dme-mir-989- 12- and 20-way alignments

dme-mir-989	chr2R:10032856-10033029 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 10032871-10032891
   star strand at position 10032991-10033013
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:10032841-10033044 -	ATTTTATTTAAGTACAAAG-ATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCATG-----------------------------CCGAGATTAGTTTCATTTTGCG----------TCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAG--CAA-CA---CGAA-GTGA
droSim1	chr2R:8799008-8799211 -	ATTTTATTTAAGTACATAA-ATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCATG-----------------------------CCGAGATAAGTTTCATTTTGCG----------TCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGCAAG--CAA-CA---CGAA-GTGA
droSec1	super_1:7540579-7540782 -	ATTTTATTTAAGTACAGAA-ATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCTTG-----------------------------CCGAGATTAGTTTCATTTTGCG----------TCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGCAAG--CAG-CA---CGAA-GTGA
droYak2	chr2R:9968911-9969113 -	TTTTTATTTAATTACAAAG-ATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATC---CGGATTTGGTGGTGG-ACCCATTCTC-ATT-----------------------------CCGAGATTAGTTTTATTTTGCG----------TCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG--CAA-CA---TGGA-GTAA
droEre2	scaffold_4845:15804995-15805199 +	ATTTTATTTAATTACAAAG-ATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACCCAGGTGACACTGATC---CGGATTTGGTAGTCGTACAAATCCTCCATT-----------------------------CCGAGTTAAGTTTCATTCTGCG----------TCTTTTGAATTCGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG--CAA-CA---TGTA-GGCA
droAna3	scaffold_13266:5886554-5886734 +	A-------------CCAAC-GTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATC---CGGAGATGGT------------CCTCCATC---------C-------------------TTGGGATTAGTGTTAATTTGTG----------TTTTTTTTATTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCCTAA--CAA-CA---AAAA-GTGA
dp4	chr3:2729279-2729419 -	A------------------CGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAAT---------------------------------------------------------------------------------------GCAATGATCTACGTTAAATTGTGTTTCTT---TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG--CAA-CA---GAAATGTAC
droPer1	super_2:2918784-2918924 -	A------------------CGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAAT---------------------------------------------------------------------------------------GCAATGATCTACGTTAAATTGTGTTTCTT---TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG--CAA-CA---GAAATGTAC
droWil1	scaffold_180745:1541110-1541254 +	AT------------------GTTTTGGGAATTGGCCACTACCTCGCAGTCACGTGATGAG---AGA---------------------------------------------------GATGCAAGAGGACTTTGTATGCC---------------------ATTTGCAT----------TTAAT--AT-TTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGCTTTAAAG--TCATCA---AGAA-G-GA
droVir3	scaffold_12875:1889282-1889470 +	A-------------AAAA-CGATTCGGGAATTGGCCACTACCTCGCAGTCACGTGATCCA---CAAACGCAGC--------------CGGCTCTGGTGCTTG-GGAAA---------AATACAATTTTCTTTTGTTTTCCTGGGCGCCG-------CAACGTTTTGCGT----------T----CA-T-TTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTGCAG--CCA-CAGCGCGAA-GTG-
droMoj3	scaffold_6496:23382296-23382464 -	A-------------AAAA-CGATTCGGGAATTGGCCACTACCTCGCACTCACGTGATGCACTCAAAACGCCGACGAGGACGT---------------------CCAAATT--CCAT---------TTTCT--CGTTTTCCTC--------------TGTCGTTTTGCGT--------------TGAT--TTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCCCCAGCAA-TC---CG-------
droGri2	scaffold_15112:3992495-3992691 +	ATG-----TAATGAAAAAGCGTTCCGGGAATTGGCCACTACCTCGCAGTCACGTGATGCC---ACAAGGCGGG-CACGCCGTGCAACATCCTCTCTTCGTTT-ACACATCTCCTCTT-----------------------------GAGAGGATTGCGTCGTTCCGCCT--------------TGAAT-TTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTCCCt--gtt-gt---tGtt-gttg

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:10032841-10033044 -	NA	ATTT--------------------------T---AT--TTAAGTAC-------AAAGATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCA----------------TGCCGAGATTAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAG-CAACACGAA---G-TGA----
droSim1	chr2R:8799008-8799211 -	1	ATTT--------------------------T---AT--TTAAGTAC-------ATAAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCA----------------TGCCGAGATAAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGCAAG-CAACACGAA---G-TGA----
droSec1	super_1:7540579-7540782 -	1	ATTT--------------------------T---AT--TTAAGTAC-------AGAAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATCCGGA-T---TTGGTAGTTGAC-AAA--TCCTCCT----------------TGCCGAGATTAGTTT-CATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGCAAG-CAGCACGAA---G-TGA----
droYak2	chr2R:9968911-9969114 -	1	TTTT-------------------------TT---AT--TTAATTAC-------AAAGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATCCGGA-T---TTGGTGGTGGAC-CCA--TTCT-CA----------------TTCCGAGATTAGTTT-TATTTT--------GCGTCTTTTGA--ATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACATGGA---G-TAA----
droEre2	scaffold_4845:15804995-15805201 +	1	ATTT--------------------------T---AT--TTAATTAC-------AAAGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACCCAGGTGACACTGATCCGGA-T---TTGGTAGTCGTACAAA--TCCTCCA----------------TTCCGAGTTAAGTTT-CATTCT--------GCGTCTTTTGA--ATTCGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACATGTA---G-GCATA--
droEug1	scf7180000409462:2807286-2807474 +	1	AT------------------------------------------------------GATTCTGGGAACTGGCCACTACCTTGCAGTCACGTGATAAA---AAAACGCAGGTAACTCTGATCCGGA-T---TTGGTAGTTGCCTAAA--GCCTCCA----------------TCCTAAGTTCAGTTTGCTTTTT--------GCGCTTTTT-A--ATTTGATTAGTTCATGTGATGTGACGTAGTGGAACATACCCAGAATTGCAGA-CAACAAAAA---G-TGG----
droBia1	scf7180000301592:178311-178438 -	3	ATTT--------------------------T-----------------------AAGATTCTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAAACACAGGTGACACAGATCTGGG-T---TTGGCAGTCAAC-TAT--GCCTCCA----------------CTCCGATTTAAGTTT-CGCTTG--------GTGTTTTTTAA----------------------------------------------------------------------------
droTak1	scf7180000414188:5828-6024 -	2	ATTGAATAAAATTAATTTTAGAGTTACCTTT---AT--TTAATTTC--------GAAATTCTGGGAATAGGCCACTACCTTGCAGTCACGTGATGAA---AAAACACTGGTGA-----ATCCGGAAT---TTGGTT----------------------------------------------GTTT-TGCTTC--------GTGTTTTTT-A--ATTTGATTAATTCATGTGATGTGACGTAGTGGAACATACCTGGAGTTGCAAA-CAACATAAA---G-TGA----
droEle1	scf7180000486831:22070-22270 -	6	ATAT--------------------------TTAAAT--TTTATTAC--------AAGGATCCGGGAATCGGCCACTACCTTGCATTCACGTGATGAA---AAAACGCAG---ACACTATCCCGGA-T---TTAATGGGTTAT-TTA--TCTCACA----------------TTCTGAGTTCAGTGT-CGTTTT--------GTGTTTTT--A--ATTATAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGATTTGCAAA-CAACATAAG---G-TAA----
droRho1	scf7180000777200:348081-348287 -	1	ACCT-------------------------AT---AT--TTTAT-AT-------CACGATTCTGGAAATCGGCCACTACCTTGCATTCACGTGATGGA---AAAACGCAGGTGTCACTGATCCGGA-T---TTAATGGGTGAT-TTA--TCCTACA----------------TACCGAATTCAGTGT-CGTTTT--------GTGTTTTTT-A--ACTTGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGAATCGCAGT-CAACATAAA---G-TGATAAC
droFic1	scf7180000453948:394481-394662 +	1	ATTT--------------------------C---AT--TTA-------------CAAATTCCGGGAATTGGCCACTACCTTGCAGTCACGTGATTCA---AAACCGCAATCGGCACTAATCCGGT-T---GT---------CTAAA-------------------------TCCGGAGCTCAGTGT-CCTTTT--------GTGGTTTTA-G--GTTCAAATAGTTCATGTGATGTGACGTAGTGGAACATGCCTGGAACAACAAA-CAACACGCA---G-TGA----
droKik1	scf7180000302385:160862-161070 -	1	AAAT--------------------------T---TTTCTTAACAAC-------AAACGTTTCGGGAGTTGGCCACTACCTCGCAGTCACGTGATGCAT--AAAATGCTAATGCCTCTGATCTGGT-T---TTGATATCCATTTATAGAT-ATCCA---T------------TTCCACCTACAGTTG-GCTGAT--------GTGTTT---GACTTTTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGGTGGCCAA-CACCAAAAA---G-TGA----
droAna3	scaffold_13266:5886554-5886734 +	2	AC---------------------------------------------------CAACGTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATCCGGA-G---ATGGTCCTCCAT-----------------------------CCTTGGGATTAGTGT-TAATTT--------GTGTTTTTTTT--ATTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCCTAA-CAACAAAAA---G-TGA----
droBip1	scf7180000395839:44591-44789 +	2	ATTT------------------------------------AAAAAC-------CAACGTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATCCGGA-A---GTGGACATTAAA-TAG--TCCTT-AAC--------------CTAAAAGATTAGTGT-TATTTT--------GTGTTTTCTGA---CTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCTTAA-CAACAAAAA---G-TGA----
dp4	chr3:2729279-2729420 -	1	A-------------------------------------------------------CGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAAT-------------------------------------------------------------------GATCTACGT-TAAATT--------GTGTTTCTT-----TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACAGAAA---TGTAC----
droPer1	super_2:2918784-2918948 -	1	TTGT--------------------------A---AA--CCAAGAAGAACCAAACAACGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAAT-------------------------------------------------------------------GATCTACGT-TAAATT--------GTGTTTCTT-----TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACAGAAA---TGTAC----
droWil1	scaffold_180745:1541090-1541255 +	3	TACG--------------------------A---GT--TCGAGTAC----AATAAATGTTTTGGGAATTGGCCACTACCTCGCAGTCACGTGATGAGA--GAGATGCAAGAGG-----------A-C---TT-------------------------------------------------TGTATGCCATTT--------GCATTTAAT-----ATTTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGCTTTAAAGTCATCAAGAA---G-GAA----
droVir3	scaffold_12875:1889282-1889470 +	1	AA---------------------------------------------------AAACGATTCGGGAATTGGCCACTACCTCGCAGTCACGTGATCCA---CAAACGCAGCCGGCTCTGGT---------------GCTTGGG-AAA--AAT-ACA--ATTTTCTTTTGTTTTCCTGGGCGCCGCAA-CGTTTT--------GCGTTC-------A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTGCAG-CCACAGCGCGAAG-TG-----
droMoj3	scaffold_6496:23382296-23382464 -	2	AA---------------------------------------------------AAACGATTCGGGAATTGGCCACTACCTCGCACTCACGTGATGCACTCAAAACGCCGACGA---------GGA-C---GT---------CCAAA--TT--CCA---TTTTC-----------------TCGTTT-TCCTCTGTCGTTTTGCGT----TGA----TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCC-----CCAGCAA---T-CCG----
droGri2	scaffold_15112:3992495-3992691 +	1	ATGT--------------------------A---AT-------GAA------AAAGCGTTCCGGGAATTGGCCACTACCTCGCAGTCACGTGATGCC---ACAAGGCGGGC-ACGCCGTGCAACA-TCCTCTCTTCGTTTAC-ACA--TCTCCTC----------------TTGAGAGGATTGCGT-CGTTCC--------GCCT----TGA--A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTCCCA-CAACAAGAA---C-AAC----

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

ATTTTATTTAAGTACAAAG-ATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCATG-----------------------------CCGAGATTAGTTTCATTTTGCG----------TCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAG--CAA-CA---CGAA-GTGA

Size

Hit Count

Total Norm

droSim1

ATTTTATTTAAGTACATAA-ATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCATG-----------------------------CCGAGATAAGTTTCATTTTGCG----------TCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGCAAG--CAA-CA---CGAA-GTGA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	20.00	9.00	1.00	10.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	19.00	10.00	2.00	7.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	3.00	3.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA....................................	22	1	1.00	1.00	0.00	0.00	0.00
............................................................................AACTGATx---CGGATTTGGTA................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA......................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	1.00	1.00	0.00	0.00	0.00
............................................................................................................................................................................................................ATGTGACGTAGTGGAACA....................................	18	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................................................................................................................GACGCTGTGGAACATACC................................	18	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.....................................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA....................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	1.00	0.00	0.00	1.00	0.00
................................GGCCACTACCTTGCAGTCACGTG...........................................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.....................................	21	1	1.00	1.00	0.00	0.00	0.00

droSec1

ATTTTATTTAAGTACAGAA-ATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCTTG-----------------------------CCGAGATTAGTTTCATTTTGCG----------TCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGCAAG--CAG-CA---CGAA-GTGA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	8785.00	3443.00	21.00	5321.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	8754.00	3154.00	58.00	5542.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	4810.00	2180.00	7.00	2623.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.......................................	19	1	473.00	187.00	1.00	285.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	467.00	182.00	5.00	280.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	460.00	189.00	0.00	271.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA......................................	21	1	360.00	191.00	2.00	167.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT...................................	23	1	247.00	82.00	2.00	163.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.....................................	22	1	231.00	118.00	1.00	112.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA....................................	22	1	105.00	31.00	1.00	73.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.....................................	22	1	75.00	37.00	0.00	38.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	73.00	29.00	3.00	41.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAACA....................................	22	1	56.00	14.00	0.00	42.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAA......................................	20	1	54.00	10.00	0.00	44.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.....................................	21	1	54.00	23.00	1.00	30.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.....................................	21	1	53.00	10.00	0.00	43.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.......................................	20	1	50.00	24.00	0.00	26.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGCACA....................................	22	1	41.00	36.00	0.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA..................................	24	1	37.00	16.00	0.00	21.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGCAC.....................................	21	1	32.00	31.00	0.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGACA....................................	22	1	31.00	18.00	1.00	12.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC...................................	23	1	24.00	8.00	0.00	16.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGCA......................................	20	1	23.00	20.00	0.00	3.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA....................................	22	1	20.00	7.00	2.00	11.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGA.......................................	19	1	20.00	3.00	0.00	17.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.....................................	21	1	19.00	18.00	0.00	1.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAAC.....................................	21	1	19.00	8.00	0.00	11.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGTACA....................................	22	1	18.00	15.00	0.00	3.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAAC.....................................	20	1	17.00	5.00	0.00	12.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGTAC.....................................	21	1	16.00	16.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAT..................................	24	1	16.00	6.00	0.00	10.00
........................................................................................................................................................................................................CGTGATGTGACGTAGTGGAACA....................................	22	1	16.00	5.00	0.00	11.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAC......................................	20	1	16.00	7.00	0.00	9.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACG....................................	22	1	16.00	7.00	0.00	9.00
.....................................................................................................................................................................................................TCATGTGATGTGACGTAGTGGAAC.....................................	24	1	16.00	10.00	0.00	6.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAT.....................................	22	1	15.00	6.00	0.00	9.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA....................................	22	1	15.00	8.00	0.00	7.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA....................................	21	1	14.00	3.00	1.00	10.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC....................................	22	1	14.00	6.00	0.00	8.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.....................................	21	1	13.00	6.00	0.00	7.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA....................................	22	1	13.00	4.00	1.00	8.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAAC.....................................	21	1	12.00	3.00	0.00	9.00
.......................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAACA....................................	23	1	12.00	5.00	0.00	7.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAACA....................................	21	1	12.00	6.00	0.00	6.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.....................................	21	1	12.00	3.00	0.00	9.00
........................................................................................................................................................................................................TGTGATATGACGTAGTGGAACA....................................	22	1	11.00	0.00	0.00	11.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.....................................	21	1	11.00	4.00	0.00	7.00
........................................................................................................................................................................................................CGTGATGTGACGTAGTGGAAC.....................................	21	1	11.00	3.00	0.00	8.00
........................................................................................................................................................................................................TGTGATGTCACGTAGTGGAAC.....................................	21	1	11.00	5.00	1.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAA......................................	20	1	11.00	5.00	0.00	6.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAA.....................................	21	1	11.00	2.00	0.00	9.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAAC.....................................	21	1	11.00	4.00	0.00	7.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT......................................	20	1	11.00	4.00	0.00	7.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.....................................	21	1	11.00	10.00	0.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGA......................................	20	1	10.00	8.00	0.00	2.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA....................................	22	1	10.00	5.00	0.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGTA......................................	20	1	10.00	10.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTCGAAC.....................................	21	1	10.00	5.00	0.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.....................................	21	1	10.00	2.00	0.00	8.00
........................................................................................................................................................................................................TGTGAxxTGACGTAGTGGAACA....................................	20	1	10.00	1.00	0.00	9.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA......................................	20	1	10.00	4.00	0.00	6.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAG......................................	20	1	10.00	4.00	0.00	6.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAAC.....................................	21	1	10.00	1.00	0.00	9.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAACA....................................	22	1	10.00	5.00	1.00	4.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAACA....................................	22	1	10.00	1.00	0.00	9.00
........................................................................................................................................................................................................TGTGATGTCACGTAGTGGAACA....................................	22	1	10.00	6.00	0.00	4.00
........................................................................................................................................................................................................TGTGATGTGACTTAGTGGAAC.....................................	21	1	10.00	3.00	0.00	7.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAACA....................................	22	1	10.00	0.00	0.00	10.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAAA...................................	23	1	10.00	4.00	0.00	6.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.....................................	21	1	10.00	1.00	0.00	9.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAACA....................................	20	1	9.00	1.00	0.00	8.00
........................................................................................................................................................................................................TGTGATGTGACATAGTGGAACA....................................	22	1	9.00	4.00	0.00	5.00
........................................................................................................................................................................................................TGTGATGTTACGTAGTGGAACA....................................	22	1	9.00	1.00	0.00	8.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.....................................	21	1	9.00	2.00	1.00	6.00
........................................................................................................................................................................................................TGTGATGTAACGTAGTGGAAC.....................................	21	1	9.00	0.00	0.00	9.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA....................................	22	1	9.00	1.00	0.00	8.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAACA....................................	22	1	8.00	4.00	0.00	4.00
........................................................................................................................................................................................................TGTGATATGACGTAGTGGAAC.....................................	21	1	8.00	2.00	0.00	6.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGCAAC.....................................	21	1	8.00	5.00	0.00	3.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAAC.....................................	20	1	8.00	3.00	1.00	4.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAA......................................	20	1	8.00	7.00	0.00	1.00
........................................................................................................................................................................................................TTTGATGTGACGTAGTGGAACA....................................	22	1	8.00	2.00	0.00	6.00
........................................................................................................................................................................................................TGTAATGTGACGTAGTGGAAC.....................................	21	1	8.00	4.00	0.00	4.00
........................................................................................................................................................................................................TGTGATTTGACGTAGTGGAACA....................................	22	1	8.00	1.00	0.00	7.00
........................................................................................................................................................................................................TGTGCTGTGACGTAGTGGAAC.....................................	21	1	8.00	3.00	0.00	5.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAAC.....................................	19	1	8.00	2.00	0.00	6.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAA......................................	20	1	8.00	4.00	0.00	4.00
........................................................................................................................................................................................................TGTGATGTAACGTAGTGGAACA....................................	22	1	8.00	0.00	0.00	8.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGACCA....................................	22	1	8.00	5.00	0.00	3.00
........................................................................................................................................................................................................TGTCATGTGACGTAGTGGAAC.....................................	21	1	7.00	3.00	1.00	3.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAACA....................................	22	1	7.00	1.00	0.00	6.00
........................................................................................................................................................................................................TGTGATGAGACGTAGTGGAAC.....................................	21	1	7.00	0.00	0.00	7.00
.......................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAAC.....................................	22	1	7.00	2.00	0.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGCAACA....................................	22	1	7.00	4.00	0.00	3.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA....................................	22	1	7.00	2.00	0.00	5.00
........................................................................................................................................................................................................TGTGATATGACGTAGTGGAA......................................	20	1	7.00	2.00	0.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAA.......................................	19	1	7.00	2.00	0.00	5.00
........................................................................................................................................................................................................TGTGACGTGACGTAGTGGAAC.....................................	21	1	7.00	2.00	0.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTCGAA......................................	20	1	7.00	2.00	0.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAACA....................................	22	1	6.00	1.00	0.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAAC.....................................	21	1	6.00	0.00	0.00	6.00

droYak2

TTTTTATTTAATTACAAAG-ATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATC---CGGATTTGGTGGTGG-ACCCATTCTC-ATT-----------------------------CCGAGATTAGTTTTATTTTGCG----------TCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG--CAA-CA---TGGA-GTAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	8220.00	11.00	309.00	7155.00	743.00	2.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	8164.00	2.00	319.00	7123.00	718.00	2.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	5253.00	2.00	169.00	4672.00	410.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.......................................	19	1	762.00	0.00	24.00	679.00	59.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	428.00	1.00	10.00	384.00	33.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	410.00	0.00	18.00	358.00	34.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT...................................	23	1	348.00	1.00	13.00	299.00	35.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	89.00	0.00	6.00	75.00	8.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.....................................	21	1	84.00	0.00	2.00	75.00	7.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA....................................	22	1	67.00	0.00	2.00	61.00	4.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA......................................	21	1	59.00	0.00	6.00	50.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC...................................	23	1	49.00	0.00	1.00	42.00	6.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC....................................	22	1	34.00	0.00	2.00	15.00	17.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA....................................	22	1	30.00	0.00	0.00	26.00	4.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.....................................	21	1	27.00	0.00	2.00	19.00	6.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA....................................	22	1	27.00	0.00	2.00	23.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATT....................................	22	1	25.00	0.00	1.00	21.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT......................................	20	1	22.00	0.00	0.00	22.00	0.00	0.00
........................................................................................................................................................................................................TGGGATGTGACGTAGTGGAACA....................................	22	1	20.00	0.00	3.00	7.00	10.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA..................................	24	1	20.00	0.00	0.00	16.00	4.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.....................................	22	1	19.00	1.00	1.00	16.00	1.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.....................................	22	1	19.00	0.00	1.00	15.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGGGGAACA....................................	22	1	19.00	0.00	0.00	18.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAA......................................	20	1	19.00	0.00	0.00	18.00	1.00	0.00
........................................................................................................................................................................................................TGGGATGTGACGTAGTGGAAC.....................................	21	1	17.00	0.00	4.00	3.00	10.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAA......................................	20	1	17.00	0.00	0.00	17.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA....................................	22	1	16.00	0.00	1.00	14.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGGGGAA......................................	20	1	16.00	0.00	0.00	15.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAAC.....................................	21	1	16.00	0.00	5.00	4.00	7.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACATT..................................	24	1	15.00	1.00	2.00	10.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGACCA....................................	22	1	15.00	0.00	0.00	6.00	9.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.....................................	21	1	14.00	0.00	1.00	7.00	6.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGGGGAAC.....................................	21	1	14.00	0.00	0.00	12.00	2.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAT.....................................	22	1	13.00	0.00	1.00	10.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAAC.....................................	21	1	13.00	0.00	0.00	13.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.....................................	21	1	12.00	0.00	0.00	11.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAT....................................	22	1	12.00	0.00	0.00	12.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAAC.....................................	21	1	12.00	0.00	1.00	7.00	4.00	0.00
........................................................................................................................................................................................................TGGGATGTGACGTAGTGGAA......................................	20	1	11.00	0.00	0.00	1.00	10.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.....................................	21	1	11.00	0.00	1.00	7.00	3.00	0.00
........................................................................................................................................................................................................CGTGATGTGACGTAGTGGAAC.....................................	21	1	11.00	0.00	3.00	8.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA....................................	22	1	11.00	0.00	0.00	9.00	2.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAAC.....................................	21	1	11.00	0.00	0.00	11.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA....................................	22	1	11.00	0.00	0.00	8.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGCAAC.....................................	21	1	10.00	0.00	0.00	6.00	4.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGACC.....................................	21	1	10.00	0.00	1.00	3.00	6.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.....................................	21	1	10.00	0.00	1.00	5.00	4.00	0.00
........................................................................................................................................................................................................TGAGATGTGACGTAGTGGAACA....................................	22	1	10.00	0.00	2.00	4.00	4.00	0.00
.......................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAACA....................................	23	1	10.00	0.00	0.00	10.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTCGTGGAA......................................	20	1	10.00	0.00	0.00	8.00	2.00	0.00
........................................................................................................................................................................................................CGTGATGTGACGTAGTGGAACA....................................	22	1	10.00	0.00	0.00	8.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGCACA....................................	22	1	10.00	0.00	3.00	3.00	4.00	0.00
.......................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAAC.....................................	22	1	9.00	0.00	0.00	8.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAACA....................................	22	1	9.00	0.00	2.00	2.00	4.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAACA....................................	22	1	9.00	0.00	2.00	3.00	4.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGACA....................................	22	1	9.00	0.00	0.00	6.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATA....................................	22	1	9.00	0.00	1.00	8.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.....................................	21	1	9.00	0.00	0.00	6.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAC......................................	20	1	9.00	0.00	2.00	4.00	3.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA......................................	20	1	9.00	0.00	0.00	8.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAA......................................	20	1	9.00	0.00	2.00	3.00	4.00	0.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.....................................	21	1	8.00	0.00	1.00	5.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTCGTGGAACA....................................	22	1	8.00	0.00	1.00	4.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAACA....................................	22	1	8.00	0.00	1.00	3.00	4.00	0.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAACA....................................	20	1	8.00	0.00	0.00	8.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAA......................................	20	1	8.00	0.00	1.00	5.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAC......................................	20	1	8.00	0.00	0.00	8.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACG....................................	22	1	8.00	0.00	0.00	3.00	5.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.......................................	20	1	8.00	0.00	1.00	6.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAA......................................	20	1	7.00	0.00	0.00	6.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGCCGTAGTGGAACA....................................	22	1	7.00	0.00	1.00	2.00	4.00	0.00
........................................................................................................................................................................................................TTTGATGTGACGTAGTGGAACA....................................	22	1	7.00	0.00	1.00	5.00	1.00	0.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAAC.....................................	20	1	7.00	0.00	1.00	5.00	1.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAAC.....................................	20	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAG...................................	23	1	7.00	0.00	0.00	6.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA....................................	22	1	7.00	0.00	0.00	4.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAA......................................	20	1	7.00	0.00	0.00	4.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGA.......................................	19	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................................................................................................................................TATGATGTGACGTAGTGGAAC.....................................	21	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.....................................	21	1	7.00	0.00	2.00	5.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAAC.....................................	21	1	7.00	0.00	0.00	6.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAAC.....................................	21	1	7.00	0.00	2.00	5.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGAGGAA......................................	20	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGG........................................	18	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGA......................................	20	1	7.00	0.00	0.00	3.00	4.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGAGGAACA....................................	22	1	7.00	0.00	1.00	5.00	1.00	0.00
........................................................................................................................................................................................................TGTGACGTGACGTAGTGGAACA....................................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTTACGTAGTGGAAC.....................................	21	1	6.00	0.00	1.00	4.00	1.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA....................................	21	1	6.00	0.00	0.00	6.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTAGAAC.....................................	21	1	6.00	0.00	1.00	4.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGAGGAAC.....................................	21	1	6.00	0.00	0.00	6.00	0.00	0.00
........................................................................................................................................................................................................TGTGACGTGACGTAGTGGAAC.....................................	21	1	6.00	0.00	1.00	5.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTCGAAC.....................................	21	1	6.00	0.00	0.00	4.00	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTCGTGGAAC.....................................	21	1	6.00	0.00	0.00	1.00	5.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGCA......................................	20	1	6.00	0.00	2.00	0.00	4.00	0.00
........................................................................................................................................................................................................TGTGAxxTGACGTAGTGGAAC.....................................	19	1	6.00	0.00	0.00	6.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTACTGGAACA....................................	22	1	6.00	0.00	0.00	6.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAACA....................................	22	1	6.00	0.00	1.00	3.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAG......................................	20	1	6.00	0.00	0.00	5.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTCGAA......................................	20	1	6.00	0.00	2.00	4.00	0.00	0.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAACA....................................	22	1	6.00	0.00	0.00	4.00	2.00	0.00

droEre2

ATTTTATTTAATTACAAAG-ATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACCCAGGTGACACTGATC---CGGATTTGGTAGTCGTACAAATCCTCCATT-----------------------------CCGAGTTAAGTTTCATTCTGCG----------TCTTTTGAATTCGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG--CAA-CA---TGTA-GGCA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	494.00	13.00	15.00	15.00	451.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	370.00	7.00	10.00	20.00	333.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	208.00	0.00	9.00	1.00	198.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	29.00	0.00	0.00	2.00	27.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.......................................	19	1	13.00	0.00	0.00	1.00	12.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	12.00	2.00	1.00	0.00	9.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT...................................	23	1	12.00	0.00	0.00	0.00	12.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.......................................	20	1	8.00	0.00	2.00	0.00	6.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAACA....................................	22	1	7.00	0.00	0.00	0.00	7.00
........................................................................................................................................................................................................TGTGATGTTACGTAGTGGAACA....................................	22	1	7.00	0.00	0.00	0.00	7.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.....................................	22	1	7.00	0.00	0.00	0.00	7.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	7.00	0.00	0.00	0.00	7.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA......................................	21	1	6.00	0.00	0.00	0.00	6.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAAC.....................................	21	1	6.00	1.00	0.00	1.00	4.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA....................................	22	1	5.00	0.00	0.00	0.00	5.00
........................................................................................................................................................................................................TGTGATGTTACGTAGTGGAA......................................	20	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................................................TGTAATGTGACGTAGTGGAACA....................................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.....................................	21	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................................................TGTTATGTGACGTAGTGGAACA....................................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.....................................	21	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................................................TTTGATGTGACGTAGTGGAAC.....................................	21	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................................................TGTGATGTGACTTAGTGGAAC.....................................	21	1	3.00	0.00	0.00	1.00	2.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAACA....................................	22	1	3.00	0.00	1.00	0.00	2.00

droAna3

A-------------CCAAC-GTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATC---CGGAGATGGT------------CCTCCATC---------C-------------------TTGGGATTAGTGTTAATTTGTG----------TTTTTTTTATTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCCTAA--CAA-CA---AAAA-GTGA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	509.00	436.00	66.00	7.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	500.00	428.00	67.00	3.00	2.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	456.00	365.00	85.00	4.00	2.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.......................................	19	1	94.00	67.00	24.00	2.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	32.00	24.00	8.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	26.00	22.00	4.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC...................................	23	1	22.00	19.00	2.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	10.00	9.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT...................................	23	1	9.00	7.00	2.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.....................................	21	1	7.00	4.00	3.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACATAGTGGAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.....................................	22	1	6.00	4.00	2.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA......................................	21	1	5.00	4.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAA......................................	20	1	4.00	3.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAA......................................	20	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTTACGTAGTGGAA......................................	20	1	4.00	1.00	3.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.....................................	21	1	3.00	3.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.....................................	21	1	3.00	0.00	3.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA..................................	24	1	3.00	2.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACATAGTGGAA......................................	20	1	3.00	3.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGG........................................	18	1	3.00	1.00	2.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAA......................................	20	1	3.00	1.00	2.00	0.00	0.00
........................................................................................................................................................................................................TGGGATGTGACGTAGTGGAA......................................	20	1	3.00	0.00	2.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGAAGTAGTGGAAC.....................................	21	1	3.00	3.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATA....................................	22	1	3.00	3.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAA......................................	20	1	3.00	3.00	0.00	0.00	0.00

dp4

A------------------CGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAAT---------------------------------------------------------------------------------------GCAATGATCTACGTTAAATTGTGTTTCTT---TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG--CAA-CA---GAAATGTAC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	8932.00	8680.00	68.00	177.00	7.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	8657.00	8462.00	29.00	158.00	8.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	5262.00	5192.00	9.00	61.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.......................................	19	1	647.00	638.00	0.00	9.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	218.00	217.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	178.00	173.00	1.00	4.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT...................................	23	1	167.00	166.00	0.00	1.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA......................................	21	1	135.00	131.00	3.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	129.00	124.00	2.00	2.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.....................................	21	1	72.00	72.00	0.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.....................................	22	1	58.00	55.00	2.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC....................................	22	1	48.00	45.00	0.00	1.00	2.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA....................................	22	1	32.00	31.00	1.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.......................................	20	1	25.00	25.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT......................................	20	1	24.00	24.00	0.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.....................................	22	1	19.00	19.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAAC.....................................	21	1	18.00	16.00	1.00	1.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA....................................	22	1	16.00	14.00	1.00	1.00	0.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAACA....................................	21	1	16.00	15.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.....................................	21	1	15.00	15.00	0.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA....................................	22	1	14.00	14.00	0.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.....................................	21	1	14.00	14.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAACA....................................	22	1	14.00	12.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA....................................	22	1	13.00	12.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAA......................................	20	1	12.00	12.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.....................................	21	1	12.00	9.00	0.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC...................................	23	1	12.00	11.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA....................................	22	1	11.00	11.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTCGAAC.....................................	21	1	11.00	9.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAAC.....................................	21	1	11.00	11.00	0.00	0.00	0.00
.......................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAAC.....................................	22	1	11.00	11.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA....................................	22	1	10.00	8.00	1.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.....................................	21	1	10.00	10.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA..................................	24	1	10.00	10.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.....................................	21	1	10.00	10.00	0.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAACA....................................	23	1	9.00	9.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAA......................................	20	1	9.00	8.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAA......................................	20	1	9.00	9.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGACC.....................................	21	1	9.00	9.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTAGAACA....................................	22	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.....................................	21	1	8.00	7.00	0.00	1.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAAC.....................................	20	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.....................................	21	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGCACA....................................	22	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAAC.....................................	21	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................CGTGATGTGACGTAGTGGAA......................................	20	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA......................................	20	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAACA....................................	22	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAC......................................	20	1	8.00	7.00	0.00	0.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACTTT..................................	24	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAG......................................	20	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGT.......................................	19	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TTTGATGTGACGTAGTGGAACA....................................	22	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACTT...................................	23	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACATT..................................	24	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.....................................	21	1	7.00	6.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTAATGTGACGTAGTGGAA......................................	20	1	7.00	7.00	0.00	0.00	0.00
.......................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAACA....................................	23	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATATGACGTAGTGGAAC.....................................	21	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA....................................	22	1	7.00	7.00	0.00	0.00	0.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAAC.....................................	20	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTCGTGGAAC.....................................	21	1	7.00	6.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................CGTGATGTGACGTAGTGGAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAA.......................................	19	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACTTAGTGGAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGACGTGACGTAGTGGAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGCAACA....................................	22	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGACA....................................	22	1	6.00	5.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGAxxTGACGTAGTGGAACA....................................	20	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGCAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGA......................................	20	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACTTAGTGGAACA....................................	22	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAA......................................	20	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TATGATGTGACGTAGTGGAACA....................................	22	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACATAGTGGAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATxTGACGTAGTGGAAC.....................................	20	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAATGGAAC.....................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATTTGACGTAGTGGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATATGACGTAGTGGAA......................................	20	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACTTTT.................................	25	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TTTGATGTGACGTAGTGGAAC.....................................	21	1	5.00	4.00	0.00	0.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTAGAAC.....................................	21	1	5.00	3.00	0.00	2.00	0.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAAC.....................................	19	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGACGTGACGTAGTGGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGGGATGTGACGTAGTGGAACA....................................	22	1	5.00	3.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTAACGTAGTGGAA......................................	20	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAA......................................	20	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATCTGACGTAGTGGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTCGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAT..................................	24	1	4.00	4.00	0.00	0.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA....................................	21	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAC......................................	20	1	4.00	4.00	0.00	0.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAA......................................	19	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACCTAGTGGAA......................................	20	1	4.00	4.00	0.00	0.00	0.00
.......................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAA......................................	21	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAACA....................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGAAGTAGTGGAACA....................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGCA......................................	20	1	4.00	3.00	1.00	0.00	0.00

droPer1

A------------------CGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAAT---------------------------------------------------------------------------------------GCAATGATCTACGTTAAATTGTGTTTCTT---TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG--CAA-CA---GAAATGTAC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	3492.00	3461.00	2.00	19.00	10.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	2906.00	2863.00	6.00	29.00	8.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	1577.00	1568.00	2.00	4.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.......................................	19	1	117.00	115.00	0.00	1.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	46.00	46.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	44.00	43.00	0.00	1.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA......................................	21	1	42.00	40.00	0.00	0.00	2.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.....................................	22	1	40.00	37.00	0.00	2.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	28.00	28.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT...................................	23	1	18.00	17.00	0.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA....................................	22	1	11.00	11.00	0.00	0.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.....................................	22	1	10.00	10.00	0.00	0.00	0.00	0.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAACA....................................	20	1	8.00	8.00	0.00	0.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.......................................	20	1	8.00	7.00	0.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.....................................	21	1	7.00	7.00	0.00	0.00	0.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAA......................................	19	1	7.00	7.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.....................................	21	1	7.00	7.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC....................................	22	1	7.00	7.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA....................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.....................................	21	1	6.00	6.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGAGGAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA....................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTAGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAAC.....................................	20	1	5.00	5.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAAC.....................................	21	1	5.00	4.00	1.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA..................................	24	1	5.00	5.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC...................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAACA....................................	21	1	5.00	5.00	0.00	0.00	0.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA....................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAA......................................	19	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTAATGTGACGTAGTGGAACA....................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATA....................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.....................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA....................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.....................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT......................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA....................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA....................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAACA....................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTAATGTGACGTAGTGGAAC.....................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATxTGACGTAGTGGAACA....................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.....................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATATGACGTAGTGGAAC.....................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAA......................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA....................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA......................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TATGATGTGACGTAGTGGAA......................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00

droWil1

AT------------------GTTTTGGGAATTGGCCACTACCTCGCAGTCACGTGATGAG---AGA---------------------------------------------------GATGCAAGAGGACTTTGTATGCC---------------------ATTTGCAT----------TTAAT--AT-TTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGCTTTAAAG--TCATCA---AGAA-G-GA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	7376.00	5492.00	38.00	1797.00	49.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	4812.00	3808.00	19.00	961.00	24.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	2756.00	2473.00	16.00	262.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.......................................	19	1	311.00	289.00	1.00	21.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	136.00	100.00	1.00	35.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT...................................	23	1	115.00	95.00	1.00	17.00	2.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.....................................	22	1	111.00	59.00	0.00	49.00	3.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	95.00	76.00	0.00	19.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA......................................	21	1	74.00	52.00	1.00	21.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	51.00	39.00	0.00	11.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC....................................	22	1	39.00	27.00	0.00	8.00	4.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.....................................	21	1	37.00	27.00	0.00	10.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA....................................	22	1	19.00	15.00	0.00	4.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA....................................	22	1	17.00	14.00	0.00	3.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAT.....................................	22	1	16.00	9.00	0.00	7.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.....................................	22	1	16.00	7.00	1.00	8.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.......................................	20	1	16.00	10.00	2.00	3.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA....................................	22	1	15.00	3.00	0.00	12.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.....................................	21	1	14.00	9.00	0.00	3.00	2.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAACA....................................	22	1	13.00	11.00	0.00	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA....................................	22	1	12.00	6.00	0.00	6.00	0.00
........................................................................................................................................................................................................TTTGATGTGACGTAGTGGAACA....................................	22	1	12.00	7.00	0.00	3.00	2.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAA......................................	20	1	12.00	11.00	0.00	1.00	0.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAACA....................................	20	1	11.00	3.00	0.00	5.00	3.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA....................................	21	1	10.00	7.00	0.00	1.00	2.00
........................................................................................................................................................................................................TGTGACGTGACGTAGTGGAACA....................................	22	1	9.00	7.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.....................................	21	1	9.00	8.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGACA....................................	22	1	9.00	4.00	0.00	5.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGGGGAACA....................................	22	1	8.00	5.00	0.00	3.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAAC.....................................	21	1	8.00	7.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTxGAACA....................................	21	1	8.00	4.00	0.00	3.00	1.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA....................................	22	1	8.00	7.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.....................................	21	1	8.00	5.00	0.00	3.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAAC.....................................	20	1	8.00	5.00	0.00	1.00	2.00
........................................................................................................................................................................................................TGTGATGTGAAGTAGTGGAACA....................................	22	1	8.00	1.00	0.00	7.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT......................................	20	1	8.00	7.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGCTGTGACGTAGTGGAACA....................................	22	1	8.00	3.00	0.00	5.00	0.00
........................................................................................................................................................................................................TGTGATGTGACATAGTGGAACA....................................	22	1	8.00	4.00	0.00	4.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTCGAACA....................................	22	1	8.00	6.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAA......................................	20	1	8.00	7.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.....................................	21	1	7.00	5.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGAGGAACA....................................	22	1	7.00	5.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.....................................	21	1	7.00	3.00	0.00	3.00	1.00
.......................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAACA....................................	23	1	7.00	6.00	0.00	1.00	0.00
........................................................................................................................................................................................................AGTGATGTGACGTAGTGGAAC.....................................	21	1	7.00	3.00	0.00	4.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.....................................	21	1	6.00	5.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAACA....................................	22	1	6.00	5.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAA......................................	20	1	6.00	5.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAA......................................	20	1	6.00	5.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAACA....................................	22	1	6.00	4.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACTTAGTGGAAC.....................................	21	1	6.00	5.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTAGAAC.....................................	21	1	6.00	4.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGACCA....................................	22	1	6.00	3.00	0.00	3.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAACA....................................	23	1	6.00	4.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATCTGACGTAGTGGAAC.....................................	21	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAG.....................................	21	1	6.00	5.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAAC.....................................	21	1	6.00	4.00	0.00	2.00	0.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAAC.....................................	20	1	6.00	5.00	0.00	1.00	0.00
.......................................................................................................................................................................................................CTGTGATGTGACGTAGTGGAAC.....................................	22	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGCACA....................................	22	1	5.00	4.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATA....................................	22	1	5.00	4.00	0.00	1.00	0.00
........................................................................................................................................................................................................CGTGATGTGACGTAGTGGAAC.....................................	21	1	5.00	4.00	0.00	1.00	0.00
........................................................................................................................................................................................................CGTGATGTGACGTAGTGGAACA....................................	22	1	5.00	4.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGAGATGTGACGTAGTGGAACA....................................	22	1	5.00	0.00	0.00	5.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAACA....................................	22	1	5.00	3.00	1.00	0.00	1.00
........................................................................................................................................................................................................TGTGATATGACGTAGTGGAAC.....................................	21	1	5.00	3.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.....................................	21	1	5.00	3.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTAATGTGACGTAGTGGAACA....................................	22	1	5.00	3.00	0.00	2.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAA......................................	19	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACCTAGTGGAACA....................................	22	1	5.00	3.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAACA....................................	22	1	5.00	2.00	0.00	3.00	0.00
........................................................................................................................................................................................................TGTGATATGACGTAGTGGAACA....................................	22	1	5.00	2.00	0.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAAC.....................................	21	1	5.00	3.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTTACGTAGTGGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAAC.....................................	19	1	5.00	3.00	0.00	1.00	1.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA......................................	20	1	5.00	4.00	0.00	1.00	0.00
........................................................................................................................................................................................................TATGATGTGACGTAGTGGAACA....................................	22	1	5.00	2.00	0.00	2.00	1.00
........................................................................................................................................................................................................TGTGATGTGACATAGTGGAAC.....................................	21	1	5.00	3.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACTTAGTGGAACA....................................	22	1	5.00	2.00	0.00	2.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGGGGAAC.....................................	21	1	5.00	4.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAA......................................	20	1	5.00	4.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTAACGTAGTGGAACA....................................	22	1	5.00	1.00	0.00	4.00	0.00
........................................................................................................................................................................................................TGTGATGTCACGTAGTGGAACA....................................	22	1	5.00	4.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.....................................	21	1	5.00	1.00	0.00	4.00	0.00
........................................................................................................................................................................................................TGTGAAGTGACGTAGTGGAACA....................................	22	1	4.00	1.00	0.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACCC...................................	23	1	4.00	0.00	0.00	4.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTCGTGGAAC.....................................	21	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................GGTGATGTGACGTAGTGGAACA....................................	22	1	4.00	1.00	0.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAACA....................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAACA....................................	22	1	4.00	1.00	0.00	2.00	1.00
........................................................................................................................................................................................................TGTGACGTGACGTAGTGGAAC.....................................	21	1	4.00	3.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGCCGTAGTGGAACA....................................	22	1	4.00	3.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA....................................	22	1	4.00	3.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGCAAC.....................................	21	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAAC.....................................	21	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAC......................................	20	1	4.00	3.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTCATGTGACGTAGTGGAAC.....................................	21	1	4.00	3.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGACC.....................................	21	1	4.00	3.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTACTGGAACA....................................	22	1	4.00	3.00	0.00	0.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGGGGAA......................................	20	1	4.00	4.00	0.00	0.00	0.00

droVir3

A-------------AAAA-CGATTCGGGAATTGGCCACTACCTCGCAGTCACGTGATCCA---CAAACGCAGC--------------CGGCTCTGGTGCTTG-GGAAA---------AATACAATTTTCTTTTGTTTTCCTGGGCGCCG-------CAACGTTTTGCGT----------T----CA-T-TTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTGCAG--CCA-CAGCGCGAA-GTG-	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	496.00	324.00	130.00	15.00	25.00	2.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	473.00	301.00	117.00	20.00	31.00	4.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	377.00	308.00	67.00	1.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.......................................	19	1	71.00	60.00	7.00	1.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	23.00	15.00	5.00	2.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	20.00	18.00	2.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT...................................	23	1	13.00	8.00	4.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT......................................	20	1	8.00	8.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.....................................	21	1	6.00	5.00	1.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC....................................	22	1	6.00	4.00	0.00	0.00	2.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA......................................	21	1	6.00	5.00	1.00	0.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.....................................	22	1	5.00	2.00	1.00	0.00	2.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAACA....................................	22	1	4.00	1.00	0.00	0.00	2.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAC......................................	20	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGCA....................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAA......................................	19	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.....................................	21	1	3.00	2.00	1.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGGGATGTGACGTAGTGGAAC.....................................	21	1	3.00	1.00	2.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAACA....................................	22	1	3.00	2.00	1.00	0.00	0.00	0.00

droMoj3

A-------------AAAA-CGATTCGGGAATTGGCCACTACCTCGCACTCACGTGATGCACTCAAAACGCCGACGAGGACGT---------------------CCAAATT--CCAT---------TTTCT--CGTTTTCCTC--------------TGTCGTTTTGCGT--------------TGAT--TTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCCCCAGCAA-TC---CG-------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	6915.00	6786.00	72.00	52.00	5.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	6156.00	5995.00	82.00	69.00	10.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	4406.00	4270.00	67.00	69.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	1031.00	1017.00	11.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.......................................	19	1	517.00	488.00	20.00	9.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT...................................	23	1	338.00	333.00	2.00	3.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	216.00	213.00	3.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAA......................................	21	1	181.00	173.00	3.00	5.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAC.....................................	22	1	154.00	148.00	5.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	81.00	79.00	1.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAA..................................	24	1	56.00	55.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAT.....................................	21	1	48.00	46.00	2.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAT..................................	24	1	46.00	45.00	0.00	1.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAT.....................................	22	1	35.00	35.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAC...................................	23	1	30.00	29.00	0.00	1.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGA.......................................	20	1	28.00	28.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAG...................................	23	1	27.00	27.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT......................................	20	1	23.00	23.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACATT..................................	24	1	21.00	19.00	1.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAAC.....................................	21	1	15.00	13.00	1.00	1.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAAC.....................................	21	1	14.00	14.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAA......................................	20	1	14.00	14.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAG......................................	20	1	13.00	12.00	1.00	0.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAAA.....................................	22	1	13.00	13.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAAC.....................................	21	1	13.00	13.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAAC.....................................	21	1	13.00	12.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAAA....................................	22	1	11.00	10.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATTTGACGTAGTGGAACA....................................	22	1	11.00	11.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAA......................................	20	1	10.00	10.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACTT...................................	23	1	10.00	10.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAAC.....................................	21	1	10.00	10.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGAAGTAGTGGAACA....................................	22	1	9.00	9.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAACA....................................	22	1	9.00	8.00	1.00	0.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAA......................................	19	1	9.00	9.00	0.00	0.00	0.00
........................................................................................................................................................................................................TTTGATGTGACGTAGTGGAACA....................................	22	1	9.00	9.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAA.......................................	19	1	9.00	9.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAACA....................................	22	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGAxxTGACGTAGTGGAACA....................................	20	1	8.00	8.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAAC.....................................	21	1	8.00	7.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAAC.....................................	21	1	8.00	7.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAAC.....................................	21	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTxGAACA....................................	21	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................CGTGATGTGACGTAGTGGAACA....................................	22	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTTGAACA....................................	22	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TTTGATGTGACGTAGTGGAA......................................	20	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................CGTGATGTGACGTAGTGGAAC.....................................	21	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTGGTGGAAC.....................................	21	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAC......................................	20	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAAC.....................................	21	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAACA....................................	22	1	7.00	6.00	1.00	0.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAAC.....................................	20	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACA....................................	22	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TTTGATGTGACGTAGTGGAAC.....................................	21	1	7.00	7.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGA......................................	20	1	7.00	4.00	0.00	3.00	0.00
.........................................................................................................................................................................................................TTGATGTGACGTAGTGGAACA....................................	21	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACTTAGTGGAA......................................	20	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGAxxTGACGTAGTGGAAC.....................................	19	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTCGAACA....................................	22	1	6.00	5.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGGGATGTGACGTAGTGGAACA....................................	22	1	6.00	4.00	1.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATA....................................	22	1	6.00	5.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGG........................................	18	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTAGAAC.....................................	21	1	6.00	5.00	0.00	1.00	0.00
.......................................................................................................................................................................................................ATGTGATGTGACGTAGTGGAACA....................................	23	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTTACGTAGTGGAACA....................................	22	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAG.....................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAA......................................	20	1	5.00	4.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAC......................................	20	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC....................................	22	1	5.00	3.00	2.00	0.00	0.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAA......................................	18	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGCAGTGGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGCGATGTGACGTAGTGGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTCACGTAGTGGAAC.....................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTAATGTGACGTAGTGGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAACAA...................................	23	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAAC.....................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACTTAGTGGAAC.....................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGAGATGTGACGTAGTGGAAC.....................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATTTGACGTAGTGGAAC.....................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAACA....................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGGTGTGACGTAGTGGAAC.....................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACATAGTGGAAC.....................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TCTGATGTGACGTAGTGGAA......................................	20	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAGC.....................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGCGGAA......................................	20	1	5.00	4.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGTAACA....................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTTATGTGACGTAGTGGAACA....................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTAACGTAGTGGAAC.....................................	21	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGGCGTAGTGGAA......................................	20	1	4.00	3.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATATGACGTAGTGGAACA....................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTTACGTAGTGGAA......................................	20	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAACA....................................	20	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAATT....................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTTACGTAGTGGAAC.....................................	21	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGACGTGACGTAGTGGAACA....................................	22	1	4.00	3.00	0.00	1.00	0.00
........................................................................................................................................................................................................TGGGATGTGACGTAGTGGAA......................................	20	1	4.00	3.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTAATGTGACGTAGTGGAAC.....................................	21	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGGGATGTGACGTAGTGGAAC.....................................	21	1	4.00	2.00	2.00	0.00	0.00
.........................................................................................................................................................................................................GTGATGTGACGTAGTGGAACA....................................	21	1	4.00	3.00	1.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAA......................................	20	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTCGAAC.....................................	21	1	3.00	3.00	0.00	0.00	0.00

droGri2

ATG-----TAATGAAAAAGCGTTCCGGGAATTGGCCACTACCTCGCAGTCACGTGATGCC---ACAAGGCGGG-CACGCCGTGCAACATCCTCTCTTCGTTT-ACACATCTCCTCTT-----------------------------GAGAGGATTGCGTCGTTCCGCCT--------------TGAAT-TTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTCCCt--gtt-gt---tGtt-gttg	Size	Hit Count	Total Norm	V109 Male body
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAA......................................	20	1	60.00	60.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAC.....................................	21	1	32.00	32.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACA....................................	22	1	31.00	31.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGA.......................................	19	1	9.00	9.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAT...................................	23	1	9.00	9.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAAA.....................................	21	1	3.00	3.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACT....................................	22	1	3.00	3.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAA...................................	23	1	2.00	2.00
........................................................................................................................................................................................................TGTGATGCGACGTAGTGGAA......................................	20	1	1.00	1.00
........................................................................................................................................................................................................TGTGAAGTGACGTAGTGGAACA....................................	22	1	1.00	1.00
........................................................................................................................................................................................................TGTGATCTGACGTAGTGGAAC.....................................	21	1	1.00	1.00
........................................................................................................................................................................................................TGTGATCTGACGTAGTGGAACAT...................................	23	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTACTGGAA......................................	20	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTATTGGAA......................................	20	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGGAC.....................................	21	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACC....................................	22	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAA.......................................	19	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAACAAT..................................	24	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAC......................................	20	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGATGTAGTGGAACA....................................	22	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGGAT......................................	20	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTCACGTAGTGGAA......................................	20	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGCAAC.....................................	21	1	1.00	1.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAAC.....................................	19	1	1.00	1.00
..........................................................................................................................................................................................................TGATGTGACGTAGTGGAA......................................	18	1	1.00	1.00
........................................................................................................................................................................................................TGTGATGTGACGTAGTGAAAC.....................................	21	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image