dme-mir-989- Best orthologs

dme-mir-989	chr2R:10032856-10033029 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 10032871-10032891
   star strand at position 10032991-10033013
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2R:10032841-10033044 -		1	ATTT--------------------------T---AT--TTAAGTAC-------AAAGATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCA----------------TGCCGAGATTAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAG-CAACACGAA---G-TGA----
droSim1	chr2R:8799008-8799211 -	LASTZ	1	ATTT--------------------------T---AT--TTAAGTAC-------ATAAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCA----------------TGCCGAGATAAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGCAAG-CAACACGAA---G-TGA----
droSec1	super_1:7540579-7540782 -	LASTZ	1	ATTT--------------------------T---AT--TTAAGTAC-------AGAAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCT----------------TGCCGAGATTAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGCAAG-CAGCACGAA---G-TGA----
droYak2	chr2R:9968911-9969114 -	LASTZ	1	TTTT-------------------------TT---AT--TTAATTAC-------AAAGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATCCGGA-T---TTGGTGGTGGAC-CCA--TTCT-CA----------------TTCCGAGATTAGTTT-TATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACATGGA---G-TAA----
droEre2	scaffold_4845:15804995-15805201 +	LASTZ	1	ATTT--------------------------T---AT--TTAATTAC-------AAAGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACCCAGGTGACACTGATCCGGA-T---TTGGTAGTCGTACAAA--TCCTCCA----------------TTCCGAGTTAAGTTT-CATTCT--------GCGTCTTTTGA--ATTCGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACATGTA---G-GCATA--
droEug1	scf7180000409462:2807286-2807474 +	LASTZ	4	AT------------------------------------------------------GATTCTGGGAACTGGCCACTACCTTGCAGTCACGTGATAAA---AAAACGCAGGTAACTCTGATCCGGA-T---TTGGTAGTTGCCTAAA--GCCTCCA----------------TCCTAAGTTCAGTTTGCTTTTT--------GCGCTTTTT-A--ATTTGATTAGTTCATGTGATGTGACGTAGTGGAACATACCCAGAATTGCAGA-CAACAAAAA---G-TGG----
droBia1	scf7180000301592:178311-178438 -	LASTZ	4	ATTT--------------------------T-----------------------AAGATTCTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAAACACAGGTGACACAGATCTGGG-T---TTGGCAGTCAAC-TAT--GCCTCCA----------------CTCCGATTTAAGTTT-CGCTTG--------GTGTTTTTTAA----------------------------------------------------------------------------
droTak1	scf7180000414188:5828-6024 -	LASTZ	4	ATTGAATAAAATTAATTTTAGAGTTACCTTT---AT--TTAATTTC--------GAAATTCTGGGAATAGGCCACTACCTTGCAGTCACGTGATGAA---AAAACACTGGTGA-----ATCCGGAAT---TTGGTT----------------------------------------------GTTT-TGCTTC--------GTGTTTTTT-A--ATTTGATTAATTCATGTGATGTGACGTAGTGGAACATACCTGGAGTTGCAAA-CAACATAAA---G-TGA----
droEle1	scf7180000486831:22070-22270 -	LASTZ	4	ATAT--------------------------TTAAAT--TTTATTAC--------AAGGATCCGGGAATCGGCCACTACCTTGCATTCACGTGATGAA---AAAACGCAG---ACACTATCCCGGA-T---TTAATGGGTTAT-TTA--TCTCACA----------------TTCTGAGTTCAGTGT-CGTTTT--------GTGTTTTT--A--ATTATAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGATTTGCAAA-CAACATAAG---G-TAA----
droRho1	scf7180000777200:348081-348287 -	LASTZ	4	ACCT-------------------------AT---AT--TTTAT-AT-------CACGATTCTGGAAATCGGCCACTACCTTGCATTCACGTGATGGA---AAAACGCAGGTGTCACTGATCCGGA-T---TTAATGGGTGAT-TTA--TCCTACA----------------TACCGAATTCAGTGT-CGTTTT--------GTGTTTTTT-A--ACTTGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGAATCGCAGT-CAACATAAA---G-TGATAAC
droFic1	scf7180000453948:394481-394662 +	LASTZ	4	ATTT--------------------------C---AT--TTA-------------CAAATTCCGGGAATTGGCCACTACCTTGCAGTCACGTGATTCA---AAACCGCAATCGGCACTAATCCGGT-T---GT---------CTAAA-------------------------TCCGGAGCTCAGTGT-CCTTTT--------GTGGTTTTA-G--GTTCAAATAGTTCATGTGATGTGACGTAGTGGAACATGCCTGGAACAACAAA-CAACACGCA---G-TGA----
droKik1	scf7180000302385:160862-161070 -	LASTZ	4	AAAT--------------------------T---TTTCTTAACAAC-------AAACGTTTCGGGAGTTGGCCACTACCTCGCAGTCACGTGATGCAT--AAAATGCTAATGCCTCTGATCTGGT-T---TTGATATCCATTTATAGAT-ATCCA---T------------TTCCACCTACAGTTG-GCTGAT--------GTGTTT---GACTTTTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGGTGGCCAA-CACCAAAAA---G-TGA----
droAna3	scaffold_13266:5886554-5886734 +	LASTZ	1	AC---------------------------------------------------CAACGTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATCCGGA-G---ATGGTCCTCCAT-----------------------------CCTTGGGATTAGTGT-TAATTT--------GTGTTTTTTTT--ATTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCCTAA-CAACAAAAA---G-TGA----
droBip1	scf7180000395839:44591-44789 +	LASTZ	4	ATTT------------------------------------AAAAAC-------CAACGTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATCCGGA-A---GTGGACATTAAA-TAG--TCCTT-AAC--------------CTAAAAGATTAGTGT-TATTTT--------GTGTTTTCTGA---CTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCTTAA-CAACAAAAA---G-TGA----
dp4	chr3:2729279-2729420 -	LASTZ	1	A-------------------------------------------------------CGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAAT-------------------------------------------------------------------GATCTACGT-TAAATT--------GTGTTTCTT-----TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACAGAAA---TGTAC----
droPer1	super_2:2918784-2918948 -	LASTZ	1	TTGT--------------------------A---AA--CCAAGAAGAACCAAACAACGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAAT-------------------------------------------------------------------GATCTACGT-TAAATT--------GTGTTTCTT-----TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACAGAAA---TGTAC----
droWil1	scaffold_180745:1541090-1541255 +	LASTZ	1	TACG--------------------------A---GT--TCGAGTAC----AATAAATGTTTTGGGAATTGGCCACTACCTCGCAGTCACGTGATGAGA--GAGATGCAAGAGG-----------A-C---TT-------------------------------------------------TGTATGCCATTT--------GCATTTAAT-----ATTTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGCTTTAAAGTCATCAAGAA---G-GAA----
droVir3	scaffold_12875:1889282-1889470 +	LASTZ	1	AA---------------------------------------------------AAACGATTCGGGAATTGGCCACTACCTCGCAGTCACGTGATCCA---CAAACGCAGCCGGCTCTGGT---------------GCTTGGG-AAA--AAT-ACA--ATTTTCTTTTGTTTTCCTGGGCGCCGCAA-CGTTTT--------GCGTTC-------A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTGCAG-CCACAGCGCGAAG-TG-----
droMoj3	scaffold_6496:23382296-23382464 -	LASTZ	1	AA---------------------------------------------------AAACGATTCGGGAATTGGCCACTACCTCGCACTCACGTGATGCACTCAAAACGCCGACGA---------GGA-C---GT---------CCAAA--TT--CCA---TTTTC-----------------TCGTTT-TCCTCTGTCGTTTTGCGT----TGA----TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCC-----CCAGCAA---T-CCG----
droGri2	scaffold_15112:3992495-3992691 +	LASTZ	1	ATGT--------------------------A---AT-------GAA------AAAGCGTTCCGGGAATTGGCCACTACCTCGCAGTCACGTGATGCC---ACAAGGCGGGC-ACGCCGTGCAACA-TCCTCTCTTCGTTTAC-ACA--TCTCCTC----------------TTGAGAGGATTGCGT-CGTTCC--------GCCT----TGA--A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTCCCA-CAACAAGAA---C-AAC----

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	ATTT--------------------------T---AT--TTAAGTAC-------AAAGATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCA----------------TGCCGAGATTAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAG-CAACACGAA---G-TGA----
droSim1	ATTT--------------------------T---AT--TTAAGTAC-------ATAAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCA----------------TGCCGAGATAAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGCAAG-CAACACGAA---G-TGA----
droSec1	ATTT--------------------------T---AT--TTAAGTAC-------AGAAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCT----------------TGCCGAGATTAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGCAAG-CAGCACGAA---G-TGA----
droYak2	TTTT-------------------------TT---AT--TTAATTAC-------AAAGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATCCGGA-T---TTGGTGGTGGAC-CCA--TTCT-CA----------------TTCCGAGATTAGTTT-TATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACATGGA---G-TAA----
droEre2	ATTT--------------------------T---AT--TTAATTAC-------AAAGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACCCAGGTGACACTGATCCGGA-T---TTGGTAGTCGTACAAA--TCCTCCA----------------TTCCGAGTTAAGTTT-CATTCT--------GCGTCTTTTGA--ATTCGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACATGTA---G-GCATA--
droEug1	AT------------------------------------------------------GATTCTGGGAACTGGCCACTACCTTGCAGTCACGTGATAAA---AAAACGCAGGTAACTCTGATCCGGA-T---TTGGTAGTTGCCTAAA--GCCTCCA----------------TCCTAAGTTCAGTTTGCTTTTT--------GCGCTTTTT-A--ATTTGATTAGTTCATGTGATGTGACGTAGTGGAACATACCCAGAATTGCAGA-CAACAAAAA---G-TGG----
droBia1	ATTT--------------------------T-----------------------AAGATTCTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAAACACAGGTGACACAGATCTGGG-T---TTGGCAGTCAAC-TAT--GCCTCCA----------------CTCCGATTTAAGTTT-CGCTTG--------GTGTTTTTTAA----------------------------------------------------------------------------
droTak1	ATTGAATAAAATTAATTTTAGAGTTACCTTT---AT--TTAATTTC--------GAAATTCTGGGAATAGGCCACTACCTTGCAGTCACGTGATGAA---AAAACACTGGTGA-----ATCCGGAAT---TTGGTT----------------------------------------------GTTT-TGCTTC--------GTGTTTTTT-A--ATTTGATTAATTCATGTGATGTGACGTAGTGGAACATACCTGGAGTTGCAAA-CAACATAAA---G-TGA----
droEle1	ATAT--------------------------TTAAAT--TTTATTAC--------AAGGATCCGGGAATCGGCCACTACCTTGCATTCACGTGATGAA---AAAACGCAG---ACACTATCCCGGA-T---TTAATGGGTTAT-TTA--TCTCACA----------------TTCTGAGTTCAGTGT-CGTTTT--------GTGTTTTT--A--ATTATAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGATTTGCAAA-CAACATAAG---G-TAA----
droRho1	ACCT-------------------------AT---AT--TTTAT-AT-------CACGATTCTGGAAATCGGCCACTACCTTGCATTCACGTGATGGA---AAAACGCAGGTGTCACTGATCCGGA-T---TTAATGGGTGAT-TTA--TCCTACA----------------TACCGAATTCAGTGT-CGTTTT--------GTGTTTTTT-A--ACTTGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGAATCGCAGT-CAACATAAA---G-TGATAAC
droFic1	ATTT--------------------------C---AT--TTA-------------CAAATTCCGGGAATTGGCCACTACCTTGCAGTCACGTGATTCA---AAACCGCAATCGGCACTAATCCGGT-T---GT---------CTAAA-------------------------TCCGGAGCTCAGTGT-CCTTTT--------GTGGTTTTA-G--GTTCAAATAGTTCATGTGATGTGACGTAGTGGAACATGCCTGGAACAACAAA-CAACACGCA---G-TGA----
droKik1	AAAT--------------------------T---TTTCTTAACAAC-------AAACGTTTCGGGAGTTGGCCACTACCTCGCAGTCACGTGATGCAT--AAAATGCTAATGCCTCTGATCTGGT-T---TTGATATCCATTTATAGAT-ATCCA---T------------TTCCACCTACAGTTG-GCTGAT--------GTGTTT---GACTTTTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGGTGGCCAA-CACCAAAAA---G-TGA----
droAna3	AC---------------------------------------------------CAACGTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATCCGGA-G---ATGGTCCTCCAT-----------------------------CCTTGGGATTAGTGT-TAATTT--------GTGTTTTTTTT--ATTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCCTAA-CAACAAAAA---G-TGA----
droBip1	ATTT------------------------------------AAAAAC-------CAACGTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATCCGGA-A---GTGGACATTAAA-TAG--TCCTT-AAC--------------CTAAAAGATTAGTGT-TATTTT--------GTGTTTTCTGA---CTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCTTAA-CAACAAAAA---G-TGA----
dp4	A-------------------------------------------------------CGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAAT-------------------------------------------------------------------GATCTACGT-TAAATT--------GTGTTTCTT-----TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACAGAAA---TGTAC----
droPer1	TTGT--------------------------A---AA--CCAAGAAGAACCAAACAACGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAAT-------------------------------------------------------------------GATCTACGT-TAAATT--------GTGTTTCTT-----TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACAGAAA---TGTAC----
droWil1	TACG--------------------------A---GT--TCGAGTAC----AATAAATGTTTTGGGAATTGGCCACTACCTCGCAGTCACGTGATGAGA--GAGATGCAAGAGG-----------A-C---TT-------------------------------------------------TGTATGCCATTT--------GCATTTAAT-----ATTTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGCTTTAAAGTCATCAAGAA---G-GAA----
droVir3	AA---------------------------------------------------AAACGATTCGGGAATTGGCCACTACCTCGCAGTCACGTGATCCA---CAAACGCAGCCGGCTCTGGT---------------GCTTGGG-AAA--AAT-ACA--ATTTTCTTTTGTTTTCCTGGGCGCCGCAA-CGTTTT--------GCGTTC-------A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTGCAG-CCACAGCGCGAAG-TG-----
droMoj3	AA---------------------------------------------------AAACGATTCGGGAATTGGCCACTACCTCGCACTCACGTGATGCACTCAAAACGCCGACGA---------GGA-C---GT---------CCAAA--TT--CCA---TTTTC-----------------TCGTTT-TCCTCTGTCGTTTTGCGT----TGA----TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCC-----CCAGCAA---T-CCG----
droGri2	ATGT--------------------------A---AT-------GAA------AAAGCGTTCCGGGAATTGGCCACTACCTCGCAGTCACGTGATGCC---ACAAGGCGGGC-ACGCCGTGCAACA-TCCTCTCTTCGTTTAC-ACA--TCTCCTC----------------TTGAGAGGATTGCGT-CGTTCC--------GCCT----TGA--A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTCCCA-CAACAAGAA---C-AAC----

