dme-mir-988- Best orthologs

dme-mir-988	chr2R:8046377-8046475 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 8046394-8046414
   star strand at position 8046429-8046450
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2R:8046362-8046490 -		1	CAAAAG-----------AACATAGTTG--------A----------------------------------CGGCGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATCTGC--GAAA----TACA-------------------C--AGTGGTAT
droSim1	chr2R_random:2089209-2089337 -	LASTZ	1	CTAGAG-----------AACATTTTTG--------A----------------------------------TGGCGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATCTGA--GAAA----TACA-------------------C--AGTGATAT
droSec1	super_1:5591420-5591548 -	LASTZ	1	CTAGAG-----------AACATTTTTG--------A----------------------------------TGGCGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATCTGC--GAAA----TACA-------------------C--AGTGTTTT
droYak2	chr2R:8904838-8904966 +	LASTZ	1	CTAAAT-----------AACATTTTTC--------A----------------------------------TGGCGT------------------TACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGACCTGC--GAAA----TACA-------------------C--AGGGATAT
droEre2	scaffold_4845:17747735-17747863 +	LASTZ	1	CAGAAA-----------AACATATTTG--------A----------------------------------TGACGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGACCTGC--GAAA----TACA-------------------C--AGTGTTAT
droEug1	scf7180000409462:417379-417508 +	LASTZ	4	TATAAA------------TCCGAATAA--------ATTCC--------------------------------TCGG------------------CAATGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGATGAGTTCCA--TA-----AACAAC--------------------CCGAATAG
droBia1	scf7180000302292:862273-862408 -	LASTZ	4	AAAAA------------AATGTCTTCA--------ACTCT--------------------------------TCAG------------------TACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAGTCCG-TTA------AACATCACCA-------------A--ACGAATAT
droTak1	scf7180000415260:195646-195766 +	LASTZ	4	TGAATA-----------AATA-------------------------------------------------TAGCAG------------------TTCAGGACATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAATCCG---AAA----TACAAC---------------------GCCAAAT
droEle1	scf7180000491214:3580572-3580696 -	LASTZ	4	CACACG-----------AGGATTT---------------T--------------------------------CCGG------------------TTCAGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAGACCTATGA------AACAAC--------------------ATTAGTTA
droRho1	scf7180000779932:485536-485675 -	LASTZ	4	CAGTG------------AACAAATTGG--------ATTGT--------------------------------CCGA------------------CTCTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAGTCCCAC--A-A---AACAACATTAAT-TA--------A--AGTGGTAA
droFic1	scf7180000453809:442538-442687 -	LASTZ	4	TAAAAT-----------AA-----TTG--------G-TGTAG----------------------G-----GGATATTAAA----------GT--ATCTGGGCGTTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGGATCCCAC--A-T---AACATCAAAT----G-AAATAAGC--TGAAGTGA
droKik1	scf7180000302367:405235-405359 +	LASTZ	4	CTTGG--------------CATTTG---------------------------------------------TGACTA--------TC--------AAGTGGGCATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGTATTTGAT--GATCCCCTTGTTGCAAACCTCACGCC--AAAGATGGAATCC--TATC----CACATC---------------------AAGGAAG
droAna3	scaffold_13266:2579688-2579821 +	LASTZ	1	TAATGG-----------AATCAGT-----AAGTGGA----------------------------------AAGGTG------------------TACTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATAGGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--CAAGGTGCTTTCCA--AC-----GGCAACA----------------T--ATCAGCAA
droBip1	scf7180000396759:1640703-1640838 +	LASTZ	4	CTAAGGGTTGAATAGTGAACAGG---------------------------------------------------TT---------------TTTTACTGGACATTTTGGGTGTGTGATTTGTGGCAATGTGATAGGTATTTGAT--AATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATATCCAT--A-T---AGCAACGTTATT-------------------AAG
dp4	chr3:405625-405769 -	LASTZ	1	CCGGAT-----------AAC---T--G-------------------------GGTATCCAGGAA------TCCAGA------------------CTGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAATCCCAC--A-CC--TACA---CTCTCATATAA---------TGATCAT
droPer1	super_2:590063-590227 -	LASTZ	1	AAGAAA-----------AAAGTTGTTA---T----ATC---CCGGATAACTGGGTATCCAGGAA------TCCAGA------------------CTGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAATCCCAC--A-CC--TACA---CTCTCAGATAA---------TGATCAT
droWil1	scaffold_181141:3254354-3254482 +	LASTZ	1	AAGTA--------------CATTT--GTTTAGTTAA----------------------------------AACGAA------------------TTGTGGGCATTTCGGGCGTGTGATTTGTAGCAAAGTGATATGTACTTGAT--AATCCCCTTGTTGCAAACCTCACGCCGGAAAGATGTCTCC----AAA----TACATC--------------------AG-----T
droVir3	scaffold_12875:19840344-19840491 +	LASTZ	1	TATGCA-------------CAGA--TC--------A-TGTCC----------------------AG----AGTGTGTAAT----------AT--ATCTGCGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC-TTGGATTCCATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGGCG----C--A-TTTAACCAGCAATA-----TAAA----G--ATTCATGT
droMoj3	scaffold_6496:6364073-6364233 -	LASTZ	1	TGGATA-----------AAGACTA---------------TTC----------------------G-----GAGTGTTATATCTATCATGTGT--ATTTGCGCATTTTGGTCGTGTGATTTGTGGCAAAGTGATGAGC-TATGATTCCATCCCCTTGTTGCAAACCTCACGCT--GAAGGTGACG----C--A-TAGCAGCAACAATT----G-AAAGATATTCGATTAAAC
droGri2	scaffold_15245:18189031-18189168 +	LASTZ	1	TAAAG--------------CATATTAA--------ATT---C----------------------CGAGTGTGGTAT------------------TTCTGTGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAG--CTTGATTCCATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGGCG----C--A-TCTAAGCAACAA---------------T--ATTAATAT

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CAAAAG-----------AACATAGTTG--------A----------------------------------CGGCGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATCTGC--GAAA----TACA-------------------C--AGTGGTAT
droSim1	CTAGAG-----------AACATTTTTG--------A----------------------------------TGGCGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATCTGA--GAAA----TACA-------------------C--AGTGATAT
droSec1	CTAGAG-----------AACATTTTTG--------A----------------------------------TGGCGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATCTGC--GAAA----TACA-------------------C--AGTGTTTT
droYak2	CTAAAT-----------AACATTTTTC--------A----------------------------------TGGCGT------------------TACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGACCTGC--GAAA----TACA-------------------C--AGGGATAT
droEre2	CAGAAA-----------AACATATTTG--------A----------------------------------TGACGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGACCTGC--GAAA----TACA-------------------C--AGTGTTAT
droEug1	TATAAA------------TCCGAATAA--------ATTCC--------------------------------TCGG------------------CAATGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGATGAGTTCCA--TA-----AACAAC--------------------CCGAATAG
droBia1	AAAAA------------AATGTCTTCA--------ACTCT--------------------------------TCAG------------------TACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAGTCCG-TTA------AACATCACCA-------------A--ACGAATAT
droTak1	TGAATA-----------AATA-------------------------------------------------TAGCAG------------------TTCAGGACATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAATCCG---AAA----TACAAC---------------------GCCAAAT
droEle1	CACACG-----------AGGATTT---------------T--------------------------------CCGG------------------TTCAGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAGACCTATGA------AACAAC--------------------ATTAGTTA
droRho1	CAGTG------------AACAAATTGG--------ATTGT--------------------------------CCGA------------------CTCTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAGTCCCAC--A-A---AACAACATTAAT-TA--------A--AGTGGTAA
droFic1	TAAAAT-----------AA-----TTG--------G-TGTAG----------------------G-----GGATATTAAA----------GT--ATCTGGGCGTTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGGATCCCAC--A-T---AACATCAAAT----G-AAATAAGC--TGAAGTGA
droKik1	CTTGG--------------CATTTG---------------------------------------------TGACTA--------TC--------AAGTGGGCATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGTATTTGAT--GATCCCCTTGTTGCAAACCTCACGCC--AAAGATGGAATCC--TATC----CACATC---------------------AAGGAAG
droAna3	TAATGG-----------AATCAGT-----AAGTGGA----------------------------------AAGGTG------------------TACTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATAGGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--CAAGGTGCTTTCCA--AC-----GGCAACA----------------T--ATCAGCAA
droBip1	CTAAGGGTTGAATAGTGAACAGG---------------------------------------------------TT---------------TTTTACTGGACATTTTGGGTGTGTGATTTGTGGCAATGTGATAGGTATTTGAT--AATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATATCCAT--A-T---AGCAACGTTATT-------------------AAG
dp4	CCGGAT-----------AAC---T--G-------------------------GGTATCCAGGAA------TCCAGA------------------CTGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAATCCCAC--A-CC--TACA---CTCTCATATAA---------TGATCAT
droPer1	AAGAAA-----------AAAGTTGTTA---T----ATC---CCGGATAACTGGGTATCCAGGAA------TCCAGA------------------CTGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAATCCCAC--A-CC--TACA---CTCTCAGATAA---------TGATCAT
droWil1	AAGTA--------------CATTT--GTTTAGTTAA----------------------------------AACGAA------------------TTGTGGGCATTTCGGGCGTGTGATTTGTAGCAAAGTGATATGTACTTGAT--AATCCCCTTGTTGCAAACCTCACGCCGGAAAGATGTCTCC----AAA----TACATC--------------------AG-----T
droVir3	TATGCA-------------CAGA--TC--------A-TGTCC----------------------AG----AGTGTGTAAT----------AT--ATCTGCGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC-TTGGATTCCATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGGCG----C--A-TTTAACCAGCAATA-----TAAA----G--ATTCATGT
droMoj3	TGGATA-----------AAGACTA---------------TTC----------------------G-----GAGTGTTATATCTATCATGTGT--ATTTGCGCATTTTGGTCGTGTGATTTGTGGCAAAGTGATGAGC-TATGATTCCATCCCCTTGTTGCAAACCTCACGCT--GAAGGTGACG----C--A-TAGCAGCAACAATT----G-AAAGATATTCGATTAAAC
droGri2	TAAAG--------------CATATTAA--------ATT---C----------------------CGAGTGTGGTAT------------------TTCTGTGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAG--CTTGATTCCATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGGCG----C--A-TCTAAGCAACAA---------------T--ATTAATAT

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

CTAGAG-----------AACATTTTTG--------A----------------------------------TGGCGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATCTGA--GAAA----TACA-------------------C--AGTGATAT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	1120.00	401.00	470.00	80.00	169.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	1116.00	211.00	575.00	75.00	255.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGAT..................................................................................................	22	1	758.00	21.00	452.00	132.00	153.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATA.................................................................................................	23	1	353.00	10.00	133.00	62.00	148.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGA...................................................................................................	21	1	158.00	11.00	106.00	25.00	16.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	105.00	7.00	65.00	17.00	16.00
................................................................................................................TGTGATTTGTAGCAAAGTGATA.................................................................................................	22	1	80.00	5.00	37.00	16.00	22.00
...............................................................................................................GTGTGATTTGTAGCAAAGTG....................................................................................................	20	1	72.00	3.00	52.00	16.00	1.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATT.................................................................................................	23	1	62.00	0.00	34.00	14.00	14.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	51.00	24.00	17.00	4.00	6.00
...............................................................................................................GTGTGATTTGTAGCAAAG......................................................................................................	18	1	46.00	0.00	31.00	9.00	6.00
...............................................................................................................GTGTGATTTGTAGCAAAGT.....................................................................................................	19	1	41.00	1.00	19.00	19.00	2.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGAC..................................................................................................	22	1	25.00	0.00	16.00	5.00	4.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGG...................................................................................................	21	1	22.00	0.00	18.00	3.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	19.00	2.00	13.00	3.00	1.00
................................................................................................................TGTGATTTGTAGCAAAGTGAT..................................................................................................	21	1	15.00	2.00	11.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--.........................................................	23	1	12.00	0.00	2.00	1.00	9.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--.........................................................	23	1	12.00	2.00	7.00	1.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGA............................................................	22	1	10.00	0.00	7.00	0.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTC................................................................	18	1	10.00	0.00	8.00	1.00	1.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATG.................................................................................................	23	1	8.00	0.00	3.00	1.00	4.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	8.00	8.00	0.00	0.00	0.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATC.................................................................................................	23	1	7.00	0.00	4.00	0.00	3.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGC............................................................	21	1	7.00	1.00	5.00	0.00	1.00
...............................................................................................................GTGTGATTTGTAGCAAGGTGA...................................................................................................	21	1	6.00	0.00	6.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACT.............................................................	21	1	6.00	0.00	4.00	1.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--.........................................................	23	1	5.00	0.00	3.00	2.00	0.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGT...................................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
..............................................................................................................TGTGTGATTTGTAGCAAAGTGAT..................................................................................................	23	1	5.00	0.00	4.00	0.00	1.00
.......................................................................................................................................................CCTTGTTGCAAACCTCACGCC--.........................................................	21	1	5.00	0.00	4.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGG............................................................	22	1	5.00	0.00	3.00	0.00	2.00
................................................................................................................TGTGATTTGTAGCAAAGTGATATG...............................................................................................	24	1	5.00	1.00	0.00	0.00	4.00
...............................................................................................................CTGTGATTTGTAGCAAAGTGATA.................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...............................................................................................................GTGTGATTTGTAGCAAGGTGAT..................................................................................................	22	1	4.00	0.00	3.00	0.00	1.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGAA..................................................................................................	22	1	4.00	1.00	1.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTACAAACCTCACG.............................................................	21	1	4.00	1.00	2.00	0.00	1.00
................................................................................................................TGTGATTTGTAGCAAAGTGA...................................................................................................	20	1	4.00	0.00	3.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--.........................................................	23	1	4.00	0.00	3.00	0.00	1.00
................................................................................................................TGTGATTTGTAGCAAAGTGATT.................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
...............................................................................................................TTGTGATTTGTAGCAAAGTGATA.................................................................................................	23	1	4.00	0.00	0.00	1.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAAAACTCACG.............................................................	21	1	4.00	4.00	0.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAT..............................................................	20	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCACACCTCACG.............................................................	21	1	3.00	3.00	0.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCACACCTCACGC............................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................................................................................TTGTGATTTGTAGCAAAGTGAT..................................................................................................	22	1	3.00	0.00	1.00	1.00	1.00
................................................................................................................TTTGATTTGTAGCAAAGTGATA.................................................................................................	22	1	3.00	0.00	2.00	0.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACAC............................................................	22	1	3.00	0.00	1.00	0.00	2.00
....................................................................................................................................................TCCCCTTGTTGCAAACCTCACG.............................................................	22	1	3.00	3.00	0.00	0.00	0.00
.....................................................................................................................................................CCCCTTGCTGCAAACCTCACG.............................................................	21	1	3.00	2.00	1.00	0.00	0.00
.......................................................................................................................................................CCTTGTTGCAAACCTCACGC............................................................	20	1	3.00	3.00	0.00	0.00	0.00

droSec1

CTAGAG-----------AACATTTTTG--------A----------------------------------TGGCGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATCTGC--GAAA----TACA-------------------C--AGTGTTTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	1676.00	65.00	675.00	936.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGAT..................................................................................................	22	1	1089.00	588.00	143.00	358.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	959.00	47.00	397.00	515.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGA...................................................................................................	21	1	691.00	317.00	90.00	284.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	566.00	101.00	114.00	351.00
...............................................................................................................GTGTGATTTGTAGCAAAGTG....................................................................................................	20	1	506.00	153.00	12.00	341.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATA.................................................................................................	23	1	120.00	66.00	26.00	28.00
................................................................................................................TGTGATTTGTAGCAAAGTGAT..................................................................................................	21	1	77.00	20.00	25.00	32.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	56.00	1.00	28.00	27.00
...............................................................................................................GTGTGATTTGTAGCAAAGT.....................................................................................................	19	1	53.00	20.00	4.00	29.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATT.................................................................................................	23	1	53.00	30.00	6.00	17.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	41.00	4.00	13.00	24.00
................................................................................................................TGTGATTTGTAGCAAAGTGATA.................................................................................................	22	1	34.00	13.00	15.00	6.00
..........................................................................GG------------------TACCGGGCATTTTGGGT........................................................................................................................	19	1	32.00	3.00	19.00	10.00
................................................................................................................TGTGATTTGTAGCAAAGTGA...................................................................................................	20	1	29.00	8.00	3.00	18.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	29.00	2.00	13.00	14.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGT...................................................................................................	21	1	27.00	15.00	0.00	12.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGC............................................................	21	1	21.00	1.00	6.00	14.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGT............................................................	21	1	10.00	2.00	4.00	4.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--.........................................................	23	1	9.00	2.00	0.00	7.00
...............................................................................................................GTGTGATTTGTAGCAAGGTGAT..................................................................................................	22	1	9.00	2.00	0.00	7.00
...............................................................................................................GTGTGATTTGTAGCAAAGAGAT..................................................................................................	22	1	9.00	9.00	0.00	0.00
..............................................................................................................TGTGTGATTTGTAGCAAAGTGAT..................................................................................................	23	1	8.00	2.00	2.00	4.00
......................................................................................................................................................CCCCTxTTGCAAACCTCACG.............................................................	19	1	8.00	0.00	6.00	2.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATG.................................................................................................	23	1	8.00	2.00	1.00	5.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATATG...............................................................................................	25	1	6.00	4.00	1.00	1.00
...............................................................................................................GTGTGATTTGTAGCAAGGTGA...................................................................................................	21	1	6.00	1.00	0.00	5.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTTACG.............................................................	21	1	6.00	0.00	4.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAATCTCACG.............................................................	21	1	5.00	0.00	3.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--.........................................................	23	1	4.00	1.00	1.00	2.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGGT..................................................................................................	22	1	4.00	2.00	1.00	1.00
...............................................................................................................GTGTGATTTGTAGCAAAGCGA...................................................................................................	21	1	4.00	2.00	1.00	1.00
...............................................................................................................GTGTGATTTGTAGCxAAGTGAT..................................................................................................	21	1	4.00	2.00	1.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCCCG.............................................................	21	1	4.00	1.00	3.00	0.00
..............................................................................................................TGTGTGATTTGTAGCAAAGTGA...................................................................................................	22	1	4.00	1.00	2.00	1.00
.....................................................................................................................................................CCTCTTGTTGCAAACCTCACG.............................................................	21	1	4.00	0.00	3.00	1.00
...............................................................................................................GTGTGATTTGTAGCAAAG......................................................................................................	18	1	4.00	0.00	0.00	4.00
...............................................................................................................GTGTGATTTGTAGCAAGGTGATA.................................................................................................	23	1	4.00	2.00	1.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGA............................................................	22	1	3.00	2.00	0.00	1.00
.....................................................................................................................................................CCCCTTGTTGAAAACCTCACG.............................................................	21	1	3.00	0.00	1.00	2.00
...............................................................................................................GTGTGGTTTGTAGCAAAGTGA...................................................................................................	21	1	3.00	1.00	2.00	0.00
...........................................................................G------------------TACCGGGCATTTTGGGT........................................................................................................................	18	1	3.00	0.00	3.00	0.00
..............................................................................................................TGTGTGATTTGTAGCAAAGTG....................................................................................................	21	1	3.00	1.00	0.00	2.00
...............................................................................................................GTGTGATTTTTAGCAAAGTGA...................................................................................................	21	1	3.00	1.00	1.00	1.00
.....................................................................................................................................................CCCCTTATTGCAAACCTCACGC............................................................	22	1	3.00	0.00	0.00	3.00
...............................................................................................................GTGTGATTTGTAGCAAGGTG....................................................................................................	20	1	3.00	0.00	0.00	3.00
...............................................................................................................GTGTGATTTGTAGCAAAGAG....................................................................................................	20	1	3.00	3.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACTC............................................................	22	1	3.00	0.00	2.00	1.00
...............................................................................................................GTGTGATTTGCAGCAAAGTGA...................................................................................................	21	1	3.00	1.00	1.00	1.00
.....................................................................................................................................................CCCCTTGTTGCxAACCTCACGC............................................................	21	1	3.00	0.00	2.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACTTCACGC............................................................	22	1	3.00	0.00	3.00	0.00
........................................................................................................................................................CTTGTTGCAAACCTCACG.............................................................	18	1	3.00	1.00	1.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAGCCTCACG.............................................................	21	1	3.00	0.00	0.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAAATCTCACGC............................................................	22	1	3.00	0.00	3.00	0.00
...............................................................................................................GTGTGATTTGTAGCAAAGTC....................................................................................................	20	1	3.00	0.00	0.00	3.00
...............................................................................................................GTGTGAxTTGTAGCAAAGTGA...................................................................................................	20	1	3.00	0.00	1.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACT.............................................................	21	1	3.00	0.00	1.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTTACGC............................................................	22	1	3.00	0.00	3.00	0.00
...............................................................................................................GTGTGACTTGTAGCAAAGTGA...................................................................................................	21	1	3.00	1.00	1.00	1.00

droYak2

CTAAAT-----------AACATTTTTC--------A----------------------------------TGGCGT------------------TACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGACCTGC--GAAA----TACA-------------------C--AGGGATAT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	988.00	342.00	189.00	40.00	312.00	105.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	882.00	232.00	155.00	24.00	253.00	218.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGAT..................................................................................................	22	1	238.00	23.00	11.00	92.00	27.00	85.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGA...................................................................................................	21	1	121.00	13.00	5.00	48.00	36.00	19.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	100.00	32.00	9.00	22.00	34.00	3.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATA.................................................................................................	23	1	39.00	5.00	0.00	5.00	1.00	28.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	36.00	1.00	6.00	4.00	8.00	17.00
...............................................................................................................GTGTGATTTGTAGCAAAGTG....................................................................................................	20	1	28.00	6.00	3.00	10.00	9.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--.........................................................	23	1	19.00	3.00	4.00	1.00	5.00	6.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCCCG.............................................................	21	1	19.00	0.00	2.00	0.00	15.00	2.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATT.................................................................................................	23	1	19.00	6.00	0.00	3.00	1.00	9.00
................................................................................................................TGTGATTTGTAGCAAAGTGAT..................................................................................................	21	1	16.00	0.00	2.00	6.00	7.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCCCGC............................................................	22	1	14.00	0.00	4.00	0.00	9.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAACCCTCACG.............................................................	21	1	13.00	3.00	0.00	0.00	10.00	0.00
.....................................................................................................................................................CCCCTTGTTGCCAACCTCACG.............................................................	21	1	13.00	5.00	2.00	0.00	6.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	13.00	8.00	1.00	0.00	4.00	0.00
.....................................................................................................................................................CCCCTTGTTGCCAACCTCACGC............................................................	22	1	11.00	2.00	5.00	0.00	4.00	0.00
...............................................................................................................GTGTGATTTGTAGCAAAGT.....................................................................................................	19	1	10.00	0.00	2.00	7.00	0.00	1.00
.....................................................................................................................................................CCCCTTGTTGCACACCTCACG.............................................................	21	1	10.00	4.00	1.00	0.00	5.00	0.00
.....................................................................................................................................................CCCCTTGTTGCACACCTCACGC............................................................	22	1	10.00	1.00	1.00	0.00	8.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGC............................................................	21	1	10.00	6.00	0.00	0.00	3.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--.........................................................	23	1	9.00	2.00	0.00	0.00	0.00	7.00
................................................................................................................TGTGATTTGTAGCAAAGTGATA.................................................................................................	22	1	9.00	3.00	1.00	4.00	0.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGA............................................................	22	1	6.00	2.00	2.00	0.00	1.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	6.00	1.00	1.00	0.00	1.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAACCCTCACGC............................................................	22	1	5.00	0.00	1.00	0.00	4.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACATCACG.............................................................	21	1	5.00	2.00	0.00	0.00	3.00	0.00
.....................................................................................................................................................CCCCTTGGTGCAAACCTCACGC............................................................	22	1	5.00	1.00	2.00	0.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACT.............................................................	21	1	5.00	0.00	0.00	1.00	4.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACA.............................................................	21	1	4.00	0.00	0.00	0.00	3.00	1.00
.....................................................................................................................................................CCCCTTGCTGCAAACCTCACGC............................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
.....................................................................................................................................................TCCCTTGTTGCAAACCTCACGC............................................................	22	1	4.00	1.00	1.00	1.00	1.00	0.00
.....................................................................................................................................................CCCCTTGGTGCAAACCTCACG.............................................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
.....................................................................................................................................................TCCCTTGTTGCAAACCTCACG.............................................................	21	1	3.00	1.00	0.00	0.00	2.00	0.00
.....................................................................................................................................................CCCCTTCTTGCAAACCTCACG.............................................................	21	1	3.00	1.00	0.00	0.00	2.00	0.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGG...................................................................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................................................................GT------------------TACTGGGCATTTTGGGT........................................................................................................................	19	1	3.00	2.00	0.00	1.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCATACCTCACG.............................................................	21	1	3.00	2.00	1.00	0.00	0.00	0.00
...............................................................................................................GTGTGCTTTGTAGCAAAGTGA...................................................................................................	21	1	3.00	1.00	0.00	1.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTTCAAACCTCACG.............................................................	21	1	3.00	1.00	0.00	0.00	2.00	0.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACG.............................................................	21	1	3.00	1.00	1.00	0.00	1.00	0.00
...............................................................................................................GTGTGATTTGTATCAAAGTGAT..................................................................................................	22	1	3.00	0.00	2.00	0.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACTC............................................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGCT..................................................................................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCGAACCTCACG.............................................................	21	1	3.00	0.00	1.00	0.00	2.00	0.00
........................................................................................................................................................CTTGTTGCAAACCTCACG.............................................................	18	1	3.00	2.00	0.00	1.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTCGCAAACCTCACG.............................................................	21	1	3.00	1.00	0.00	0.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCCCACG.............................................................	21	1	3.00	1.00	1.00	0.00	1.00	0.00

droEre2

CAGAAA-----------AACATATTTG--------A----------------------------------TGACGG------------------TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGACCTGC--GAAA----TACA-------------------C--AGTGTTAT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	1280.00	144.00	140.00	0.00	996.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	964.00	106.00	169.00	0.00	689.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGAT..................................................................................................	22	1	390.00	10.00	36.00	0.00	344.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGA...................................................................................................	21	1	248.00	4.00	27.00	0.00	217.00
...............................................................................................................GTGTGATTTGTAGCAAAGTG....................................................................................................	20	1	239.00	0.00	15.00	0.00	224.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	191.00	6.00	22.00	0.00	163.00
..............................................................................................................TGTGTGATTTGTAGCAAAGTGA...................................................................................................	22	1	52.00	0.00	2.00	0.00	50.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	36.00	2.00	4.00	0.00	30.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATA.................................................................................................	23	1	33.00	3.00	5.00	0.00	25.00
.....................................................................................................................................................CACCTTGTTGCAAACCTCACG.............................................................	21	1	23.00	2.00	0.00	0.00	21.00
................................................................................................................TGTGATTTGTAGCAAAGTGAT..................................................................................................	21	1	21.00	0.00	6.00	0.00	15.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	21.00	4.00	2.00	0.00	15.00
.....................................................................................................................................................CCCATTGTTGCAAACCTCACGC............................................................	22	1	19.00	0.00	0.00	0.00	19.00
.....................................................................................................................................................CACCTTGTTGCAAACCTCACGC............................................................	22	1	19.00	0.00	1.00	0.00	18.00
.....................................................................................................................................................CCCATTGTTGCAAACCTCACG.............................................................	21	1	18.00	0.00	0.00	0.00	18.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACG.............................................................	21	1	18.00	0.00	0.00	0.00	18.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACGC............................................................	22	1	16.00	0.00	0.00	0.00	16.00
...............................................................................................................GTGTGATTTGTAGCAAAGT.....................................................................................................	19	1	15.00	0.00	1.00	0.00	14.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGC............................................................	21	1	14.00	4.00	2.00	0.00	8.00
................................................................................................................TGTGATTTGTAGCAAAGTGA...................................................................................................	20	1	13.00	0.00	0.00	0.00	13.00
..............................................................................................................TGTGTGATTTGTAGCAAAGTG....................................................................................................	21	1	12.00	0.00	2.00	0.00	10.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATT.................................................................................................	23	1	12.00	1.00	2.00	0.00	9.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--.........................................................	23	1	10.00	1.00	3.00	0.00	6.00
..............................................................................................................TGTGTGATTTGTAGCAAAGTGAT..................................................................................................	23	1	9.00	0.00	2.00	0.00	7.00
.....................................................................................................................................................CCCCTTTTTGCAAACCTCACGC............................................................	22	1	9.00	0.00	0.00	0.00	9.00
.....................................................................................................................................................ACCCTTGTTGCAAACCTCACG.............................................................	21	1	8.00	0.00	1.00	0.00	7.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACTC............................................................	22	1	8.00	1.00	1.00	0.00	6.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACT.............................................................	21	1	8.00	0.00	0.00	0.00	8.00
.....................................................................................................................................................CCCCTTGTTGCAAACATCACG.............................................................	21	1	7.00	0.00	0.00	0.00	7.00
.....................................................................................................................................................CCCCTTTTTGCAAACCTCACG.............................................................	21	1	7.00	0.00	0.00	0.00	7.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	7.00	0.00	1.00	0.00	6.00
...............................................................................................................GTGTGATTTGTAGCAAAG......................................................................................................	18	1	7.00	0.00	1.00	0.00	6.00
...............................................................................................................GTGTTATTTGTAGCAAAGTGAT..................................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACGT............................................................	22	1	6.00	0.00	0.00	0.00	6.00
.....................................................................................................................................................TCCCTTGTTGCAAACCTCACGC............................................................	22	1	6.00	1.00	3.00	0.00	2.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGT............................................................	21	1	6.00	0.00	0.00	0.00	6.00
...............................................................................................................GTGTGATTTGTAGCAAAGTTAT..................................................................................................	22	1	6.00	1.00	0.00	0.00	5.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCCCG.............................................................	21	1	6.00	2.00	3.00	0.00	1.00
.....................................................................................................................................................CCCATTGTTGCAAACCTCACGT............................................................	22	1	6.00	0.00	0.00	0.00	6.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--.........................................................	23	1	5.00	2.00	1.00	0.00	2.00
.....................................................................................................................................................CCCCTTGTTTCAAACCTCACG.............................................................	21	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................................CCCCTTGTTGCAAACATCACGC............................................................	22	1	5.00	0.00	0.00	0.00	5.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGT...................................................................................................	21	1	4.00	0.00	1.00	0.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTAACG.............................................................	21	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTAACGC............................................................	22	1	4.00	0.00	0.00	0.00	4.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATG.................................................................................................	23	1	4.00	1.00	0.00	0.00	3.00
.....................................................................................................................................................CCCCTTGCTGCAAACCTCACG.............................................................	21	1	4.00	1.00	0.00	0.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAGACCTCACG.............................................................	21	1	4.00	1.00	1.00	0.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGA............................................................	22	1	3.00	0.00	2.00	0.00	1.00
.....................................................................................................................................................CCCCTTGTTGAAAACCTCACG.............................................................	21	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................GTGTGATTTGCAGCAAAGTGAT..................................................................................................	22	1	3.00	0.00	1.00	0.00	2.00
.....................................................................................................................................................CCCCTTATTGCAAACCTCACG.............................................................	21	1	3.00	1.00	0.00	0.00	2.00
...............................................................................................................GTGTGATTTGTAGCAAAGTTA...................................................................................................	21	1	3.00	0.00	1.00	0.00	2.00
.....................................................................................................................................................CCCCTTGCTGCAAACCTCACGC............................................................	22	1	3.00	3.00	0.00	0.00	0.00
......................................................................................................................................................CCCCTxTTGCAAACCTCACG.............................................................	19	1	3.00	0.00	0.00	0.00	3.00
................................................................................................................TGTGATTTGTAGCAAAGTGATA.................................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACCC............................................................	22	1	3.00	1.00	0.00	0.00	2.00
...............................................................................................................GTGTGATTTGTAGCAAGGTGA...................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTTT...............................................................	19	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................................CCCCTTGTTGCCAACCTCACG.............................................................	21	1	3.00	1.00	1.00	0.00	1.00
.....................................................................................................................................................CCCCTTGTTACAAACCTCACG.............................................................	21	1	3.00	0.00	0.00	0.00	3.00
..........................................................................GG------------------TACCGGGCATTTTGGGT........................................................................................................................	19	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................................CCCCTTGTTGCxAACCTCACG.............................................................	20	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................................CCCCTTGTTTCAAACCTCACGC............................................................	22	1	3.00	1.00	1.00	0.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAGCCTCACGC............................................................	22	1	3.00	1.00	0.00	0.00	2.00
.......................................................................................................................................................CCTTGTTGCAAACCTCACG.............................................................	19	1	3.00	0.00	0.00	0.00	3.00

droEug1

TATAAA------------TCCGAATAA--------ATTCC--------------------------------TCGG------------------CAATGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGATGAGTTCCA--TA-----AACAAC--------------------CCGAATAG

Size

Hit Count

Total Norm

droBia1

AAAAA------------AATGTCTTCA--------ACTCT--------------------------------TCAG------------------TACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAGTCCG-TTA------AACATCACCA-------------A--ACGAATAT

Size

Hit Count

Total Norm

droTak1

TGAATA-----------AATA-------------------------------------------------TAGCAG------------------TTCAGGACATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAATCCG---AAA----TACAAC---------------------GCCAAAT

Size

Hit Count

Total Norm

droEle1

CACACG-----------AGGATTT---------------T--------------------------------CCGG------------------TTCAGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAGACCTATGA------AACAAC--------------------ATTAGTTA

Size

Hit Count

Total Norm

droRho1

CAGTG------------AACAAATTGG--------ATTGT--------------------------------CCGA------------------CTCTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAGTCCCAC--A-A---AACAACATTAAT-TA--------A--AGTGGTAA

Size

Hit Count

Total Norm

droFic1

TAAAAT-----------AA-----TTG--------G-TGTAG----------------------G-----GGATATTAAA----------GT--ATCTGGGCGTTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGGATCCCAC--A-T---AACATCAAAT----G-AAATAAGC--TGAAGTGA

Size

Hit Count

Total Norm

droKik1

CTTGG--------------CATTTG---------------------------------------------TGACTA--------TC--------AAGTGGGCATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGTATTTGAT--GATCCCCTTGTTGCAAACCTCACGCC--AAAGATGGAATCC--TATC----CACATC---------------------AAGGAAG

Size

Hit Count

Total Norm

droAna3

TAATGG-----------AATCAGT-----AAGTGGA----------------------------------AAGGTG------------------TACTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATAGGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--CAAGGTGCTTTCCA--AC-----GGCAACA----------------T--ATCAGCAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	550.00	32.00	285.00	149.00	84.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGA...................................................................................................	21	1	488.00	355.00	115.00	15.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	283.00	14.00	100.00	105.00	64.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGAT..................................................................................................	22	1	235.00	100.00	119.00	14.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	156.00	33.00	61.00	51.00	11.00
...............................................................................................................GTGTGATTTGTGGCAAAGTG....................................................................................................	20	1	144.00	74.00	61.00	9.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGT.....................................................................................................	19	1	66.00	48.00	16.00	1.00	1.00
..........................................................................TG------------------TACTGGACATTTTGGGT........................................................................................................................	19	1	57.00	7.00	44.00	3.00	3.00
................................................................................................................TGTGATTTGTGGCAAAGTGA...................................................................................................	20	1	38.00	14.00	18.00	6.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATT.................................................................................................	23	1	35.00	16.00	19.00	0.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGAT..................................................................................................	21	1	34.00	10.00	20.00	4.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATA.................................................................................................	23	1	25.00	5.00	20.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	19.00	3.00	8.00	5.00	3.00
...............................................................................................................GTGTGATTTGTGGCAAAG......................................................................................................	18	1	8.00	2.00	4.00	2.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATAGGT..............................................................................................	26	1	8.00	8.00	0.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGC...................................................................................................	21	1	8.00	6.00	1.00	1.00	0.00
.....................................................................................................................................................CCCATTGTTGCAAACCTCACG.............................................................	21	1	6.00	0.00	5.00	1.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	6.00	0.00	2.00	4.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--.........................................................	23	1	6.00	0.00	1.00	0.00	5.00
................................................................................................................TGTGATTTGTGGCAAAGTGATA.................................................................................................	22	1	6.00	2.00	3.00	0.00	1.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGT...................................................................................................	21	1	5.00	4.00	1.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACTC............................................................	22	1	5.00	0.00	1.00	3.00	1.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATC.................................................................................................	23	1	5.00	1.00	4.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACT.............................................................	21	1	5.00	0.00	5.00	0.00	0.00
...............................................................................................................GTGTGATTTGTTGCAAAGTGA...................................................................................................	21	1	5.00	2.00	2.00	1.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTG....................................................................................................	19	1	5.00	1.00	4.00	0.00	0.00
.....................................................................................................................................................ACCCTTGTTGCAAACCTCACG.............................................................	21	1	5.00	0.00	2.00	3.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGC............................................................	21	1	5.00	0.00	0.00	4.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--.........................................................	23	1	5.00	0.00	3.00	2.00	0.00
...............................................................................................................GTGTGATTTGTGACAAAGTGA...................................................................................................	21	1	4.00	4.00	0.00	0.00	0.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACG.............................................................	21	1	4.00	0.00	3.00	1.00	0.00
..............................................................................................................TGTGTGATTTGTGGCAAAGTG....................................................................................................	21	1	4.00	0.00	2.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	4.00	1.00	2.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCCCG.............................................................	21	1	4.00	0.00	0.00	4.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGT............................................................	21	1	4.00	1.00	0.00	3.00	0.00
.....................................................................................................................................................TCCCTTGTTGCAAACCTCACG.............................................................	21	1	3.00	0.00	1.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCCCACG.............................................................	21	1	3.00	0.00	0.00	3.00	0.00
.....................................................................................................................................................CACCTTGTTGCAAACCTCACGC............................................................	22	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................GTGTGATTTGCGGCAAAGTG....................................................................................................	20	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................GTGTGATTTGTGGCAGAGTGA...................................................................................................	21	1	3.00	2.00	1.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGTCAAAGTGA...................................................................................................	21	1	3.00	1.00	1.00	1.00	0.00
.....................................................................................................................................................CCCCTGGTTGCAAACCTCACG.............................................................	21	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................GTTTGATTTGTGGCAAAGTG....................................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTTCAAACCTCACG.............................................................	21	1	3.00	0.00	1.00	0.00	2.00
................................................................................................................TGTGATTTGTGGCAAAGTGATT.................................................................................................	22	1	3.00	2.00	1.00	0.00	0.00
.....................................................................................................................................................CCGCTTGTTGCAAACCTCACG.............................................................	21	1	3.00	0.00	2.00	0.00	1.00
...............................................................................................................GCGTGATTTGTGGCAAAGTGA...................................................................................................	21	1	3.00	2.00	0.00	1.00	0.00
.....................................................................................................................................................CACCTTGTTGCAAACCTCACG.............................................................	21	1	3.00	0.00	2.00	1.00	0.00

droBip1

CTAAGGGTTGAATAGTGAACAGG---------------------------------------------------TT---------------TTTTACTGGACATTTTGGGTGTGTGATTTGTGGCAATGTGATAGGTATTTGAT--AATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATATCCAT--A-T---AGCAACGTTATT-------------------AAG

Size

Hit Count

Total Norm

dp4

CCGGAT-----------AAC---T--G-------------------------GGTATCCAGGAA------TCCAGA------------------CTGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAATCCCAC--A-CC--TACA---CTCTCATATAA---------TGATCAT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	498.00	41.00	290.00	166.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	456.00	33.00	199.00	221.00	3.00
...............................................................................................................GTGTGATTTGTGGCAAAGTG....................................................................................................	20	1	142.00	103.00	3.00	35.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	116.00	31.00	37.00	48.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGAT..................................................................................................	22	1	88.00	42.00	17.00	28.00	1.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGA...................................................................................................	21	1	66.00	42.00	6.00	18.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGAT..................................................................................................	21	1	42.00	15.00	5.00	22.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGT.....................................................................................................	19	1	30.00	23.00	1.00	6.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGA...................................................................................................	20	1	26.00	10.00	0.00	16.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTT....................................................................................................	20	1	23.00	19.00	0.00	4.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGT...................................................................................................	21	1	19.00	16.00	0.00	3.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGATA.................................................................................................	22	1	14.00	4.00	3.00	7.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGT...................................................................................................	20	1	10.00	7.00	0.00	3.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	9.00	1.00	5.00	3.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	9.00	1.00	6.00	2.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGC............................................................	21	1	8.00	1.00	2.00	5.00	0.00
..............................................................................................................TGTGTGATTTGTGGCAAAGTGA...................................................................................................	22	1	6.00	4.00	0.00	2.00	0.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACG.............................................................	21	1	6.00	0.00	2.00	4.00	0.00
....................................................................................................................................................TCCCCTTGTTGCAAACCTCACG.............................................................	22	1	6.00	0.00	4.00	2.00	0.00
..........................................................................GA------------------CTGTGGACATTTTGGGT........................................................................................................................	19	1	5.00	1.00	4.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTTT...................................................................................................	21	1	5.00	2.00	0.00	3.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTTTT..................................................................................................	22	1	4.00	2.00	0.00	2.00	0.00
..............................................................................................................TGTGTGATTTGTGGCAAAGTG....................................................................................................	21	1	4.00	0.00	0.00	4.00	0.00
.....................................................................................................................................................CCCCTTGTTGCCAACCTCACGC............................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACATCACG.............................................................	21	1	4.00	0.00	2.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCCAACCTCACG.............................................................	21	1	4.00	0.00	3.00	1.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATA.................................................................................................	23	1	3.00	2.00	0.00	1.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAG......................................................................................................	18	1	3.00	0.00	1.00	2.00	0.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACGC............................................................	22	1	3.00	0.00	1.00	2.00	0.00
..............................................................................................................TGTGTGATTTGTGGCAAAGTGAT..................................................................................................	23	1	3.00	0.00	2.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAATCTCACGC............................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCATACCTCACG.............................................................	21	1	3.00	0.00	3.00	0.00	0.00
........................................................................................................................................................CTTGTTGCAAACCTCACGC............................................................	19	1	3.00	0.00	3.00	0.00	0.00
....................................................................................................................................................CCCCCTTGTTGCAAACCTCACG.............................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................................CCCCTTGGTGCAAACCTCACGC............................................................	22	1	3.00	0.00	2.00	1.00	0.00
.....................................................................................................................................................CCCCTTGCTGCAAACCTCACGC............................................................	22	1	3.00	0.00	1.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	3.00	1.00	1.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCGAACCTCACG.............................................................	21	1	3.00	0.00	3.00	0.00	0.00

droPer1

AAGAAA-----------AAAGTTGTTA---T----ATC---CCGGATAACTGGGTATCCAGGAA------TCCAGA------------------CTGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAATCCCAC--A-CC--TACA---CTCTCAGATAA---------TGATCAT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	589.00	10.00	98.00	215.00	245.00	21.00
...............................................................................................................GTGTGATTTGTGGCAAAGTG....................................................................................................	20	1	480.00	432.00	2.00	17.00	27.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	465.00	4.00	33.00	137.00	267.00	24.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGA...................................................................................................	21	1	331.00	285.00	2.00	13.00	31.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGAT..................................................................................................	22	1	238.00	179.00	6.00	17.00	36.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTT....................................................................................................	20	1	187.00	156.00	0.00	9.00	18.00	4.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGT...................................................................................................	21	1	143.00	132.00	0.00	5.00	6.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGT.....................................................................................................	19	1	141.00	121.00	1.00	5.00	14.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGAT..................................................................................................	21	1	119.00	62.00	1.00	11.00	45.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	105.00	4.00	6.00	39.00	56.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGA...................................................................................................	20	1	79.00	43.00	0.00	9.00	27.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	27.00	1.00	4.00	9.00	12.00	1.00
...............................................................................................................GTGTGATTTGTGGCAAAGTTT...................................................................................................	21	1	26.00	22.00	0.00	2.00	2.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGTT..................................................................................................	22	1	17.00	15.00	0.00	0.00	2.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGT...................................................................................................	20	1	17.00	10.00	0.00	2.00	5.00	0.00
..............................................................................................................TGTGTGATTTGTGGCAAAGTGA...................................................................................................	22	1	15.00	6.00	1.00	2.00	6.00	0.00
..............................................................................................................TGTGTGATTTGTGGCAAAGTGAT..................................................................................................	23	1	15.00	10.00	2.00	1.00	2.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATA.................................................................................................	23	1	14.00	9.00	2.00	1.00	0.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	13.00	2.00	0.00	5.00	6.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTG....................................................................................................	19	1	11.00	7.00	0.00	1.00	3.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAG......................................................................................................	18	1	10.00	5.00	1.00	3.00	1.00	0.00
..........................................................................GA------------------CTGTGGACATTTTGGGT........................................................................................................................	19	1	10.00	9.00	0.00	1.00	0.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGATA.................................................................................................	22	1	10.00	3.00	1.00	4.00	2.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGC............................................................	21	1	9.00	0.00	2.00	1.00	6.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTC....................................................................................................	20	1	7.00	6.00	0.00	1.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGAA..................................................................................................	22	1	6.00	5.00	0.00	0.00	1.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGTC..................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATT.................................................................................................	23	1	6.00	5.00	0.00	0.00	1.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	5.00	0.00	1.00	1.00	3.00	0.00
....................................................................................................................................................TCCCCTTGTTGCAAACCTCACG.............................................................	22	1	5.00	0.00	1.00	2.00	2.00	0.00
.....................................................................................................................................................CACCTTGTTGCAAACCTCACG.............................................................	21	1	5.00	0.00	0.00	3.00	2.00	0.00
.....................................................................................................................................................TCCCTTGTTGCAAACCTCACGC............................................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
.....................................................................................................................................................CCCCTTGGTGCAAACCTCACGC............................................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
.....................................................................................................................................................CCCCTTGGTGCAAACCTCACG.............................................................	21	1	4.00	0.00	1.00	0.00	3.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--.........................................................	23	1	4.00	0.00	1.00	2.00	1.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATATGC..............................................................................................	26	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATTC................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTTTT..................................................................................................	22	1	3.00	2.00	0.00	0.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCATACCTCACGC............................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACATCACG.............................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.....................................................................................................................................................CACCTTGTTGCAAACCTCACGC............................................................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCACACCTCACGC............................................................	22	1	3.00	0.00	1.00	0.00	1.00	1.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATATG...............................................................................................	25	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGA...................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCATACCTCACG.............................................................	21	1	3.00	0.00	1.00	0.00	2.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTTA...................................................................................................	21	1	3.00	2.00	0.00	0.00	1.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTA....................................................................................................	20	1	3.00	1.00	0.00	0.00	2.00	0.00
.....................................................................................................................................................CCCCTGGGTGCAAACCTCACGC............................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACG.............................................................	21	1	3.00	0.00	1.00	0.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAACCCTCACG.............................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGTA..................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACTC............................................................	22	1	3.00	0.00	0.00	2.00	1.00	0.00
.....................................................................................................................................................CCCCTCGTTGCAAACCTCACG.............................................................	21	1	3.00	0.00	0.00	1.00	2.00	0.00

droWil1

AAGTA--------------CATTT--GTTTAGTTAA----------------------------------AACGAA------------------TTGTGGGCATTTCGGGCGTGTGATTTGTAGCAAAGTGATATGTACTTGAT--AATCCCCTTGTTGCAAACCTCACGCCGGAAAGATGTCTCC----AAA----TACATC--------------------AG-----T	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	1624.00	23.00	712.00	693.00	196.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	1583.00	41.00	646.00	403.00	493.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGAT..................................................................................................	22	1	757.00	55.00	301.00	172.00	229.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGA...................................................................................................	21	1	226.00	32.00	116.00	43.00	35.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	211.00	14.00	97.00	98.00	2.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATA.................................................................................................	23	1	81.00	2.00	22.00	4.00	53.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATT.................................................................................................	23	1	62.00	6.00	19.00	5.00	32.00
...............................................................................................................GTGTGATTTGTAGCAAAGTG....................................................................................................	20	1	56.00	6.00	19.00	29.00	2.00
................................................................................................................TGTGATTTGTAGCAAAGTGATA.................................................................................................	22	1	51.00	1.00	36.00	2.00	12.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	40.00	2.00	10.00	19.00	9.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT...........................................................	23	1	34.00	0.00	13.00	12.00	9.00
................................................................................................................TGTGATTTGTAGCAAAGTGAT..................................................................................................	21	1	27.00	3.00	12.00	9.00	3.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGC............................................................	21	1	25.00	1.00	14.00	8.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	24.00	6.00	8.00	9.00	1.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGATC.................................................................................................	23	1	23.00	3.00	0.00	3.00	17.00
...............................................................................................................GTGTGATTTGTAGCAAAGT.....................................................................................................	19	1	21.00	13.00	4.00	0.00	4.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC...........................................................	23	1	19.00	0.00	4.00	0.00	15.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	17.00	0.00	10.00	7.00	0.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGAC..................................................................................................	22	1	12.00	1.00	0.00	1.00	10.00
.....................................................................................................................................................CCCATTGTTGCAAACCTCACG.............................................................	21	1	10.00	0.00	6.00	4.00	0.00
........................................................................CGAA------------------TTGTGGGCATTTCGGGC........................................................................................................................	21	1	10.00	0.00	4.00	2.00	4.00
..........................................................................AA------------------TTGTGGGCATTTCGGGC........................................................................................................................	19	1	9.00	0.00	3.00	3.00	3.00
.....................................................................................................................................................CACCTTGTTGCAAACCTCACG.............................................................	21	1	9.00	0.00	6.00	3.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA...........................................................	23	1	8.00	0.00	7.00	0.00	1.00
...............................................................................................................GTGTGATTTGTAGCAAAG......................................................................................................	18	1	7.00	0.00	0.00	0.00	7.00
................................................................................................................TGTGATTTGTAGCAAAGTGA...................................................................................................	20	1	7.00	2.00	2.00	2.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAAACTCACGC............................................................	22	1	7.00	0.00	1.00	6.00	0.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGAA..................................................................................................	22	1	6.00	1.00	3.00	0.00	2.00
...............................................................................................................GTGTGATTTGTAGCAAAGTGG...................................................................................................	21	1	6.00	0.00	0.00	0.00	6.00
...........................................................................A------------------TTGTGGGCATTTCGGGC........................................................................................................................	18	1	6.00	0.00	2.00	2.00	2.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGT............................................................	21	1	6.00	1.00	3.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCCCG.............................................................	21	1	5.00	0.00	2.00	3.00	0.00
.........................................................................GAA------------------TTGTGGGCATTTCGGGC........................................................................................................................	20	1	5.00	0.00	0.00	2.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAAACCCCACGC............................................................	22	1	5.00	0.00	2.00	2.00	1.00
.................................................................................................................GTGATTTGTAGCAAAGTGAT..................................................................................................	20	1	5.00	0.00	1.00	0.00	4.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACG.............................................................	21	1	4.00	0.00	0.00	4.00	0.00
.....................................................................................................................................................CCCATTGTTGCAAACCTCACGC............................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................................CCCCTTGCTGCAAACCTCACG.............................................................	21	1	4.00	0.00	2.00	1.00	1.00
...............................................................................................................GTGTGATTTGTAGCAAGGTGAT..................................................................................................	22	1	4.00	0.00	0.00	3.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAAACTCACG.............................................................	21	1	4.00	0.00	0.00	4.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAAGC............................................................	22	1	4.00	0.00	1.00	3.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGA...................................................................................................	21	1	3.00	1.00	2.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTCCAAACCTCACG.............................................................	21	1	3.00	0.00	2.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAGACCTCACGC............................................................	22	1	3.00	0.00	0.00	2.00	1.00
.......................................................................ACGAA------------------TTGTGGGCATTTCGGGC........................................................................................................................	22	1	3.00	0.00	0.00	2.00	1.00
.....................................................................................................................................................CACCTTGTTGCAAACCTCACGC............................................................	22	1	3.00	0.00	1.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGAAAACCTCACG.............................................................	21	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................................................................CCTTGTTGCAAACCTCACG.............................................................	19	1	3.00	0.00	2.00	1.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGCT...........................................................	22	1	3.00	0.00	1.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGAAAACCTCACGC............................................................	22	1	3.00	0.00	0.00	3.00	0.00
......................................................................................................................................................CCCCTxTTGCAAACCTCACG.............................................................	19	1	3.00	1.00	1.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACT.............................................................	21	1	3.00	0.00	2.00	1.00	0.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACGC............................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG...........................................................	23	1	3.00	0.00	0.00	3.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGA............................................................	22	1	3.00	0.00	2.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTCGCAAACCTCACGC............................................................	22	1	3.00	0.00	2.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCAA..........................................................	24	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................GTGTGATTTGTAGCAAAGAGAT..................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTG....................................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................................CCCCTTTTTGCAAACCTCACGC............................................................	22	1	3.00	0.00	2.00	1.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACC.............................................................	21	1	3.00	0.00	1.00	2.00	0.00

droVir3

TATGCA-------------CAGA--TC--------A-TGTCC----------------------AG----AGTGTGTAAT----------AT--ATCTGCGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC-TTGGATTCCATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGGCG----C--A-TTTAACCAGCAATA-----TAAA----G--ATTCATGT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	427.00	57.00	202.00	51.00	29.00	88.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	415.00	34.00	125.00	49.00	46.00	161.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGA...................................................................................................	21	1	77.00	46.00	27.00	3.00	0.00	1.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGAT..................................................................................................	22	1	75.00	50.00	13.00	7.00	0.00	5.00
...........................................................................................T--ATCTGCGCATTTTGGGC........................................................................................................................	18	1	72.00	0.00	1.00	0.00	9.00	62.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATC.................................................................................................	23	1	52.00	29.00	3.00	0.00	5.00	15.00
...............................................................................................................GTGTGATTTGTGGCAAAGTG....................................................................................................	20	1	43.00	29.00	13.00	0.00	0.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	42.00	22.00	8.00	10.00	0.00	2.00
..........................................................................................AT--ATCTGCGCATTTTGGGC........................................................................................................................	19	1	40.00	1.00	4.00	1.00	4.00	30.00
................................................................................................................TGTGATTTGTGGCAAAGTGATG.................................................................................................	22	1	38.00	17.00	9.00	12.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	21.00	5.00	6.00	1.00	1.00	8.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--.........................................................	23	1	18.00	2.00	3.00	4.00	4.00	5.00
................................................................................................................TGTGATTTGTGGCAAAGTGAT..................................................................................................	21	1	13.00	9.00	3.00	1.00	0.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGA...................................................................................................	20	1	12.00	4.00	8.00	0.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATA.................................................................................................	23	1	10.00	5.00	0.00	3.00	2.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATT.................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGT.....................................................................................................	19	1	6.00	1.00	1.00	2.00	0.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--.........................................................	23	1	6.00	0.00	0.00	1.00	3.00	2.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	5.00	0.00	1.00	3.00	0.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--.........................................................	23	1	5.00	0.00	2.00	2.00	1.00	0.00
....................................................................................................................................................TCCCCTTGTTGCAAACCTCACG.............................................................	22	1	4.00	1.00	1.00	2.00	0.00	0.00
.....................................................................................................................................................TCCCTTGTTGCAAACCTCACG.............................................................	21	1	4.00	0.00	4.00	0.00	0.00	0.00
...............................................................................T----------AT--ATCTGCGCATTTTGGGC........................................................................................................................	20	1	4.00	0.00	0.00	0.00	1.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCCCG.............................................................	21	1	4.00	1.00	2.00	1.00	0.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--.........................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	3.00	1.00	1.00	1.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCATACCTCACG.............................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCCCACG.............................................................	21	1	3.00	0.00	0.00	3.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGT...................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00

droMoj3

TGGATA-----------AAGACTA---------------TTC----------------------G-----GAGTGTTATATCTATCATGTGT--ATTTGCGCATTTTGGTCGTGTGATTTGTGGCAAAGTGATGAGC-TATGATTCCATCCCCTTGTTGCAAACCTCACGCT--GAAGGTGACG----C--A-TAGCAGCAACAATT----G-AAAGATATTCGATTAAAC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	719.00	21.00	241.00	228.00	229.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	667.00	28.00	255.00	205.00	179.00
................................................................................................................TGTGATTTGTGGCAAAGTGATG.................................................................................................	22	1	417.00	204.00	96.00	44.00	73.00
................................................................................................................TGTGATTTGTGGCAAAGTGAT..................................................................................................	21	1	253.00	100.00	95.00	41.00	17.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGAT..................................................................................................	22	1	169.00	105.00	31.00	12.00	21.00
................................................................................................................TGTGATTTGTGGCAAAGTGA...................................................................................................	20	1	162.00	63.00	61.00	33.00	5.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGA...................................................................................................	21	1	84.00	52.00	11.00	8.00	13.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	74.00	13.00	32.00	16.00	13.00
....................................................................................................................................................TCCCCTTGTTGCAAACCTCACG.............................................................	22	1	27.00	0.00	10.00	3.00	14.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATT.................................................................................................	23	1	26.00	21.00	0.00	1.00	4.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	24.00	5.00	10.00	8.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--.........................................................	23	1	21.00	2.00	5.00	5.00	9.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATC.................................................................................................	23	1	19.00	16.00	3.00	0.00	0.00
...............................................................................................................GTGTGATTTGTGGCAAAGTG....................................................................................................	20	1	19.00	9.00	7.00	2.00	1.00
................................................................................................................TGTGATTTGTGGCAAAGTG....................................................................................................	19	1	14.00	5.00	3.00	5.00	1.00
.....................................................................................................................................................CCCCTTGTTGCCAACCTCACG.............................................................	21	1	13.00	0.00	0.00	9.00	4.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCCCG.............................................................	21	1	9.00	0.00	2.00	5.00	2.00
.....................................................................................................................................................CCCCTTGTTGCACACCTCACGC............................................................	22	1	9.00	0.00	1.00	6.00	2.00
................................................................................................................TGTGATTTGTGGCAAAGTGATC.................................................................................................	22	1	8.00	8.00	0.00	0.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGATGT................................................................................................	23	1	8.00	2.00	3.00	2.00	1.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACGC............................................................	21	1	8.00	0.00	3.00	3.00	2.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATA.................................................................................................	23	1	8.00	5.00	0.00	0.00	3.00
..........................................................................................GT--ATTTGCGCATTTTGGTC........................................................................................................................	19	1	7.00	1.00	0.00	0.00	6.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATGAGC-.............................................................................................	26	1	6.00	6.00	0.00	0.00	0.00
.....................................................................................................................................................CCCCTTGTTGCCAACCTCACGC............................................................	22	1	6.00	0.00	0.00	5.00	1.00
................................................................................................................TGTGATTTGTGGCAAAGTGATT.................................................................................................	22	1	6.00	3.00	1.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCATACCTCACGC............................................................	22	1	5.00	0.00	2.00	2.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAACCCTCACGC............................................................	22	1	5.00	0.00	4.00	1.00	0.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	5.00	0.00	3.00	1.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--T........................................................	24	1	4.00	0.00	1.00	2.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	4.00	0.00	1.00	1.00	2.00
.....................................................................................................................................................CCCCTTGTTGCACACCTCACG.............................................................	21	1	4.00	0.00	2.00	1.00	1.00
.....................................................................................................................................................TCCCTTGTTGCAAACCTCACG.............................................................	21	1	4.00	0.00	2.00	1.00	1.00
.....................................................................................................................................................CCCCTCGTTGCAAACCTCACGC............................................................	22	1	3.00	0.00	0.00	1.00	2.00
....................................................................................................................................................TCCCCTTGTTGCAAACCTCAC..............................................................	21	1	3.00	0.00	0.00	1.00	2.00
................................................................................................................TGTGATTTGTGGCAAAGTGATAA................................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
................................................................................................................TGTGATTTGTGGCGAAGTGA...................................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACGC............................................................	22	1	3.00	0.00	3.00	0.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGATA.................................................................................................	22	1	3.00	2.00	0.00	0.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCGCGC............................................................	22	1	3.00	0.00	1.00	2.00	0.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGA............................................................	22	1	3.00	1.00	0.00	0.00	2.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATAAA...............................................................................................	25	1	3.00	2.00	0.00	0.00	1.00
................................................................................................................TGTGATTTGTGGCAAAGTGAA..................................................................................................	21	1	3.00	2.00	0.00	0.00	1.00
...............................................................................................................GTGTGATTTGTGGCAAAGT.....................................................................................................	19	1	3.00	1.00	1.00	0.00	1.00
................................................................................................................TGTGATTTGTGGCAAATTGATG.................................................................................................	22	1	3.00	1.00	2.00	0.00	0.00
................................................................................................................TGTGATTTGTGGCAAAGTGATGA................................................................................................	23	1	3.00	0.00	1.00	1.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGTC--.........................................................	23	1	3.00	1.00	1.00	1.00	0.00
.....................................................................................................................................................CCACTTGTTGCAAACCTCACG.............................................................	21	1	3.00	0.00	2.00	0.00	1.00
................................................................................................................TGTGATTTGTGGCACAGTGATG.................................................................................................	22	1	3.00	0.00	0.00	2.00	1.00
.....................................................................................................................................................CCCCTCGTTGCAAACCTCACG.............................................................	21	1	3.00	0.00	0.00	2.00	1.00
.....................................................................................................................................................ACCCTTGTTGCAAACCTCACGC............................................................	22	1	3.00	0.00	2.00	0.00	1.00

droGri2

TAAAG--------------CATATTAA--------ATT---C----------------------CGAGTGTGGTAT------------------TTCTGTGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAG--CTTGATTCCATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGGCG----C--A-TCTAAGCAACAA---------------T--ATTAATAT	Size	Hit Count	Total Norm	V109 Male body
...............................................................................................................GTGTGATTTGTGGCAAAGTGAT..................................................................................................	22	1	22.00	22.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACG.............................................................	21	1	21.00	21.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGA...................................................................................................	21	1	10.00	10.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGT............................................................	22	1	9.00	9.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCACGC............................................................	22	1	7.00	7.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATT.................................................................................................	23	1	3.00	3.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCAC..............................................................	20	1	2.00	2.00
................................................................................................................TGTGATTTGTGGCAAAGTGATG.................................................................................................	22	1	2.00	2.00
................................................................................................................TGTGATTTGTGGCAAAGTGAT..................................................................................................	21	1	1.00	1.00
................................................................................................................TGTGATTTGTGGCAAAGTGA...................................................................................................	20	1	1.00	1.00
...............................................................................................................GTGCGATTTGTGGCAAAGTGAT..................................................................................................	22	1	1.00	1.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATTT................................................................................................	24	1	1.00	1.00
...............................................................................................................GGGTGATTTGTGGCAAAGTGAT..................................................................................................	22	1	1.00	1.00
.....................................................................................................................................................CCCCTTGTTGCAAACCTCA...............................................................	19	1	1.00	1.00
......................................................................................................................................................CCCTTGTTGCAAACCTCACG.............................................................	20	1	1.00	1.00
...............................................................................................................GTGTGATTTGTGGCAAAGTGATAAA--.............................................................................................	25	1	1.00	1.00
...............................................................................................................TTGTGATTTGTGGCAAAGTGAT..................................................................................................	22	1	1.00	1.00
...............................................................................................................GTGTGATTTGTGGCAAAGTG....................................................................................................	20	1	1.00	1.00
.....................................................................................................................................................CCCCTTGTTGCxAACCTCACG.............................................................	20	1	1.00	1.00

Generated: 04/20/2012 at 05:07:46 EDT

dme-mir-988

chr2R:8046377-8046475 -

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup