sblock154733- 12- and 20-way alignments

sblock154733	chr3R:20518218-20518323 +	Candidate
	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 20518242-20518265
   star strand at position 20518278-20518305
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3R:20518203-20518338 +	TACACCATGAACAACATAAGATT--------------TATTCGGTCT--ACAAACTGAAGCTTAATTGTGATTTATGGATGTGTATTTTTTAGCAGTTAAAAATCACAATTTAGCCACT-TTGTAG-GTCGATGA-------A--ACAGCT----------------CACAACTCTCAC
droSim1	chr3R_random:984803-984937 +	TACACCATGAACAACATAAGATA--------------TATTCGGTCT--ACAAACTGAAGCTTAATTGTGATTTAAGGATGTGTATTTTTTAGCACTAAAAAATCACAATTTAGCCAAT-TTGTAG-GTCGAT-A-------A--AAACCA----------------CACAACTCTCAC
droSec1	super_0:20852363-20852498 +	TACACCATGAACAACATAAGATA--------------TATTCGGTCT--ACAAACTGAAGCTTAATTGTGATTTAAGGATGTGTATTTTTTTGCACTAAAAAATCACAATTTAGCCAAT-TTGTAG-GTCGATGA-------A--AAACCA----------------CACAACTCTCAC
droYak2	chr3R:25978425-25978557 -	TACACCA---ACAACATAAGATA--------------TATTCGGCAT--ACAAACTTGAGCTTAATTGTGATTTAAGGATGTGAATT-TCAAGCAACGAAAAATCACAATGAAGCCAATTTTGTAG-GCCGATGG-------A--ACACCT----------------CACAACTCTCAC
droEre2	scaffold_4820:7539900-7540034 -	CACACCATGAACAACATAAGATA--------------TATTCGGCCT--ACAAACATAAGCATAATTGTGATTTAAGGATGTATATT-TCAAGTAGTAATACATCACAATTTAGCCAAT-TTGTAG-GCCGATGA-------A--AAACCT----------------CACAACTCTCAC
droAna3	scaffold_13340:4657405-4657499 -	TACACCATGTCTGACTTGA--------------------------------------AAATTTAATTGTGATTTGGTTT------------------TTTGAATCACAATTAAGTTT---TTTTAA-GCCGGA-A-------AACACACAT----------------TTCAACTCTCAC
dp4	chr2:1714385-1714528 -	TAGACCATGAACAACATAAGAAAAACTTACACACGTTTCTCTGGTTTATACAAAATCAAGTTTCATTGTGATTGGAGCCT---TATATTTTGGGATAATCCAATCACAATCAAGCTTC--CTGTACAACCCATGA-------G--AG---------------------ACAATTCACAC
droPer1	super_7:1868921-1869065 -	TACACCATGAACAACATAAGAAAAACTTACACACGTTTCTCTGGTTTATACAAAATGAAGTTTCATTGTGATTGGAGCCTATAT--GTTCTGGGATAATCCAATCACAATCAAGCTTC--CTGTACAACCCATGA-------G--AG---------------------ACAATTCACAC
droWil1	scaffold_181089:9576497-9576520 -	caaagac---------------a---------------------------------------------------------------------------------------------------------------------------c-act----------------cacaatccacac
droVir3	scaffold_13047:824149-824226 +	TAC--CAACAACAA------ATA--------------Caaaaaaaaa--aaa-------------------------------------------aaaaaacaaa------------------------acaaaa-------a--aaaCAATACAATATGTAacactcgc-ataaacac
droMoj3	scaffold_6540:4819885-4819951 +	TAC--------CAAAACAAAATA--------------CACTCAAACA--ACA-------------------------------------------ACAAAAAAACACAA------------------------GAATTATTCA--AAACAA-------------------TATAAacac
droGri2	scaffold_14906:5486805-5486840 -	TACAAAAAAACCAACTA-----------------------------------------------------------------------------------------------------------------------------A--AAACAC----------------AAATACACATAC

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3R:20518203-20518338 +	NA	TACACCATGAA----CAACAT--AAGATTTA---------T-T-------------------------CGGTCT--ACAAACTGAAGCTTAATTGTGATTTATG-G------------------------------------ATGTGTATTTT--T--TA---------------------GC--A--GTTAAAAA-----------------TCACAATTTAGCCAC-------------TTTGTAG-GTCGATGAAA-----------------------------CAGC----------TCAC-AACTCTCAC
droSim1	chr3R_random:984803-984937 +	64	TACACCATGAA----CAACAT--AAGATATA---------T-T-------------------------CGGTCT--ACAAACTGAAGCTTAATTGTGATTTAAG-G------------------------------------ATGTGTATTTT--T--TA---------------------GC--A--CTAAAAAA-----------------TCACAATTTAGCCAA-------------TTTGTAG-GTCGAT-AAA-----------------------------AACC----------ACAC-AACTCTCAC
droSec1	super_0:20852363-20852498 +	83	TACACCATGAA----CAACAT--AAGATATA---------T-T-------------------------CGGTCT--ACAAACTGAAGCTTAATTGTGATTTAAG-G------------------------------------ATGTGTATTTT--T--TT---------------------GC--A--CTAAAAAA-----------------TCACAATTTAGCCAA-------------TTTGTAG-GTCGATGAAA-----------------------------AACC----------ACAC-AACTCTCAC
droYak2	chr3R:25978425-25978557 -	899	TACACCA---A----CAACAT--AAGATATA---------T-T-------------------------CGGCAT--ACAAACTTGAGCTTAATTGTGATTTAAG-G------------------------------------ATGTGAATTTC-----AA---------------------GC--A--ACGAAAAA-----------------TCACAATGAAGCCAA------------TTTTGTAG-GCCGATGGAA-----------------------------CACC----------TCAC-AACTCTCAC
droEre2	scaffold_4820:7539900-7540034 -	2876	CACACCATGAA----CAACAT--AAGATATA---------T-T-------------------------CGGCCT--ACAAACATAAGCATAATTGTGATTTAAG-G------------------------------------ATGTATATTTC-----AA---------------------GT--A--GTAATACA-----------------TCACAATTTAGCCAA-------------TTTGTAG-GCCGATGAAA-----------------------------AACC----------TCAC-AACTCTCAC
droEug1	scf7180000409881:243948-244075 +	465	TACACCATGAA----CAACAT--AAGCTATA---------T-C-----------------------TCCGGTCT--ACAAGTTGCAGATTTATTA--------------C------------------------TGATTTCT--------A--------T------------------ATAGA--A--A---CGAA-----------------TAATAATTGCGAAAA----------TCACTTGTAG-GCCGGAAAAA-----------------------------CCAC----------TCAC-AACTCTCAC
droBia1	scf7180000302402:4298359-4298484 +	251	TACACCATGAA----CAACAT--ATG-TATA---------T-T-------------------------CGGCCT--ACAGGCTGGAGCTCAATAGTGATTCGAG--------------------------------------ATTTGA-----------T---------------------TT--A--GTAGAGAA-----------------TCACTACTGGGTT--------------TCCTGTAG-GCCGGAGGAA-----------------------------CACC----------TCAC-AACTCTCAC
droTak1	scf7180000415310:621230-621363 -	131	TACACCATGAA----CAACAT--AAGATATG---------T-T-------------------------CGGCCT--ACAAGTTGAAGGTCAACAGTGATTTGAG-A------------------------------------ATAAATGTTTG-----AA---------------------AT--G--GTAGAAAA-----------------TCACTGTTGGGTT--------------TCCTGTAG-GCCGGAAAAA-----------------------------CACC----------TCAC-AACTCTCAC
droEle1	scf7180000491194:574957-575084 +	690	TACACCATGAA----CAACAT--AAGATATA---------T-T-------------------------CGGCCT--ACAAGAAGAGGCTCAATTGTGATTTAAAGG------------------------------------AAATGT-----------G---------------------GA--A--ATGGAAAG-----------------TCACAATTGGGTC--------------TCCTGT-G-GCCGGAAAAA-----------------------------CACC----------TCAC-AACTCTCAC
droRho1	scf7180000779488:616949-617082 +	160	TACACCATGAA----CAACAT--AAGATATA---------T-C-------------------------CGG-CT--ACAAGACGAGGCTCAATTGTGATTTGAA-A------------------------------------AGAA-TAGT-CAAA--TG---------------------GA-TA--ATGGTAAA-----------------TCACAATTGGGTC--------------TCCTGT-G-GCCGGAAAAA-----------------------------CACC----------TCAC-AACTCTCAC
droFic1	scf7180000454106:1794197-1794333 -	430	TACACCATGAA----CAACAT--AAGAAAAA---------T-C-------------------------TGATCT--ACAAACCGAAGCTAACTTGTGATTTAAAGGATAA---------------------------------TAAATAATT---T--TA---------------------AT-----ATGGAAAA-----------------TCACAATTTAGCT--------------TCCTGTAG-GTTGGAAAGA-----------------------------CACC----------CCAC-AACTCTCAC
droKik1	scf7180000302610:1723162-1723292 -	359	CAAG--------------------AGTTTTA---------T-T-------------------------TTATTT--ACAAGCTAAAATCTAATTTTAAGCTAAA-G------------------------------------ATTTTAGTTAT--T--TA---------------------AA--A--G-------------------------------------------------------------TTAAAAAAATATTTAAAAATAATTTGAAACTAAATAAAAACCGAATTTCAAGTCTA-AGTTTACAA
droAna3	scaffold_12929:3171299-3171434 +	53	AATACCAGACA----CAAAAT--ACACAAAA---------TACTAAAAATGGTATACCAACGTTATTTTTAGCTATCGATCATTATTTCTC----------------CACCAAATCCTCAGTATTTTGATTTGGT-T-----CTAT---------------------------------------------------------------------------------------------------TAT-TTTC---GAA-----------------------------AAAC----------ACAC-CATACACAC
droBip1	scf7180000396696:391796-391915 +	164	AACACAAA-------CAAAAT--GGA----A---------C-T-------------------------CAAGTC--AAAAATATAAATGAAACAGAGTATTAGA-A------------------------------------ATGGGCATTCG-----A----------------------GT-TGAACAAGAAAA---TCGAAAAATTGAAAAGACGATTAAA-------------------------------------------------------------------C----------TTTT-GAGTGAGGC
dp4	chr2:1714385-1714528 -	545	TAGACCATGAA----CAACAT--AAGAAAAACTTACACAC---------------------GTTTCTCTGGTTTATACAAAATCAAGTTTCATTGTGATTGGAG-C------------------------------------CTTA-T--ATT--T--TG---------------------GGATA--A--TCCAA-----------------TCACAATCAAGCT--------------TCCTGTACAACCCATGAGA--------------------------------------------GAC-AATTCACAC
droPer1	super_7:1868921-1869065 -	1214	TACACCATGAA----CAACAT--AAGAAAAACTTACACAC---------------------GTTTCTCTGGTTTATACAAAATGAAGTTTCATTGTGATTGGAG-C------------------------------------CTATATGTT----C--TG---------------------GGATA--A--TCCAA-----------------TCACAATCAAGCT--------------TCCTGTACAACCCATGAGA--------------------------------------------GAC-AATTCACAC
droWil1	scaffold_180955:2505632-2505764 +	1167	AAAAGAAAAAA----AAACAT--AATAATAT---------T-T-------------------------ATGTGT--ACACTGTGAGTTTTTATTATGTGTTTTG-T------------------------------------TTTTGCTTTTA--T--TT-------------------------A--T------T-----------------TATGCGTCTAGGCGCATTGCATTTC--TCC-------AAATCCAAA-----------------------------CAC-----------ACACACACACACAC
droVir3	scaffold_12928:1372331-1372464 -	7630	TACT--ATGAAGATACAACAT--ATA-TATA----TA---T-A--T----------------------ATATAG--ATATATAGAGATTTATGTGAAACCTATT-G------------------------------------TAGTGTATTCT--T--GA---------------------GC--T--GGTTAAAACAAAGTTTTAGCTGGCA-----------TT--------------TGGTATATGACCTATG----------------------------------------------------TAGTAGTT
droMoj3	scaffold_6496:17122051-17122183 +	3688	TATATTTTTA-----TAATAC--ATA-AAAA---------T-TCAT---------------------ATTACATATATTAATATTATTATTAATAT----TATT-ATTAT--------------------------------CTAATTTTT----T--TA---------------------AT-TTA-ATAAAATA-----------------TTACAAAT---TA--------------TAATTTATAATATATGTAA--------------------------------------------TAGATTTTTAAAT
droGri2	scaffold_15081:1647423-1647554 +	3061	AACAAAAAAAA----CAAGAAATAACAACTA---------T-T-------------------------CAGAAA--GGAGAAAACAAATTT---------TGTG-GTTGC------------------------TTAGTTCA--------A----TTTCAGTGCAAATGTTTTTATTT---AT--G--CTTG-------------------------------------------------GCAGTCA-GTCATACACA-----------------------------CAC-----------TCACACACTCACAC

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TACACCATGAACAACATAAGATT--------------TATTCGGTCT--ACAAACTGAAGCTTAATTGTGATTTATGGATGTGTATTTTTTAGCAGTTAAAAATCACAATTTAGCCACT-TTGTAG-GTCGATGA-------A--ACAGCT----------------CACAACTCTCAC

Size

Hit Count

Total Norm

droSim1

TACACCATGAACAACATAAGATA--------------TATTCGGTCT--ACAAACTGAAGCTTAATTGTGATTTAAGGATGTGTATTTTTTAGCACTAAAAAATCACAATTTAGCCAAT-TTGTAG-GTCGAT-A-------A--AAACCA----------------CACAACTCTCAC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................ATA--------------TATTCGGTCT--ACAAAC............................................................................................................................	19	1	41.00	0.00	28.00	13.00	0.00
...................GATA--------------TATTCGGTCT--ACAAAC............................................................................................................................	20	1	4.00	0.00	3.00	1.00	0.00
.......................................................TGAAGCTTAATTGTGATTTAAGGAT...................................................................................................	25	1	3.00	0.00	1.00	1.00	1.00
..............................................................................................................TTAGCCAAT-TTGTAG-GTC.................................................	18	1	2.00	0.00	0.00	1.00	1.00
.....................TA--------------TATTCGGTCT--ACAAAC............................................................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
.........................................................................TAACGATGTGTTTTTTTT........................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..............CATAAGATA--------------TATTCGGTCT--ACA...............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
....................ATA--------------TATTCGGTCT--ACAGAC............................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.......................................................TGAAGCTTAATTGTGATTTAAGGG....................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
.................AAGATA--------------TATTCGGTCT--ACAAAC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................................................................AAGGATGTGTATTTTTTAGCA....................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...............ATAAGATA--------------TATTCGGTCT--ACAAAC............................................................................................................................	24	1	1.00	0.00	1.00	0.00	0.00

droSec1

TACACCATGAACAACATAAGATA--------------TATTCGGTCT--ACAAACTGAAGCTTAATTGTGATTTAAGGATGTGTATTTTTTTGCACTAAAAAATCACAATTTAGCCAAT-TTGTAG-GTCGATGA-------A--AAACCA----------------CACAACTCTCAC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................................TTTAGGATTTGTATTTTT.........................................................................................	18	1	2.00	0.00	2.00	0.00
............................................................................................................ATTTAGCCAAT-TTGTAG-GTC.................................................	20	1	1.00	0.00	1.00	0.00
....................................................................................ATTTGTTCGCACTAAAAA.............................................................................	18	1	1.00	0.00	1.00	0.00
..........................................................................................................................GTGG-GTCGATGA-------A--GAACC.............................	18	1	1.00	0.00	0.00	1.00

droYak2

TACACCA---ACAACATAAGATA--------------TATTCGGCAT--ACAAACTTGAGCTTAATTGTGATTTAAGGATGTGAATT-TCAAGCAACGAAAAATCACAATGAAGCCAATTTTGTAG-GCCGATGG-------A--ACACCT----------------CACAACTCTCAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................TTGAGCTTAATTGTGATTTAAGG.....................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
.........................................................................TAAGGATGTGAGTT-TCAAGCAA...................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................TTGAGCTTAATTGTGATTTAAG......................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

CACACCATGAACAACATAAGATA--------------TATTCGGCCT--ACAAACATAAGCATAATTGTGATTTAAGGATGTATATT-TCAAGTAGTAATACATCACAATTTAGCCAAT-TTGTAG-GCCGATGA-------A--AAACCT----------------CACAACTCTCAC

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

droAna3

TACACCATGTCTGACTTGA--------------------------------------AAATTTAATTGTGATTTGGTTT------------------TTTGAATCACAATTAAGTTT---TTTTAA-GCCGGA-A-------AACACACAT----------------TTCAACTCTCAC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............CTTGA--------------------------------------AAATTTxATGGTG.............................................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................................................A-A-------AACACACAT----------------TTxAAATCTCAC	22	1	1.00	0.00	0.00	0.00	1.00

dp4

TAGACCATGAACAACATAAGAAAAACTTACACACGTTTCTCTGGTTTATACAAAATCAAGTTTCATTGTGATTGGAGCCT---TATATTTTGGGATAATCCAATCACAATCAAGCTTC--CTGTACAACCCATGA-------G--AG---------------------ACAATTCACAC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.AGACCATGAACAACATAAGA..............................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................AAGCTTC--CTGTACAACCCATGA-------G--A.................................	24	1	1.00	0.00	1.00	0.00	0.00

droPer1

TACACCATGAACAACATAAGAAAAACTTACACACGTTTCTCTGGTTTATACAAAATGAAGTTTCATTGTGATTGGAGCCTATAT--GTTCTGGGATAATCCAATCACAATCAAGCTTC--CTGTACAACCCATGA-------G--AG---------------------ACAATTCACAC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................................ATTCATTGTGACTGGAGCC....................................................................................................	19	1	6.00	0.00	0.00	0.00	0.00	6.00
............................................................................................................ATCAAGCTTC--CTGTACAACCCATGA-------G--A.................................	27	1	2.00	0.00	0.00	0.00	0.00	2.00
......ATGAACAACGTAAAAAAAA..........................................................................................................................................................	19	1	2.00	0.00	0.00	0.00	0.00	2.00

droWil1

caaagac---------------a---------------------------------------------------------------------------------------------------------------------------c-act----------------cacaatccacac

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

droVir3

TAC--CAACAACAA------ATA--------------Caaaaaaaaa--aaa-------------------------------------------aaaaaacaaa------------------------acaaaa-------a--aaaCAATACAATATGTAacactcgc-ataaacac	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
......................................AAAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------AAAAAA-------A--AAACAA............................	35	8	2.25	0.00	2.13	0.13	0.00	0.00
......................A--------------AAAAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------ACAAAA-------A--AAACA.............................	36	6	2.83	0.00	2.50	0.33	0.00	0.00
........................................AAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------A.................................................	21	47	0.28	0.00	0.00	0.00	0.21	0.06
......................................AAAAAAAAA--AAA-------------------------------------------AAAAAAAAA...........................................................................	21	47	0.28	0.00	0.00	0.00	0.21	0.06
.......................................AAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------..................................................	21	47	0.28	0.00	0.00	0.00	0.21	0.06
......................................AAAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------A.................................................	23	36	0.33	0.00	0.00	0.00	0.08	0.25
......................................AAAAAAAAA--AAA-------------------------------------------AAAAAACAAA------------------------ACAAAA-------A--AAAAAAA...........................	36	1	9.00	0.00	1.00	8.00	0.00	0.00
......................................AAAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------ACAAAA-------A--AAACAAA...........................	36	3	3.00	0.00	2.33	0.67	0.00	0.00
.....................................AAAAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------ACAAAA-------A--AAACAA............................	36	5	1.60	0.00	1.00	0.60	0.00	0.00
....................AAA--------------AAAAAAAAAA--AAA-------------------------------------------AAAAAACAAA------------------------ACAAAA-------A--AAA...............................	36	2	4.00	0.00	2.50	1.50	0.00	0.00
......................................AAAAAAAAA--AAA-------------------------------------------AAAAAACAAA------------------------AAAAAA-------A--AAACAAA...........................	36	3	2.33	0.00	1.33	1.00	0.00	0.00
.......................................AAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------A.................................................	22	41	0.15	0.00	0.00	0.00	0.02	0.12
......................................AAAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------..................................................	22	41	0.15	0.00	0.00	0.00	0.02	0.12
.......................................AAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------ACAAAA-------A--AAACAAAA..........................	36	3	2.00	0.00	1.33	0.67	0.00	0.00
......................A--------------AAAAAAAAAA--AAA-------------------------------------------AAAAAACAAA------------------------AAAAAA-------A--AAACA.............................	36	4	1.25	0.00	1.25	0.00	0.00	0.00
.............A------AAA--------------AAAAAAAAAA--AAA-------------------------------------------AAAAAACAAA------------------------ACAAAA-------A--AA................................	36	2	2.50	0.00	2.00	0.50	0.00	0.00
......................................AAAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------ACAAAA-------A--AAAAAA............................	35	6	0.83	0.00	0.67	0.17	0.00	0.00
.......................................AAAAAAAA--AAA-------------------------------------------AAAAAACAAA------------------------AAAAAA-------A--AAACAAAA..........................	36	3	1.67	0.00	1.00	0.67	0.00	0.00
......................A--------------CAAAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------AAAAAA-------A--AAACA.............................	36	5	0.60	0.00	0.00	0.60	0.00	0.00
.......................................AAAAAAAA--AAA-------------------------------------------AAAAAAAAAA------------------------AAAAAA-------A--AAACAATA..........................	36	3	1.00	0.00	0.67	0.33	0.00	0.00
............AA------AAA--------------AAAAAAAAAA--AAA-------------------------------------------AAAAAACAAA------------------------ACAAAA-------A--A.................................	36	4	0.75	0.00	0.25	0.50	0.00	0.00

droMoj3

TAC--------CAAAACAAAATA--------------CACTCAAACA--ACA-------------------------------------------ACAAAAAAACACAA------------------------GAATTATTCA--AAACAA-------------------TATAAacac

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2

TACAAAAAAACCAACTA-----------------------------------------------------------------------------------------------------------------------------A--AAACAC----------------AAATACACATAC

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image									None	None		None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image