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

ATTT--------------------------T---AT--TTAAGTAC-------ATAAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCA----------------TGCCGAGATAAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGCAAG-CAACACGAA---G-TGA----	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	20.00	9.00	1.00	10.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	19.00	10.00	2.00	7.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	3.00	3.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA......................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................AACTGATxCGGA-T---TTGGTA........................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA........................................	21	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................................................................................................................................ATGTGACGTAGTGGAACA......................................	18	1	1.00	0.00	1.00	0.00	0.00
............................................................................................................................................................................................................................................GACGCTGTGGAACATACC..................................	18	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.......................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA......................................	22	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	1.00	0.00	0.00	1.00	0.00
.....................................................................GGCCACTACCTTGCAGTCACGTG....................................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.......................................	21	1	1.00	1.00	0.00	0.00	0.00

droSec1

ATTT--------------------------T---AT--TTAAGTAC-------AGAAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCT----------------TGCCGAGATTAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGCAAG-CAGCACGAA---G-TGA----	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	8785.00	3443.00	21.00	5321.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	8754.00	3154.00	58.00	5542.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	4810.00	2180.00	7.00	2623.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.........................................	19	1	473.00	187.00	1.00	285.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	467.00	182.00	5.00	280.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	460.00	189.00	0.00	271.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA........................................	21	1	360.00	191.00	2.00	167.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT.....................................	23	1	247.00	82.00	2.00	163.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.......................................	22	1	231.00	118.00	1.00	112.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA......................................	22	1	105.00	31.00	1.00	73.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.......................................	22	1	75.00	37.00	0.00	38.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	73.00	29.00	3.00	41.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAACA......................................	22	1	56.00	14.00	0.00	42.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAA........................................	20	1	54.00	10.00	0.00	44.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.......................................	21	1	54.00	23.00	1.00	30.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.......................................	21	1	53.00	10.00	0.00	43.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.........................................	20	1	50.00	24.00	0.00	26.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGCACA......................................	22	1	41.00	36.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA....................................	24	1	37.00	16.00	0.00	21.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGCAC.......................................	21	1	32.00	31.00	0.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGACA......................................	22	1	31.00	18.00	1.00	12.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC.....................................	23	1	24.00	8.00	0.00	16.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGCA........................................	20	1	23.00	20.00	0.00	3.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA......................................	22	1	20.00	7.00	2.00	11.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGA.........................................	19	1	20.00	3.00	0.00	17.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.......................................	21	1	19.00	18.00	0.00	1.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAAC.......................................	21	1	19.00	8.00	0.00	11.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGTACA......................................	22	1	18.00	15.00	0.00	3.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAAC.......................................	20	1	17.00	5.00	0.00	12.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGTAC.......................................	21	1	16.00	16.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAT....................................	24	1	16.00	6.00	0.00	10.00
....................................................................................................................................................................................................................................CGTGATGTGACGTAGTGGAACA......................................	22	1	16.00	5.00	0.00	11.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAC........................................	20	1	16.00	7.00	0.00	9.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACG......................................	22	1	16.00	7.00	0.00	9.00
.................................................................................................................................................................................................................................TCATGTGATGTGACGTAGTGGAAC.......................................	24	1	16.00	10.00	0.00	6.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAT.......................................	22	1	15.00	6.00	0.00	9.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA......................................	22	1	15.00	8.00	0.00	7.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA......................................	21	1	14.00	3.00	1.00	10.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC......................................	22	1	14.00	6.00	0.00	8.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.......................................	21	1	13.00	6.00	0.00	7.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA......................................	22	1	13.00	4.00	1.00	8.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAAC.......................................	21	1	12.00	3.00	0.00	9.00
...................................................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAACA......................................	23	1	12.00	5.00	0.00	7.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAACA......................................	21	1	12.00	6.00	0.00	6.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.......................................	21	1	12.00	3.00	0.00	9.00
....................................................................................................................................................................................................................................TGTGATATGACGTAGTGGAACA......................................	22	1	11.00	0.00	0.00	11.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.......................................	21	1	11.00	4.00	0.00	7.00
....................................................................................................................................................................................................................................CGTGATGTGACGTAGTGGAAC.......................................	21	1	11.00	3.00	0.00	8.00
....................................................................................................................................................................................................................................TGTGATGTCACGTAGTGGAAC.......................................	21	1	11.00	5.00	1.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAA........................................	20	1	11.00	5.00	0.00	6.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAA.......................................	21	1	11.00	2.00	0.00	9.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAAC.......................................	21	1	11.00	4.00	0.00	7.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT........................................	20	1	11.00	4.00	0.00	7.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.......................................	21	1	11.00	10.00	0.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGA........................................	20	1	10.00	8.00	0.00	2.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA......................................	22	1	10.00	5.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGTA........................................	20	1	10.00	10.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTCGAAC.......................................	21	1	10.00	5.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.......................................	21	1	10.00	2.00	0.00	8.00
....................................................................................................................................................................................................................................TGTGAxxTGACGTAGTGGAACA......................................	20	1	10.00	1.00	0.00	9.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA........................................	20	1	10.00	4.00	0.00	6.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAG........................................	20	1	10.00	4.00	0.00	6.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAAC.......................................	21	1	10.00	1.00	0.00	9.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAACA......................................	22	1	10.00	5.00	1.00	4.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAACA......................................	22	1	10.00	1.00	0.00	9.00
....................................................................................................................................................................................................................................TGTGATGTCACGTAGTGGAACA......................................	22	1	10.00	6.00	0.00	4.00
....................................................................................................................................................................................................................................TGTGATGTGACTTAGTGGAAC.......................................	21	1	10.00	3.00	0.00	7.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAACA......................................	22	1	10.00	0.00	0.00	10.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAAA.....................................	23	1	10.00	4.00	0.00	6.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.......................................	21	1	10.00	1.00	0.00	9.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAACA......................................	20	1	9.00	1.00	0.00	8.00
....................................................................................................................................................................................................................................TGTGATGTGACATAGTGGAACA......................................	22	1	9.00	4.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATGTTACGTAGTGGAACA......................................	22	1	9.00	1.00	0.00	8.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.......................................	21	1	9.00	2.00	1.00	6.00
....................................................................................................................................................................................................................................TGTGATGTAACGTAGTGGAAC.......................................	21	1	9.00	0.00	0.00	9.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA......................................	22	1	9.00	1.00	0.00	8.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAACA......................................	22	1	8.00	4.00	0.00	4.00
....................................................................................................................................................................................................................................TGTGATATGACGTAGTGGAAC.......................................	21	1	8.00	2.00	0.00	6.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGCAAC.......................................	21	1	8.00	5.00	0.00	3.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAAC.......................................	20	1	8.00	3.00	1.00	4.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAA........................................	20	1	8.00	7.00	0.00	1.00
....................................................................................................................................................................................................................................TTTGATGTGACGTAGTGGAACA......................................	22	1	8.00	2.00	0.00	6.00
....................................................................................................................................................................................................................................TGTAATGTGACGTAGTGGAAC.......................................	21	1	8.00	4.00	0.00	4.00
....................................................................................................................................................................................................................................TGTGATTTGACGTAGTGGAACA......................................	22	1	8.00	1.00	0.00	7.00
....................................................................................................................................................................................................................................TGTGCTGTGACGTAGTGGAAC.......................................	21	1	8.00	3.00	0.00	5.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAAC.......................................	19	1	8.00	2.00	0.00	6.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAA........................................	20	1	8.00	4.00	0.00	4.00
....................................................................................................................................................................................................................................TGTGATGTAACGTAGTGGAACA......................................	22	1	8.00	0.00	0.00	8.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGACCA......................................	22	1	8.00	5.00	0.00	3.00
....................................................................................................................................................................................................................................TGTCATGTGACGTAGTGGAAC.......................................	21	1	7.00	3.00	1.00	3.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAACA......................................	22	1	7.00	1.00	0.00	6.00
....................................................................................................................................................................................................................................TGTGATGAGACGTAGTGGAAC.......................................	21	1	7.00	0.00	0.00	7.00
...................................................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAAC.......................................	22	1	7.00	2.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGCAACA......................................	22	1	7.00	4.00	0.00	3.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA......................................	22	1	7.00	2.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATATGACGTAGTGGAA........................................	20	1	7.00	2.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAA.........................................	19	1	7.00	2.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGACGTGACGTAGTGGAAC.......................................	21	1	7.00	2.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTCGAA........................................	20	1	7.00	2.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAACA......................................	22	1	6.00	1.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAAC.......................................	21	1	6.00	0.00	0.00	6.00

droYak2

TTTT-------------------------TT---AT--TTAATTAC-------AAAGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATCCGGA-T---TTGGTGGTGGAC-CCA--TTCT-CA----------------TTCCGAGATTAGTTT-TATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACATGGA---G-TAA----	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	8220.00	11.00	309.00	7155.00	743.00	2.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	8164.00	2.00	319.00	7123.00	718.00	2.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	5253.00	2.00	169.00	4672.00	410.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.........................................	19	1	762.00	0.00	24.00	679.00	59.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	428.00	1.00	10.00	384.00	33.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	410.00	0.00	18.00	358.00	34.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT.....................................	23	1	348.00	1.00	13.00	299.00	35.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	89.00	0.00	6.00	75.00	8.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.......................................	21	1	84.00	0.00	2.00	75.00	7.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA......................................	22	1	67.00	0.00	2.00	61.00	4.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA........................................	21	1	59.00	0.00	6.00	50.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC.....................................	23	1	49.00	0.00	1.00	42.00	6.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC......................................	22	1	34.00	0.00	2.00	15.00	17.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA......................................	22	1	30.00	0.00	0.00	26.00	4.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA......................................	22	1	27.00	0.00	2.00	23.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.......................................	21	1	27.00	0.00	2.00	19.00	6.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATT......................................	22	1	25.00	0.00	1.00	21.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT........................................	20	1	22.00	0.00	0.00	22.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA....................................	24	1	20.00	0.00	0.00	16.00	4.00	0.00
....................................................................................................................................................................................................................................TGGGATGTGACGTAGTGGAACA......................................	22	1	20.00	0.00	3.00	7.00	10.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAA........................................	20	1	19.00	0.00	0.00	18.00	1.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.......................................	22	1	19.00	0.00	1.00	15.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGGGGAACA......................................	22	1	19.00	0.00	0.00	18.00	1.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.......................................	22	1	19.00	1.00	1.00	16.00	1.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAA........................................	20	1	17.00	0.00	0.00	17.00	0.00	0.00
....................................................................................................................................................................................................................................TGGGATGTGACGTAGTGGAAC.......................................	21	1	17.00	0.00	4.00	3.00	10.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA......................................	22	1	16.00	0.00	1.00	14.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGGGGAA........................................	20	1	16.00	0.00	0.00	15.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAAC.......................................	21	1	16.00	0.00	5.00	4.00	7.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACATT....................................	24	1	15.00	1.00	2.00	10.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGACCA......................................	22	1	15.00	0.00	0.00	6.00	9.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGGGGAAC.......................................	21	1	14.00	0.00	0.00	12.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.......................................	21	1	14.00	0.00	1.00	7.00	6.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAT.......................................	22	1	13.00	0.00	1.00	10.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAAC.......................................	21	1	13.00	0.00	0.00	13.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.......................................	21	1	12.00	0.00	0.00	11.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAAC.......................................	21	1	12.00	0.00	1.00	7.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAT......................................	22	1	12.00	0.00	0.00	12.00	0.00	0.00
....................................................................................................................................................................................................................................TGGGATGTGACGTAGTGGAA........................................	20	1	11.00	0.00	0.00	1.00	10.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.......................................	21	1	11.00	0.00	1.00	7.00	3.00	0.00
....................................................................................................................................................................................................................................CGTGATGTGACGTAGTGGAAC.......................................	21	1	11.00	0.00	3.00	8.00	0.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAAC.......................................	21	1	11.00	0.00	0.00	11.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA......................................	22	1	11.00	0.00	0.00	9.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA......................................	22	1	11.00	0.00	0.00	8.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGACC.......................................	21	1	10.00	0.00	1.00	3.00	6.00	0.00
...................................................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAACA......................................	23	1	10.00	0.00	0.00	10.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGCAAC.......................................	21	1	10.00	0.00	0.00	6.00	4.00	0.00
....................................................................................................................................................................................................................................CGTGATGTGACGTAGTGGAACA......................................	22	1	10.00	0.00	0.00	8.00	2.00	0.00
....................................................................................................................................................................................................................................TGAGATGTGACGTAGTGGAACA......................................	22	1	10.00	0.00	2.00	4.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.......................................	21	1	10.00	0.00	1.00	5.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTCGTGGAA........................................	20	1	10.00	0.00	0.00	8.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGCACA......................................	22	1	10.00	0.00	3.00	3.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAACA......................................	22	1	9.00	0.00	2.00	3.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAACA......................................	22	1	9.00	0.00	2.00	2.00	4.00	1.00
...................................................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAAC.......................................	22	1	9.00	0.00	0.00	8.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATA......................................	22	1	9.00	0.00	1.00	8.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA........................................	20	1	9.00	0.00	0.00	8.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.......................................	21	1	9.00	0.00	0.00	6.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAA........................................	20	1	9.00	0.00	2.00	3.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGACA......................................	22	1	9.00	0.00	0.00	6.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAC........................................	20	1	9.00	0.00	2.00	4.00	3.00	0.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAACA......................................	20	1	8.00	0.00	0.00	8.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAC........................................	20	1	8.00	0.00	0.00	8.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.......................................	21	1	8.00	0.00	1.00	5.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAA........................................	20	1	8.00	0.00	1.00	5.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACG......................................	22	1	8.00	0.00	0.00	3.00	5.00	0.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAACA......................................	22	1	8.00	0.00	1.00	3.00	4.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.........................................	20	1	8.00	0.00	1.00	6.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTCGTGGAACA......................................	22	1	8.00	0.00	1.00	4.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGAGGAACA......................................	22	1	7.00	0.00	1.00	5.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGA........................................	20	1	7.00	0.00	0.00	3.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA......................................	22	1	7.00	0.00	0.00	4.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAAC.......................................	21	1	7.00	0.00	0.00	6.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGAGGAA........................................	20	1	7.00	0.00	0.00	7.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGG..........................................	18	1	7.00	0.00	0.00	7.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGACGTGACGTAGTGGAACA......................................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAAC.......................................	20	1	7.00	0.00	1.00	5.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGA.........................................	19	1	7.00	0.00	0.00	7.00	0.00	0.00
....................................................................................................................................................................................................................................TATGATGTGACGTAGTGGAAC.......................................	21	1	7.00	0.00	0.00	7.00	0.00	0.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAAC.......................................	20	1	7.00	0.00	0.00	7.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGCCGTAGTGGAACA......................................	22	1	7.00	0.00	1.00	2.00	4.00	0.00
....................................................................................................................................................................................................................................TTTGATGTGACGTAGTGGAACA......................................	22	1	7.00	0.00	1.00	5.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAA........................................	20	1	7.00	0.00	0.00	4.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.......................................	21	1	7.00	0.00	2.00	5.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAAC.......................................	21	1	7.00	0.00	2.00	5.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAG.....................................	23	1	7.00	0.00	0.00	6.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAA........................................	20	1	7.00	0.00	0.00	6.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.......................................	21	1	6.00	0.00	1.00	1.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTTACGTAGTGGAAC.......................................	21	1	6.00	0.00	1.00	4.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGCA........................................	20	1	6.00	0.00	2.00	0.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGAxxTGACGTAGTGGAAC.......................................	19	1	6.00	0.00	0.00	6.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACCTAGTGGAACA......................................	22	1	6.00	0.00	0.00	5.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAACA......................................	22	1	6.00	0.00	0.00	4.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTCGAAC.......................................	21	1	6.00	0.00	0.00	4.00	1.00	1.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA......................................	21	1	6.00	0.00	0.00	6.00	0.00	0.00
....................................................................................................................................................................................................................................TGTCATGTGACGTAGTGGAACA......................................	22	1	6.00	0.00	0.00	6.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTAGAAC.......................................	21	1	6.00	0.00	1.00	4.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAG........................................	20	1	6.00	0.00	0.00	5.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTACTGGAACA......................................	22	1	6.00	0.00	0.00	6.00	0.00	0.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAACA......................................	21	1	6.00	0.00	0.00	5.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATCTGACGTAGTGGAACA......................................	22	1	6.00	0.00	1.00	5.00	0.00	0.00

droEre2

ATTT--------------------------T---AT--TTAATTAC-------AAAGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACCCAGGTGACACTGATCCGGA-T---TTGGTAGTCGTACAAA--TCCTCCA----------------TTCCGAGTTAAGTTT-CATTCT--------GCGTCTTTTGA--ATTCGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACATGTA---G-GCATA--	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	479.00	13.00	15.00	0.00	451.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	350.00	7.00	10.00	0.00	333.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	207.00	0.00	9.00	0.00	198.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	27.00	0.00	0.00	0.00	27.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	12.00	2.00	1.00	0.00	9.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT.....................................	23	1	12.00	0.00	0.00	0.00	12.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.........................................	19	1	12.00	0.00	0.00	0.00	12.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.........................................	20	1	8.00	0.00	2.00	0.00	6.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAACA......................................	22	1	7.00	0.00	0.00	0.00	7.00
....................................................................................................................................................................................................................................TGTGATGTTACGTAGTGGAACA......................................	22	1	7.00	0.00	0.00	0.00	7.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.......................................	22	1	7.00	0.00	0.00	0.00	7.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	7.00	0.00	0.00	0.00	7.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA........................................	21	1	6.00	0.00	0.00	0.00	6.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAAC.......................................	21	1	5.00	1.00	0.00	0.00	4.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA......................................	22	1	5.00	0.00	0.00	0.00	5.00
....................................................................................................................................................................................................................................TGTGATGTTACGTAGTGGAA........................................	20	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................................................................................................................................TGTAATGTGACGTAGTGGAACA......................................	22	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.......................................	21	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................................................................................................................................TGTTATGTGACGTAGTGGAACA......................................	22	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.......................................	21	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................................................................................................................................TTTGATGTGACGTAGTGGAAC.......................................	21	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAACA......................................	22	1	3.00	0.00	1.00	0.00	2.00

droEug1

AT------------------------------------------------------GATTCTGGGAACTGGCCACTACCTTGCAGTCACGTGATAAA---AAAACGCAGGTAACTCTGATCCGGA-T---TTGGTAGTTGCCTAAA--GCCTCCA----------------TCCTAAGTTCAGTTTGCTTTTT--------GCGCTTTTT-A--ATTTGATTAGTTCATGTGATGTGACGTAGTGGAACATACCCAGAATTGCAGA-CAACAAAAA---G-TGG----

Size

Hit Count

Total Norm

droBia1

ATTT--------------------------T-----------------------AAGATTCTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAAACACAGGTGACACAGATCTGGG-T---TTGGCAGTCAAC-TAT--GCCTCCA----------------CTCCGATTTAAGTTT-CGCTTG--------GTGTTTTTTAA----------------------------------------------------------------------------

Size

Hit Count

Total Norm

droTak1

ATTGAATAAAATTAATTTTAGAGTTACCTTT---AT--TTAATTTC--------GAAATTCTGGGAATAGGCCACTACCTTGCAGTCACGTGATGAA---AAAACACTGGTGA-----ATCCGGAAT---TTGGTT----------------------------------------------GTTT-TGCTTC--------GTGTTTTTT-A--ATTTGATTAATTCATGTGATGTGACGTAGTGGAACATACCTGGAGTTGCAAA-CAACATAAA---G-TGA----

Size

Hit Count

Total Norm

droEle1

ATAT--------------------------TTAAAT--TTTATTAC--------AAGGATCCGGGAATCGGCCACTACCTTGCATTCACGTGATGAA---AAAACGCAG---ACACTATCCCGGA-T---TTAATGGGTTAT-TTA--TCTCACA----------------TTCTGAGTTCAGTGT-CGTTTT--------GTGTTTTT--A--ATTATAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGATTTGCAAA-CAACATAAG---G-TAA----

Size

Hit Count

Total Norm

droRho1

ACCT-------------------------AT---AT--TTTAT-AT-------CACGATTCTGGAAATCGGCCACTACCTTGCATTCACGTGATGGA---AAAACGCAGGTGTCACTGATCCGGA-T---TTAATGGGTGAT-TTA--TCCTACA----------------TACCGAATTCAGTGT-CGTTTT--------GTGTTTTTT-A--ACTTGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGAATCGCAGT-CAACATAAA---G-TGATAAC

Size

Hit Count

Total Norm

droFic1

ATTT--------------------------C---AT--TTA-------------CAAATTCCGGGAATTGGCCACTACCTTGCAGTCACGTGATTCA---AAACCGCAATCGGCACTAATCCGGT-T---GT---------CTAAA-------------------------TCCGGAGCTCAGTGT-CCTTTT--------GTGGTTTTA-G--GTTCAAATAGTTCATGTGATGTGACGTAGTGGAACATGCCTGGAACAACAAA-CAACACGCA---G-TGA----

Size

Hit Count

Total Norm

droKik1

AAAT--------------------------T---TTTCTTAACAAC-------AAACGTTTCGGGAGTTGGCCACTACCTCGCAGTCACGTGATGCAT--AAAATGCTAATGCCTCTGATCTGGT-T---TTGATATCCATTTATAGAT-ATCCA---T------------TTCCACCTACAGTTG-GCTGAT--------GTGTTT---GACTTTTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGGTGGCCAA-CACCAAAAA---G-TGA----

Size

Hit Count

Total Norm

droAna3

AC---------------------------------------------------CAACGTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATCCGGA-G---ATGGTCCTCCAT-----------------------------CCTTGGGATTAGTGT-TAATTT--------GTGTTTTTTTT--ATTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCCTAA-CAACAAAAA---G-TGA----	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	509.00	436.00	66.00	7.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	500.00	428.00	67.00	3.00	2.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	456.00	365.00	85.00	4.00	2.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.........................................	19	1	94.00	67.00	24.00	2.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	32.00	24.00	8.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	26.00	22.00	4.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC.....................................	23	1	22.00	19.00	2.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	10.00	9.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT.....................................	23	1	9.00	7.00	2.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.......................................	21	1	7.00	4.00	3.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACATAGTGGAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.......................................	22	1	6.00	4.00	2.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA........................................	21	1	5.00	4.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAA........................................	20	1	4.00	3.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAA........................................	20	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTTACGTAGTGGAA........................................	20	1	4.00	1.00	3.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.......................................	21	1	3.00	3.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.......................................	21	1	3.00	0.00	3.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA....................................	24	1	3.00	2.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACATAGTGGAA........................................	20	1	3.00	3.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGG..........................................	18	1	3.00	1.00	2.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAA........................................	20	1	3.00	1.00	2.00	0.00	0.00
....................................................................................................................................................................................................................................TGGGATGTGACGTAGTGGAA........................................	20	1	3.00	0.00	2.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGAAGTAGTGGAAC.......................................	21	1	3.00	3.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATA......................................	22	1	3.00	3.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAA........................................	20	1	3.00	3.00	0.00	0.00	0.00

droBip1

ATTT------------------------------------AAAAAC-------CAACGTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATCCGGA-A---GTGGACATTAAA-TAG--TCCTT-AAC--------------CTAAAAGATTAGTGT-TATTTT--------GTGTTTTCTGA---CTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCTTAA-CAACAAAAA---G-TGA----

Size

Hit Count

Total Norm

dp4

A-------------------------------------------------------CGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAAT-------------------------------------------------------------------GATCTACGT-TAAATT--------GTGTTTCTT-----TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACAGAAA---TGTAC----	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	8932.00	8680.00	68.00	177.00	7.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	8657.00	8462.00	29.00	158.00	8.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	5262.00	5192.00	9.00	61.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.........................................	19	1	647.00	638.00	0.00	9.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	218.00	217.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	178.00	173.00	1.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT.....................................	23	1	167.00	166.00	0.00	1.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA........................................	21	1	135.00	131.00	3.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	129.00	124.00	2.00	2.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.......................................	21	1	72.00	72.00	0.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.......................................	22	1	58.00	55.00	2.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC......................................	22	1	48.00	45.00	0.00	1.00	2.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA......................................	22	1	32.00	31.00	1.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.........................................	20	1	25.00	25.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT........................................	20	1	24.00	24.00	0.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.......................................	22	1	19.00	19.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAAC.......................................	21	1	18.00	16.00	1.00	1.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA......................................	22	1	16.00	14.00	1.00	1.00	0.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAACA......................................	21	1	16.00	15.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.......................................	21	1	15.00	15.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA......................................	22	1	14.00	14.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.......................................	21	1	14.00	14.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAACA......................................	22	1	14.00	12.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA......................................	22	1	13.00	12.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAA........................................	20	1	12.00	12.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.......................................	21	1	12.00	9.00	0.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC.....................................	23	1	12.00	11.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA......................................	22	1	11.00	11.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTCGAAC.......................................	21	1	11.00	9.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAAC.......................................	21	1	11.00	11.00	0.00	0.00	0.00
...................................................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAAC.......................................	22	1	11.00	11.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA......................................	22	1	10.00	8.00	1.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.......................................	21	1	10.00	10.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA....................................	24	1	10.00	10.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.......................................	21	1	10.00	10.00	0.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAACA......................................	23	1	9.00	9.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAA........................................	20	1	9.00	8.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAA........................................	20	1	9.00	9.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGACC.......................................	21	1	9.00	9.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTAGAACA......................................	22	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.......................................	21	1	8.00	7.00	0.00	1.00	0.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAAC.......................................	20	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.......................................	21	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGCACA......................................	22	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAAC.......................................	21	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................CGTGATGTGACGTAGTGGAA........................................	20	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA........................................	20	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAACA......................................	22	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAC........................................	20	1	8.00	7.00	0.00	0.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACTTT....................................	24	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAG........................................	20	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGT.........................................	19	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TTTGATGTGACGTAGTGGAACA......................................	22	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACTT.....................................	23	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACATT....................................	24	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.......................................	21	1	7.00	6.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTAATGTGACGTAGTGGAA........................................	20	1	7.00	7.00	0.00	0.00	0.00
...................................................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAACA......................................	23	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATATGACGTAGTGGAAC.......................................	21	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA......................................	22	1	7.00	7.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAAC.......................................	20	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTCGTGGAAC.......................................	21	1	7.00	6.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................CGTGATGTGACGTAGTGGAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAA.........................................	19	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACTTAGTGGAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGACGTGACGTAGTGGAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGCAACA......................................	22	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGACA......................................	22	1	6.00	5.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGAxxTGACGTAGTGGAACA......................................	20	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGCAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGA........................................	20	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACTTAGTGGAACA......................................	22	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAA........................................	20	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TATGATGTGACGTAGTGGAACA......................................	22	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACATAGTGGAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATxTGACGTAGTGGAAC.......................................	20	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAATGGAAC.......................................	21	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATTTGACGTAGTGGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATATGACGTAGTGGAA........................................	20	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACTTTT...................................	25	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TTTGATGTGACGTAGTGGAAC.......................................	21	1	5.00	4.00	0.00	0.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTAGAAC.......................................	21	1	5.00	3.00	0.00	2.00	0.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAAC.......................................	19	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGACGTGACGTAGTGGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGGGATGTGACGTAGTGGAACA......................................	22	1	5.00	3.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTAACGTAGTGGAA........................................	20	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAA........................................	20	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATCTGACGTAGTGGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTCGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAT....................................	24	1	4.00	4.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA......................................	21	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAC........................................	20	1	4.00	4.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAA........................................	19	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACCTAGTGGAA........................................	20	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAA........................................	21	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAACA......................................	22	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGAAGTAGTGGAACA......................................	22	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGCA........................................	20	1	4.00	3.00	1.00	0.00	0.00

droPer1

TTGT--------------------------A---AA--CCAAGAAGAACCAAACAACGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAAT-------------------------------------------------------------------GATCTACGT-TAAATT--------GTGTTTCTT-----TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACAGAAA---TGTAC----	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	3492.00	3461.00	2.00	19.00	10.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	2906.00	2863.00	6.00	29.00	8.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	1577.00	1568.00	2.00	4.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.........................................	19	1	117.00	115.00	0.00	1.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	46.00	46.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	44.00	43.00	0.00	1.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA........................................	21	1	42.00	40.00	0.00	0.00	2.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.......................................	22	1	40.00	37.00	0.00	2.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	28.00	28.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT.....................................	23	1	18.00	17.00	0.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA......................................	22	1	11.00	11.00	0.00	0.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.......................................	22	1	10.00	10.00	0.00	0.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.........................................	20	1	8.00	7.00	0.00	1.00	0.00	0.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAACA......................................	20	1	8.00	8.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC......................................	22	1	7.00	7.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.......................................	21	1	7.00	7.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.......................................	21	1	7.00	7.00	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAA........................................	19	1	7.00	7.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA......................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.......................................	21	1	6.00	6.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGAGGAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA......................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA....................................	24	1	5.00	5.00	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAAC.......................................	20	1	5.00	5.00	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAACA......................................	21	1	5.00	5.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAAC.......................................	21	1	5.00	4.00	1.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC.....................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTAGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA......................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTAATGTGACGTAGTGGAACA......................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.......................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAA........................................	19	1	4.00	4.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATA......................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA........................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA......................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA......................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.......................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATATGACGTAGTGGAAC.......................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAACA......................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TATGATGTGACGTAGTGGAA........................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA......................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAA........................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTAATGTGACGTAGTGGAAC.......................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.......................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT........................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATxTGACGTAGTGGAACA......................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA......................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00

droWil1

TACG--------------------------A---GT--TCGAGTAC----AATAAATGTTTTGGGAATTGGCCACTACCTCGCAGTCACGTGATGAGA--GAGATGCAAGAGG-----------A-C---TT-------------------------------------------------TGTATGCCATTT--------GCATTTAAT-----ATTTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGCTTTAAAGTCATCAAGAA---G-GAA----	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	7376.00	5492.00	38.00	1797.00	49.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	4812.00	3808.00	19.00	961.00	24.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	2756.00	2473.00	16.00	262.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.........................................	19	1	311.00	289.00	1.00	21.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	136.00	100.00	1.00	35.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT.....................................	23	1	115.00	95.00	1.00	17.00	2.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.......................................	22	1	111.00	59.00	0.00	49.00	3.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	95.00	76.00	0.00	19.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA........................................	21	1	74.00	52.00	1.00	21.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	51.00	39.00	0.00	11.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC......................................	22	1	39.00	27.00	0.00	8.00	4.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.......................................	21	1	37.00	27.00	0.00	10.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA......................................	22	1	19.00	15.00	0.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA......................................	22	1	17.00	14.00	0.00	3.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAT.......................................	22	1	16.00	9.00	0.00	7.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.........................................	20	1	16.00	10.00	2.00	3.00	1.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.......................................	22	1	16.00	7.00	1.00	8.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA......................................	22	1	15.00	3.00	0.00	12.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.......................................	21	1	14.00	9.00	0.00	3.00	2.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAACA......................................	22	1	13.00	11.00	0.00	1.00	1.00
....................................................................................................................................................................................................................................TTTGATGTGACGTAGTGGAACA......................................	22	1	12.00	7.00	0.00	3.00	2.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAA........................................	20	1	12.00	11.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA......................................	22	1	12.00	6.00	0.00	6.00	0.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAACA......................................	20	1	11.00	3.00	0.00	5.00	3.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA......................................	21	1	10.00	7.00	0.00	1.00	2.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGACA......................................	22	1	9.00	4.00	0.00	5.00	0.00
....................................................................................................................................................................................................................................TGTGACGTGACGTAGTGGAACA......................................	22	1	9.00	7.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.......................................	21	1	9.00	8.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.......................................	21	1	8.00	5.00	0.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGCTGTGACGTAGTGGAACA......................................	22	1	8.00	3.00	0.00	5.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTCGAACA......................................	22	1	8.00	6.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAA........................................	20	1	8.00	7.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT........................................	20	1	8.00	7.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA......................................	22	1	8.00	7.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTxGAACA......................................	21	1	8.00	4.00	0.00	3.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACATAGTGGAACA......................................	22	1	8.00	4.00	0.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGGGGAACA......................................	22	1	8.00	5.00	0.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGAAGTAGTGGAACA......................................	22	1	8.00	1.00	0.00	7.00	0.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAAC.......................................	20	1	8.00	5.00	0.00	1.00	2.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAAC.......................................	21	1	8.00	7.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.......................................	21	1	7.00	5.00	0.00	2.00	0.00
...................................................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAACA......................................	23	1	7.00	6.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGAGGAACA......................................	22	1	7.00	5.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.......................................	21	1	7.00	3.00	0.00	3.00	1.00
....................................................................................................................................................................................................................................AGTGATGTGACGTAGTGGAAC.......................................	21	1	7.00	3.00	0.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATCTGACGTAGTGGAAC.......................................	21	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAA........................................	20	1	6.00	5.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAACA......................................	22	1	6.00	4.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACTTAGTGGAAC.......................................	21	1	6.00	5.00	0.00	1.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAACA......................................	23	1	6.00	4.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTAGAAC.......................................	21	1	6.00	4.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.......................................	21	1	6.00	5.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAG.......................................	21	1	6.00	5.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAACA......................................	22	1	6.00	5.00	0.00	1.00	0.00
...................................................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAAC.......................................	22	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGACCA......................................	22	1	6.00	3.00	0.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAA........................................	20	1	6.00	5.00	1.00	0.00	0.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAAC.......................................	20	1	6.00	5.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAAC.......................................	21	1	6.00	4.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAAC.......................................	21	1	5.00	3.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGGGGAAC.......................................	21	1	5.00	4.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACATAGTGGAAC.......................................	21	1	5.00	3.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TATGATGTGACGTAGTGGAACA......................................	22	1	5.00	2.00	0.00	2.00	1.00
....................................................................................................................................................................................................................................TGAGATGTGACGTAGTGGAACA......................................	22	1	5.00	0.00	0.00	5.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACCTAGTGGAACA......................................	22	1	5.00	3.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA........................................	20	1	5.00	4.00	0.00	1.00	0.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAAC.......................................	19	1	5.00	3.00	0.00	1.00	1.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAA........................................	19	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................CGTGATGTGACGTAGTGGAACA......................................	22	1	5.00	4.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATATGACGTAGTGGAAC.......................................	21	1	5.00	3.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAACA......................................	22	1	5.00	3.00	1.00	0.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAACA......................................	22	1	5.00	2.00	0.00	3.00	0.00
....................................................................................................................................................................................................................................CGTGATGTGACGTAGTGGAAC.......................................	21	1	5.00	4.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.......................................	21	1	5.00	3.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAA........................................	20	1	5.00	4.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTAATGTGACGTAGTGGAACA......................................	22	1	5.00	3.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.......................................	21	1	5.00	1.00	0.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTAACGTAGTGGAACA......................................	22	1	5.00	1.00	0.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTCACGTAGTGGAACA......................................	22	1	5.00	4.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATA......................................	22	1	5.00	4.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACTTAGTGGAACA......................................	22	1	5.00	2.00	0.00	2.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGCACA......................................	22	1	5.00	4.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATATGACGTAGTGGAACA......................................	22	1	5.00	2.00	0.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTTACGTAGTGGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGACC.......................................	21	1	4.00	3.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGAGATGTGACGTAGTGGAAC.......................................	21	1	4.00	2.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAC........................................	20	1	4.00	3.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGCAAC.......................................	21	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAAC.......................................	21	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACCC.....................................	23	1	4.00	0.00	0.00	4.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTCGTGGAAC.......................................	21	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAACA......................................	22	1	4.00	1.00	0.00	2.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA......................................	22	1	4.00	3.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAACA......................................	22	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTACTGGAACA......................................	22	1	4.00	3.00	0.00	0.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGCCGTAGTGGAACA......................................	22	1	4.00	3.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGACGTGACGTAGTGGAAC.......................................	21	1	4.00	3.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGAAGTGACGTAGTGGAACA......................................	22	1	4.00	1.00	0.00	3.00	0.00
....................................................................................................................................................................................................................................TGTCATGTGACGTAGTGGAAC.......................................	21	1	4.00	3.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGGGGAA........................................	20	1	4.00	4.00	0.00	0.00	0.00

droVir3

AA---------------------------------------------------AAACGATTCGGGAATTGGCCACTACCTCGCAGTCACGTGATCCA---CAAACGCAGCCGGCTCTGGT---------------GCTTGGG-AAA--AAT-ACA--ATTTTCTTTTGTTTTCCTGGGCGCCGCAA-CGTTTT--------GCGTTC-------A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTGCAG-CCACAGCGCGAAG-TG-----	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	496.00	324.00	130.00	15.00	25.00	2.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	473.00	301.00	117.00	20.00	31.00	4.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	377.00	308.00	67.00	1.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.........................................	19	1	71.00	60.00	7.00	1.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	23.00	15.00	5.00	2.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	20.00	18.00	2.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT.....................................	23	1	13.00	8.00	4.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT........................................	20	1	8.00	8.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.......................................	21	1	6.00	5.00	1.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC......................................	22	1	6.00	4.00	0.00	0.00	2.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA........................................	21	1	6.00	5.00	1.00	0.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.......................................	22	1	5.00	2.00	1.00	0.00	2.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAACA......................................	22	1	4.00	1.00	0.00	0.00	2.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAC........................................	20	1	4.00	4.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA......................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAA........................................	19	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.......................................	21	1	3.00	2.00	1.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGGGATGTGACGTAGTGGAAC.......................................	21	1	3.00	1.00	2.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAACA......................................	22	1	3.00	2.00	1.00	0.00	0.00	0.00

droMoj3

AA---------------------------------------------------AAACGATTCGGGAATTGGCCACTACCTCGCACTCACGTGATGCACTCAAAACGCCGACGA---------GGA-C---GT---------CCAAA--TT--CCA---TTTTC-----------------TCGTTT-TCCTCTGTCGTTTTGCGT----TGA----TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCC-----CCAGCAA---T-CCG----	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	6915.00	6786.00	72.00	52.00	5.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	6156.00	5995.00	82.00	69.00	10.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	4406.00	4270.00	67.00	69.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	1031.00	1017.00	11.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.........................................	19	1	517.00	488.00	20.00	9.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT.....................................	23	1	338.00	333.00	2.00	3.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	216.00	213.00	3.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA........................................	21	1	181.00	173.00	3.00	5.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.......................................	22	1	154.00	148.00	5.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	81.00	79.00	1.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA....................................	24	1	56.00	55.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.......................................	21	1	48.00	46.00	2.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAT....................................	24	1	46.00	45.00	0.00	1.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAT.......................................	22	1	35.00	35.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC.....................................	23	1	30.00	29.00	0.00	1.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.........................................	20	1	28.00	28.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAG.....................................	23	1	27.00	27.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT........................................	20	1	23.00	23.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACATT....................................	24	1	21.00	19.00	1.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.......................................	21	1	15.00	13.00	1.00	1.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.......................................	21	1	14.00	14.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAA........................................	20	1	14.00	14.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAG........................................	20	1	13.00	12.00	1.00	0.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.......................................	22	1	13.00	13.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAAC.......................................	21	1	13.00	13.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAAC.......................................	21	1	13.00	12.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA......................................	22	1	11.00	10.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATTTGACGTAGTGGAACA......................................	22	1	11.00	11.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAA........................................	20	1	10.00	10.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACTT.....................................	23	1	10.00	10.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.......................................	21	1	10.00	10.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGAAGTAGTGGAACA......................................	22	1	9.00	9.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA......................................	22	1	9.00	8.00	1.00	0.00	0.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAA........................................	19	1	9.00	9.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TTTGATGTGACGTAGTGGAACA......................................	22	1	9.00	9.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAA.........................................	19	1	9.00	9.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA......................................	22	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGAxxTGACGTAGTGGAACA......................................	20	1	8.00	8.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.......................................	21	1	8.00	7.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAAC.......................................	21	1	8.00	7.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAAC.......................................	21	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTxGAACA......................................	21	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................CGTGATGTGACGTAGTGGAACA......................................	22	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTTGAACA......................................	22	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TTTGATGTGACGTAGTGGAA........................................	20	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................CGTGATGTGACGTAGTGGAAC.......................................	21	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.......................................	21	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAC........................................	20	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAAC.......................................	21	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAACA......................................	22	1	7.00	6.00	1.00	0.00	0.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAAC.......................................	20	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA......................................	22	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TTTGATGTGACGTAGTGGAAC.......................................	21	1	7.00	7.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGA........................................	20	1	7.00	4.00	0.00	3.00	0.00
.....................................................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA......................................	21	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACTTAGTGGAA........................................	20	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGAxxTGACGTAGTGGAAC.......................................	19	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTCGAACA......................................	22	1	6.00	5.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGGGATGTGACGTAGTGGAACA......................................	22	1	6.00	4.00	1.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATA......................................	22	1	6.00	5.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGG..........................................	18	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTAGAAC.......................................	21	1	6.00	5.00	0.00	1.00	0.00
...................................................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAACA......................................	23	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTTACGTAGTGGAACA......................................	22	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAG.......................................	21	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAA........................................	20	1	5.00	4.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAC........................................	20	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC......................................	22	1	5.00	3.00	2.00	0.00	0.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAA........................................	18	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTCACGTAGTGGAAC.......................................	21	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTAATGTGACGTAGTGGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACAA.....................................	23	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.......................................	21	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACTTAGTGGAAC.......................................	21	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGAGATGTGACGTAGTGGAAC.......................................	21	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATTTGACGTAGTGGAAC.......................................	21	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAACA......................................	22	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.......................................	21	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACATAGTGGAAC.......................................	21	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA........................................	20	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.......................................	21	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGCGGAA........................................	20	1	5.00	4.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGTAACA......................................	22	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTTATGTGACGTAGTGGAACA......................................	22	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTAACGTAGTGGAAC.......................................	21	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAA........................................	20	1	4.00	3.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATATGACGTAGTGGAACA......................................	22	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTTACGTAGTGGAA........................................	20	1	4.00	4.00	0.00	0.00	0.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAACA......................................	20	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATT......................................	22	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTTACGTAGTGGAAC.......................................	21	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGACGTGACGTAGTGGAACA......................................	22	1	4.00	3.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................TGGGATGTGACGTAGTGGAA........................................	20	1	4.00	3.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTAATGTGACGTAGTGGAAC.......................................	21	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGGGATGTGACGTAGTGGAAC.......................................	21	1	4.00	2.00	2.00	0.00	0.00
.....................................................................................................................................................................................................................................GTGATGTGACGTAGTGGAACA......................................	21	1	4.00	3.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAA........................................	20	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTCGAAC.......................................	21	1	3.00	3.00	0.00	0.00	0.00

droGri2

ATGT--------------------------A---AT-------GAA------AAAGCGTTCCGGGAATTGGCCACTACCTCGCAGTCACGTGATGCC---ACAAGGCGGGC-ACGCCGTGCAACA-TCCTCTCTTCGTTTAC-ACA--TCTCCTC----------------TTGAGAGGATTGCGT-CGTTCC--------GCCT----TGA--A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTCCCA-CAACAAGAA---C-AAC----	Size	Hit Count	Total Norm	V109 Male body
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA........................................	20	1	60.00	60.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.......................................	21	1	32.00	32.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA......................................	22	1	31.00	31.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.........................................	19	1	9.00	9.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT.....................................	23	1	9.00	9.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.......................................	21	1	3.00	3.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT......................................	22	1	3.00	3.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA.....................................	23	1	2.00	2.00
....................................................................................................................................................................................................................................TGTGATGCGACGTAGTGGAA........................................	20	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGAAGTGACGTAGTGGAACA......................................	22	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATCTGACGTAGTGGAAC.......................................	21	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATCTGACGTAGTGGAACAT.....................................	23	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTACTGGAA........................................	20	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTATTGGAA........................................	20	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.......................................	21	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC......................................	22	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAA.........................................	19	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAT....................................	24	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAC........................................	20	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGATGTAGTGGAACA......................................	22	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT........................................	20	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTCACGTAGTGGAA........................................	20	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGCAAC.......................................	21	1	1.00	1.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAAC.......................................	19	1	1.00	1.00
......................................................................................................................................................................................................................................TGATGTGACGTAGTGGAA........................................	18	1	1.00	1.00
....................................................................................................................................................................................................................................TGTGATGTGACGTAGTGAAAC.......................................	21	1	1.00	1.00

Generated: 04/20/2012 at 05:08:05 EDT

dme-mir-989

chr2R:10032856-10033029 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup