0.00	0.03	0.00
.............GTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	22	49	0.06	0.00	0.04	0.02	0.00
............TGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	23	44	0.07	0.00	0.02	0.05	0.00
.........GTGTGCGTGTGTGTGTCTGTGTG..............................................................................................................	23	36	0.08	0.00	0.08	0.00	0.00
...........GTGTGTGTGTGTGTGTGTGTGC.............................................................................................................	22	49	0.06	0.00	0.04	0.02	0.00

131

scaffold_181150:3879373-3879422 -

18.57

GGC----------------GCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GTCTTCATTCGGATTCTTTTTGAGTTTGTGTGTGTGTGTGAGTGTGAGTG------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................TGACATTGTGTGTGTGTG........................................................................................................................	18	3	2.33	0.00	2.33	0.00	0.00
.......................GATTGTGTGTGTCTGTGAGT...................................................................................................................	20	1	3.00	1.00	2.00	0.00	0.00
.......................GTTTGTGTGTGTGTATGAGTG..................................................................................................................	21	5	0.60	0.20	0.00	0.40	0.00

scaffold_180702:4224176-4224207 -

18.57

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G-----------TGTGTGTGTGTGTGTGTGTGTGCAGAGCCGG---------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............TGTGTGCGTCTGTGTGTGTGTG............................................................................................................	22	47	0.68	0.00	0.66	0.02	0.00
G-----------TGTGCGTCTGTGTGTGTGTGT.............................................................................................................	22	47	0.55	0.02	0.53	0.00	0.00
G-----------TGTGTGTGTGTGTGTGTGTGTG............................................................................................................	23	31	0.48	0.00	0.10	0.39	0.00
............TGTGTGTGTGTGTGTGTGTGTG............................................................................................................	22	40	0.33	0.00	0.05	0.28	0.00
............TGTGTGTGTGTGTGTGTGTGT.............................................................................................................	21	56	0.20	0.00	0.11	0.09	0.00
............TGTGTATGTGTGTGTGTGTGTG............................................................................................................	22	53	0.19	0.00	0.00	0.19	0.00
G-----------TGTGTGTGTGTGTGTGTGTGTGC...........................................................................................................	24	35	0.20	0.00	0.03	0.17	0.00
G-----------TGTGTGTGTGTGTGTGTGTG..............................................................................................................	21	45	0.16	0.00	0.02	0.13	0.00
.............GTGTGTGTGTGTGTGTGTGTG............................................................................................................	21	45	0.16	0.00	0.02	0.13	0.00
G-----------TGTGTGTGTGTGTGTGTGTGT.............................................................................................................	22	38	0.11	0.03	0.03	0.05	0.00
G-----------TGTGCGTGTGTGTGTCTGTGTG............................................................................................................	23	36	0.08	0.00	0.08	0.00	0.00
..................TGTGTGTGTGTGTGTGCA..........................................................................................................	18	24	0.13	0.00	0.04	0.08	0.00
................TGTGTGTATGTGTGTGTGCA..........................................................................................................	20	26	0.12	0.00	0.12	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGTGC...........................................................................................................	23	44	0.07	0.00	0.02	0.05	0.00
............TGTGTGTGTGTGCGTGTGTGTGTAG.........................................................................................................	25	6	0.50	0.00	0.00	0.50	0.00
.............GTGTGTGTGTGTGTGTGTGTGC...........................................................................................................	22	49	0.06	0.00	0.04	0.02	0.00
G-----------TGTGTGTGTGTGTGTGTGTGC.............................................................................................................	22	49	0.06	0.00	0.04	0.02	0.00
G-----------TGTGTGTGTGTGTGTGTGTGTGCG..........................................................................................................	25	26	0.12	0.00	0.00	0.12	0.00

105

scaffold_181089:9263295-9263328 -

15.71

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA AATATGTGTGGGTGGGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......TGTGGGTGGGTGTATGTGTGT...................................................................................................................	21	3	1.67	0.33	0.67	0.67	0.00
...........GTGGGTGTGTGGGTGGGTG................................................................................................................	19	2	2.50	0.00	0.00	2.50	0.00
.................GTGTGTGTGTGTATATG------------------------------------------------------------------------------------------------------------	18	23	0.17	0.00	0.17	0.00	0.00
...........GTGGGTGTGTGGGTGTGGGTGT.............................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...ATGGGTGGGTGGGTGTGA.........................................................................................................................	18	1	3.00	2.00	1.00	0.00	0.00
...............GTGTGTGTGTGTGTATATG------------------------------------------------------------------------------------------------------------	20	16	0.19	0.06	0.13	0.00	0.00

scaffold_181096:1523441-1523469 +

12.86

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

scaffold_180698:636645-636657 +

6.43

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA ---------------------------------------------------------------------------------------------------------------------------------TTAAATTATGCAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................................................................................A	26	38	0.11	0.00	0.00	0.11	0.00
.............................................................................................................................................A	25	36	0.08	0.06	0.00	0.03	0.00
............................................................................................................................................AA	18	28	0.07	0.00	0.00	0.07	0.00
.............................................................................................................................................A	25	9	0.11	0.00	0.00	0.11	0.00
.............................................................................................................................................A	25	38	0.03	0.00	0.03	0.00	0.00
............................................................................................................................................AA	20	24	0.04	0.00	0.04	0.00	0.00
.............................................................................................................................................C	18	26	0.04	0.00	0.04	0.00	0.00
.............................................................................................................................................A	20	11	0.09	0.00	0.09	0.00	0.00
.............................................................................................................................................A	18	6	0.17	0.00	0.17	0.00	0.00
..........................................................................................................................................TCAA	20	31	0.03	0.00	0.00	0.03	0.00
...........................................................................................................................................CAA	20	8	0.13	0.13	0.00	0.00	0.00
.............................................................................................................................................A	21	2	0.50	0.00	0.00	0.50	0.00
.............................................................................................................................................A	22	2	0.50	0.00	0.00	0.50	0.00
..........................................................................................................................................GCAT	18	5	0.20	0.00	0.20	0.00	0.00
............................................................................................................................................AA	20	4	0.25	0.25	0.00	0.00	0.00
.............................................................................................................................................A	21	6	0.17	0.00	0.00	0.17	0.00
.............................................................................................................................................A	24	3	0.33	0.00	0.33	0.00	0.00
.............................................................................................................................................G	24	33	0.03	0.00	0.03	0.00	0.00
............................................................................................................................................AA	21	15	0.07	0.00	0.07	0.00	0.00
..........................................................................................................................................GCTA	18	33	0.03	0.00	0.03	0.00	0.00
.............................................................................................................................................G	23	44	0.02	0.00	0.02	0.00	0.00
.............................................................................................................................................A	19	18	0.06	0.00	0.06	0.00	0.00
.............................................................................................................................................A	24	42	0.02	0.02	0.00	0.00	0.00
.............................................................................................................................................G	22	48	0.02	0.02	0.00	0.00	0.00
.............................................................................................................................................A	24	51	0.02	0.00	0.00	0.02	0.00
.............................................................................................................................................A	18	34	0.03	0.00	0.03	0.00	0.00
...........................................................................................................................................CAT	18	8	0.13	0.00	0.13	0.00	0.00
...........................................................................................................................................CGA	18	5	0.20	0.00	0.20	0.00	0.00
...........................................................................................................................................CAA	20	8	0.13	0.00	0.00	0.13	0.00
.............................................................................................................................................G	22	49	0.02	0.02	0.00	0.00	0.00
.............................................................................................................................................A	23	51	0.02	0.00	0.00	0.02	0.00
.............................................................................................................................................A	20	4	0.25	0.25	0.00	0.00	0.00
.............................................................................................................................................A	22	10	0.10	0.10	0.00	0.00	0.00
.............................................................................................................................................A	23	47	0.02	0.00	0.00	0.02	0.00
............................................................................................................................................AA	19	31	0.03	0.00	0.03	0.00	0.00
.............................................................................................................................................A	18	41	0.02	0.02	0.00	0.00	0.00
.............................................................................................................................................T	22	5	0.20	0.20	0.00	0.00	0.00
.............................................................................................................................................A	18	7	0.14	0.00	0.14	0.00	0.00
.............................................................................................................................................A	19	2	0.50	0.00	0.50	0.00	0.00
............................................................................................................................................GA	20	5	0.20	0.00	0.00	0.20	0.00
.............................................................................................................................................T	20	13	0.08	0.08	0.00	0.00	0.00

None

droVir3 - 36 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

124

scaffold_12963:15848081-15848201 -

50.76

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGA---------AAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAAT------------TTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G-TGTGCATGTGTGTGCGTGTGTGTGTGTGTGTGCAAAAATATGCAAATCGGTTT-TGCACTGCTGA-CGACTTCTTCACAGCAGCTGAAATGTGCTTAAAATTCGCAAAATTGTAGTTCA---------------------------------------TTT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........TGTATGCGTGCGTGTGTGTGT....................................................................................................................................	21	11	0.27	0.09	0.18	0.00	0.00	0.00

scaffold_12875:7283657-7283805 -

48.11

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAAT---CGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTA------------CCTGATTTTTCTACATCTCACT-TACAGTTAGTAAT----------CAAATTGCACAA GAAGTTCGGCGTTGTGTGTGAGTGTGT------GGCACATTCGCGGATTGTTGATAGGGTA----ATTGAT---AGCATCATGAGTGC---TGAGTTAGCTGTGGTAATAGCAGAGTT---TACATAGGACAACAAAATTAGTAATGAGTTTATAATAAAATGTACAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............TGTGTGTGAGTGAGT------GGG....................................................................................................................................	18	15	0.07	0.07	0.00	0.00	0.00	0.00
............TGTCTGTGAGTGTGT------GGGAC..................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGT------CGCA...................................................................................................................................	19	11	0.09	0.09	0.00	0.00	0.00	0.00
..............TGTGTGAGTGTGT------GTGACA.................................................................................................................................	19	5	0.20	0.20	0.00	0.00	0.00	0.00

scaffold_12875:11641748-11641862 +

42.98

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACG---CATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GTTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTTC----GTTTTGTGTGTAGAGGACAATTTAA--------AATTGCATCGTTGTATATAGTT-------------------TTATCTTCTCATCGAACTCAAATGCTACAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............GTGTGTGTGTGTGTGTGTGTTC----........................................................................................................	22	24	0.13	0.00	0.08	0.04	0.00	0.00
........TGTGTGTGTGTGTGTGTGTGT....................................................................................................................	21	138	0.02	0.00	0.00	0.02	0.00	0.00

scaffold_12970:4139939-4140052 +

42.89

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G-----------TGTGTGTGTGTGTGTGTGTGTGTGTCTTCTGTCTTTGT-----GTGTGTATCTGTGATTAGCTGCT-----------CATTTA-TCGGTTGCTGCACATGCTAAGCCAAGACGCCAACCAGCGTGCAAAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................TGTGTGTGTGTGTGTGTATC........................................................................................................	20	18	0.17	0.17	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGTGTGTGTTC.....................................................................................................	22	24	0.13	0.00	0.08	0.04	0.00	0.00
....................TGTGTGTGCGTCTGTGTC........................................................................................................	18	18	0.11	0.00	0.00	0.00	0.11	0.00
..................TGTGTGTGTATGTGTGTGGC........................................................................................................	20	17	0.06	0.06	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGTGTAGC........................................................................................................	19	48	0.02	0.00	0.00	0.02	0.00	0.00
.................GTGTGTGTGTGTGTCTGTGAC........................................................................................................	21	15	0.07	0.00	0.00	0.07	0.00	0.00
.................GTGTGTGTGTGTGTGTTCGTC........................................................................................................	21	17	0.06	0.06	0.00	0.00	0.00	0.00
..................TATGTGTCTGTGTGTGTGTC........................................................................................................	20	29	0.03	0.03	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTGTTTGTGTCC.......................................................................................................	25	10	0.10	0.10	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGTGTGTCTA......................................................................................................	21	217	0.00	0.00	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGTGTCTCC.......................................................................................................	22	23	0.04	0.04	0.00	0.00	0.00	0.00
..................TATGTGAGTGTGTGTGTGTC........................................................................................................	20	27	0.04	0.00	0.04	0.00	0.00	0.00
.....................GTGTGTGTGTGTGTGTTTT......................................................................................................	19	32	0.03	0.03	0.00	0.00	0.00	0.00
..................TGTGTGTGTGTGTGTGTGTCTT......................................................................................................	22	11	0.09	0.09	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGCGTGTGTTTT......................................................................................................	21	29	0.03	0.03	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGTGTGTTTT......................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGTGTGCCTA......................................................................................................	28	12	0.08	0.08	0.00	0.00	0.00	0.00
......................TGTGTGTGTGTGTGTTTTCC....................................................................................................	20	14	0.07	0.07	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGTGTGTCC.......................................................................................................	22	15	0.07	0.07	0.00	0.00	0.00	0.00
.............................................................................................................................................A	19	41	0.02	0.00	0.00	0.02	0.00	0.00
...............GTGTGTGTGTGTGTGTGTGTGTCT.......................................................................................................	24	103	0.01	0.01	0.00	0.00	0.00	0.00
..................TGTGTGTGTGCGTGTGTGTTTTC.....................................................................................................	23	6	0.17	0.17	0.00	0.00	0.00	0.00
............................................CTCTGT-----GTGTGTGTCTGTG..........................................................................	19	25	0.04	0.00	0.00	0.04	0.00	0.00
................TGTGTGTGTGTGTGTGTGTGTCC.......................................................................................................	23	13	0.08	0.08	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGTGTGTTTTTT....................................................................................................	23	29	0.03	0.00	0.03	0.00	0.00	0.00
.............................................................................................................................................A	20	6	0.17	0.17	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTGTGCCA.......................................................................................................	23	31	0.03	0.00	0.00	0.03	0.00	0.00
..............CGTGTGTGTGTGTGTGTGTGTATC........................................................................................................	24	16	0.06	0.06	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTGTGTGTGCC........................................................................................................	24	143	0.01	0.01	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGTGTTTTTT......................................................................................................	23	29	0.03	0.00	0.03	0.00	0.00	0.00
......................TGTGTGTGTGTGTGTGTTC.....................................................................................................	19	36	0.03	0.00	0.03	0.00	0.00	0.00
....................TGTGTGTGTGTTTGTGTGTTC.....................................................................................................	21	29	0.03	0.03	0.00	0.00	0.00	0.00
.............................................TTTGT-----GTGTGTGTCTGTGGT........................................................................	20	3	0.33	0.00	0.33	0.00	0.00	0.00
..................TATGTGTGTGTGTGTGTGTCT.......................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
....................TGTGTGTGTGTGTGTGTCT.......................................................................................................	19	214	0.00	0.00	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGTGTGTCTCC.....................................................................................................	22	23	0.04	0.04	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTGTGACA.......................................................................................................	23	22	0.05	0.05	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTGTTTC........................................................................................................	22	8	0.13	0.00	0.13	0.00	0.00	0.00
..................TGTGTGTGTGTGTGAGTGTTTT......................................................................................................	22	23	0.04	0.00	0.04	0.00	0.00	0.00
..................TGTGTGTGTGTGTTTGTGTCC.......................................................................................................	21	24	0.04	0.04	0.00	0.00	0.00	0.00
.............................................................................................................................................A	18	11	0.09	0.00	0.00	0.09	0.00	0.00
.................GTGTGTGTGTGTGTGTGTGTTTT......................................................................................................	23	16	0.06	0.00	0.00	0.06	0.00	0.00
....................TGTGTGTGTGTGTGTGTCC.......................................................................................................	19	27	0.04	0.04	0.00	0.00	0.00	0.00
................TGTGTCCGTGTGTGTGTGTGTC........................................................................................................	22	4	0.25	0.25	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGTGTGTCGC......................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
....................TGTGGGTGTGTGTGTGTCC.......................................................................................................	19	31	0.03	0.00	0.03	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGTGTCGC........................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
..................TGTGTGTGTGTTTGTGTGTC........................................................................................................	20	204	0.00	0.00	0.00	0.00	0.00	0.00
...................ATGTGTGTGTGTGTGTGTC........................................................................................................	19	32	0.03	0.03	0.00	0.00	0.00	0.00
.................GTGTGTGTGTATGTGTGTGGC........................................................................................................	21	12	0.08	0.00	0.00	0.08	0.00	0.00
..................TGTGTGTGTGTGTGTGTGTCC.......................................................................................................	21	20	0.05	0.05	0.00	0.00	0.00	0.00
....................TGTGTGTGTGTGTGGTTCT.......................................................................................................	19	18	0.06	0.00	0.06	0.00	0.00	0.00
....................TGTGTGTGTGTGAGTGTCTTC.....................................................................................................	21	2	0.50	0.00	0.50	0.00	0.00	0.00
....................TGCGTGTGTGTGTGTGTTTT......................................................................................................	20	34	0.03	0.00	0.03	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGCGCGTCT.......................................................................................................	22	15	0.07	0.07	0.00	0.00	0.00	0.00
................TGTGCGTGTGTGTGTGGGTGTC........................................................................................................	22	8	0.13	0.13	0.00	0.00	0.00	0.00
................TGTGTCTGTGTGTGTATGTGTC........................................................................................................	22	9	0.11	0.00	0.00	0.11	0.00	0.00
.................GTGTGTGTGTGTGTGTGTTGC........................................................................................................	21	28	0.04	0.04	0.00	0.00	0.00	0.00

134

scaffold_13047:8029632-8029758 -

42.21

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTC-GTAAA------------ACGCATTTAATT----------GTTAACAGCAGCA---------------------------AAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G-----------TGTGTGTGTGTGTGTGTGTGCGTGAGCTTTGATTGCCATAAAAATGTAATCATTTTGCATTTAATTAAAAGTACGAGCTAATTGTTGTCACATCGATGTACGCACGCATGTGTGTGTGAGTGTGTG------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....................AGTGTGTGTGTGCGTGGGC.........................................................................................................................................................	19	4	3.25	1.00	0.00	2.25	0.00	0.00
....................AGTGTGTGTGTGCGTGGG..........................................................................................................................................................	18	28	0.14	0.00	0.00	0.14	0.00	0.00
.................ATGTGTGTGTGTGTGCGTG............................................................................................................................................................	19	30	0.10	0.10	0.00	0.00	0.00	0.00
G-----------TGTGTGTGTGTGTGTGTGTTC...............................................................................................................................................................	22	24	0.13	0.00	0.08	0.04	0.00	0.00

scaffold_12963:18958187-18958358 +

41.63

GGCGCGCA---CTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTC------------------GTA-AAACGCATTTAATT-GTTAACAGCAGCAAAAACGTGTATAA------TTTACCTGATTTTTCTACATCTCACTT----ACAGTTAGTAATCAAATTGCACAA GCCCTGTAGGTTTGTTGTGTATGTGTGTGTGTGTCTGCAACAT--GATTTGCTTTATTATTTGCAGCATGTAAAAACGCGTTGAACAGGGTATTAAATGTAAAATTGCGTAAAATTATAAATACCCTGTTTTTATGAAAATT-AGATATGTGTAAGGTGTATATACATTCTAGAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..............ATGTGTATGTGTGTGTGTG..............................................................................................................................................	19	28	0.11	0.11	0.00	0.00	0.00	0.00
...........TTGTAGTGTATGTATGTGT.................................................................................................................................................	19	1	2.00	0.00	2.00	0.00	0.00	0.00
.................TATATGTGTGTGTGTGTCTGG.........................................................................................................................................	21	22	0.09	0.09	0.00	0.00	0.00	0.00
................GTGTGTGTGTGTGTGTGTCTCC.........................................................................................................................................	22	23	0.04	0.04	0.00	0.00	0.00	0.00
...............TGTGGATGTGTGAGTGTG..............................................................................................................................................	18	15	0.07	0.07	0.00	0.00	0.00	0.00
...............TGTGTATGTGTGTGTGCGTA............................................................................................................................................	20	37	0.03	0.03	0.00	0.00	0.00	0.00
...............TGTGGATGTGTGTGTGTT..............................................................................................................................................	18	23	0.04	0.00	0.04	0.00	0.00	0.00
.............GTTGxATATGTGTGTGTGTGTCT...........................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...........TTGGTGTGTATGTGTGTGTGT...............................................................................................................................................	21	15	0.07	0.07	0.00	0.00	0.00	0.00
.............GTTGTGTATGTGTGTGCA................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
..........CTTGTTGTGTACGTGTGTGT.................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
....................ATGTGTGTGTGTGTCTGG.........................................................................................................................................	18	52	0.02	0.00	0.02	0.00	0.00	0.00
...............TGCGTATGTGTGAGTGTGT.............................................................................................................................................	19	18	0.06	0.06	0.00	0.00	0.00	0.00
....................ATGTGTGTGTGTGTCTGGT........................................................................................................................................	19	7	0.14	0.00	0.00	0.00	0.00	0.14
............TGTAGTGTATGTATGTGTG................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..........TTTCTTGTGTATGTGTATGTG................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...................TATGTGTGTGTGTGTCTGGC........................................................................................................................................	20	5	0.20	0.00	0.00	0.00	0.20	0.00
...............TGTGTATGTATGTGTGTGT.............................................................................................................................................	19	14	0.07	0.07	0.00	0.00	0.00	0.00
....................ATGTGTGTGTGTGTCTGGC........................................................................................................................................	19	6	0.17	0.00	0.00	0.00	0.17	0.00
...............TGTGTATGTGTGTGTATGT.............................................................................................................................................	19	235	0.00	0.00	0.00	0.00	0.00	0.00
...................TATGTGTGTGTGTGTCTGGCA.......................................................................................................................................	21	3	0.33	0.33	0.00	0.00	0.00	0.00
.............GGTATGTATGTGTGTGTGT...............................................................................................................................................	19	26	0.04	0.04	0.00	0.00	0.00	0.00
..........TTTGTAGTGTATGTATGTGT.................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.............ATTGTGTATATGTGTGTGT...............................................................................................................................................	19	18	0.06	0.06	0.00	0.00	0.00	0.00
..................GTATGTGTGTGTGTGTGTGCT........................................................................................................................................	21	39	0.03	0.00	0.00	0.03	0.00	0.00
................GTCAATGTGTGTGTGTGT.............................................................................................................................................	18	23	0.04	0.04	0.00	0.00	0.00	0.00
............TGTTGTGTATGTGTGTGCA................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...........TTGCTGTGTGTGTGTGT...................................................................................................................................................	17	42	0.02	0.00	0.02	0.00	0.00	0.00
.....................TTTGTGAGTGTGTCTGC.........................................................................................................................................	17	1	1.00	0.00	1.00	0.00	0.00	0.00
.............CTTGTGTATGCGTGTGTG................................................................................................................................................	18	8	0.13	0.00	0.13	0.00	0.00	0.00
....................GTGTGTGTGTGTGTGTGCAAC......................................................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
...............TGTGTATGCATGTGTGTGT.............................................................................................................................................	19	32	0.03	0.00	0.00	0.03	0.00	0.00

scaffold_12875:17016878-17017024 +

40.82

GGCGCGCACTGGTGTGTGTGTGTGAGTGTG-GG--------TGGAAAA-TCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCT-CACTTACAGTTAGTAATCAAATTGCACA-A GGCATTTGCATATTTTTCTTTTGGGGCAAGTGGCTTGAGGCCGACGAAGCTGGCAAGTTCAAGGCGCGTGAAGGTGTT-GCATAGATAAAGATACAGATA------CAGATACAGCTACAGCTACGGCTACGGCTAAAGATACAGATACTTATG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................................TG------CAGATACAGCTACAGT................................	18	8	0.13	0.00	0.00	0.13	0.00	0.00
......................................................AAGTTCAAGGTGCGCGAAGGT...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................................................................TACAGATA------CAGATACAGCTAC...................................	21	153	0.01	0.01	0.00	0.00	0.00	0.00
........................................................GTTCAAGGTGCGCGAAGGT...............................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................TACAGATA------CAGATACATCTGCA..................................	22	13	0.08	0.08	0.00	0.00	0.00	0.00
..............................................................GGAGCxTGAAGGTGTT-GCAT.......................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_13042:248285-248457 +

39.54

GGCGCGCACTG----------------------------GTGTGTGTGTGTG------------------------AGTGTGGGT--------------------------------------GGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G-CGCGTATTTGCCATTGTGTGCGTGCGTACGTGCGTATGTGTGTGTGTGTGCCAGAGCGAGTGAGAGCGACAAAGAGTGCGGGTGCGAGTGCGAGAGCGAGAAGGCAGCAGGCAGGAAGAGCGAGCAAATGATTTTTGTAAAACGCATTTACTAATTACAAAT-------ACA---------------------------------------------------AATACAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.........................................................................AAGACTGCGGGTTCGAGT.............................................................................................................................................	18	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................................AGCGACAAACAGTGCGAG....................................................................................................................................................	18	1	2.00	0.00	2.00	0.00	0.00	0.00
..............................CGTGCATGTGTGTGTGTGTGT.....................................................................................................................................................................................	21	28	0.04	0.00	0.00	0.04	0.00	0.00
.......................GTGCGTGCGTGCGTGTGTG..............................................................................................................................................................................................	19	19	0.05	0.05	0.00	0.00	0.00	0.00
...............................ATGCGTATGTGTGAGTGTGTG....................................................................................................................................................................................	21	3	0.33	0.00	0.33	0.00	0.00	0.00
...................GTGCGTGCGTGCGTGTGT...................................................................................................................................................................................................	18	26	0.04	0.00	0.00	0.04	0.00	0.00
.....................................................................................................GAAGGCAGCAGGCGCGAA.................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................TTGCTTATGTGTGTGTGTGTG....................................................................................................................................................................................	21	9	0.11	0.11	0.00	0.00	0.00	0.00
..............................CGTGCGTGTGTGTGTGTGCG......................................................................................................................................................................................	20	31	0.03	0.00	0.00	0.03	0.00	0.00
......................CGTGCGTACGTGTGTGTGT...............................................................................................................................................................................................	19	4	0.25	0.00	0.25	0.00	0.00	0.00
.........................GCGTGCGTGCGTGTGTGT.............................................................................................................................................................................................	18	27	0.04	0.00	0.00	0.04	0.00	0.00
..............................CGTCCGTCTGTGTGTGTG........................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................GTGCGTGCGTGCGTGTGT...............................................................................................................................................................................................	18	26	0.04	0.00	0.00	0.04	0.00	0.00
..........................................TGTGTGTGTGTAAGAGCGA...........................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
..............................CGTGCGTGTGTGTTTGTGTG......................................................................................................................................................................................	20	14	0.07	0.00	0.00	0.07	0.00	0.00
..................CGTGCGTGCGTGCGTGCG....................................................................................................................................................................................................	18	4	0.25	0.00	0.25	0.00	0.00	0.00
................................CGCGTCTGTGTGTGTGTGTG....................................................................................................................................................................................	20	18	0.06	0.00	0.06	0.00	0.00	0.00
..............................................................................TGCGAATGCGAGTGCGAG........................................................................................................................................	18	4	0.25	0.00	0.25	0.00	0.00	0.00
...............................ATGCGTATGTGTGAGTGTG......................................................................................................................................................................................	19	3	0.33	0.33	0.00	0.00	0.00	0.00
............................................................................AGTGCGAGTGCAAGTGCGAGAGCGA...................................................................................................................................	25	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................CGTGCATGTGTGTGTGTGTG......................................................................................................................................................................................	20	31	0.03	0.03	0.00	0.00	0.00	0.00
................................TGTGTGTGTGTGTGTGTGTGCCA.................................................................................................................................................................................	23	31	0.03	0.00	0.00	0.03	0.00	0.00
..............................CGTGCGTGTATGTGTGTG........................................................................................................................................................................................	18	28	0.04	0.00	0.04	0.00	0.00	0.00
..............................CGTGCGTACGTGTGTGTGT.......................................................................................................................................................................................	19	4	0.25	0.00	0.25	0.00	0.00	0.00
....................................TATGTGTGTGTGTGTATCAG................................................................................................................................................................................	20	5	0.20	0.20	0.00	0.00	0.00	0.00
...................................................................................GTGCGAGTGTGAGAGCGGG..................................................................................................................................	19	2	0.50	0.00	0.50	0.00	0.00	0.00
...................................GTATGTGTGTGTGTGTGGA..................................................................................................................................................................................	19	47	0.02	0.00	0.00	0.02	0.00	0.00
................................TGCGTATGTGTATGTGTC......................................................................................................................................................................................	18	4	0.25	0.00	0.00	0.25	0.00	0.00
..................................CGTATGTGTGCGAGTGTG....................................................................................................................................................................................	18	7	0.14	0.00	0.14	0.00	0.00	0.00
........................TGTGTACGTGCGTGTGTGTGTG..........................................................................................................................................................................................	22	12	0.08	0.08	0.00	0.00	0.00	0.00
....................................................................................TGCGAATGCGAGTGCGAG..................................................................................................................................	18	4	0.25	0.00	0.25	0.00	0.00	0.00
...................................ATATGTGTGTGTGTGTTC...................................................................................................................................................................................	18	44	0.02	0.00	0.00	0.00	0.00	0.02
...............................ATGCGTCTGTGTGTGTGT.......................................................................................................................................................................................	18	44	0.02	0.00	0.00	0.02	0.00	0.00
.......................................GTGTGTGTGCGTGCAAGAG..............................................................................................................................................................................	19	3	0.33	0.00	0.00	0.33	0.00	0.00
..............................CGTGCATGTGTGTGTGTGTGTG....................................................................................................................................................................................	22	24	0.04	0.04	0.00	0.00	0.00	0.00
...............................GTGCGTATGTGTGTGTGTGTG....................................................................................................................................................................................	21	9	0.11	0.11	0.00	0.00	0.00	0.00
..............................CGTGCGTGCGTGTGTGTGTGTG....................................................................................................................................................................................	22	18	0.06	0.06	0.00	0.00	0.00	0.00
................................TGCGTTTGTGTGTGTATG......................................................................................................................................................................................	18	14	0.07	0.00	0.07	0.00	0.00	0.00
.....................................ATGTGTGTGTCTGTGCCTG................................................................................................................................................................................	19	3	0.33	0.00	0.00	0.33	0.00	0.00
..........................CGTGCGTGCGTGTGTGTGTGTG........................................................................................................................................................................................	22	18	0.06	0.06	0.00	0.00	0.00	0.00
................................TGCGTATGTGTGAGTGTGT.....................................................................................................................................................................................	19	18	0.06	0.06	0.00	0.00	0.00	0.00
........................................TGTGTGTGTGTGACAGTGCG............................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00

scaffold_12823:1289559-1289728 -

38.27

GGCGCGCACTGG--TGTGTGTGTGTGAGTGTGGGTGGAAAATCG----GATTTCGTAA-------AACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACAT-----------------CTCACTTACAGTTAGTAATCAAATTGCACAA CGCGTGCGCTTGGATGTGTGTGTGTGTGCGTGCGTGCGCGTTCGTTCGGCTC--GTGCCGCAGACGAAGCATTTAACTGTTAACAGCGCTCATTTTGTGTTAACATCGCCTCTTGTTTGTTCGTGAACGCCGAAGTCGACGCACGCCTCTCGTTTTCGCGCGCTTCGCACAC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...........................................................................................................................................................................A	18	21	0.24	0.00	0.19	0.00	0.00	0.05
................AGTGTGTGTGTGCGTGGG..........................................................................................................................................	18	28	0.14	0.00	0.00	0.14	0.00	0.00
.............ATGTGTGTGTGTGTGCGTG............................................................................................................................................	19	30	0.10	0.10	0.00	0.00	0.00	0.00
.............................................................................................................................AACGCCGAAGTCGACGCACGCCTC.......................	24	1	2.00	0.00	0.00	0.00	0.00	2.00
.................GTGTGTGTGTGCGTGGGC.........................................................................................................................................	18	42	0.05	0.02	0.00	0.02	0.00	0.00
...............................................................................................................................CGCCGAAGTCGACGCACGCCTC.......................	22	1	2.00	0.00	0.00	0.00	1.00	1.00
.....................GTGTGTGTGTGCGTGGGC.....................................................................................................................................	18	42	0.05	0.02	0.00	0.02	0.00	0.00
...................................................................................................................................GAAGTCGACGCACGCCTC.......................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
................TGTGTGTGTGTGCGGGCA..........................................................................................................................................	18	15	0.07	0.00	0.00	0.00	0.07	0.00
..............TGCGTGCGTGTGTGCGTGCG..........................................................................................................................................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
.............ATGTGTGTGCGTGTGCGTG............................................................................................................................................	19	41	0.02	0.00	0.00	0.02	0.00	0.00
.................GTGCGTGTGTGCGTGTGTGC.......................................................................................................................................	20	28	0.04	0.00	0.00	0.04	0.00	0.00
...............GTGTGTGCGTGTGCGTGCT..........................................................................................................................................	19	7	0.14	0.00	0.14	0.00	0.00	0.00
..............TGTGTGAGTGTGTGCGCGC...........................................................................................................................................	19	2	0.50	0.00	0.00	0.00	0.50	0.00
..............TGTGTGAGCGTGTGCGTGC...........................................................................................................................................	19	4	0.25	0.00	0.00	0.25	0.00	0.00
................TGTGTGTGTGTGCGTGCGAG........................................................................................................................................	20	20	0.05	0.05	0.00	0.00	0.00	0.00
..................TGTGTGTGTGCGTGTGTACG......................................................................................................................................	20	24	0.04	0.04	0.00	0.00	0.00	0.00
....................TGTGTGTGTGTGCGTGCGAG....................................................................................................................................	20	20	0.05	0.05	0.00	0.00	0.00	0.00
....................CGTGCGTGCGTGCGTGCG......................................................................................................................................	18	4	0.25	0.00	0.25	0.00	0.00	0.00
.............ATGTGTGTGTGTGTGCGT.............................................................................................................................................	18	40	0.03	0.00	0.03	0.00	0.00	0.00
...................................................................................................................................GAAGTCGACGCACGCCTCT......................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.............ATGTGTGTGTGTGTGCGTGCG..........................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................................................................................AT	20	33	0.03	0.03	0.00	0.00	0.00	0.00
.........TTCAATGTGTGTGTGTGT.................................................................................................................................................	18	14	0.07	0.00	0.07	0.00	0.00	0.00
..................TCTGTGTGTGCGTGCGTGTGC.....................................................................................................................................	21	8	0.13	0.13	0.00	0.00	0.00	0.00
..................TGTGTGTGTGCGTGCGTGT.......................................................................................................................................	19	13	0.08	0.08	0.00	0.00	0.00	0.00
................TGTACGTGTGTGCGTGCGTGC.......................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................................................................................................TTTTTTTTGTTCGTGAAC............................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...................GTGTGTGTGCGCGAGTG........................................................................................................................................	17	34	0.03	0.00	0.03	0.00	0.00	0.00
...........................................................................................................................TGAACGCCGAAGTCGACGCACGCCTC.......................	26	1	1.00	0.00	0.00	0.00	0.00	1.00
............CATGTGTGTGTGTGTGCGTG............................................................................................................................................	20	46	0.02	0.02	0.00	0.00	0.00	0.00
.........................................................................................................................................................................CAA	26	27	0.04	0.04	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTGCGCGCA..........................................................................................................................................	20	11	0.09	0.00	0.09	0.00	0.00	0.00
...........................................................................................................................................................................C	21	2	0.50	0.50	0.00	0.00	0.00	0.00
..........TGAATGTGTGTGTGTGCG................................................................................................................................................	18	31	0.03	0.00	0.03	0.00	0.00	0.00
..........................................................................................................................................................................AT	20	35	0.03	0.03	0.00	0.00	0.00	0.00
..........................................................................................................................................................................AC	26	14	0.07	0.07	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTGCGTGAG..........................................................................................................................................	20	11	0.09	0.09	0.00	0.00	0.00	0.00
..............TGTGCGTGTGTGTGAGTGCGT.........................................................................................................................................	21	15	0.07	0.00	0.07	0.00	0.00	0.00
.................GTGCGTGCGTGCGTGCGTGC.......................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
..........TGCATGTGTGTGTGTGTG................................................................................................................................................	18	19	0.05	0.05	0.00	0.00	0.00	0.00
...............GTGTGTGTGTGTGCGTGCG..........................................................................................................................................	19	18	0.06	0.00	0.06	0.00	0.00	0.00
..................TGTGTGAGCGCGTGCGTGCG......................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.............ATGTGTGCGTGTGTGTGTGC...........................................................................................................................................	20	45	0.02	0.02	0.00	0.00	0.00	0.00
..........TGTATGTGTGTGTGTGTGCGTGC...........................................................................................................................................	23	19	0.05	0.05	0.00	0.00	0.00	0.00
.......................GTGTGCGTGCGTATGCGT...................................................................................................................................	18	5	0.20	0.00	0.00	0.20	0.00	0.00
...........................................................................................................................................................................A	22	25	0.04	0.00	0.00	0.04	0.00	0.00
..............TGTGTGTGTGTGTGGGCGC...........................................................................................................................................	19	39	0.03	0.03	0.00	0.00	0.00	0.00
..................TATGTGTGTGCGTGCGAGCG......................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.............ATGTGGGTGTGTGTGCGTGTG..........................................................................................................................................	21	24	0.04	0.04	0.00	0.00	0.00	0.00
...........................................................................................................................................................................A	20	18	0.06	0.06	0.00	0.00	0.00	0.00
...............GTGTGTGTGTGTTCGTGAGT.........................................................................................................................................	20	11	0.09	0.09	0.00	0.00	0.00	0.00
.......................GTGTTTGTGCGTGCGCGTT..................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.............ATGTGTGTGTGTGTGAGTGG...........................................................................................................................................	20	35	0.03	0.03	0.00	0.00	0.00	0.00
...............GTCTGTGTGTGTGCGTGA...........................................................................................................................................	18	17	0.06	0.06	0.00	0.00	0.00	0.00
..............TATGTGTGTGTGCGCGTG............................................................................................................................................	18	43	0.02	0.00	0.02	0.00	0.00	0.00
................TGTGCGTGCGTGCGTGCGTGC.......................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.............AAGTGTGTGCGTGTGCGTG............................................................................................................................................	19	10	0.10	0.00	0.00	0.10	0.00	0.00
..........TTGCTGTGTGTGTGTGT.................................................................................................................................................	17	42	0.02	0.00	0.02	0.00	0.00	0.00
...................................................................................................................................GAAGTCGACGCACGCCTCTCG....................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................CATGTGTGTGCGTGCGTGC.......................................................................................................................................	19	2	0.50	0.00	0.00	0.50	0.00	0.00
.........TTGAATGTGTGTGTGTGTGCT..............................................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00	0.00
.............ATGTGTTTGTGTGTGTGTGCG..........................................................................................................................................	21	27	0.04	0.04	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGCGTGCG......................................................................................................................................	19	18	0.06	0.00	0.06	0.00	0.00	0.00
...............GTGTGTGTGTGTGCGTGCTA.........................................................................................................................................	20	11	0.09	0.00	0.09	0.00	0.00	0.00
...............GTGTGTGTGTGTGCGTGA...........................................................................................................................................	18	14	0.07	0.00	0.07	0.00	0.00	0.00
......................TGTATGCGTGCGTGTGCGT...................................................................................................................................	19	5	0.20	0.20	0.00	0.00	0.00	0.00
..................................................................................................................................CGAAGTCGACGCACGCCTC.......................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.............ATGTGTGTGTCTGTGCCTG............................................................................................................................................	19	3	0.33	0.00	0.00	0.33	0.00	0.00
..............TGTATGTGTGTGTGTGTGCGTGC.......................................................................................................................................	23	19	0.05	0.05	0.00	0.00	0.00	0.00
.............ATGTGTGTGTGTGTGCTTGTG..........................................................................................................................................	21	27	0.04	0.00	0.00	0.04	0.00	0.00
..........................................................................................................................................................................AC	22	5	0.20	0.00	0.00	0.20	0.00	0.00
..................TGTGTGTGCGCGTGTGTGC.......................................................................................................................................	19	29	0.03	0.03	0.00	0.00	0.00	0.00
........CGTGCATGTGTGTGTGTGTG................................................................................................................................................	20	31	0.03	0.03	0.00	0.00	0.00	0.00
..............TGTGTATGTGTGTGCGTGCA..........................................................................................................................................	20	10	0.10	0.00	0.10	0.00	0.00	0.00
..............TGTGTGTCTGTATGCGTGCGT.........................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................................................................................................................................................C	18	32	0.03	0.03	0.00	0.00	0.00	0.00
....................TGTGTGTGCGTGCGTGTG......................................................................................................................................	18	17	0.06	0.00	0.06	0.00	0.00	0.00
................TGTTTGTGTGTGCGTGCGT.........................................................................................................................................	19	16	0.06	0.06	0.00	0.00	0.00	0.00
.........................................................................................................................................................................CAT	20	46	0.02	0.02	0.00	0.00	0.00	0.00
...............GTGTGTGTGTGTGGGCGC...........................................................................................................................................	18	42	0.02	0.00	0.00	0.02	0.00	0.00
.............ATGTGTGTATGTGTGCTTG............................................................................................................................................	19	6	0.17	0.00	0.17	0.00	0.00	0.00
.....................GTGTGCGCGTGCGTGTG......................................................................................................................................	17	35	0.03	0.00	0.03	0.00	0.00	0.00
............CATGTGTGTGCGTGTGCGT.............................................................................................................................................	19	7	0.14	0.00	0.00	0.14	0.00	0.00
...................GTTTGTGTGCGTGCGTGT.......................................................................................................................................	18	23	0.04	0.00	0.04	0.00	0.00	0.00

scaffold_12472:426595-426712 +

36.21

G---------------------------------GCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA ACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTCTGAGAGCGAG---TGCAAAGTGCACAAAAGTTTTGCCA--AGCAAAAATGGCGACA----------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.............................TGTGTGTGTGTGTGTGTGTGT.............................................................................................................................	21	138	0.07	0.07	0.00	0.00	0.00	0.00
.......TGTGTGTGTGTGTGTGTGT.....................................................................................................................................................	19	183	0.02	0.00	0.02	0.00	0.00	0.00
...............TGTGTGTGTGTGTGTGTGTTTGT.........................................................................................................................................	23	115	0.03	0.00	0.00	0.03	0.00	0.00
....................GTGTGTGTGTGTGTGTGTGTG......................................................................................................................................	21	133	0.02	0.00	0.02	0.00	0.00	0.00
..........................................GTGTGTGTGTGTGTGTGTGTTC...............................................................................................................	22	24	0.13	0.00	0.08	0.04	0.00	0.00

scaffold_12875:19664811-19664898 -

35.92

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGT--AAAACGCATTTAATTGTTAA-CAGCAG----CAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GGTGTATGCCAGTGTGTGTGTGTGTGTGTGTGTGTG-----------TGTAGATAGCGTATCTAATGGTTACATTTTAGTGCATACAAACGTATCTAAT--------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...GTATGCGACTGTGTGTGTGTGT............................................................................................................................	22	3	2.00	1.00	0.00	1.00	0.00	0.00
...GTATGCGACTGTGTGTGTGT..............................................................................................................................	20	4	1.50	0.00	0.00	1.50	0.00	0.00
..........AGTGTGTTTGTGTGAGTG.........................................................................................................................	18	21	0.24	0.00	0.19	0.00	0.00	0.05
...GTATGCGACTGTGTGTGT................................................................................................................................	18	4	1.00	0.00	0.00	1.00	0.00	0.00
..........AGTGTGTGTGTGCGTGGG.........................................................................................................................	18	28	0.14	0.00	0.00	0.14	0.00	0.00
.....ATGCGACTGTGTGTGTGT..............................................................................................................................	18	5	0.40	0.00	0.00	0.40	0.00	0.00
........GCAGTGTGTGTGTGCGTG...........................................................................................................................	18	8	0.25	0.00	0.00	0.25	0.00	0.00
.....ATGCGACTGTGTGTGTGTGT............................................................................................................................	20	4	0.50	0.50	0.00	0.00	0.00	0.00
..........AGTGTGTGTGTGTGTGTGTGTGTGTG-----------......................................................................................................	26	80	0.03	0.03	0.00	0.00	0.00	0.00
.....................GTATGTGTGTGTGTG-----------TGGA..................................................................................................	19	47	0.02	0.00	0.00	0.02	0.00	0.00
.......................GTGTGTGTGTGTG-----------TGTCGAT...............................................................................................	20	32	0.03	0.03	0.00	0.00	0.00	0.00
.......GTCAATGTGTGTGTGTGT............................................................................................................................	18	23	0.04	0.04	0.00	0.00	0.00	0.00
....................TGTGTGTGTGTGTGTG-----------TGCA..................................................................................................	20	35	0.03	0.03	0.00	0.00	0.00	0.00
.........CAGTGTGTGTGTGCGTGGG.........................................................................................................................	19	2	0.50	0.00	0.00	0.50	0.00	0.00
....................TGTGTATGTGTGTGTG-----------CGTA..................................................................................................	20	37	0.03	0.03	0.00	0.00	0.00	0.00
.....................GTGTGTGTGTGTGTG-----------CGTAA.................................................................................................	20	39	0.03	0.03	0.00	0.00	0.00	0.00
.....................GTGTGTGTGTGTGTT-----------TGTTG.................................................................................................	20	33	0.03	0.03	0.00	0.00	0.00	0.00
.....................GTGTGTGTGTGTGTG-----------TGTTGC................................................................................................	21	28	0.04	0.04	0.00	0.00	0.00	0.00
.........CATTGTATGTGTGTGTGTGTGT......................................................................................................................	22	4	0.25	0.25	0.00	0.00	0.00	0.00
.....ATGCTCGTGTGTGTGTGTGTG...........................................................................................................................	21	5	0.20	0.00	0.00	0.20	0.00	0.00
........CAAGTGTGTGTGTGTGTGTGTGTGTG...................................................................................................................	26	27	0.04	0.04	0.00	0.00	0.00	0.00
.........CAGTGTGTCTGTGTGTGCGTGTGTGT..................................................................................................................	26	2	0.50	0.50	0.00	0.00	0.00	0.00
..................TGTGTGTGTGTGAGTGTG-----------TGTA..................................................................................................	22	16	0.06	0.06	0.00	0.00	0.00	0.00
......TACGAGTGTGTGTGTGTGT............................................................................................................................	19	44	0.02	0.00	0.00	0.02	0.00	0.00
..........AGTGTGCGTGCGTGTGTG.........................................................................................................................	18	30	0.03	0.00	0.00	0.03	0.00	0.00
.......................GTATGTGTGTGTG-----------TGTGGA................................................................................................	19	47	0.02	0.00	0.00	0.02	0.00	0.00
....................TGTGTGTGTGTGTGTG-----------TGTTG.................................................................................................	21	18	0.06	0.06	0.00	0.00	0.00	0.00
....TATGxCAGTGTGTGTGCGTGT............................................................................................................................	20	7	0.14	0.00	0.14	0.00	0.00	0.00
..........AATGTGTGTGTGTGTGTGTGT......................................................................................................................	21	30	0.03	0.03	0.00	0.00	0.00	0.00
...GTATTCGAGTGTGTGTGTGT..............................................................................................................................	20	5	0.20	0.20	0.00	0.00	0.00	0.00
.........CAATGTGTGCGTGTGTGTG.........................................................................................................................	19	14	0.07	0.07	0.00	0.00	0.00	0.00
....................TGTGTGTGCGTGTGTG-----------TGTACA................................................................................................	22	17	0.06	0.06	0.00	0.00	0.00	0.00
....................TGTGTGTGTGCGTGTG-----------TGTA..................................................................................................	20	20	0.05	0.00	0.05	0.00	0.00	0.00
...GTATGCCTGTGTGTGTGT................................................................................................................................	18	17	0.06	0.00	0.00	0.06	0.00	0.00
......TGCTAGTGTGTGTGTGTGA............................................................................................................................	19	5	0.20	0.00	0.00	0.20	0.00	0.00
....................TGTGTGTGTGTGTGTT-----------TGTAA.................................................................................................	21	35	0.03	0.03	0.00	0.00	0.00	0.00
....TATGCGAGTGTTTGTGTG...............................................................................................................................	18	6	0.17	0.00	0.00	0.00	0.00	0.17
..........AGTGTGTTTGTGTGAGTGTG.......................................................................................................................	20	18	0.06	0.06	0.00	0.00	0.00	0.00
..................TGTGTGTGTGTGTGTGTG-----------TGTTG.................................................................................................	23	13	0.08	0.00	0.00	0.08	0.00	0.00
.TTGTATGCCTGTGTGTGTG.................................................................................................................................	19	3	0.33	0.00	0.00	0.33	0.00	0.00
.....................GTGTGTGTGTGCGTG-----------TGTA..................................................................................................	19	19	0.05	0.05	0.00	0.00	0.00	0.00
.....................GTGTCTGTGTGTGTG-----------TGTTG.................................................................................................	20	21	0.05	0.05	0.00	0.00	0.00	0.00
.....................GTGTGTGTGTGTGTG-----------TGTTG.................................................................................................	20	18	0.06	0.06	0.00	0.00	0.00	0.00
.....................GTGTGTGTGTGTxTG-----------TGTAGAA...............................................................................................	21	3	0.33	0.00	0.00	0.00	0.33	0.00
.......GCCACTGTGTGTGTGTGTGTGTGT......................................................................................................................	24	5	0.20	0.00	0.00	0.20	0.00	0.00
..................TGTGTGTGTGTGTGAGTG-----------TGAA..................................................................................................	22	25	0.04	0.04	0.00	0.00	0.00	0.00
..........AGTGTGCTTGTGTGTGTGTG.......................................................................................................................	20	17	0.06	0.00	0.00	0.06	0.00	0.00
.....................GTGTGTGTGTGTGTC-----------TGTA..................................................................................................	19	18	0.06	0.06	0.00	0.00	0.00	0.00
.......GCCAGTGTGAGTGTGAGTG...........................................................................................................................	19	2	0.50	0.00	0.50	0.00	0.00	0.00
..................TGTGTATGTATGTGTGTG-----------TGTA..................................................................................................	22	25	0.04	0.04	0.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGTGTG-----------CCTA..................................................................................................	28	12	0.08	0.08	0.00	0.00	0.00	0.00
.....................GTGTGTGTGTGTGTG-----------TGTCGC................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
....................TGTGTGTGTGTGTGTG-----------TGTGGAC...............................................................................................	23	38	0.03	0.03	0.00	0.00	0.00	0.00
.....................GTGTGTGTGTGTGTG-----------TGCA..................................................................................................	19	40	0.03	0.03	0.00	0.00	0.00	0.00
...GTATGCATGTGTGTGTGTGTG.............................................................................................................................	21	21	0.05	0.05	0.00	0.00	0.00	0.00
..................TGTGTGTGTGTGTGTGTG-----------TGGAC.................................................................................................	23	38	0.03	0.03	0.00	0.00	0.00	0.00
..........AGTGTCCGTGTGTGTGTG.........................................................................................................................	18	23	0.04	0.00	0.04	0.00	0.00	0.00
......................TGTGTGTGTGTTTG-----------TGTAGTT...............................................................................................	21	4	0.25	0.25	0.00	0.00	0.00	0.00
..........AATGTGTGTATGTGTGTGTG.......................................................................................................................	20	46	0.02	0.02	0.00	0.00	0.00	0.00
.......................GTGTGTGTGTGTG-----------TGTAGC................................................................................................	19	48	0.02	0.00	0.00	0.02	0.00	0.00
.....ATAGCAGTGTGTGTGTGT..............................................................................................................................	18	5	0.20	0.20	0.00	0.00	0.00	0.00
...GTATGCGACTGTGTGTGTG...............................................................................................................................	19	4	0.25	0.00	0.00	0.25	0.00	0.00
.....ATGxCAGTGTGTGTGCGTGTGTGT........................................................................................................................	23	7	0.14	0.14	0.00	0.00	0.00	0.00
........CGAGTGTGTGTGTGAGTG...........................................................................................................................	18	32	0.03	0.03	0.00	0.00	0.00	0.00
.......GCGAGAGTGTGTGTGTGT............................................................................................................................	18	24	0.04	0.00	0.00	0.04	0.00	0.00
..................TGTGTGTGTGTGTGTGTG-----------TGGTG.................................................................................................	23	25	0.04	0.00	0.00	0.04	0.00	0.00
........ACAGTGTGTGTGTGTGAGTGTGT......................................................................................................................	23	6	0.17	0.17	0.00	0.00	0.00	0.00
..........AGTGTGTGTGTGTGAGTGTGTT.....................................................................................................................	22	25	0.04	0.00	0.00	0.04	0.00	0.00
.....................GTGGGGGTGTGTGTG-----------TGTA..................................................................................................	19	16	0.06	0.06	0.00	0.00	0.00	0.00
..........AGTGTGTGTGTGTGTGAGG........................................................................................................................	19	28	0.04	0.04	0.00	0.00	0.00	0.00
.......................ATCTGTGTGTGTG-----------TGTAG.................................................................................................	18	27	0.04	0.00	0.04	0.00	0.00	0.00
........CTAGTATGTGTGTGTGTGTGT........................................................................................................................	21	12	0.08	0.08	0.00	0.00	0.00	0.00

scaffold_13049:2350800-2350917 +

34.43

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GATATATATAAATGCAAGTGTGCGAGTGTGCGAGTGGGTCTGTGTCTGTGTGTGTGTTTGCGT---------GTGTGGAGAAGGTGTATATGTAAGC---------------TGGGCTGCGATGAGTGTTCGATTCTGGGAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................................................CGCGT---------GTGTGAAGAAGGT.........................................................	18	1	100.00	18.00	73.00	8.00	0.00	1.00
...........................................................GCGT---------GTGTGAAGAAGGTT........................................................	18	1	18.00	5.00	13.00	0.00	0.00	0.00
...........................................................GCGT---------GTGTGAAGAAGGT.........................................................	17	1	11.00	0.00	11.00	0.00	0.00	0.00
............................................................CGT---------GTGTGAAGAAGGTTT.......................................................	18	1	4.00	0.00	2.00	2.00	0.00	0.00
................................................TGCGTGTGCTTGCGT---------GTGTG.................................................................	20	4	1.00	0.00	0.75	0.25	0.00	0.00
..........................................................CGCGT---------GTGTGAAGAAGG..........................................................	17	1	3.00	0.00	3.00	0.00	0.00	0.00
...............................................GTGCGTGTGCTTGCGT---------GTGTG.................................................................	21	4	0.75	0.25	0.00	0.50	0.00	0.00
...........................................................GCGT---------GTGTGAAGAAGGTTT.......................................................	19	1	2.00	0.00	1.00	1.00	0.00	0.00
..............................................CGTGCGTGTGTTTGCGT---------GTG...................................................................	20	2	0.50	0.00	0.50	0.00	0.00	0.00
..................................................TGTATGTTTACGT---------GTGTGG................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................................GTATGTTTACGT---------GTGTGGA...............................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................TCTATGTGTGTGTTTGCGT---------......................................................................	19	3	0.33	0.33	0.00	0.00	0.00	0.00
..........................TGTGGGTGTGGGTCTGTG..................................................................................................	18	7	0.14	0.14	0.00	0.00	0.00	0.00
...........................................................GCGT---------GAGTGCAGAAGGT.........................................................	17	1	1.00	0.00	1.00	0.00	0.00	0.00
................................................TGTGTGTGTCTGCGA---------GTG...................................................................	18	19	0.05	0.00	0.05	0.00	0.00	0.00
.......................................CTGTGTGCGTGTGTGTGTT....................................................................................	19	32	0.03	0.03	0.00	0.00	0.00	0.00
.....................................GTATGAGTCTGTGTGTGTG......................................................................................	19	10	0.10	0.00	0.10	0.00	0.00	0.00
......................................TCTGTGTCTGTGTCTGTGTGT...................................................................................	21	13	0.08	0.08	0.00	0.00	0.00	0.00
...............................................GTGCGTGTGTTTGCGT---------GTGTGC................................................................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
...............................................GTGCGTGTGCTTGCGT---------GTG...................................................................	19	5	0.20	0.00	0.20	0.00	0.00	0.00
................................................TGTGTGTGTTTGCAT---------GTGT..................................................................	19	17	0.06	0.06	0.00	0.00	0.00	0.00
.............................................CTCTGTGTGTGTTTGTGT---------GT....................................................................	20	21	0.05	0.05	0.00	0.00	0.00	0.00
..............................................TGTGTGTGTGTTTTCGC---------G.....................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
................................................TGTGTATGTTTACGT---------GTGT..................................................................	19	2	0.50	0.50	0.00	0.00	0.00	0.00
...........................................................GCGT---------GTGTGAATAAGGT.........................................................	17	1	1.00	0.00	1.00	0.00	0.00	0.00
................................................TGCGTGTGCTTGCGT---------GTG...................................................................	18	5	0.20	0.00	0.20	0.00	0.00	0.00
........................................TGTGTATGTGCGTGTGTTTGC.................................................................................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
...................GTGCGAGTGTGAGAGCGGG........................................................................................................	19	2	0.50	0.00	0.50	0.00	0.00	0.00
...........................................................GCGT---------GTGCGGAGACGGT.........................................................	17	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................GTATGGGTCTGTGTGTGTGT.....................................................................................	20	9	0.11	0.00	0.00	0.11	0.00	0.00
...............AAGTGTGCGAGTGTGTGT.............................................................................................................	18	11	0.09	0.00	0.00	0.09	0.00	0.00
..........................................................TGCGA---------GTGTGAAGAAGGT.........................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................GCGG---------GTGTGGAGAAGGTT........................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
......................................TATGTGTCTGTGTGTGTGTC....................................................................................	20	29	0.03	0.03	0.00	0.00	0.00	0.00
..........................................................CGCGT---------GTGTGTAGAAGGT.........................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................GTGTGAGAGTxGGTCTGT...................................................................................................	17	2	0.50	0.00	0.50	0.00	0.00	0.00
..........................................TGTCTGTGTGTGTGTCTG..................................................................................	18	264	0.00	0.00	0.00	0.00	0.00	0.00
...............................GCGTGGGTGTGTGTCTGT.............................................................................................	18	15	0.07	0.00	0.00	0.07	0.00	0.00
...........................GTGCGAGAGGGTxTGTGTC................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................TCTGAGTATGTGTGTGTGT.....................................................................................	19	17	0.06	0.00	0.00	0.00	0.00	0.06
........................................TGTGGATGTGTGTGTGTT....................................................................................	18	23	0.04	0.00	0.04	0.00	0.00	0.00
...........................................................GCGT---------GTGTGGAGAAGGTTTT......................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................CTGTGTGTGAGTTTGCTT---------G.....................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................................ATGCGTCTGTGTGTGTGT.....................................................................................	18	44	0.02	0.00	0.00	0.02	0.00	0.00
................................................TGTGTGTGATTGCGT---------GTGTG.................................................................	20	6	0.17	0.17	0.00	0.00	0.00	0.00
........................................TGTGTCTGTCTTTGTGT.....................................................................................	17	11	0.09	0.00	0.09	0.00	0.00	0.00
................................................TGCGTGTGCTTGCGT---------GTGT..................................................................	19	4	0.25	0.00	0.25	0.00	0.00	0.00

scaffold_13049:119240-119331 +

32.52

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTT--------TCTACATC-TCACTTACAGTTAGTAATCAAATTGCACAA ATTTAGAAGTTAAGCGCGAATT-----------------------------------------------------------GTATGTATTATTTAAATTTCTGTTCAATAAGTTTACATTAAAAAAAAAAAACAAAAATAAAACAAAAAAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...........................................................................................................................AAAAAAACACAAAAACAAAAC.......	21	5	0.20	0.00	0.20	0.00	0.00	0.00
.............................................................................................................................AAAAAAACAAAAGAAAAACAA.....	21	11	0.09	0.00	0.09	0.00	0.00	0.00
........................................................................................................................AAAAAAAAAAAACAAAACAAAAACA......	25	12	0.08	0.00	0.08	0.00	0.00	0.00

103

scaffold_12928:7480681-7480755 -

30.25

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTG---TGCTTTCATTATG-------CATTGTACATTGTAGCCGAGTCGT---------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................GTG---TGCTTTTATTATG-------CT...............................................................................	18	1	27.00	0.00	1.00	26.00	0.00	0.00
...............GTGTGTGTGTGTGTGTGTG............................................................................................................	19	177	0.05	0.05	0.00	0.00	0.00	0.00
....................AGTGTGTTTGTGTGAGTG---.....................................................................................................	18	21	0.24	0.00	0.19	0.00	0.00	0.05
...GTGTGTGTGTGTGTGTGTGTGTGTG..................................................................................................................	25	78	0.04	0.04	0.00	0.00	0.00	0.00
.....................GTGTGTGCGTGTTAGTG---T....................................................................................................	18	15	0.13	0.00	0.00	0.13	0.00	0.00
.......................GTGTGTGTGTGCGTG---GGC..................................................................................................	18	42	0.05	0.02	0.00	0.02	0.00	0.00
....TGTGTGTGTGTGTGTGTGTGTGTGTG................................................................................................................	26	68	0.03	0.03	0.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGCCA...........................................................................................................	23	31	0.03	0.00	0.00	0.03	0.00	0.00
.................GTGTGTGTGTGTGCGTGA...........................................................................................................	18	14	0.07	0.00	0.07	0.00	0.00	0.00
...............GTGTGTGTGTGTGTGCGTAA...........................................................................................................	20	39	0.03	0.03	0.00	0.00	0.00	0.00
....................TGTGTGTGTGTGTGAGTG---TGAA.................................................................................................	22	25	0.04	0.04	0.00	0.00	0.00	0.00
........................TGTGTGTGTGAGAG---TGCAT................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGCGAGG.........................................................................................................	20	18	0.06	0.06	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGTGACTG---TGCT.................................................................................................	23	3	0.33	0.00	0.00	0.00	0.33	0.00
....................TGTGTGTGTGTGTGAGTG---TTTT.................................................................................................	22	23	0.04	0.00	0.04	0.00	0.00	0.00
..........TGTGTGTGTGTGTGTGTGTGTGTGA...........................................................................................................	25	97	0.01	0.01	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTTCGTGAGT.........................................................................................................	20	11	0.09	0.09	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGCGTGCGAG..........................................................................................................	20	20	0.05	0.05	0.00	0.00	0.00	0.00
................TCTGTGTGTGTGTGTGTGAGTT---.....................................................................................................	22	17	0.06	0.06	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTGAGTGTGAA..........................................................................................................	22	25	0.04	0.04	0.00	0.00	0.00	0.00
...............GCGTGTGTGTGTGTGTGTGAGC.........................................................................................................	22	21	0.05	0.00	0.00	0.05	0.00	0.00
...............GTGTGTGTGCGTGTGTGTGAGTG---T....................................................................................................	24	105	0.01	0.00	0.00	0.01	0.00	0.00
................TGTGTTTATGTGTGTGTGA...........................................................................................................	19	13	0.08	0.08	0.00	0.00	0.00	0.00
.......................TTGTGTGTGTGAGTG---TCC..................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25	0.00
....................TGTGTGTGTGTGTGTGTG---TGCT.................................................................................................	22	25	0.04	0.04	0.00	0.00	0.00	0.00
......................TGTGTGTGTGTGATTG---TGC..................................................................................................	19	28	0.04	0.04	0.00	0.00	0.00	0.00
..................TGTGTGTGTGTGTGTGAC..........................................................................................................	18	321	0.00	0.00	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTATGAGTT---T....................................................................................................	20	13	0.08	0.08	0.00	0.00	0.00	0.00
.................GTGAGTGTGTTTGTGTGAGT.........................................................................................................	20	5	0.20	0.20	0.00	0.00	0.00	0.00
.....................GTATGTGTGTGTGAGTG---TGA..................................................................................................	20	18	0.06	0.00	0.00	0.06	0.00	0.00
..................AGTGTGTGTGTGTGTGAGG.........................................................................................................	19	28	0.04	0.04	0.00	0.00	0.00	0.00
......................TGTGTGTGAGTGAGTG---GG...................................................................................................	18	15	0.07	0.07	0.00	0.00	0.00	0.00
................TGTGTGTGTGTTTGTGTGAG..........................................................................................................	20	187	0.01	0.01	0.00	0.00	0.00	0.00
......................TGTGTGTGTGTGTGTT---TGCTTT...............................................................................................	22	7	0.14	0.00	0.14	0.00	0.00	0.00
........................TGTGTGTGTGACTG---TGCC.................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25	0.00
.................GTGTGTGTGTGTGTATCAGTG---.....................................................................................................	21	11	0.09	0.09	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGTGACTG---TGCG.................................................................................................	23	11	0.09	0.09	0.00	0.00	0.00	0.00
....................TGTGTGTGTGTGCGAGTG---T....................................................................................................	19	14	0.07	0.07	0.00	0.00	0.00	0.00
......................TGTGTGTGTGTGAGTG---TG...................................................................................................	18	223	0.00	0.00	0.00	0.00	0.00	0.00
...............GTGTGTGCGTGTGTGTGTTAGT.........................................................................................................	22	11	0.09	0.09	0.00	0.00	0.00	0.00
................TGTGTGTGGGTGTGTGTGAGC.........................................................................................................	21	20	0.05	0.00	0.05	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGGGCGTGA...........................................................................................................	23	9	0.11	0.00	0.11	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTTA...........................................................................................................	19	23	0.04	0.00	0.04	0.00	0.00	0.00
....................TGTGTGTGTGTGCGAGTG---.....................................................................................................	18	17	0.06	0.06	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGCGAGTG---TG...................................................................................................	21	10	0.10	0.00	0.00	0.10	0.00	0.00
...............GTATGTGTGTGTGAGTGTGA...........................................................................................................	20	18	0.06	0.00	0.00	0.06	0.00	0.00
.....................GTGAGTGTGTGAGAGTG---T....................................................................................................	18	15	0.07	0.07	0.00	0.00	0.00	0.00
....................AGTGTGTTTGTGTGAGTG---TG...................................................................................................	20	18	0.06	0.06	0.00	0.00	0.00	0.00
......................TGTGTGTGTATCAGTG---TG...................................................................................................	18	12	0.08	0.00	0.08	0.00	0.00	0.00
...................ATGTGTGTGTGAGTGAGTG---T....................................................................................................	20	33	0.03	0.03	0.00	0.00	0.00	0.00
...................GTGTGTGAGTGCGTGAGTG---TG...................................................................................................	21	10	0.10	0.10	0.00	0.00	0.00	0.00
.................GTCTGTGTGTGTGCGTGA...........................................................................................................	18	17	0.06	0.06	0.00	0.00	0.00	0.00
......................TGTGTGTGTGTGTGTG---TGCTTTT..............................................................................................	23	18	0.06	0.06	0.00	0.00	0.00	0.00
...........ATATGTGTGTGTGTGTGTGTGTGAGT.........................................................................................................	26	33	0.03	0.03	0.00	0.00	0.00	0.00
.....................GAGTGTGAGTGTGAGTG---.....................................................................................................	17	26	0.04	0.00	0.04	0.00	0.00	0.00
..................TGTGTGTGTGTGTGTGTGTG---TGCT.................................................................................................	24	16	0.06	0.00	0.06	0.00	0.00	0.00
.....................GTTTGTGTxTGTGAGTG---TGC..................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTCTGTGTTA...........................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
..................TGTGTGTGTGTGTGCGAGTG---.....................................................................................................	20	13	0.08	0.08	0.00	0.00	0.00	0.00
...................GAGTGTGTTTGTGTGAGTG---.....................................................................................................	19	11	0.09	0.09	0.00	0.00	0.00	0.00
....................TGTGTGTGTCTGCGAGTG---.....................................................................................................	18	19	0.05	0.00	0.05	0.00	0.00	0.00
....................CGAGTGTGTGTGTGAGTG---.....................................................................................................	18	32	0.03	0.03	0.00	0.00	0.00	0.00
.....................GTATGTGTGTGTGTGTG---TGCT.................................................................................................	21	39	0.03	0.00	0.00	0.03	0.00	0.00
.....................GTGTGTGTGCGCGAGTG---.....................................................................................................	17	34	0.03	0.00	0.03	0.00	0.00	0.00
.......................GTGTGTGTGTGAGTG---TTGTTT...............................................................................................	21	5	0.20	0.20	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTGTGTGAGTG---TG...................................................................................................	26	75	0.01	0.01	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTTTGTAA...........................................................................................................	21	35	0.03	0.03	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGTGCGTGAG..........................................................................................................	20	11	0.09	0.09	0.00	0.00	0.00	0.00
.......................GTGTGTGTGTGCGTG---TGTTTT...............................................................................................	21	29	0.03	0.03	0.00	0.00	0.00	0.00
...................ATGTGTGTGTGTGTGAGTG---G....................................................................................................	20	35	0.03	0.03	0.00	0.00	0.00	0.00
......................TGTGGATGTGTGAGTG---TG...................................................................................................	18	15	0.07	0.07	0.00	0.00	0.00	0.00
.............TTGTGTGTGTGTGTGTGTGCGA...........................................................................................................	22	19	0.05	0.00	0.00	0.05	0.00	0.00
......................TGTGTGTGTTTGTGTG---TGCT.................................................................................................	20	36	0.03	0.03	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGAGTGTGAGTG---TGCG.................................................................................................	26	8	0.13	0.13	0.00	0.00	0.00	0.00
..................TGTGCGTGTGTGTGCGAGTG---.....................................................................................................	20	22	0.05	0.05	0.00	0.00	0.00	0.00
..................TGTGTGTGTGAGTGTTAGTG---T....................................................................................................	21	9	0.11	0.11	0.00	0.00	0.00	0.00
.......................GTGTGTGTGTGGGTG---TGGTT................................................................................................	20	11	0.09	0.09	0.00	0.00	0.00	0.00
..................TGTGAGAGTGTGTGTGAGT.........................................................................................................	19	12	0.08	0.00	0.08	0.00	0.00	0.00
...................GTCTGTGTGTGTGGGAGTG---TG...................................................................................................	21	8	0.13	0.00	0.13	0.00	0.00	0.00
......................TGTGTGTGTGTGAGTG---TTTTT................................................................................................	21	18	0.06	0.06	0.00	0.00	0.00	0.00
.......................GTGGGTGTGTGAGTG---TGCG.................................................................................................	19	16	0.06	0.06	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTGTGTGACA.........................................................................................................	23	22	0.05	0.05	0.00	0.00	0.00	0.00
.....................GTGTGCGTGTGTGATTG---T....................................................................................................	18	16	0.06	0.06	0.00	0.00	0.00	0.00
......................TGTGTGTGTGCGAGTG---TG...................................................................................................	18	17	0.06	0.00	0.00	0.00	0.06	0.00
...................GTGTGTGTGTGTGTAAGTG---CG...................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
...............GTGTGTGTGTGTGTCTGTGAC..........................................................................................................	21	15	0.07	0.00	0.00	0.07	0.00	0.00
...................GTGTATGCGTGTGTGAGTG---.....................................................................................................	19	16	0.06	0.06	0.00	0.00	0.00	0.00
.....................GTGTGTGTGTGTGAACG---TG...................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
....................TGTGTGCGTGTGTGTGTG---TGCT.................................................................................................	22	29	0.03	0.03	0.00	0.00	0.00	0.00
........................TGTGTGTGAGTGTG---TGCTT................................................................................................	19	29	0.03	0.00	0.00	0.00	0.03	0.00
....................TGCGTGTGCGTGTGAGTG---TG...................................................................................................	20	16	0.06	0.06	0.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGACA...........................................................................................................	23	22	0.05	0.05	0.00	0.00	0.00	0.00
....................AGTGTGTGTGTGTGAGTG---TGTT.................................................................................................	22	25	0.04	0.00	0.00	0.04	0.00	0.00
....................TCTGTGTGTGTGGGAGTG---.....................................................................................................	18	15	0.07	0.00	0.07	0.00	0.00	0.00

132

scaffold_13042:1260334-1260408 -

29.29

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTT-CTACATCTCACTTACAGTTAGTAATCAAATTGCACAA AGTCA-------------------------------------------------------------------GAACGTAAATTCCGTA-AATTTTTGTGATTCTTGGTAAATTTTGATTTTCGCCGGTAAAGAAAATAAAAAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..............................................................................................................................................A	18	21	0.24	0.00	0.19	0.00	0.00	0.05
..............................................................................................................................................A	18	28	0.14	0.00	0.00	0.14	0.00	0.00
.............................................................................................................................................AG	18	42	0.05	0.05	0.00	0.00	0.00	0.00
..............................................................................................................................................A	18	23	0.04	0.00	0.04	0.00	0.00	0.00
...........................................................................................................................................GAAG	18	28	0.04	0.04	0.00	0.00	0.00	0.00
..............................................................................................................................................A	20	17	0.06	0.00	0.00	0.06	0.00	0.00
..............................................................................................................................................A	20	18	0.06	0.06	0.00	0.00	0.00	0.00
.............................................................................................................................................AA	20	24	0.04	0.00	0.00	0.04	0.00	0.00
............................................................................................................................................CAA	26	27	0.04	0.04	0.00	0.00	0.00	0.00
.............................................................................................................................................AA	21	5	0.20	0.20	0.00	0.00	0.00	0.00
..............................................................................................................................................A	21	30	0.03	0.03	0.00	0.00	0.00	0.00
............................................................................................................................................AAT	20	46	0.02	0.02	0.00	0.00	0.00	0.00
..............................................................................................................................................A	22	25	0.04	0.00	0.00	0.04	0.00	0.00
.............................................................................................................................................AG	18	42	0.02	0.00	0.00	0.02	0.00	0.00
..............................................................................................................................................A	19	28	0.04	0.04	0.00	0.00	0.00	0.00
............................................................................................................................................ACA	23	6	0.17	0.17	0.00	0.00	0.00	0.00
............................................................................................................................................AAT	21	30	0.03	0.03	0.00	0.00	0.00	0.00
.............................................................................................................................................AA	20	7	0.14	0.14	0.00	0.00	0.00	0.00
.............................................................................................................................................AA	19	10	0.10	0.00	0.00	0.10	0.00	0.00
.............................................................................................................................................AA	20	5	0.20	0.00	0.00	0.20	0.00	0.00
..............................................................................................................................................A	20	46	0.02	0.02	0.00	0.00	0.00	0.00
.............................................................................................................................................AA	18	11	0.09	0.00	0.00	0.09	0.00	0.00
..........................................................................................................................................AATAA	19	5	0.20	0.00	0.20	0.00	0.00	0.00
..............................................................................................................................................A	18	30	0.03	0.00	0.00	0.03	0.00	0.00
...........................................................................................................................................AAAT	20	24	0.04	0.00	0.00	0.04	0.00	0.00

scaffold_12875:4725763-4725864 -

28.02

GGCGCG-CACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAA-AACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AGTGCAACAGTTTTACATAGATATT-ATATGAATTAAAATTCATTTT--GTGTGCCGCAGTCAGC-----GCCGCAGCATGCGGCATGCT-----------------------------TTAAAATA----GCA-ACAAGCCAA

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

110

scaffold_12963:570399-570453 -

27.14

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TGTGTGTG--TGTGTGTGTGTGTTATTGTTGTTGTG------------CTAAACCGCATATAATAATTA-------------------------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.GTGTGTG--TGTGTGTGTGTGT.......................................................................................................................	20	156	0.06	0.06	0.00	0.00	0.00	0.00
.GTGTGTG--TGTGTGTGTGTGTTC.....................................................................................................................	22	24	0.13	0.00	0.08	0.04	0.00	0.00
...GTGTG--TGTGTGTGTGTGTT......................................................................................................................	19	217	0.01	0.00	0.00	0.00	0.00	0.00
...........GTGTGTGCGTGTTAGTGT.................................................................................................................	18	15	0.13	0.00	0.00	0.13	0.00	0.00
..........TGTGTGTGTGTGTATTTGTTG...............................................................................................................	21	4	0.50	0.50	0.00	0.00	0.00	0.00
..TGTGTG--TGTGTTTGTGTGTTC.....................................................................................................................	21	29	0.03	0.03	0.00	0.00	0.00	0.00
...GTGTG--TGTGTGTGCGTGCTA.....................................................................................................................	20	11	0.09	0.00	0.09	0.00	0.00	0.00
......TG--TGTGTGTGTGTGTTAGTGT.................................................................................................................	21	163	0.01	0.00	0.01	0.00	0.00	0.00
....TGCG--TGTGTGTGTGTGTTTT....................................................................................................................	20	34	0.03	0.00	0.03	0.00	0.00	0.00
..TGTGTG--TGTGTGTGAGTGTTTT....................................................................................................................	22	23	0.04	0.00	0.04	0.00	0.00	0.00
...GTGTG--TGTGTGTGCTTGTT......................................................................................................................	19	32	0.03	0.00	0.00	0.03	0.00	0.00
..TGCGTG--TGTGTGTGTGTTTT......................................................................................................................	20	34	0.03	0.00	0.03	0.00	0.00	0.00
AGTGTGTG--TGTGTGAGTGTGTT......................................................................................................................	22	25	0.04	0.00	0.00	0.04	0.00	0.00
TGTGTGTG--TGTCTGTGTGTGTTCTT...................................................................................................................	25	3	0.33	0.00	0.00	0.00	0.00	0.33
..............TATGTGTGTTATTGTTGTT.............................................................................................................	19	3	0.33	0.00	0.00	0.33	0.00	0.00
...GTGTG--TGTGTGCGTGTGTTTT....................................................................................................................	21	29	0.03	0.03	0.00	0.00	0.00	0.00
..TGTGTG--TGTGTGTGTGTGTTG.....................................................................................................................	21	18	0.06	0.06	0.00	0.00	0.00	0.00
.....GTG--TGTGTxCGAGTGTTAT....................................................................................................................	18	3	0.33	0.00	0.33	0.00	0.00	0.00
...GTGTG--TGTGTGTCTGTGTTGT....................................................................................................................	21	8	0.13	0.00	0.00	0.13	0.00	0.00
...CTGTG--TGCGTGTGTGTGTT......................................................................................................................	19	32	0.03	0.03	0.00	0.00	0.00	0.00
...GTGTG--TGTGTGTGTGTGTTTTTT..................................................................................................................	23	29	0.03	0.00	0.03	0.00	0.00	0.00
.GTGTGTG--TGTGTGTGTGTGTTTT....................................................................................................................	23	16	0.06	0.00	0.00	0.06	0.00	0.00
...GTGTG--TGTGTGTGTTTGTTG.....................................................................................................................	20	33	0.03	0.03	0.00	0.00	0.00	0.00
...TTGTG--TGTGTGTGTGTGTTTTT...................................................................................................................	22	18	0.06	0.00	0.00	0.06	0.00	0.00
TGTGTGTG--TGTGTGTGTGTGCCA.....................................................................................................................	23	31	0.03	0.00	0.00	0.03	0.00	0.00
.GTGTGTG--TGTGTGTGTGTTTTTT....................................................................................................................	23	29	0.03	0.00	0.03	0.00	0.00	0.00
...........GTGTGTGTGTGTGTTTGTTG...............................................................................................................	20	33	0.03	0.03	0.00	0.00	0.00	0.00
...GTGTG--TGCGTGTGTGTGTTAGT...................................................................................................................	22	11	0.09	0.09	0.00	0.00	0.00	0.00
....TGTG--TGTGTGTGTGTGTTC.....................................................................................................................	19	36	0.03	0.00	0.03	0.00	0.00	0.00
..TGTGTG--TGTGTGTGTATGGT......................................................................................................................	20	36	0.03	0.03	0.00	0.00	0.00	0.00
.GTGTGTG--TGTGCGTGTGTTTT......................................................................................................................	21	29	0.03	0.03	0.00	0.00	0.00	0.00
....TGTG--TGTGTGTGTGTGTTCTTC..................................................................................................................	22	6	0.17	0.17	0.00	0.00	0.00	0.00
...GTGTC--TGTGTGTGTGTGTTG.....................................................................................................................	20	21	0.05	0.05	0.00	0.00	0.00	0.00
...........GTGTGCGTGTGTGATTGT.................................................................................................................	18	16	0.06	0.06	0.00	0.00	0.00	0.00
....TGTG--TGTGTTGGTGTGTT......................................................................................................................	18	18	0.06	0.06	0.00	0.00	0.00	0.00
............TGTGTGTGTGTATTTGTTGT..............................................................................................................	20	6	0.17	0.17	0.00	0.00	0.00	0.00
..................AGTGTCATTGTTGTTGTG------------..............................................................................................	18	3	0.33	0.00	0.33	0.00	0.00	0.00
..TGTGTG--TGTGTGTCTGTGTTA.....................................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
TCTGTGTG--TGTGTGTGTGAGTT......................................................................................................................	22	17	0.06	0.06	0.00	0.00	0.00	0.00
...GTGGG--TGTGTGGGTGTGTT......................................................................................................................	19	16	0.06	0.06	0.00	0.00	0.00	0.00
....TGAG--TGTGTGTGTGTGGTA.....................................................................................................................	19	10	0.10	0.10	0.00	0.00	0.00	0.00
...GTGTG--TGTGTGTGTGTGTTGC....................................................................................................................	21	28	0.04	0.04	0.00	0.00	0.00	0.00
...GTGTG--TGTGTGTGTGCGTAA.....................................................................................................................	20	39	0.03	0.03	0.00	0.00	0.00	0.00
....TGTG--GATGTGTGTGTGTT......................................................................................................................	18	23	0.04	0.00	0.04	0.00	0.00	0.00
....TGTG--TGTGTGTGAGTGTTTTT...................................................................................................................	21	18	0.06	0.06	0.00	0.00	0.00	0.00
......TG--TGTGTGTGAGTGTTAGTGT.................................................................................................................	21	9	0.11	0.11	0.00	0.00	0.00	0.00
TGTGTGTG--TGTGTGTGTGTGGT......................................................................................................................	22	15	0.07	0.00	0.07	0.00	0.00	0.00
...GTGTG--TGTGTGTGTGTGTTTT....................................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
TGTGTGTG--TGTGTGAGTGTTTT......................................................................................................................	22	23	0.04	0.00	0.04	0.00	0.00	0.00
.GTGTGTG--TGTGTGTGTGTGAT......................................................................................................................	21	204	0.00	0.00	0.00	0.00	0.00	0.00
TGTGTGCG--TGTGTGTGTGTGCT......................................................................................................................	22	29	0.03	0.03	0.00	0.00	0.00	0.00
TGTGTGTG--TGTGTGTGTGTCTT......................................................................................................................	22	11	0.09	0.09	0.00	0.00	0.00	0.00
TGTGTGTG--TGTGTGTGGTTGTT......................................................................................................................	22	14	0.07	0.00	0.00	0.07	0.00	0.00
.GTATGTG--TGTGTGTGTGTGCT......................................................................................................................	21	39	0.03	0.00	0.00	0.03	0.00	0.00
......CG--TGTGTGTGTGTGTTTTT...................................................................................................................	19	29	0.03	0.03	0.00	0.00	0.00	0.00
TGTGTGTG--TGTGTGTGTGTGCT......................................................................................................................	22	25	0.04	0.04	0.00	0.00	0.00	0.00
.GTGTGTG--TGTGTGTGTGTTTT......................................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
.....GTG--TGTGTGTGTGTGTTTT....................................................................................................................	19	32	0.03	0.03	0.00	0.00	0.00	0.00
.......G--TGTGTGxATTTGTTATTGTT................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...GTGTG--TGTGTGTGTGTTTT......................................................................................................................	19	32	0.03	0.03	0.00	0.00	0.00	0.00
TGTGTGTG--TGTGTGTGTGTGACA.....................................................................................................................	23	22	0.05	0.05	0.00	0.00	0.00	0.00
....TGTG--TGTGTGTCTGTGTTTTTG..................................................................................................................	22	6	0.17	0.00	0.00	0.17	0.00	0.00
...........GTGTGTGTGTGTGCTTGTT................................................................................................................	19	32	0.03	0.00	0.00	0.03	0.00	0.00
TGTGTGTG--TGTTTGTGTGCGTT......................................................................................................................	22	18	0.06	0.06	0.00	0.00	0.00	0.00
...GTGTG--TGTGTGTGTGTGTTG.....................................................................................................................	20	18	0.06	0.06	0.00	0.00	0.00	0.00
....TGTG--TGTGTGTGTGTGTTA.....................................................................................................................	19	23	0.04	0.00	0.04	0.00	0.00	0.00
TGTGTGTG--TGTGTGTGTGTGGTG.....................................................................................................................	23	25	0.04	0.00	0.00	0.04	0.00	0.00
..TGTGTG--TGTTTGTGTGTGCT......................................................................................................................	20	36	0.03	0.03	0.00	0.00	0.00	0.00
....TGTC--TGTGTGTCTGTGTT......................................................................................................................	18	21	0.05	0.00	0.05	0.00	0.00	0.00
TGTGTGTG--TGTGTGTGTGTGTTG.....................................................................................................................	23	13	0.08	0.00	0.00	0.08	0.00	0.00
.GTGTGTG--TGTTTGTGTGCGTT......................................................................................................................	21	21	0.05	0.05	0.00	0.00	0.00	0.00
......TG--TGTGCGTGTGTGTTTTT...................................................................................................................	19	24	0.04	0.04	0.00	0.00	0.00	0.00
......TG--TGTGTGTGTGTGTGGTTGTT................................................................................................................	22	14	0.07	0.00	0.00	0.07	0.00	0.00
..TGTGTG--TGTGTGTGTTTGTAA.....................................................................................................................	21	35	0.03	0.03	0.00	0.00	0.00	0.00
..TGTGTG--TGTGTGTGTGTGCTTTT...................................................................................................................	23	18	0.06	0.06	0.00	0.00	0.00	0.00
............TGAGTGTGAGTTATTGTTG...............................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00

scaffold_12875:19667272-19667350 -

26.73

GGCGCGCACTG-------GTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GGCCAACTTTATTTTGATGCGTGCGCATTTTAATGCATTTAAAGAGCAA----------------------CCATAACAACAACAGAAACAACGACAACTT------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................................CTC------------------------------------------------	20	17	0.12	0.00	0.00	0.12	0.00	0.00
...................................................................................................TT------------------------------------------------	19	6	0.33	0.33	0.00	0.00	0.00	0.00
....................................................................................................T------------------------------------------------	19	17	0.06	0.06	0.00	0.00	0.00	0.00
....................................................................................................T------------------------------------------------	20	40	0.03	0.03	0.00	0.00	0.00	0.00
....................................................................................................T------------------------------------------------	19	12	0.08	0.08	0.00	0.00	0.00	0.00
...................................................................................................TT------------------------------------------------	21	10	0.10	0.10	0.00	0.00	0.00	0.00
..................................................................................................CAT------------------------------------------------	22	4	0.25	0.25	0.00	0.00	0.00	0.00
..................................................................................................CTC------------------------------------------------	19	25	0.04	0.00	0.00	0.04	0.00	0.00
....................................................................................................T------------------------------------------------	22	19	0.05	0.00	0.00	0.05	0.00	0.00
...................................................................................................TT------------------------------------------------	21	21	0.05	0.00	0.00	0.05	0.00	0.00
.................................................................................................ACTA------------------------------------------------	20	6	0.17	0.17	0.00	0.00	0.00	0.00
...................................................................................................TT------------------------------------------------	17	42	0.02	0.00	0.02	0.00	0.00	0.00
...............................................................................................CTACTA------------------------------------------------	19	6	0.17	0.17	0.00	0.00	0.00	0.00
...................................................................................................TT------------------------------------------------	21	15	0.07	0.07	0.00	0.00	0.00	0.00
..................................................................................................CTC------------------------------------------------	20	21	0.05	0.05	0.00	0.00	0.00	0.00
........................................................................AATAACAACAACAAAAACAACG.......................................................	22	18	0.06	0.06	0.00	0.00	0.00	0.00
....................................................................................................T------------------------------------------------	21	19	0.05	0.05	0.00	0.00	0.00	0.00
...............................................................................................CAAGTG------------------------------------------------	26	27	0.04	0.04	0.00	0.00	0.00	0.00
....................................................................................................T------------------------------------------------	21	11	0.09	0.09	0.00	0.00	0.00	0.00
....................................................................................................T------------------------------------------------	19	13	0.08	0.08	0.00	0.00	0.00	0.00
....................................................................................................T------------------------------------------------	19	14	0.07	0.07	0.00	0.00	0.00	0.00
....................................................................................................T------------------------------------------------	22	18	0.06	0.00	0.00	0.06	0.00	0.00

scaffold_12758:494461-494494 +

20.0

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G-CGTGTGCTGGTGTGTGTGTGTGTGTGTGTGTTG-----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.............GTGTGTGTGTGTGTGTGTGTTC-----------------------------------------------------------------------------------------------------------	22	24	0.13	0.00	0.08	0.04	0.00	0.00
..........GGTGTGTGGGTGTGTGGGTGTG..............................................................................................................	22	7	0.29	0.29	0.00	0.00	0.00	0.00
.........AGGTGTGTTTGTGTGTGT...................................................................................................................	18	42	0.05	0.05	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTATTTGTTG-----------------------------------------------------------------------------------------------------------	21	4	0.50	0.50	0.00	0.00	0.00	0.00
.................GTGTGTGTTGGTGTGTTG-----------------------------------------------------------------------------------------------------------	19	4	0.50	0.50	0.00	0.00	0.00	0.00
...................GTGTGTTGGTGTGTTG-----------------------------------------------------------------------------------------------------------	18	3	0.67	0.67	0.00	0.00	0.00	0.00
..............TGTGTCTGTGCGTGTGTGTTG-----------------------------------------------------------------------------------------------------------	21	3	0.33	0.00	0.00	0.00	0.33	0.00
..............TGTGTGTGTGTGTCTGTGTTA-----------------------------------------------------------------------------------------------------------	21	19	0.05	0.05	0.00	0.00	0.00	0.00
..............TGTGTGTGTTTGTGTGTGCT............................................................................................................	20	36	0.03	0.03	0.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGGTG-----------------------------------------------------------------------------------------------------------	23	25	0.04	0.00	0.00	0.04	0.00	0.00
...............CTGTGTGCGTGTGTGTGTT............................................................................................................	19	32	0.03	0.03	0.00	0.00	0.00	0.00
................TGCGTGTGTGTGTGTATTG-----------------------------------------------------------------------------------------------------------	19	9	0.11	0.11	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTTC-----------------------------------------------------------------------------------------------------------	19	36	0.03	0.00	0.03	0.00	0.00	0.00
.............GTGTGTGTGTTTGTGTGCGTT............................................................................................................	21	21	0.05	0.05	0.00	0.00	0.00	0.00
...............GTGTGTGTGTGTGTGTTTT............................................................................................................	19	32	0.03	0.03	0.00	0.00	0.00	0.00
...............GTGTCTGTGTGTGTGTGTTG-----------------------------------------------------------------------------------------------------------	20	21	0.05	0.05	0.00	0.00	0.00	0.00
................TGTGTGTGTTGGTGTGTT............................................................................................................	18	18	0.06	0.06	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGCGTATTG-----------------------------------------------------------------------------------------------------------	19	13	0.08	0.08	0.00	0.00	0.00	0.00
.........TGGTGTGTGGGTGTGTGGGTGT...............................................................................................................	22	2	0.50	0.00	0.00	0.50	0.00	0.00
...................GTGTGTGTGTGTGTTT-----------------------------------------------------------------------------------------------------------	20	33	0.03	0.03	0.00	0.00	0.00	0.00
...........ATGTGTGTGTGTGTGTGTTTGTT............................................................................................................	23	30	0.03	0.00	0.00	0.03	0.00	0.00
...............GTGTGTGTGTGTGTGTGTTG-----------------------------------------------------------------------------------------------------------	21	28	0.04	0.04	0.00	0.00	0.00	0.00
..GATGTGCTGGTGTGTGTGTG........................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGTGTATTG-----------------------------------------------------------------------------------------------------------	19	8	0.13	0.13	0.00	0.00	0.00	0.00
...............GTGTGTGTGTGTGTGTGTTT-----------------------------------------------------------------------------------------------------------	23	29	0.03	0.00	0.03	0.00	0.00	0.00
........TTGCTGTGTGTGTGTGT.....................................................................................................................	17	42	0.02	0.00	0.02	0.00	0.00	0.00
..............TGCGTGTGTGTGTGTGTTTT............................................................................................................	20	34	0.03	0.00	0.03	0.00	0.00	0.00
...............GTGTGTGTGTGTGTTTGTTG-----------------------------------------------------------------------------------------------------------	20	33	0.03	0.03	0.00	0.00	0.00	0.00
............AGTGTGTGTGTGTGAGTGTGTT............................................................................................................	22	25	0.04	0.00	0.00	0.04	0.00	0.00
.........TGGTGTGTGTGTGTGTGTGTG................................................................................................................	21	11	0.09	0.09	0.00	0.00	0.00	0.00
...........GTGTGTGTGTGTGTGTGTGTTTT............................................................................................................	23	16	0.06	0.00	0.00	0.06	0.00	0.00
...............GTGTGTGTGTGTGTGTGTCG-----------------------------------------------------------------------------------------------------------	21	19	0.05	0.05	0.00	0.00	0.00	0.00
..CGTGTGCTGGTGTTAGTG..........................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
................TGTGGATGTGTGTGTGTT............................................................................................................	18	23	0.04	0.00	0.04	0.00	0.00	0.00
..AGTGTGCTTGTGTGTGTGTG........................................................................................................................	20	17	0.06	0.00	0.00	0.06	0.00	0.00
.............GTGTGTGTGTGCGTGTGTTTT............................................................................................................	21	29	0.03	0.03	0.00	0.00	0.00	0.00
............TGTGTGCGTGTGTGTGTGTGCT............................................................................................................	22	29	0.03	0.03	0.00	0.00	0.00	0.00
.............GTGCGTGTGTGTGTGTGTGTCG-----------------------------------------------------------------------------------------------------------	24	2	0.50	0.00	0.00	0.50	0.00	0.00
.............GTGTGTGTGTGTGTGTGTTTT............................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
........TTGGTGTGTATGTGTGTGTGT.................................................................................................................	21	15	0.07	0.07	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTATGGT............................................................................................................	20	36	0.03	0.03	0.00	0.00	0.00	0.00
....TGTGCTTGAGTGTGTGTGTGT.....................................................................................................................	21	8	0.13	0.13	0.00	0.00	0.00	0.00
...............GTGTGTGTGTGTGCTTGTT............................................................................................................	19	32	0.03	0.00	0.00	0.03	0.00	0.00
.................GTGTGTGTGTGAGTGTTG-----------------------------------------------------------------------------------------------------------	21	5	0.20	0.20	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGCTT-----------------------------------------------------------------------------------------------------------	19	32	0.03	0.00	0.00	0.03	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGGT............................................................................................................	22	15	0.07	0.00	0.07	0.00	0.00	0.00
...............GTGGGTGTGTGGGTGTGTT............................................................................................................	19	16	0.06	0.06	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTTA-----------------------------------------------------------------------------------------------------------	19	23	0.04	0.00	0.04	0.00	0.00	0.00
....TGAGCTCGTGTGTGTGTGTGTG....................................................................................................................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
.........TGGTGTGTGTGCGTGTGTGTG................................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGCT............................................................................................................	22	25	0.04	0.04	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGTAG-----------------------------------------------------------------------------------------------------------	19	48	0.02	0.00	0.00	0.02	0.00	0.00
.........AGGTGTGTGTTTGTGTGT...................................................................................................................	18	42	0.02	0.00	0.00	0.02	0.00	0.00
...................GTGTGTGTGTGTGTTC-----------------------------------------------------------------------------------------------------------	22	2	0.50	0.00	0.00	0.50	0.00	0.00
G-CGTATGCTTGTGTGTGTGT.........................................................................................................................	20	2	0.50	0.00	0.00	0.50	0.00	0.00
................TGTGTGTGTGTGTGTGTTG-----------------------------------------------------------------------------------------------------------	20	8	0.13	0.00	0.13	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTGTGTTG-----------------------------------------------------------------------------------------------------------	21	18	0.06	0.06	0.00	0.00	0.00	0.00
.........TGGTGTGTGTCCGTGTGTGTG................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00	0.00
.........TGGTGTGTTGGTGTGTGTG..................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00	0.00
.............GTATGTGTGTGTGTGTGTGCT............................................................................................................	21	39	0.03	0.00	0.00	0.03	0.00	0.00
................TGTGTGTGTGTGTGTGGTT-----------------------------------------------------------------------------------------------------------	22	14	0.07	0.00	0.00	0.07	0.00	0.00
............TGTGTGTGTGTGTGAGTGTTTT............................................................................................................	22	23	0.04	0.00	0.04	0.00	0.00	0.00
..........GGTATGTATGTGTGTGTGT.................................................................................................................	19	26	0.04	0.04	0.00	0.00	0.00	0.00
...GTGTGTTGGTGTGTGTGTGTGTG....................................................................................................................	23	108	0.01	0.01	0.00	0.00	0.00	0.00
..........GATCTGTGTGTGTGTGTGTGTGT.............................................................................................................	23	33	0.03	0.00	0.00	0.03	0.00	0.00
...............GTGTGTGTGTGTGTGTGTTG-----------------------------------------------------------------------------------------------------------	20	18	0.06	0.06	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTTTGTGTGTTC-----------------------------------------------------------------------------------------------------------	21	29	0.03	0.03	0.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGGTTGTT............................................................................................................	22	14	0.07	0.00	0.00	0.07	0.00	0.00
.......GCTGGTGGCTGTGTGTGTGTG..................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGTTC-----------------------------------------------------------------------------------------------------------	21	17	0.06	0.06	0.00	0.00	0.00	0.00
................TGTCTGTGTGTCTGTGTT............................................................................................................	18	21	0.05	0.00	0.05	0.00	0.00	0.00
...........GTGTGTGTGTGTGTGTGTTTTTT............................................................................................................	23	29	0.03	0.00	0.03	0.00	0.00	0.00
................TGTGTGTGTGTGTxTGCTG-----------------------------------------------------------------------------------------------------------	20	3	0.33	0.33	0.00	0.00	0.00	0.00
....TGTACTGCTGTGTGTGTG........................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
...............GTGTGTGCGTGTGTGTGTTA-----------------------------------------------------------------------------------------------------------	22	11	0.09	0.09	0.00	0.00	0.00	0.00
..CGTGTGCTCGTGTGTGTG..........................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00	0.00
.....ATGCTCGTGTGTGTGTGTGTG....................................................................................................................	21	5	0.20	0.00	0.00	0.20	0.00	0.00
.................GTGTGTGTGTGTGGGGTG-----------------------------------------------------------------------------------------------------------	19	3	0.33	0.00	0.33	0.00	0.00	0.00
...GTGTGCTAGTGTGTATGTGT.......................................................................................................................	20	6	0.17	0.00	0.00	0.17	0.00	0.00
............TCTGTGTGTGTGTGTGTGAGTT............................................................................................................	22	17	0.06	0.06	0.00	0.00	0.00	0.00
...............GTGTGTGTGTGTCTGTGTTG-----------------------------------------------------------------------------------------------------------	21	8	0.13	0.00	0.00	0.13	0.00	0.00
.......GAAGGTGTGTGTGTGTGT.....................................................................................................................	18	28	0.04	0.04	0.00	0.00	0.00	0.00
............TGTGTGTGTGTTTGTGTGCGTT............................................................................................................	22	18	0.06	0.06	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGTCG-----------------------------------------------------------------------------------------------------------	20	32	0.03	0.03	0.00	0.00	0.00	0.00
.......GCTGTTGTCTGTGTGTGTG....................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
............TGTGTGTGTGTGTGTGTGTGTTG-----------------------------------------------------------------------------------------------------------	23	13	0.08	0.00	0.00	0.08	0.00	0.00
................TGTTTGTGTGTGTGTTTTG-----------------------------------------------------------------------------------------------------------	19	17	0.06	0.00	0.00	0.00	0.00	0.06
............TGTGTGTGTGTGTGTGTGTCTT............................................................................................................	22	11	0.09	0.09	0.00	0.00	0.00	0.00
.......GTTGGTGTGTGTGTGTGTGC...................................................................................................................	20	18	0.06	0.06	0.00	0.00	0.00	0.00
....TGAGCTCGTGTGTGTGTGTGT.....................................................................................................................	21	3	0.33	0.33	0.00	0.00	0.00	0.00
........CTAGTATGTGTGTGTGTGTGT.................................................................................................................	21	12	0.08	0.08	0.00	0.00	0.00	0.00
....TGTGCTTGCGTGTGTGTGTG......................................................................................................................	20	11	0.09	0.09	0.00	0.00	0.00	0.00
...............ATGTGTGTGTGTGTGTGTTT-----------------------------------------------------------------------------------------------------------	23	30	0.03	0.00	0.00	0.03	0.00	0.00
......TGCTAGTGTGTGTGTGTGA.....................................................................................................................	19	5	0.20	0.00	0.00	0.20	0.00	0.00
...............GTGTGCATGTGTGTGTGTTG-----------------------------------------------------------------------------------------------------------	20	2	0.50	0.00	0.00	0.50	0.00	0.00
.....GTGCAGCTGTGTGTGTGTGTG....................................................................................................................	21	3	0.33	0.33	0.00	0.00	0.00	0.00

146

scaffold_13047:13483722-13483806 -

18.81

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTT---TTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA--------------------- GCGACTGACT--------------------------------------------------------------------------------ATCTTCCCGATCAAGATTATGCGCCTAATTTGAAGTT-GTAATTAATTTGGATACCCTAATAAAAAAGAGAATAAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................CAAGATTATGCGCCTAATTTG............................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

143

scaffold_13047:11213771-11213807 -

18.76

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G-TGCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAA---------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
......TGTCTGTGTCTGTGTGTG......................................................................................................................	18	247	0.02	0.00	0.02	0.00	0.00	0.00
.........CTCTGTGTGTGTGTGTGTGT.................................................................................................................	20	17	0.12	0.00	0.00	0.12	0.00	0.00
.......CTCTGTGTGTGTGTGTGTGT...................................................................................................................	20	17	0.12	0.00	0.00	0.12	0.00	0.00
......TGTCTGTGTCTGTGTGTGTG....................................................................................................................	20	185	0.01	0.01	0.00	0.00	0.00	0.00
................TGTGTGTGTGCGTGTGTGTA..........................................................................................................	20	20	0.05	0.00	0.05	0.00	0.00	0.00
........TCTGTCTGTGTGTGTGTGTGTG................................................................................................................	22	8	0.13	0.13	0.00	0.00	0.00	0.00
....CGTGCATGTGTGTGTGTGTGTG....................................................................................................................	22	24	0.04	0.04	0.00	0.00	0.00	0.00
.........CTCTGTGTGTGTTTGTGTGT.................................................................................................................	20	21	0.05	0.05	0.00	0.00	0.00	0.00
........TCTGTGTATGTGTGCGTGTG..................................................................................................................	20	18	0.06	0.06	0.00	0.00	0.00	0.00
......TGTCTATGTGTGTGTGTGTGT...................................................................................................................	21	10	0.10	0.10	0.00	0.00	0.00	0.00
.........CTGTGTGTxTGTGTGTGGGTGT...............................................................................................................	21	12	0.08	0.08	0.00	0.00	0.00	0.00
.................GTATGTGTGTGTGTGTGGA..........................................................................................................	19	47	0.02	0.00	0.00	0.02	0.00	0.00
.................GTGTGTGTGTGTGTGCGTAA---------------------------------------------------------------------------------------------------------	20	39	0.03	0.03	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGAGTGTGTGTA..........................................................................................................	22	16	0.06	0.06	0.00	0.00	0.00	0.00
.........CTGTATGTGTATGTGTGTGTG................................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTGTGTGGAC---------------------------------------------------------------------------------------------------------	23	38	0.03	0.03	0.00	0.00	0.00	0.00
........TCTGAGTGTGTGTGGGTG....................................................................................................................	18	13	0.08	0.00	0.08	0.00	0.00	0.00
.....GTTTCTGTGTGTGTGTGTGT.....................................................................................................................	20	196	0.01	0.01	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGTGTGTGCA..........................................................................................................	20	35	0.03	0.03	0.00	0.00	0.00	0.00
...................GTGTGTGTGTGTGTGTAG---------------------------------------------------------------------------------------------------------	19	48	0.02	0.00	0.00	0.02	0.00	0.00
................TGTGTGTGTGTGTCTGTGTTA---------------------------------------------------------------------------------------------------------	21	19	0.05	0.05	0.00	0.00	0.00	0.00
........TCTGTGTGCGTGTGCGTGT...................................................................................................................	19	21	0.05	0.05	0.00	0.00	0.00	0.00
.......GTCTGTGTGTGTTTGGGT.....................................................................................................................	18	6	0.17	0.00	0.00	0.17	0.00	0.00
.......GTCTGTGTGTGTTTGTGTGTGTGTGTG............................................................................................................	27	64	0.02	0.02	0.00	0.00	0.00	0.00
..................TGTGTGTGTGCGTGTGTAC---------------------------------------------------------------------------------------------------------	20	24	0.04	0.04	0.00	0.00	0.00	0.00
.................GCGTGTGTGTGTGTGTGTGA---------------------------------------------------------------------------------------------------------	22	21	0.05	0.00	0.00	0.05	0.00	0.00
......GATCTGTGTGTGTGTGTGTGTGT.................................................................................................................	23	33	0.03	0.00	0.00	0.03	0.00	0.00
......TGTCTGTATGTGTATGTGT.....................................................................................................................	19	17	0.06	0.06	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGTGCAA---------------------------------------------------------------------------------------------------------	21	19	0.05	0.05	0.00	0.00	0.00	0.00
......................TGTGTGTGTGTGAAA---------------------------------------------------------------------------------------------------------	18	5	0.20	0.00	0.00	0.20	0.00	0.00
....AGTGTCCGTGTGTGTGTG........................................................................................................................	18	23	0.04	0.00	0.04	0.00	0.00	0.00
.....GTGTCTGTGTGTGTGTGTTG.....................................................................................................................	20	21	0.05	0.05	0.00	0.00	0.00	0.00
.......CTCTGTGTGTGTTTGTGTGT...................................................................................................................	20	21	0.05	0.05	0.00	0.00	0.00	0.00
.................GTGGGGGTGTGTGTGTGTA..........................................................................................................	19	16	0.06	0.06	0.00	0.00	0.00	0.00
.............GTGTGTGTGTTGGTGTGTGT.............................................................................................................	20	173	0.01	0.01	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGTGTGCA..........................................................................................................	19	40	0.03	0.03	0.00	0.00	0.00	0.00
........TCTGTGTCTGTGTCTGTGTGT.................................................................................................................	21	13	0.08	0.08	0.00	0.00	0.00	0.00
.......GTCTGTGTGTCTGTGTGTGT...................................................................................................................	20	182	0.01	0.00	0.00	0.01	0.00	0.00
.......GTCAATGTGTGTGTGTGT.....................................................................................................................	18	23	0.04	0.04	0.00	0.00	0.00	0.00
......TTGCTGTGTGTGTGTGT.......................................................................................................................	17	42	0.02	0.00	0.02	0.00	0.00	0.00
........TCTGTGTGTGTGCGTGTGCG..................................................................................................................	20	22	0.05	0.00	0.00	0.00	0.05	0.00
........TCTGTGTGTGTGTGTGTGAGTT................................................................................................................	22	17	0.06	0.06	0.00	0.00	0.00	0.00
................TGTGTGCATGTGTGTGTGTAA---------------------------------------------------------------------------------------------------------	21	3	0.33	0.33	0.00	0.00	0.00	0.00
.....GTTTCTGTGTGTGTGTGTGTGT...................................................................................................................	22	141	0.01	0.00	0.00	0.01	0.00	0.00
.........CTGTGATTGTGTGTGTGTGT.................................................................................................................	20	8	0.13	0.00	0.00	0.13	0.00	0.00
..............TGTGTGTGTGTGTGAGTGTGAA..........................................................................................................	22	25	0.04	0.04	0.00	0.00	0.00	0.00
......TGTCTGTATGTATGTGTGTGT...................................................................................................................	21	23	0.04	0.04	0.00	0.00	0.00	0.00
................TGTGTGTGTGTGTGTTTGTAA---------------------------------------------------------------------------------------------------------	21	35	0.03	0.03	0.00	0.00	0.00	0.00
......TGTCTGTGTGTCTGTGTT......................................................................................................................	18	21	0.05	0.00	0.05	0.00	0.00	0.00
...ACGTGTCTGTGTGTGCGTGTGT.....................................................................................................................	22	5	0.20	0.00	0.00	0.20	0.00	0.00
..............TGTGTGTGTGTGTGTGTGTGCCA---------------------------------------------------------------------------------------------------------	23	31	0.03	0.00	0.00	0.03	0.00	0.00
........TCTGAGTATGTGTGTGTGT...................................................................................................................	19	17	0.06	0.00	0.00	0.00	0.00	0.06
...............GTGTGTGTGCGTGTGTGTGTAT---------------------------------------------------------------------------------------------------------	24	12	0.08	0.00	0.00	0.08	0.00	0.00
................TGTGTATGTGTGTGTGCGTA..........................................................................................................	20	37	0.03	0.03	0.00	0.00	0.00	0.00
....CGTGCATGTGTGTGTGTGTGT.....................................................................................................................	21	28	0.04	0.00	0.00	0.04	0.00	0.00
.......GTCTGTGTGTGTCTCTGTGT...................................................................................................................	20	5	0.20	0.20	0.00	0.00	0.00	0.00
.....GTATCTGTGTGTGTGTGTGT.....................................................................................................................	20	11	0.09	0.00	0.00	0.09	0.00	0.00
.......GTCTGTGTGTGTGCGTGA.....................................................................................................................	18	17	0.06	0.06	0.00	0.00	0.00	0.00
A-TGGGTGTCTGTGTGTGTG..........................................................................................................................	19	23	0.04	0.04	0.00	0.00	0.00	0.00
.......GTCTGAGTGTGTGTCTGTGT...................................................................................................................	20	5	0.20	0.00	0.00	0.20	0.00	0.00
..............TGTGTATGTATGTGTGTGTGTA..........................................................................................................	22	25	0.04	0.04	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGTGTCTGTA..........................................................................................................	19	18	0.06	0.06	0.00	0.00	0.00	0.00
.....GTGTCTGTGTGTGCATGTGT.....................................................................................................................	20	14	0.07	0.07	0.00	0.00	0.00	0.00
..................TGTGTGTGGGTGTGTGTGA---------------------------------------------------------------------------------------------------------	21	20	0.05	0.00	0.05	0.00	0.00	0.00
.........CTGTGTGTGTGTGTGTGTGTGTGTGT...........................................................................................................	26	86	0.01	0.01	0.00	0.00	0.00	0.00
.................GTGTGTGTGTGCGTGTGTA..........................................................................................................	19	19	0.05	0.05	0.00	0.00	0.00	0.00
........TCTGTGTGTGTGGGAGTG....................................................................................................................	18	15	0.07	0.00	0.07	0.00	0.00	0.00
..................TGTGTGTGTGTGTGTGTTA---------------------------------------------------------------------------------------------------------	19	23	0.04	0.00	0.04	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTGTGTGTA..........................................................................................................	22	159	0.01	0.01	0.00	0.00	0.00	0.00
.......GCCTGTGTGTGTGTGTGTGTGTGTGT.............................................................................................................	26	87	0.01	0.00	0.00	0.01	0.00	0.00
.....TTGTCTGTGTTTGTGTGTG......................................................................................................................	19	12	0.08	0.08	0.00	0.00	0.00	0.00
G-TACGTGTATGTGTGTGTG..........................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
....CGCGTCTGTGTGTGTGTGTG......................................................................................................................	20	18	0.06	0.00	0.06	0.00	0.00	0.00
..............TGTGTGTGTGTGTGTGTGTGACA---------------------------------------------------------------------------------------------------------	23	22	0.05	0.05	0.00	0.00	0.00	0.00
.........CTGTGTGCGTGTGTGTGTT..................................................................................................................	19	32	0.03	0.03	0.00	0.00	0.00	0.00
....CGTGCATGTGTGTGTGTGTG......................................................................................................................	20	31	0.03	0.03	0.00	0.00	0.00	0.00
........TCTGTGCGTGTATGTGTGTGTGT...............................................................................................................	23	10	0.10	0.00	0.00	0.10	0.00	0.00
..TGCGTGTATGTATGTGTGT.........................................................................................................................	19	24	0.04	0.04	0.00	0.00	0.00	0.00
.......CTCTGTGTGTGTGTCTGTG....................................................................................................................	19	25	0.04	0.00	0.00	0.04	0.00	0.00
.....GTGTCTGTGTGTGTGCGTGTG....................................................................................................................	21	162	0.01	0.01	0.00	0.00	0.00	0.00
.......GTCCGTGTGTGTGTGCGTGT...................................................................................................................	20	15	0.07	0.07	0.00	0.00	0.00	0.00
.......GTCTGTGTGTGTGGGAGTGTG..................................................................................................................	21	8	0.13	0.00	0.13	0.00	0.00	0.00
.........CTCTGTGTGTGTGTCTGTG..................................................................................................................	19	25	0.04	0.00	0.00	0.04	0.00	0.00
......TGTCTGTGTATGTGTGCG......................................................................................................................	18	22	0.05	0.00	0.05	0.00	0.00	0.00

droMoj3 - 38 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

117

scaffold_6496:18207583-18207733 -

48.16

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTG----GAAAATCGGATTTCGTAAAACG----------------------------------CATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCA---CAA GACACAGTCTGTCGTGTGTGTGTGTGTGTGTCTGTGTGT-ATTTCCTTTCTTGTTAAGCTGCTTTGGCTTTTCAATTTTATTCCTGTATTTGCGTGTCC-AATGTTCAAATTAGCAAAA---TGTACAA---------------------------GCAGTAAATATCTACATTACATGGCCA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.....................................................................................................................AA---TGTCCAA---------------------------GCAGTAAGT..................	18	1	3.00	1.00	1.00	1.00	0.00
..................TGTGxGTGTATGTCTGTGTGT-...............................................................................................................................................	20	21	0.10	0.00	0.10	0.00	0.00
...................GAGTGTGxGTGTCTGTGTGT-...............................................................................................................................................	19	14	0.14	0.00	0.14	0.00	0.00
............CGTGTGTGTGTGTGTATGCCT......................................................................................................................................................	21	11	0.18	0.18	0.00	0.00	0.00
..............TGTGTGTGTGTGTATGCCTG.....................................................................................................................................................	20	28	0.07	0.04	0.04	0.00	0.00
..............TGTGTGTGTATGTGTGTCTG.....................................................................................................................................................	20	8	0.25	0.00	0.25	0.00	0.00
..............TGTGTGTGTGTGTATGCCTGTG...................................................................................................................................................	22	12	0.17	0.00	0.08	0.08	0.00
........................TGAGTGTGTGTGTGT-ATTTC..........................................................................................................................................	20	6	0.17	0.17	0.00	0.00	0.00
............CCTGTGTGTGCGTGTGTG.........................................................................................................................................................	18	41	0.02	0.00	0.00	0.02	0.00
......................TGTGAGTGTGTGTGTGT-ATT............................................................................................................................................	20	34	0.03	0.03	0.00	0.00	0.00
..............TGTGTGTGTxCGGGTGTCTGTG...................................................................................................................................................	21	5	0.20	0.20	0.00	0.00	0.00
.................GTGTGAGTGCGTGTCTGTG...................................................................................................................................................	19	5	0.20	0.20	0.00	0.00	0.00
.............GTGTGTGTGTATGTGTGTCTGTC...................................................................................................................................................	23	6	0.17	0.00	0.00	0.17	0.00
.................GTGTGTGTATGTGTCTGTA...................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
............CGAGTGTGTGTGTGTGTG.........................................................................................................................................................	18	13	0.08	0.08	0.00	0.00	0.00
....................TGTGTGTGTGTATGTGTGT-CTT............................................................................................................................................	22	18	0.06	0.06	0.00	0.00	0.00
........ATGTCGTGTGTGTGTGTGTG...........................................................................................................................................................	20	6	0.17	0.00	0.00	0.17	0.00
..............TGTGTGTGTATGTGTGTCTGTG...................................................................................................................................................	22	129	0.01	0.01	0.00	0.00	0.00
...............CTGTGTGTGTGTGTGTCAG.....................................................................................................................................................	19	30	0.03	0.03	0.00	0.00	0.00
............CGTGCGTGTGTGTGTATGTC.......................................................................................................................................................	20	6	0.17	0.17	0.00	0.00	0.00
..............TGTGTGTGTGTGAGTTTC.......................................................................................................................................................	18	36	0.03	0.03	0.00	0.00	0.00
.....................ATGCGTGTGTCTGTGTGT-...............................................................................................................................................	18	48	0.02	0.00	0.02	0.00	0.00
..............TGTGTGTGxGTGTATGTCTGTGT..................................................................................................................................................	22	6	0.17	0.17	0.00	0.00	0.00
..................TGGGTGTGTGTGTCTGTGTAT-...............................................................................................................................................	21	19	0.05	0.00	0.05	0.00	0.00
.............GTATGTGTGTGTGTATGTC.......................................................................................................................................................	19	42	0.02	0.02	0.00	0.00	0.00
.........TAGCGTGTGTGTGTGTGTGTG.........................................................................................................................................................	21	19	0.05	0.00	0.00	0.00	0.05
..............TATGTGTGTGTGTGTGTCTGT....................................................................................................................................................	21	26	0.04	0.04	0.00	0.00	0.00
.............GTGTGTGTGTGTGTGTGTCT......................................................................................................................................................	20	155	0.01	0.01	0.00	0.00	0.00
..................TGTGTGTGTGTGTCTGTATGC-...............................................................................................................................................	21	32	0.03	0.00	0.03	0.00	0.00
.................GTGTGTxCGGGTGTCTGTG...................................................................................................................................................	18	11	0.09	0.09	0.00	0.00	0.00
....................TGTGTGTGTGTCTGTGAGA-...............................................................................................................................................	19	15	0.07	0.00	0.07	0.00	0.00
.............TTGTGTGTGTGTGTGTTTCTG.....................................................................................................................................................	21	8	0.13	0.00	0.00	0.13	0.00
..............TGTGTGTTTGTGTGTGTCTG.....................................................................................................................................................	20	175	0.01	0.00	0.00	0.01	0.00
................TGTGTGTGCGTGTGTCTATGTG.................................................................................................................................................	22	11	0.09	0.00	0.00	0.00	0.09
...........GCATGTGTGTGTGTGTGTGTCTG.....................................................................................................................................................	23	11	0.09	0.00	0.00	0.00	0.09
....................TGTGTATGTGTGTGTGTGT-ATT............................................................................................................................................	22	28	0.04	0.04	0.00	0.00	0.00
............CGTGTGCGTGTGTGTTTGTC.......................................................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
........ATGTCATGTGTGTGTGTGTGT..........................................................................................................................................................	21	2	0.50	0.00	0.00	0.00	0.50
..............TGTGTGAGTGTGTGTGTCTGTG...................................................................................................................................................	22	111	0.01	0.00	0.00	0.00	0.01
............CGTGTGTGTGTATGTGTGTC.......................................................................................................................................................	20	19	0.05	0.05	0.00	0.00	0.00
...........TCGAGTGTGTGTGTGTGT..........................................................................................................................................................	18	28	0.04	0.00	0.00	0.04	0.00
.........TGCCGTGTGTGTGTGTGTGTG.........................................................................................................................................................	21	9	0.11	0.00	0.00	0.00	0.11
.................GTTTGTGTGCGTGTCTGT....................................................................................................................................................	18	8	0.13	0.00	0.00	0.00	0.13
..........CTCGTGTGTGTGTGTGTGTGTGTGT....................................................................................................................................................	25	14	0.07	0.00	0.07	0.00	0.00
..................TATGTGTGTGTGTCTGAGTGT-...............................................................................................................................................	21	24	0.04	0.04	0.00	0.00	0.00
..........GTGGTGTTTGTGTGTGTGT..........................................................................................................................................................	19	8	0.13	0.00	0.00	0.13	0.00
....................TGTGTGTGTGTCTGTTTC.................................................................................................................................................	18	43	0.02	0.00	0.02	0.00	0.00
.....................GTGTGTGTGGCTGTGTGG-...............................................................................................................................................	18	18	0.06	0.06	0.00	0.00	0.00
..............TGTGTGTGTGTCTGTTTC.......................................................................................................................................................	18	43	0.02	0.00	0.02	0.00	0.00
...................GTGGGTGGGTGTCTGTG...................................................................................................................................................	17	15	0.07	0.00	0.07	0.00	0.00
......................TGTGAGTGTGTGTGTGT-ATTT...........................................................................................................................................	21	22	0.05	0.00	0.05	0.00	0.00
................TGTGTGTGTTTGTGCCTGTGT..................................................................................................................................................	21	2	0.50	0.00	0.00	0.00	0.50
.........................GTGTGTTTGTGTGT-ATTTGC.........................................................................................................................................	20	7	0.14	0.14	0.00	0.00	0.00
.................GTGTGTATGTGTGTCTGT....................................................................................................................................................	18	14	0.07	0.00	0.00	0.00	0.07
...............GTGTGTATGTGTGTATCTG.....................................................................................................................................................	19	22	0.05	0.00	0.00	0.00	0.05
....................TCTGTATGTGTCTGTGTGT-...............................................................................................................................................	19	49	0.02	0.02	0.00	0.00	0.00

scaffold_6496:8587787-8587937 -

46.06

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTA--------------ATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TGTGTGTATGTGTGTGTGTGTGTGTGTGAAGGGCAATATGAGCAGA-TGGTAAATGTGTTACATTTTATTGGCAATGTCGCCAATGTCAGCGATAGCGCGGAAATCGTGCATCACTTGTCAATGCCTGACAGAGCGACAACAACAA----CAACGA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
......TATGTGTGCGTGTGTGTTTGT.................................................................................................................................	21	24	3.13	2.08	0.50	0.54	0.00
......TATGTGTGCGTGTGTGTTTG..................................................................................................................................	20	30	1.43	0.87	0.47	0.10	0.00
......TATGTCTGTGTGTGTGCGTGT.................................................................................................................................	21	31	0.35	0.16	0.00	0.00	0.19
TGTGTGTATGTGTTTGTGTATG......................................................................................................................................	22	12	0.33	0.25	0.00	0.08	0.00
.....GTATGAGTGTGTGTGTGTGT...................................................................................................................................	20	8	0.50	0.50	0.00	0.00	0.00
......TATGTCTGTGTGTGTGCGTG..................................................................................................................................	20	33	0.12	0.03	0.03	0.03	0.03
.....GTATGAGTGTGTGTGGGT.....................................................................................................................................	18	20	0.15	0.10	0.05	0.00	0.00
.GTGTGTATGTGTTTGTGTATG......................................................................................................................................	21	13	0.23	0.15	0.08	0.00	0.00

156

scaffold_6680:15157019-15157177 -

45.11

GGCGCGCACTGG-------TGTGTGTGTGTGAGT-----------GTGGGTGGAAA-ATCGGATTTCGTAAAACGCATTTAATTGTTAACA--GCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA AATGCATGCAGGGCCACTCTGTGTGCTAGAGAGAGATGGAGAATGGAAGGTGGATAAATTGATTTGCGTAG-GCGCAACTT-TTGAACCTGGTCCAGCGA-TAAGTGTAAAACTTAATTAAATTTTTAACAAACAAAATAAAA-TAAAACACAAGTGGCAAGA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.....ATGCAGGCGCACTCTGTGT...........................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.....ATGCAGGCGCACTCTGTG............................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
................................GAGCTGGAGTATGGAAGG.................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..................................GATGGAGxATGGAAGGAGG..............................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
............................GAAAGAGATGGAGAAAGG.....................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00

112

scaffold_6496:11554155-11554287 -

41.52

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGT----ATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAA---ATTGCACAA
AATCCGAACCGAGAGAGCTG----------------AAGAGAACGAGCGTGAGATGTAGTTCGTGGGCAACAGCAGCAGGCAATCAGACACGTGCGTTGGTTGAGCCTGCTCCACCTGCCAAAGGGCTGCGCAAAAAGGTATGCCACAA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

102

scaffold_6496:10613032-10613164 -

41.28

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGT----------------AAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AGAGAGTGAGAGCTACTGTGTATAAGCATTGAGCGAAAAATGCGTTGAACTTAATTTAAATTAAAGATAAACAAATTATGCGCCATCAAAAGCTG-------------------------AATACGTTTTGCATATTTTGGGTTTTCGAATTAAGTTA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

114

scaffold_6496:17655289-17655410 -

39.61

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTT-TCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GGCATCAACAAATAATAACAATATAAT------------AATAATATAATAATATATATTTAATAGAAAAAACTA---------AAAATAAATTAACAGAACAAGCTAACTTTTTATAAAAGATAAATAATTGAACATTACAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................TAATGGAAAAAACxA---------AAAAT......................................................	19	4	0.25	0.00	0.00	0.00	0.25

121

scaffold_6496:23577659-23577812 -

38.97

GGCGCGCACTGGTGT---GTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTG-------------TTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTC------------ACTTA--------CAGTTAGTAATCAAATTGCACAA CGAA----TTGATGATGCCTAGAAGGTATAGGAGATGAATAA-------------------TTAAAGGGATAAAAGAGAGGGAGGAGATCAGCAAAAAGGAGCAAACTGAATTTGAAGTTGATAAAGCAATATGAAACGCCAACTGAAAGCAGCTTAACTAGCAATTAAATTGCTG--	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....................................................................GATAAAAxAGAGGGAAGAGA..........................................................................................	19	3	0.33	0.33	0.00	0.00	0.00
................................................................AAGGTATATAAGAGAGGGA...............................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_6359:3512059-3512218 -

38.83

GGCGCGCACTGGTGT-GTGTGTGTGAGTGTGG---GTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAAC-AGCAGCAAAAACGTGTAT---AATTTACCTGATTTT---TCTA------CATCTCAC-TTACAGTTAGTAATCAAATTGCACAA GATGAAAGCAGATGCTGAGACTGAGAATAAAGCTGGTAAGAAGACTAATGACTAATGGCTAATGAAAATGCTAATGAACAGCAAATGAGGCGATGAGAAGCCAGTTGATGAGCTGACTAAGGAGGAAGCTGATTGGAAAGCTAAAGCTAAAGCTGAAGAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..............................................................................................................GACTGAxxAAGGAGGAAGC...............................	17	1	1.00	0.00	1.00	0.00	0.00

scaffold_6473:6724837-6724957 -

38.35

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAA----ATCGGATTTCGTAAA-----ACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GGCTCGCAATTTGCCTTGGCAATGGGCGGTAATTGGCAGTTAGGCTGCTCGCTTCAAAGTGGACTCATTTCGATTCCCATAGACATTGATACTTGAATCA----------------AC--------------ATCCAATCAAATTGCCCAG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...TCGCAATTTxCCTTGGCCAT................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_6328:626204-626362 +

37.89

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTT-ACCTGATTT-TTCTACATCTCACTTACAGTTAGTAATCAAATTGCAC-----------------------------------------------------------AA GGCACCAAGT-GTGTAGCAATGCCACCGAAACTGGAG--------------------------------------GC--AATCGTGTTGATTTCAACCTGCTTTATTGCACAGCCCTCGTACACGTGA--GCCAAATAGT-CAGAACGTAATAGACCGACGCTATAAGCCTGCAATTATGATCGTTATATATTATATATATAT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...............................................................................................................................A--GCGAATTAGT-CAGAACGT......................................................	19	1	3.00	3.00	0.00	0.00	0.00
........................................................................................................................................................................................................TAT	21	2	0.50	0.50	0.00	0.00	0.00
..................AATGTCACCGAAAATGGAG--------------------------------------................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

107

scaffold_6496:11479050-11479141 -

37.86

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GTAGCGCCCATGTGTGTGTGTGTGTGTGTGGGTGGGTGTTTGTGTATGTTTGCATATATATATATATATATATATACGTATATGTGTGTAGT--------------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................GTGGGTGGGTGGGTGGTT.....................................................................................................	18	1	20.00	20.00	0.00	0.00	0.00
.......................GTGGGTGGGTGGGTGTTTGG...................................................................................................	20	1	8.00	8.00	0.00	0.00	0.00
...............GTATGAGTGTGTGTGGGT.............................................................................................................	18	20	0.15	0.10	0.05	0.00	0.00
.........ATGTGTTTGTGTATGTGTG..................................................................................................................	19	45	0.04	0.02	0.02	0.00	0.00
.......................GTGGGTGGGTGGGTGGTTG....................................................................................................	19	1	2.00	0.00	1.00	1.00	0.00
........................TGGGTGGGTGGGTGTTTGG...................................................................................................	19	1	2.00	1.00	1.00	0.00	0.00
.............GTGTGTGTGTGTGTGTGGGTGCGTGT.......................................................................................................	26	66	0.02	0.02	0.00	0.00	0.00
...................GTGGGTGTGTGGGTAGGT.........................................................................................................	18	4	0.25	0.25	0.00	0.00	0.00
...........GTGTGTGTGTGTGTGTGTGGCT.............................................................................................................	22	127	0.01	0.01	0.00	0.00	0.00
.......GCATGTGCGTGTGTGTGTGTG..................................................................................................................	21	14	0.07	0.07	0.00	0.00	0.00
.....................GTGTGTGTGTGTTGGTGTT......................................................................................................	19	24	0.04	0.04	0.00	0.00	0.00
...............GTGGGTGTGGGTGTGGGTG............................................................................................................	19	6	0.17	0.17	0.00	0.00	0.00
..............TGTGTGTGTGTGxCTGGTTGG...........................................................................................................	20	2	0.50	0.00	0.00	0.50	0.00
............TGTGTATGTGTGTGTGAGGGT.............................................................................................................	21	9	0.11	0.00	0.11	0.00	0.00
............TGTGTGGGTGTGGGTGTGGG..............................................................................................................	20	9	0.11	0.11	0.00	0.00	0.00
...................GTGTGTGGGTGGGTGGCT.........................................................................................................	18	5	0.20	0.20	0.00	0.00	0.00
..................TGTGTGTGTGTGGATGTGTGTT......................................................................................................	22	12	0.08	0.00	0.00	0.00	0.08
.......................GTGTGTGGGTGGGTGGCT.....................................................................................................	18	5	0.20	0.20	0.00	0.00	0.00
.........ATGTGTTTGTGTATGTGTGTG................................................................................................................	21	25	0.04	0.00	0.00	0.04	0.00
..................TGGGTGTGTGGGGGTGGG..........................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00
............................TGGGTGGGTGTGTGTGC.................................................................................................	17	34	0.03	0.00	0.03	0.00	0.00
.....................GTGGGTGTGGGTGGGTTT.......................................................................................................	18	3	0.33	0.33	0.00	0.00	0.00
............TGTGTGTGTGTGTGAGTAGG..............................................................................................................	20	20	0.05	0.00	0.00	0.00	0.05
.......................GTGGGTGGTTGGGTGTTTG....................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.........ATGCGTGTGTCTGTGTGT...................................................................................................................	18	48	0.02	0.00	0.02	0.00	0.00
............TGGGTGTGTGTGTGTGTGGTT.............................................................................................................	21	13	0.08	0.00	0.08	0.00	0.00
.......................GTGTGTGGGTGGGTGGTA.....................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.....................GTGTGTGTGGGTGGGTGGG......................................................................................................	19	11	0.09	0.09	0.00	0.00	0.00
.........ATGTGTGTATGTGTGTGCGT.................................................................................................................	20	34	0.03	0.00	0.00	0.03	0.00
..........TGTGTGTGTGxGGCTGTGTGG...............................................................................................................	20	7	0.14	0.00	0.00	0.14	0.00
........CATGTGTGTGTGTATGTGT...................................................................................................................	19	5	0.20	0.20	0.00	0.00	0.00
.........ATGTCTGTGTGTGTGAGTG..................................................................................................................	19	34	0.03	0.03	0.00	0.00	0.00
...GCxCCCATGTATGTGTGTGTG......................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
...........................GTGGGTGGGTGTCTGTG..................................................................................................	17	15	0.07	0.00	0.07	0.00	0.00
.........ATGTGTGTATGTGTGTGCGTG................................................................................................................	21	23	0.04	0.00	0.00	0.00	0.04
........CATGTGTCTGTGTGTGTGTGTGTG..............................................................................................................	24	24	0.04	0.04	0.00	0.00	0.00
..........TGTGTGTGTGTGTATGTGTAGG..............................................................................................................	22	16	0.06	0.06	0.00	0.00	0.00
.............GTGTGTGTGGGTGGGTGGG..............................................................................................................	19	11	0.09	0.09	0.00	0.00	0.00
.......CAACGTGTGTGTGTGTGTGT...................................................................................................................	20	16	0.06	0.06	0.00	0.00	0.00
..................TGTGTGTGGGTGGGTGGGTGT.......................................................................................................	21	3	0.33	0.00	0.00	0.33	0.00
.......GCATGTGTGTGTGCGTGTGT...................................................................................................................	20	17	0.06	0.00	0.00	0.00	0.06
......................TGTGTGTGGGTGGGTGGGTGT...................................................................................................	21	3	0.33	0.00	0.00	0.33	0.00
...............GTGGGTGTGGGTGTGGGT.............................................................................................................	18	12	0.08	0.08	0.00	0.00	0.00
............TGTGTGTGTGTATGTGTGG...............................................................................................................	19	15	0.07	0.07	0.00	0.00	0.00
.........ATGTGTATGTGTGTGTGTG..................................................................................................................	19	33	0.03	0.00	0.00	0.00	0.03
.........ATATGTATGTGTGTGTGTGTGGGT.............................................................................................................	24	22	0.05	0.05	0.00	0.00	0.00
...............GTGTGTGCGTGTGTGGGT.............................................................................................................	18	207	0.00	0.00	0.00	0.00	0.00
..........TGTGTGTGTGTGATTGTGTGG...............................................................................................................	21	7	0.14	0.00	0.14	0.00	0.00
.................CTGTCTGTGTGTGGGTGGG..........................................................................................................	19	3	0.33	0.00	0.33	0.00	0.00
..............TGTGTGTGTGTGTGTTGG..............................................................................................................	18	19	0.05	0.00	0.00	0.00	0.05
........CATGTGTGTGTGTGTGTGTAT.................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
................................TGGGTGTGTGTGTATGTGTGCA........................................................................................	22	5	0.20	0.00	0.00	0.00	0.20
...........GTGTGTGGGTGTGGGTGTGGGT.............................................................................................................	22	6	0.17	0.17	0.00	0.00	0.00
.............GTGTGTGTGTTTGTGTGGGTA............................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00
.........ATGAGTGTGTGTGTGTGTGT.................................................................................................................	20	22	0.05	0.05	0.00	0.00	0.00
........GATGTGTGTGTGTGTGTGTG..................................................................................................................	20	26	0.04	0.04	0.00	0.00	0.00
...........................GTGGGTGGGTGTTTGGGTT................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.............GTGTGAGTGTGTGTGTGGA..............................................................................................................	19	37	0.03	0.03	0.00	0.00	0.00
.................GTGTGTGTGGGTGGGTGGG..........................................................................................................	19	11	0.09	0.09	0.00	0.00	0.00
.........ATGTGTATGTGTGTGTGTTTG................................................................................................................	21	31	0.03	0.03	0.00	0.00	0.00
.........ATGTGTATGTGGGTGTGTGT.................................................................................................................	20	30	0.03	0.00	0.03	0.00	0.00
..........................TGTAGGTGGGTGTTTATG..................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..........TGTGTGTGTGTGTTTGTGTAG...............................................................................................................	21	33	0.03	0.00	0.00	0.03	0.00
.......GCATGTGTGTGTATGTGTGT...................................................................................................................	20	27	0.04	0.04	0.00	0.00	0.00
................TTTGTGTGTGGGTGGGTGGG..........................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
........CCTGTGTGTGCGTGTGTG....................................................................................................................	18	41	0.02	0.00	0.00	0.02	0.00
....................TGTGTGTGTGGGTCGGTGGTT.....................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.............GTATGTGTGTGTGTGTGGGT.............................................................................................................	20	186	0.01	0.01	0.00	0.00	0.00
................TGGGTGTGTGTGGGGGTGGG..........................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.............GTGTGTGTGGCTGTGTGG...............................................................................................................	18	18	0.06	0.06	0.00	0.00	0.00
...........GTGTGTGTGTGTGTGTGTGGGTGTGGGT.......................................................................................................	28	51	0.02	0.02	0.00	0.00	0.00
...................GTGTGCGTGTGGGTGGGTGAT......................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............GTATGAGTGTGTGTGGGTG............................................................................................................	19	14	0.07	0.07	0.00	0.00	0.00
................TGTGTGTGTGTGTGAGTAGG..........................................................................................................	20	20	0.05	0.00	0.00	0.00	0.05
.....GCCCCTGTGTGTGTGTGTGTGTGT.................................................................................................................	24	4	0.25	0.25	0.00	0.00	0.00
.........ATGTTTGTGTGCGTGTGT...................................................................................................................	18	39	0.03	0.03	0.00	0.00	0.00
........................TGTGTGTGTGGGTGTTTGA...................................................................................................	19	15	0.07	0.07	0.00	0.00	0.00
.............GTGTGTGTGTGGATGTGGGT.............................................................................................................	20	9	0.11	0.11	0.00	0.00	0.00
..............GGTGTGTGGGTGTGTGGGT.............................................................................................................	19	12	0.08	0.08	0.00	0.00	0.00
.......GCATGTGTGTGTGTGTGTGTCTG................................................................................................................	23	11	0.09	0.00	0.00	0.00	0.09
............TCTGTGCGTGTGTGTGTGGGTG............................................................................................................	22	10	0.10	0.00	0.00	0.00	0.10
...................GTGGGTGTGTGGGTGGCT.........................................................................................................	18	4	0.25	0.25	0.00	0.00	0.00
...................................................................ATATATGTACATATATGTGTGT.....................................................	22	27	0.04	0.00	0.00	0.00	0.04
............TGTGTATGTGTGCGTGTGGGTG............................................................................................................	22	8	0.13	0.00	0.00	0.00	0.13
................................TGGGTGTGTGTGTATGTTT...........................................................................................	19	30	0.03	0.00	0.03	0.00	0.00
...........GTGTGTGTGTGTGTGTGTGGGAC............................................................................................................	23	12	0.08	0.08	0.00	0.00	0.00
.......ACATGTGCGTGTGTGTGTGTG..................................................................................................................	21	17	0.06	0.00	0.00	0.06	0.00
................TGTGCGTGTGTGTGGGTGGGTC........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00

scaffold_6496:9243627-9243752 +

36.58

GGCGCGCACTGGTG--TGTGTGTGTGAGTGTGGGTGG-------------AAAATCGGATTTCGTAAAACGCATTTAAT---TGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GGCGGGCGGT---GTAGGCGTGGCTGGGTGCTGGCATGCTTACAAGTTTCAACAACAATTTCCGTCGATTGTGTTGAAGAAGT----GTGGAAAAAAAAAAGTATTTTTCTTGCCCGATGT---------------------------CAACACGGATAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..............................................................................GAAGT----GTGGTGAAAAAAA............................................................	18	1	5.00	4.00	1.00	0.00	0.00
..............................................................................GAAGT----GTGGTGAAAAAAAA...........................................................	19	1	3.00	3.00	0.00	0.00	0.00
.......GGT---GTAGGCGTTGGTGGG....................................................................................................................................	18	1	2.00	2.00	0.00	0.00	0.00
.................................................................CGAxTGTTTTGAAGAAGT----GT.......................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.............................................................................ATAATT----GTGGAAAAAAAAA............................................................	19	1	1.00	0.00	0.00	0.00	1.00
..............................................................................GAGGT----GAGGAAAAAAAAA............................................................	18	1	1.00	1.00	0.00	0.00	0.00
.......TGT---GTGGGCGTGGCTGGG....................................................................................................................................	18	3	0.33	0.00	0.33	0.00	0.00
......CGGT---GGAGGCGTGGGTGGG....................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..............................................................................GAAGT----GTGGTAAAAAAAAA...........................................................	19	1	1.00	0.00	0.00	0.00	1.00

scaffold_6680:13218290-13218408 +

36.29

GGCGCGCA-----CTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACG----TGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGT-AATCAAATTGCACAA CACACTAAATGCACCAGCAG----------------------------CAGCAGCAGCGAACGGTAAATTAATAATAATAATGAAAAAAAAGTAGTATGATGAGCGCGAGT---TCATAATTAATTTAT---TAATAAGCCAGACTAGAAAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.........TGTACCAGCAG----------------------------CAGCAGCC................................................................................................	19	30	0.03	0.00	0.00	0.03	0.00

150

scaffold_6680:13952733-13952846 -

33.53

GGCGCGCACTGGT-------------------GTGTGTGTGTGAGTGTGGGTGGAAAATCGGA-----------------TTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TTTGGGCGCTTGTCTGTTTTCAGTCATTGTGCGTGTGTGTGTGTGTTTGTGTGTGTCAACGGCACACAGACACTTTCCGCTTTT-GAAGTGGCTTTTAATTGATAAAA---------------------------------------------------------------AGCAAAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.................................TGTGTGTATGTGTTTGTGTATG...........................................................................................................................	22	12	0.33	0.25	0.00	0.08	0.00
..................................GTGTGTATGTGTTTGTGTATG...........................................................................................................................	21	13	0.23	0.15	0.08	0.00	0.00
...........................TATGCGTGTGTGTGTGTGCTT..................................................................................................................................	21	7	0.29	0.14	0.00	0.14	0.00
.................................TGTGTGTATGTGTTTGTATGT............................................................................................................................	21	10	0.20	0.20	0.00	0.00	0.00
...........................TGTGCGTGTGTGTATGTGTTT..................................................................................................................................	21	14	0.14	0.14	0.00	0.00	0.00
.................................TGTGTGTGTGTGTTTGTGTGT............................................................................................................................	21	121	0.01	0.01	0.00	0.00	0.00
.....................................TGTGTGTGTTTGTGTGTGT..........................................................................................................................	19	171	0.01	0.00	0.01	0.00	0.00
.................................TGTGTGTGTGTGTTTGTATGTCT..........................................................................................................................	23	6	0.17	0.17	0.00	0.00	0.00
................................GTTTGTGCGTGTGTTTGTGT..............................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
............................GTGCGTGTATGTGTGTGC....................................................................................................................................	18	32	0.03	0.03	0.00	0.00	0.00
...................................TGTGTGTGTGTTTGTGTGA............................................................................................................................	19	226	0.00	0.00	0.00	0.00	0.00
.................................TGTGTGTATGTGTTTGTGTTT............................................................................................................................	21	9	0.11	0.11	0.00	0.00	0.00
.................................................................................................................................................................................T	19	36	0.03	0.03	0.00	0.00	0.00
..................................CTGTATGTGTGTTTGTGTGTG...........................................................................................................................	21	25	0.04	0.00	0.04	0.00	0.00
.................................TGTGTGTGTGTGTTTGTGAGC............................................................................................................................	21	20	0.05	0.00	0.05	0.00	0.00
.................................TGTGTGTGTGTGTTTGTGTG.............................................................................................................................	20	145	0.01	0.00	0.00	0.00	0.01
......................................GTGTGTGTTTGTGTGTGT..........................................................................................................................	18	189	0.01	0.00	0.01	0.00	0.00
............................GTGCGTGTGTGTGTGTGT....................................................................................................................................	18	189	0.01	0.00	0.00	0.01	0.00
.................................TGTGTGTCTGTGTTTGTGTTT............................................................................................................................	21	9	0.11	0.00	0.00	0.11	0.00
..................................GTGTGTGTGTGTTGGTGTT.............................................................................................................................	19	24	0.04	0.04	0.00	0.00	0.00
.................................TGTGTGTGTGTGTTTGTGTAG............................................................................................................................	21	33	0.03	0.00	0.00	0.03	0.00
....................................GTGTGTTTATTTGTGTGTGT..........................................................................................................................	20	11	0.09	0.00	0.00	0.00	0.09
...........................TGTGCGTGTGTGTGTGTATCT..................................................................................................................................	21	16	0.06	0.06	0.00	0.00	0.00
....................................GTGTATGTGTTTGTGTATGT..........................................................................................................................	20	22	0.05	0.05	0.00	0.00	0.00
.................................TCAGTGTGTGTGTTTGTGTGT............................................................................................................................	21	18	0.06	0.06	0.00	0.00	0.00
..................................GTGTGGTTGTGTTTGTGTG.............................................................................................................................	19	11	0.09	0.09	0.00	0.00	0.00
..................................GTGTGTGTGTGTTTGTGTGT............................................................................................................................	20	132	0.01	0.01	0.00	0.00	0.00
...........................TGTGAGTGTGTGTGTGTATTT..................................................................................................................................	21	22	0.05	0.00	0.05	0.00	0.00
.............................TGGGTGTGTGTGTATGTTT..................................................................................................................................	19	30	0.03	0.00	0.03	0.00	0.00
..................................GAGTGTGTGGGTTTGTGT..............................................................................................................................	18	8	0.13	0.13	0.00	0.00	0.00
.....................................TGTTTGTGTATGTGTGTGTC.........................................................................................................................	20	17	0.06	0.00	0.00	0.06	0.00
..........................TTGTGCCTGTGTGTGTGTAT....................................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
................................GTGTGTGTGTGTGATTGTGT..............................................................................................................................	20	140	0.01	0.01	0.00	0.00	0.00
....................................CTGTGTGTGTTTGTGTGCG...........................................................................................................................	19	27	0.04	0.00	0.00	0.00	0.04
...................................TGTGAGTGTGTTAGTGTGTGT..........................................................................................................................	21	7	0.14	0.14	0.00	0.00	0.00
...............................CGTGTGTGTATGTGTTCGTG...............................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50
.........................CTTGTGCGTGTGTGTGAGT......................................................................................................................................	19	4	0.25	0.25	0.00	0.00	0.00
.................................CGTGTGTGTGTGTTTGTGTGTT...........................................................................................................................	22	15	0.07	0.07	0.00	0.00	0.00
.................................TGTGTGTGTGTGTTTGTGTTC............................................................................................................................	21	30	0.03	0.03	0.00	0.00	0.00
..................................GTGTGTTTGTGCTTGTGTG.............................................................................................................................	19	6	0.17	0.00	0.17	0.00	0.00
................................................................................................................................................................................AT	24	43	0.02	0.02	0.00	0.00	0.00
.................................TGTGTGTGTGTGATTGTGTGG............................................................................................................................	21	7	0.14	0.00	0.14	0.00	0.00
.................................CGTGTGTGTGTGTTTGTGTGA............................................................................................................................	21	8	0.13	0.13	0.00	0.00	0.00
...............................CGTGTGTGTGTTTGTTTT.................................................................................................................................	18	13	0.08	0.00	0.00	0.00	0.08
...............................................................................................................................................................................AAA	19	3	0.33	0.00	0.00	0.33	0.00
.................................TATGTGAGTGTGTTTGTGT..............................................................................................................................	19	30	0.03	0.03	0.00	0.00	0.00
...............................CGTGTGCGTGTGTGTTTGTC...............................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
.............................TGGGTGTGTGTGTGGGTTTGTG...............................................................................................................................	22	2	0.50	0.00	0.00	0.50	0.00
.................................TGCGTATGTGTGTTTGTGTG.............................................................................................................................	20	7	0.14	0.00	0.00	0.14	0.00
..........................TTGTGCATGTGTGCGTGTGTT...................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................................................................................A	21	4	0.25	0.25	0.00	0.00	0.00
..........................TTGAGCGTGTGCGTGTGTG.....................................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
.................................TGTATGTGTGTGTTTGTGTGT............................................................................................................................	21	163	0.01	0.01	0.00	0.00	0.00
...................................TGTGTATGTGTTTGTGTATGT..........................................................................................................................	21	15	0.07	0.07	0.00	0.00	0.00
...........................TGTGCATGTGTGTGTGTG.....................................................................................................................................	18	17	0.06	0.00	0.06	0.00	0.00
.................................TGTGTGTGTGTGTTTGTGTGTG...........................................................................................................................	22	102	0.01	0.00	0.01	0.00	0.00
.................................TGTGTGTGTGTGTTTGTGTAA............................................................................................................................	21	30	0.03	0.03	0.00	0.00	0.00
....................................GTGTGTGTGTTTGTGTGGGTA.........................................................................................................................	21	19	0.05	0.05	0.00	0.00	0.00
.......................................TGTGTGTTTGTGTGTGTGAC.......................................................................................................................	20	17	0.06	0.00	0.00	0.06	0.00
...........................TGTGCGTGTGTTTGTGTGT....................................................................................................................................	19	189	0.01	0.01	0.00	0.00	0.00
............................ATGCGTGTGTCTGTGTGT....................................................................................................................................	18	48	0.02	0.00	0.02	0.00	0.00
................................................................................................................................................................................AT	20	46	0.02	0.02	0.00	0.00	0.00
................................................................................................................................................................................CA	20	16	0.06	0.06	0.00	0.00	0.00
...........................TGTGCGTGTGGGTGTGTTT....................................................................................................................................	19	11	0.09	0.09	0.00	0.00	0.00
............................GTACGAGTGTGTGTGTGT....................................................................................................................................	18	21	0.05	0.05	0.00	0.00	0.00
...............................AGTGTGTGTGTGTGTTAG.................................................................................................................................	18	31	0.03	0.03	0.00	0.00	0.00
............................GTGCGTGCGTGTGCGTGT....................................................................................................................................	18	7	0.14	0.00	0.14	0.00	0.00
...........................TGTGAGTGTGTGTGTGTATT...................................................................................................................................	20	34	0.03	0.03	0.00	0.00	0.00
................................................................................................................................................................................AA	24	3	0.33	0.00	0.00	0.00	0.33
....................................GTTTGTGTGCTTGTGTGTGT..........................................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00
...................................TGTGAATGTGTTTGTGTGTG...........................................................................................................................	20	10	0.10	0.00	0.10	0.00	0.00
...........................TGTGCGTGTGTGTGTGT......................................................................................................................................	17	248	0.00	0.00	0.00	0.00	0.00
................................GTGTGTGTATGTGTTTGTGTA.............................................................................................................................	21	18	0.06	0.06	0.00	0.00	0.00
.................................TGTGTGTGTATGTTTGTGT..............................................................................................................................	19	219	0.00	0.00	0.00	0.00	0.00
....................................GTGTGTGTGTTTGTGTGTGT..........................................................................................................................	20	131	0.01	0.01	0.00	0.00	0.00

scaffold_6473:3569405-3569517 -

33.07

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAAC------AGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTA--GTAATCAAATTGCACAA
G---------------------------------GAAAAACGTTTTTCGTTGCCTGCTTTTAGGGGCTGGCGAGAAAAAGGCCAACGACTCTTGTGATTT---TGACTTGGCGGCATTTGATTTAATTTTAAACTGATTAAATTTAAC--

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

118

scaffold_6496:18213184-18213368 -

31.8

GGCGCGC------ACTGGTGTGTGTGTGTGAG-------------------TGTGG-------------------GTGGAAAATCGGATTTCGTAAAACGCATT--TAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGT-AATCAAATTGCACAA GT-GTTCTCAGCGATTCACATGTACATGTGAGCATCGTCTCATATGTAGAGCATAGATAATTAAAAAGGCTATTCATAGATAATAGAGTGGAAAACAATTCATTACTACTTGATATTAAAGGCAAAAATAAATAGAGTATAATTAAGTAATTGATATCGAAAA---AGTGAGAAGATAAAATTAAAAAG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................................................................................................................GATATAGAAAA---AGGGAGAAGA.............	21	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................................................................................ATAGAAAA---AGGGAGAAGA.............	18	2	0.50	0.50	0.00	0.00	0.00

133

scaffold_6540:33194487-33194573 -

30.71

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAAT-CGGATTT--CGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA G---------------TGTGAGTGAGTATGTGAGGGTGATTCGTGTTCTATGGAAAACTGAACGAACTGCTGATTGGGCAAAGAAAGTACGCAGTTTGCAT--------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...............................GAGGGTGATTCGTGTTCTATGG............................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.....................GTGAGTATGTGAGGGTGATTCGTGTT..................................................................................................	26	1	1.00	1.00	0.00	0.00	0.00
....................AGTGAGTxGGTGAGGGTGA..........................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
G---------------TGTGAGCGTGTATGTGA................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00

scaffold_6308:64901-64975 +

29.92

GGCGCGCACTG-GTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
GTTGTGCACAGCGAGTGGCCGAAGCGACGTTCATGGATACTTCATTTATGTAAAGCTT-TTAATTTGTTGGCAACA-------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6680:15590060-15590157 +

29.28

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TGGGTGTCTGTGTGTGTGTGTGTGAGGGAGAGCGAACGTT-A--ATTTG-------------------TGGAGTCATGCGAAGATTTGTAGCTTAT-----------------------TGTTTGGTCATTGGCTTAGTGAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........TGTGTGTGTGTGCGTGAGTGA.................................................................................................................	21	6	0.33	0.33	0.00	0.00	0.00
...ATGTCTGTGTGTGTGAGTG........................................................................................................................	19	34	0.03	0.03	0.00	0.00	0.00
.....GTCTGTGTGTATGTGCGT.......................................................................................................................	18	24	0.04	0.00	0.04	0.00	0.00
........TGTGTATGTGTGTGTGAGGCA.................................................................................................................	21	4	0.25	0.25	0.00	0.00	0.00
......TCTGTCTGTGTGTGTGTGAGT...................................................................................................................	21	29	0.03	0.00	0.03	0.00	0.00
.........GTGTGTGTGTGTGAAAGG...................................................................................................................	18	13	0.08	0.00	0.00	0.00	0.08
..........TGTGTGTGTGTGTGACGGAGC...............................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...........GTGTGTGTCTGTGAGAGA.................................................................................................................	18	6	0.17	0.17	0.00	0.00	0.00
....TGTCGGTCTGTGTGTGTGTG......................................................................................................................	20	14	0.07	0.00	0.00	0.07	0.00
...........GTGTGTGTGTGTGAGTGAGCG..............................................................................................................	21	11	0.09	0.09	0.00	0.00	0.00
.............GTATGTGTGTGAGTGAGA...............................................................................................................	18	8	0.13	0.13	0.00	0.00	0.00
......CCTGTGTGTGCGTGTGTG......................................................................................................................	18	41	0.02	0.00	0.00	0.02	0.00
.......CTGTGTGTGTGTGTGTCAG....................................................................................................................	19	30	0.03	0.03	0.00	0.00	0.00
..CGTGTCTGTGTGCGTGTGTGT.......................................................................................................................	21	13	0.08	0.08	0.00	0.00	0.00
........GGTGTGTGTGTGTGTAAG....................................................................................................................	18	34	0.03	0.03	0.00	0.00	0.00
...GTGTCAGCGTGTGTGTGT.........................................................................................................................	18	9	0.11	0.00	0.11	0.00	0.00
........TGTGTGTGTATGTGTGAGC...................................................................................................................	19	32	0.03	0.00	0.00	0.03	0.00
.......CTGTGTGTGTGTGTGAGAGAGAGA...............................................................................................................	24	3	0.33	0.33	0.00	0.00	0.00
.............GTGTGTGCGTGAGGGAGG...............................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
........TGTGTGTGTGTCTGTGAGA...................................................................................................................	19	15	0.07	0.00	0.07	0.00	0.00
......TCCGTGTGTGTGTGTGTGAGTG..................................................................................................................	22	12	0.08	0.00	0.00	0.00	0.08
TGGGTGTACGTGTGTGTG............................................................................................................................	18	16	0.06	0.00	0.00	0.06	0.00
..........................................................................................................................................TGAA	18	11	0.09	0.00	0.00	0.09	0.00
...GTGTCTGTGTGTGTGTG..........................................................................................................................	17	229	0.00	0.00	0.00	0.00	0.00
........AGTGTGTGTGTGTGTTAG....................................................................................................................	18	31	0.03	0.03	0.00	0.00	0.00
..GCTGTATGTGTGTGTGTGTGT.......................................................................................................................	21	36	0.03	0.03	0.00	0.00	0.00
..........TGTGTGTGTGCGTGAGTGAG................................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00
...GTATCCGTGTGTGTGTGTGT.......................................................................................................................	20	27	0.04	0.04	0.00	0.00	0.00
........TGTGTGTGTGTGTGTGAGTTA.................................................................................................................	21	31	0.03	0.03	0.00	0.00	0.00
.....GxxTGTGTGTTAGTGTGTGAGG...................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.....GTCTGTCTGGGTGTGTGTG......................................................................................................................	19	17	0.06	0.00	0.06	0.00	0.00
........TGTGTATGTGTGTGTGAGGGT.................................................................................................................	21	9	0.11	0.00	0.11	0.00	0.00
.......CTGTGTGTGTTTGTGTGCG....................................................................................................................	19	27	0.04	0.00	0.00	0.00	0.04

scaffold_6496:3135191-3135283 +

25.26

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GAAGAACAGCG-------------ATTGAAGGAGGAACAACTGAAGGAGGAACAATTAAAG------CAAGAGCAACTGAAGCTAGAACAGTTG------------------------------AAGCAACAGCAGGAGCAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
......................................GACCGAAGGAGGAACAAT......................................................................................	18	1	11.00	7.00	3.00	1.00	0.00
..............................GGAGGAAGAACTGAAGGT..............................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.......................................................................AGCAACTGAAGCTGGAGCAG...................................................	20	8	0.13	0.13	0.00	0.00	0.00
.......................................ACCGAAGGAGGAACAATGA....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.............................................................................................G------------------------------AAGCAAGAGCAGGAGGA.	18	28	0.04	0.04	0.00	0.00	0.00
...............................GAGGAACAATTGGAGG...............................................................................................	16	2	0.50	0.00	0.50	0.00	0.00
............................................................................................................................AAGCAACAGCAAGAGGAA	18	14	0.07	0.00	0.07	0.00	0.00
......................................................................................ATCAGGTG------------------------------AAGCAACAGCAGGAGCA.	25	1	1.00	1.00	0.00	0.00	0.00

124

scaffold_6500:1945348-1945402 -

21.9

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
---------------------------------------------------------------------------------ATATTTGTAATTTAACTTAATATTTAATAT------TGCGATTCATAAAAAAAATACATAA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2 - 26 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

108

scaffold_15252:15271605-15271725 -

45.87

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA T------------GTGTATGTGTGTGTGTGTCTATGTTATCGTTTGCTGTGACTTGCAAATAAAATTTGACTACTGCTAACAGT----TATCTCTCTCTCTCTCTCTCTGTCGCACACACATTT-----ACACAGTGCAAGT	Size	Hit Count	Total Norm	V109 Male body
T------------GTGTTTGTTTGTGTGTGTC..............................................................................................................	20	27	0.04	0.04
..............TGCATGTGTGTGTGTGTGTATG..........................................................................................................	22	40	0.03	0.03
................TGTGTGTGTGAGTGTCTATGT.........................................................................................................	21	22	0.05	0.05
A------------GTGTATGTGTGTGTGTGT...............................................................................................................	19	23	0.04	0.04

scaffold_14853:9265590-9265734 +

44.36

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTC-----------------------------------------TACATCTCACTTACAGTTAGTAATCAAATTGCACAA GTCTACCATTCTCTTTGCTGTTTGAATGTCTATTAACATACATATTTA--------------------------------------TGTATGATACCTGTTTGTCCACACACATACACACACACACACACACACACATATACATACATACACTTTGAGCGCTGTATAGAATCAGTAAGCAGCG	Size	Hit Count	Total Norm	V109 Male body
.......................................................................................................................CAAACACACACACACACATA............................................	20	45	0.02	0.02
.................................................................................................................TACACACACACACACACGCG..................................................	20	42	0.02	0.02

scaffold_14624:2967180-2967302 +

41.78

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCA-------AAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAG--TTAGTAATCAAATTGCACAA G-CGCGTGTGTGTGTATGTGTGTGTGTGTGTGTGTG----------------AGTGTATTAGGGTGCTGTTGGTGACTCTTTAAAACATTGTGCGAAGGTTGCTTTGGTCG-----------CCTGCGAGAGTATTTGTCAAA-AGCTTAA	Size	Hit Count	Total Norm	V109 Male body
.......TTGTGTGCATGTGTGTGTGTG...........................................................................................................................	21	21	0.14	0.14
..............CATGTGCGTGTGTGTGTGTGTG----------------...................................................................................................	22	44	0.05	0.05
.............GTAAGTGTGTGCGTGTGTGTG.....................................................................................................................	21	15	0.07	0.07
...............ATGTGCGTGTGCGTGTGTGT....................................................................................................................	20	51	0.02	0.02
...............ATGTGTGTGTTTGTGTATGTG----------------...................................................................................................	21	50	0.02	0.02
...................GTGTGTGTGTGAGTGCG----------------AGTG...............................................................................................	21	11	0.09	0.09
..................TGTGTGTGTGTGTGAGTG----------------AGA................................................................................................	21	29	0.03	0.03
.............GTATGTGCGTGTGCGTGTGTGTG----------------...................................................................................................	23	13	0.08	0.08
..CGCGTGTGTTTGTATGTGTGTGTGT............................................................................................................................	25	1	1.00	1.00
.................ATGTGTGTGTGTGTGTGTA----------------AGTGT..............................................................................................	24	37	0.03	0.03
.......................TTGTGCGTGTGTG----------------AGTGT..............................................................................................	18	29	0.03	0.03
......................TGTGTGTGTGxGTG----------------AGTGTGTT...........................................................................................	21	24	0.04	0.04
.......TTGTGTGCATGTGTGTGTGTGT..........................................................................................................................	22	18	0.06	0.06
............TGCATGTGTGTGTGTGTGTATG.....................................................................................................................	22	40	0.03	0.03
.........ATGTGTATGTGTATGTGTGTGTG.......................................................................................................................	23	49	0.02	0.02
............TGTATGTGTATGTGTGTGTG.......................................................................................................................	20	37	0.03	0.03
.............GTATGTGTCTGTATGTGTGTGT....................................................................................................................	22	19	0.05	0.05
.........TTGTGTATGTGTGTGTTTGT..........................................................................................................................	20	34	0.03	0.03
....................TTTGTGAGTGTGTGTG----------------AGTGT..............................................................................................	21	5	0.20	0.20
....CGTGTGTGTGTTGGTGTGTG...............................................................................................................................	20	10	0.10	0.10
................TGTGTGTGTGTGTGAGTGAG----------------A..................................................................................................	21	29	0.03	0.03
.........GAGTGTATGTCTGTGTGTG...........................................................................................................................	19	18	0.06	0.06
............TGTATTGGTGTGTGTGTGTGTG.....................................................................................................................	22	21	0.05	0.05
...........GTGTATGTGTGTGTTAGTGTG.......................................................................................................................	21	18	0.06	0.06
............TCTATGTGTGTGTGTGTGTGTG.....................................................................................................................	22	45	0.02	0.02
.........GTGTGTATGTGTGTGAGTATGTG.......................................................................................................................	23	13	0.08	0.08
..............TATGTGTGTGTGTGTGTGTG.....................................................................................................................	20	32	0.03	0.03
G-CGTGTGTGTGTGTATGTGTGTGAGT............................................................................................................................	26	6	0.17	0.17
............TGTAAGTGTGTTTGTGTGTG.......................................................................................................................	20	25	0.04	0.04
.................GTGTGTGAGTGTGTGTGTG----------------GGTGTA.............................................................................................	25	16	0.06	0.06
...................GTGCGTGTGTGAGTGTG----------------AG.................................................................................................	19	14	0.07	0.07
..CGAGTGTGTGTGTATGTGTGTA...............................................................................................................................	22	3	0.33	0.33
.........GCGTGTATGTGTGTGTGTGTA.........................................................................................................................	21	33	0.03	0.03
......TGTATGTGTATGTGTGTGTG.............................................................................................................................	20	37	0.03	0.03
.....................GTGTGTGTGTGTGTG----------------AGTT...............................................................................................	19	309	0.00	0.00
.........GTGTGTATGTGTGTATGAGTG.........................................................................................................................	21	13	0.08	0.08
...................GTGTGTATGTGTGTATG----------------AGTG...............................................................................................	21	13	0.08	0.08
..................AGTGTGCGTGTGTGTGTG----------------A..................................................................................................	19	22	0.05	0.05
....CTTGTGTGTGTATGTATGT................................................................................................................................	19	11	0.09	0.09
..........TGTGTATCTGTGTGTGTGTG.........................................................................................................................	20	25	0.04	0.04
..................TGTGTGTGTGTGTGTGTG----------------AGT................................................................................................	21	177	0.01	0.01
.........GTGTGTACGGGTGTGTGTGT..........................................................................................................................	20	10	0.10	0.10
......CGTGTGTGTATGTGTGTGTG.............................................................................................................................	20	246	0.00	0.00
...............ATGTGTGTGTGTGAGTGTGT....................................................................................................................	20	43	0.02	0.02
.....GTGTGTGTGTATGTGCGTGTGTGTT.........................................................................................................................	25	10	0.10	0.10
.............GAATGTGTGTGTGTGTGT........................................................................................................................	18	37	0.03	0.03
..CTCGTGTGTGTGTGTGTGT..................................................................................................................................	19	51	0.02	0.02
..............TATGTGTGAGTGTGTGTGTG.....................................................................................................................	20	37	0.03	0.03
....................CGTGTGTGTGTGTGTG----------------AG.................................................................................................	18	18	0.06	0.06
.......GTGTGTGTAAGTGTGTGCG.............................................................................................................................	19	24	0.04	0.04
..........AGTGTATGTGTGTGTGTGT..........................................................................................................................	19	23	0.04	0.04

scaffold_15203:5490442-5490573 -

40.6

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATT---GTTAA---CAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA GTTTCTTTCTTATTTTTTTTTGTTTTTTTGGTTGGTTGGTTATTGCTTGT-----------TGTTGTCGTGAACGAAAGAGGCGAACAA--ATGTGAGCGACATTCC---TTCCAACAAAACCCACAGCGAAGACCCAATTCCCCACA	Size	Hit Count	Total Norm	V109 Male body
..............................................TTGT-----------TGTTGTCGTGGTCGA........................................................................	19	4	0.25	0.25

scaffold_15126:3003079-3003192 -

39.04

GGCGCGCACTG---GTGTG-TGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATT-TAATTGTTAACAG-CAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAA-TTGCACAA AGCGAGAACAGCAAATGCGACAAGCAAAAGAGCAGGCAACAAATCGAA------AAAGCGCTTTTTGACGGTTGAACGTCCGCAGG--------------TCCTGAGT----------TCATTCACCGTTGAA-ACCAAAAT----CAA	Size	Hit Count	Total Norm	V109 Male body
..................................................................................CAGG--------------TCGTGAGT----------TCAATC.........................	18	1	9.00	9.00
...................................................................................AGG--------------TCGTGAGT----------TCATTCC........................	18	1	3.00	3.00
.................................................................................CCAGG--------------TCGTGAGT----------TCATTC.........................	19	1	2.00	2.00
..................................................................................CAGG--------------TCGTGAGT----------TCATTCC........................	19	1	1.00	1.00

scaffold_15203:5511108-5511235 +

38.46

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGG---ATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
CGCGTACACTT---TTTACTTGTCGTTGTTGGCAGTCTCTCTTTGCCTCTCTTC-AAAATATTTGTTCG----C-GTAACTCACTCTCG-----CTCTCTCTCTCCCCCTCTCTCTCGCTCTCTCTCTATAACACACTCGTA---

Size

Hit Count

Total Norm

V109
Male body

scaffold_15074:254134-254296 +

38.23

GGCGCGCACTG-----------------------GTGTGTGTGTGTGAGTGTGGGTGGAA--AATCGGA-TTTCGTAAAACGCATTTAATTGT--TAACAGCAGCAAAAACGT-GTATAATTTACCTGATTTTTCTACA-TCTCACTTACAGTTAGTAATCAAATTGCACAA
GGTGCATATGGTATATTTATATATAAATATAAATATGTACATATATGTATATAGCTGGGGTAAATCAAGAAATT----AATCCCTTCAACAGCTGCGACAGCAGCAAACAAATAATGAAACATATTTGTGCGCCTTATGAACTCAACAATGGATGGAAATCAAGCTG-----

Size

Hit Count

Total Norm

V109
Male body

scaffold_14830:578161-578274 -

35.38

GGCGCGCACTGGTG-TGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTA-AAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAAT-TGCACAA
AGTGCGCATAAATTTCGTAAGCTCCAATTTTGATGGAAAATTGATATGTGCACATACACATACATTTATGATGTACAAAACACATATGTATATATAT------------------------------GTATATATATATATA-TA

Size

Hit Count

Total Norm

V109
Male body

scaffold_15203:3301818-3301931 +

34.49

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTA--------------------ATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TTTGCACATTTAGCTGGCCTTGTAAATTCGGTTGTTGTTGT-TGTGTCGTATAATTAATTAAAAATCGATAAGATTTTGATTTGGTTTAACGGCTTT----------------------------------------------C-AGAATTATGATGCTTAG	Size	Hit Count	Total Norm	V109 Male body
..........................TTAGGTTGTTGGTGT-TGTG....................................................................................................................	19	1	1.00	1.00

scaffold_14624:3578430-3578602 -

31.76

GGCGCGCACTGGTGTGTGTGTGTGAGTGT-GGGTGGAAAATCGGATTTCGTAAAACGCATT------TAATTGTTAACAGCAGCAAAAACGT------GTATAATTTACCT-G-------------------------------ATTTTTCTACATC----------TCACTTACAGTTAGTAATCAAATTGCACAA
G-----------------------AGAGTGGGGCAAAGAGCTGGGGCAAGCCAAGCGCAACGTAATCGAAGCGCATAAAGAAACGGAAATGCGATTGCGAACAATTTATTATGGCTGCAATTGTGAGAGACTCTCTCTCTTTCTCTCTCTCTCTCTCTCCCGCACAATCACTCTAAGTCTACA-CACACTCACACAG

Size

Hit Count

Total Norm

V109
Male body

scaffold_15110:505116-505196 -

29.27

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACT-----------TACAGTTAGTAATCAAATTGCACAA
AGC--------------------------------------------------------------------AGCAGAAGAA----GAATAAATTATTCAATTACTAAATATATAAATGAAAAAAAAGAAACAACAAATAAATAAAGTGCAACA

Size

Hit Count

Total Norm

V109
Male body

scaffold_15116:700809-700896 -

21.71

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAAC--GCATTTAATTGTT--AACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TGC--------------------------------CAAATCG-AATTCGAACAACTTGCGTCAAATCGAATAAAACTCGGGCAAAATGTGTGAAAAAAA------------------------TGGC-AACGAACGAATTGAACG-	Size	Hit Count	Total Norm	V109 Male body
.................................................................................................AA------------------------TGGC-AGCGAACGGATT......	18	1	1.00	1.00

scaffold_15081:1621525-1621563 -

19.29

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TACGCGTCTGTCTGTGTGTGTGTGTGTGTGTGTGTGAAA-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V109 Male body
..................TGTGTGTGTGTGTGTGCGAAG-------------------------------------------------------------------------------------------------------	21	16	0.06	0.06
................TGTGTGTGTGTGTGAGTGAGA.........................................................................................................	21	29	0.03	0.03
...................GTGCGTGTGTGTGTGTGTAA-------------------------------------------------------------------------------------------------------	21	19	0.05	0.05
...........CTGTGTGTGTGTGTGTGTGCCT.............................................................................................................	22	30	0.03	0.03
.................GTGCGTGTGTGTGTGTGTAAA........................................................................................................	21	19	0.05	0.05
..........TCTATGTGTGTGTGTATGTGTGTGT...........................................................................................................	25	39	0.03	0.03
..................TGTGTGTGTGTGTGTGCGAAT-------------------------------------------------------------------------------------------------------	22	21	0.05	0.05
..........GCTGTGTGTGTGTGTGCGTGTG..............................................................................................................	22	25	0.04	0.04
..................AGTGTGCGTGTGTGTGTGA.........................................................................................................	19	22	0.05	0.05
..............TGTGTGCGTGTGTGTGTGTGTGAAG-------------------------------------------------------------------------------------------------------	25	2	0.50	0.50
...........CTGTGTGAGTGTGTGTGTCTG..............................................................................................................	21	17	0.06	0.06
....................TGTGTGTGTGTGTGTGCGA-------------------------------------------------------------------------------------------------------	21	16	0.06	0.06
..........GCTGTGTGTGTGCGTGTGTGTGTG............................................................................................................	24	18	0.06	0.06
..........TCTATGTGTGTGTGTGTGTGTG..............................................................................................................	22	45	0.02	0.02
.....GCCTGTCTGTGTGTGAGTGT.....................................................................................................................	20	3	0.33	0.33
..................TGTGTGTGTGTGTGAGTGAGA-------------------------------------------------------------------------------------------------------	21	29	0.03	0.03

scaffold_15081:3589088-3589121 +

17.86

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TGTGTGTATCTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V109 Male body
...............GTGTGTGTGTGTTTCTGTG------------------------------------------------------------------------------------------------------------	21	2	0.50	0.50
........GCTGTGTGTGTGCGTGTGTGTGTG..............................................................................................................	24	18	0.06	0.06
..TGTGTATCTGTGTGTGTGTG........................................................................................................................	20	25	0.04	0.04
........TCTATGTGTGTGTGTGTGTGTG................................................................................................................	22	45	0.02	0.02
....TGTATTGGTGTGTGTGTGTGTG....................................................................................................................	22	21	0.05	0.05
..............TGTGTGTGTGTGTGAGTGAG------------------------------------------------------------------------------------------------------------	21	29	0.03	0.03
........GCTGTGTGTGTGTGTGCGTGTG................................................................................................................	22	25	0.04	0.04
.........CTGTGTGAGTGTGTGTGTCTG................................................................................................................	21	17	0.06	0.06
................AGTGTGCGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	19	22	0.05	0.05
.........CTGTGTGTGTGTGTGTGTGCCT...............................................................................................................	22	30	0.03	0.03
........TCTATGTGTGTGTGTATGTGTGTGT.............................................................................................................	25	39	0.03	0.03

scaffold_15081:659585-659622 -

17.86

GGCGCGCAC----TGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA TGCGTGCTTCCATCTGTGTGTATGTGTATGTGTGTGTG------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V109 Male body
..................TGTATGTGTATGTGTGTGTG------------------------------------------------------------------------------------------------------------	20	37	0.03	0.03
...............ATGTGTATGTGTATGTGTGTGTG------------------------------------------------------------------------------------------------------------	23	49	0.02	0.02
..................TGTATGTGTATGTGTGTGTC------------------------------------------------------------------------------------------------------------	20	54	0.02	0.02
..................TGTATGTGTATTTGTGTGTG------------------------------------------------------------------------------------------------------------	21	4	0.25	0.25
............TCTATGTGTGTGTGTATGTGTGTGT.............................................................................................................	25	39	0.03	0.03
...............GTGTGTATxTGTATGCGTGTG..............................................................................................................	20	4	0.25	0.25
......................TGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	22	21	0.05	0.05
...........ATGTGTGTGTTTGTGTATGTG..................................................................................................................	21	50	0.02	0.02
.............ATGTGTATATGTGTATGTGTG................................................................................................................	21	16	0.06	0.06

scaffold_15110:770407-770440 +

17.14

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA ATTGTGTATTAGAGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V109 Male body
..................TGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	19	37	0.05	0.05
..............TGTGTGTGTGxGTGAGTGTG------------------------------------------------------------------------------------------------------------	21	24	0.08	0.08
............AGTGTGCGTGTGTGTGTG................................................................................................................	18	321	0.01	0.01
................TGTGTGTGTGTGTGTGCG------------------------------------------------------------------------------------------------------------	21	7	0.14	0.14
................TGTGTGCGTGCGTGTGTG------------------------------------------------------------------------------------------------------------	21	14	0.07	0.07
............AGTGTATGTGTGTGTGTGT...............................................................................................................	19	23	0.04	0.04
....TGTATTGGTGTGTGTGTGTGTG....................................................................................................................	22	21	0.05	0.05
...................GTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	21	25	0.04	0.04
...........AAGTGTGTGCGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	24	29	0.03	0.03
........TTTGAGTGTGTGTGTGTTTGTGT...............................................................................................................	23	12	0.08	0.08
..........ATAGTGTGTGTGCGTGTGTG................................................................................................................	20	8	0.13	0.13
.................GTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	20	24	0.04	0.04
............ATTGTGTGTGTGTGTGTTTGTG------------------------------------------------------------------------------------------------------------	22	21	0.05	0.05
...........GAGTGTATGTCTGTGTGTG................................................................................................................	19	18	0.06	0.06
......................TGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	22	13	0.08	0.08
............AGTGTGTGTGTGTGTGTA................................................................................................................	18	49	0.02	0.02
..............TGTGTGTGTGTACGTGTGTG------------------------------------------------------------------------------------------------------------	22	22	0.05	0.05
............AGTGCGTGCGTGTGTGTGTGT.............................................................................................................	21	13	0.08	0.08
...........GAATGTGTGTGTGTGTGT.................................................................................................................	18	37	0.03	0.03
........TTTGAGTGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	26	94	0.01	0.01
............AGTGTGCGTGTGTGTGTGA...............................................................................................................	19	22	0.05	0.05
..............TGTGTGTGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	23	12	0.08	0.08
....................TGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	22	13	0.08	0.08
............AGTGCGTGCGTGTGTGTGTGTG------------------------------------------------------------------------------------------------------------	22	9	0.11	0.11

scaffold_15203:7873715-7873762 +

16.21

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
G-----------TTTGTATGTGTCTGTTTATATGGACAATTCAATATTTTAATATATA------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

scaffold_15110:16493942-16494014 +

15.42

GGC---GCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTC-GTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCAC---------------AA TTTTATGTTTGTCTGTATGCCTGTGTGATTGTCTACTATATAACTGATATTAGT----------------------------------------------------------------------------------------TTAAACACGAAACAACAAA	Size	Hit Count	Total Norm	V109 Male body
....ATGTTTGTCTGTATGCCTGTGTGATT...................................................................................................................................	26	1	1.00	1.00

scaffold_15115:895-926 -

12.86

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
TCTCAATAATGTTGTGTG--------------------------------------------------------------------------------------------------------------ATAAATCGAAACAA

Size

Hit Count

Total Norm

V109
Male body

None

104

scaffold_15252:12241273-12241289 -

9.11

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA --------------------------------------------------------------------------------------------------------------------------TTTGTAAGCAAATTGAA---	Size	Hit Count	Total Norm	V109 Male body
........................................................................................................................................GAA---	18	37	0.03	0.03
..........................................................................................................................................T---	20	34	0.03	0.03
.......................................................................................................................................TGTA---	20	37	0.03	0.03
........................................................................................................................................CAA---	21	8	0.13	0.13

None

scaffold_15245:11495020-11495036 +

8.1

GGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAGTTAGTAATCAAATTGCACAA
AGCAA----------------------------------TTGGA-------------------------------------------------------------------------------------------TGCAAAA

Size

Hit Count

Total Norm

V109
Male body

None

Generated: 04/20/2012 at 05:31:07 EDT