Possible Orthologs for dme-mir-988

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R_random:2089209-2089337 -	93.11	CAAAAGAACATAGTTGACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACACAGTGGTAT CTAGAGAACATTTTTGATGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGAGAAATACACAGTGATAT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ............................................................................CCCCTTGTTGCAAACCTCACG................................ 21 1 1120.00 401.00 470.00 80.00 169.00 ............................................................................CCCCTTGTTGCAAACCTCACGC............................... 22 1 1116.00 211.00 575.00 75.00 255.00 ........................................GTGTGATTTGTAGCAAAGTGAT................................................................... 22 1 758.00 21.00 452.00 132.00 153.00 ........................................GTGTGATTTGTAGCAAAGTGATA.................................................................. 23 1 353.00 10.00 133.00 62.00 148.00 ........................................GTGTGATTTGTAGCAAAGTGA.................................................................... 21 1 158.00 11.00 106.00 25.00 16.00 ............................................................................CCCCTTGTTGCAAACCTCAC................................. 20 1 105.00 7.00 65.00 17.00 16.00 .........................................TGTGATTTGTAGCAAAGTGATA.................................................................. 22 1 80.00 5.00 37.00 16.00 22.00 ........................................GTGTGATTTGTAGCAAAGTG..................................................................... 20 1 72.00 3.00 52.00 16.00 1.00 ........................................GTGTGATTTGTAGCAAAGTGATT.................................................................. 23 1 62.00 0.00 34.00 14.00 14.00 ............................................................................CCCCTTGTTGCAAACCTCACGT............................... 22 1 51.00 24.00 17.00 4.00 6.00 ........................................GTGTGATTTGTAGCAAAG....................................................................... 18 1 46.00 0.00 31.00 9.00 6.00 ........................................GTGTGATTTGTAGCAAAGT...................................................................... 19 1 41.00 1.00 19.00 19.00 2.00 ........................................GTGTGATTTGTAGCAAAGTGAC................................................................... 22 1 25.00 0.00 16.00 5.00 4.00 ........................................GTGTGATTTGTAGCAAAGTGG.................................................................... 21 1 22.00 0.00 18.00 3.00 1.00 ............................................................................CCCCTTGTTGCAAACCTCA.................................. 19 1 19.00 2.00 13.00 3.00 1.00 .........................................TGTGATTTGTAGCAAAGTGAT................................................................... 21 1 15.00 2.00 11.00 2.00 0.00 ............................................................................CCCCTTGTTGCAAACCTCACGCC.............................. 23 1 12.00 0.00 2.00 1.00 9.00 ............................................................................CCCCTTGTTGCAAACCTCACGCT.............................. 23 1 12.00 2.00 7.00 1.00 2.00 ............................................................................CCCCTTGTTGCAAACCTCACGA............................... 22 1 10.00 0.00 7.00 0.00 3.00 ............................................................................CCCCTTGTTGCAAACCTC................................... 18 1 10.00 0.00 8.00 1.00 1.00 ........................................GTGTGATTTGTAGCAAAGTGATG.................................................................. 23 1 8.00 0.00 3.00 1.00 4.00 .............................................................................CCCTTGTTGCAAACCTCACG................................ 20 1 8.00 8.00 0.00 0.00 0.00 ........................................GTGTGATTTGTAGCAAAGTGATC.................................................................. 23 1 7.00 0.00 4.00 0.00 3.00 .............................................................................CCCTTGTTGCAAACCTCACGC............................... 21 1 7.00 1.00 5.00 0.00 1.00 ........................................GTGTGATTTGTAGCAAGGTGA.................................................................... 21 1 6.00 0.00 6.00 0.00 0.00 ............................................................................CCCCTTGTTGCAAACCTCACT................................ 21 1 6.00 0.00 4.00 1.00 1.00 ............................................................................CCCCTTGTTGCAAACCTCACGTT.............................. 23 1 5.00 0.00 3.00 2.00 0.00 ........................................GTGTGATTTGTAGCAAAGTGT.................................................................... 21 1 5.00 0.00 5.00 0.00 0.00 .......................................TGTGTGATTTGTAGCAAAGTGAT................................................................... 23 1 5.00 0.00 4.00 0.00 1.00 ..............................................................................CCTTGTTGCAAACCTCACGCC.............................. 21 1 5.00 0.00 4.00 1.00 0.00 ............................................................................CCCCTTGTTGCAAACCTCACGG............................... 22 1 5.00 0.00 3.00 0.00 2.00 .........................................TGTGATTTGTAGCAAAGTGATATG................................................................ 24 1 5.00 1.00 0.00 0.00 4.00 ........................................CTGTGATTTGTAGCAAAGTGATA.................................................................. 23 1 4.00 0.00 0.00 0.00 4.00 ........................................GTGTGATTTGTAGCAAGGTGAT................................................................... 22 1 4.00 0.00 3.00 0.00 1.00 ........................................GTGTGATTTGTAGCAAAGTGAA................................................................... 22 1 4.00 1.00 1.00 2.00 0.00 ............................................................................CCCCTTGTTACAAACCTCACG................................ 21 1 4.00 1.00 2.00 0.00 1.00 .........................................TGTGATTTGTAGCAAAGTGA.................................................................... 20 1 4.00 0.00 3.00 1.00 0.00 ............................................................................CCCCTTGTTGCAAACCTCACGCA.............................. 23 1 4.00 0.00 3.00 0.00 1.00 .........................................TGTGATTTGTAGCAAAGTGATT.................................................................. 22 1 4.00 0.00 4.00 0.00 0.00 ........................................TTGTGATTTGTAGCAAAGTGATA.................................................................. 23 1 4.00 0.00 0.00 1.00 3.00 ............................................................................CCCCTTGTTGCAAAACTCACG................................ 21 1 4.00 4.00 0.00 0.00 0.00 ............................................................................CCCCTTGTTGCAAACCTCAT................................. 20 1 3.00 0.00 3.00 0.00 0.00 ............................................................................CCCCTTGTTGCACACCTCACG................................ 21 1 3.00 3.00 0.00 0.00 0.00 ............................................................................CCCCTTGTTGCACACCTCACGC............................... 22 1 3.00 3.00 0.00 0.00 0.00 ........................................TTGTGATTTGTAGCAAAGTGAT................................................................... 22 1 3.00 0.00 1.00 1.00 1.00 .........................................TTTGATTTGTAGCAAAGTGATA.................................................................. 22 1 3.00 0.00 2.00 0.00 1.00 ............................................................................CCCCTTGTTGCAAACCTCACAC............................... 22 1 3.00 0.00 1.00 0.00 2.00 ...........................................................................TCCCCTTGTTGCAAACCTCACG................................ 22 1 3.00 3.00 0.00 0.00 0.00 ............................................................................CCCCTTGCTGCAAACCTCACG................................ 21 1 3.00 2.00 1.00 0.00 0.00 ..............................................................................CCTTGTTGCAAACCTCACGC............................... 20 1 3.00 3.00 0.00 0.00 0.00

droSec1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_1:5591420-5591548 -	93.11	CAAAAGAACATAGTTGACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACACAGTGGTAT CTAGAGAACATTTTTGATGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACACAGTGTTTT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ............................................................................CCCCTTGTTGCAAACCTCACG................................ 21 1 1676.00 65.00 675.00 936.00 ........................................GTGTGATTTGTAGCAAAGTGAT................................................................... 22 1 1089.00 588.00 143.00 358.00 ............................................................................CCCCTTGTTGCAAACCTCACGC............................... 22 1 959.00 47.00 397.00 515.00 ........................................GTGTGATTTGTAGCAAAGTGA.................................................................... 21 1 691.00 317.00 90.00 284.00 ............................................................................CCCCTTGTTGCAAACCTCACGT............................... 22 1 566.00 101.00 114.00 351.00 ........................................GTGTGATTTGTAGCAAAGTG..................................................................... 20 1 506.00 153.00 12.00 341.00 ........................................GTGTGATTTGTAGCAAAGTGATA.................................................................. 23 1 120.00 66.00 26.00 28.00 .........................................TGTGATTTGTAGCAAAGTGAT................................................................... 21 1 77.00 20.00 25.00 32.00 ............................................................................CCCCTTGTTGCAAACCTCAC................................. 20 1 56.00 1.00 28.00 27.00 ........................................GTGTGATTTGTAGCAAAGT...................................................................... 19 1 53.00 20.00 4.00 29.00 ........................................GTGTGATTTGTAGCAAAGTGATT.................................................................. 23 1 53.00 30.00 6.00 17.00 ............................................................................CCCCTTGTTGCAAACCTCA.................................. 19 1 41.00 4.00 13.00 24.00 .........................................TGTGATTTGTAGCAAAGTGATA.................................................................. 22 1 34.00 13.00 15.00 6.00 .....................GGTACCGGGCATTTTGGGT......................................................................................... 19 1 32.00 3.00 19.00 10.00 .........................................TGTGATTTGTAGCAAAGTGA.................................................................... 20 1 29.00 8.00 3.00 18.00 .............................................................................CCCTTGTTGCAAACCTCACG................................ 20 1 29.00 2.00 13.00 14.00 ........................................GTGTGATTTGTAGCAAAGTGT.................................................................... 21 1 27.00 15.00 0.00 12.00 .............................................................................CCCTTGTTGCAAACCTCACGC............................... 21 1 21.00 1.00 6.00 14.00 .............................................................................CCCTTGTTGCAAACCTCACGT............................... 21 1 10.00 2.00 4.00 4.00 ............................................................................CCCCTTGTTGCAAACCTCACGTT.............................. 23 1 9.00 2.00 0.00 7.00 ........................................GTGTGATTTGTAGCAAGGTGAT................................................................... 22 1 9.00 2.00 0.00 7.00 ........................................GTGTGATTTGTAGCAAAGAGAT................................................................... 22 1 9.00 9.00 0.00 0.00 .......................................TGTGTGATTTGTAGCAAAGTGAT................................................................... 23 1 8.00 2.00 2.00 4.00 .............................................................................CCCCTxTTGCAAACCTCACG................................ 19 1 8.00 0.00 6.00 2.00 ........................................GTGTGATTTGTAGCAAAGTGATG.................................................................. 23 1 8.00 2.00 1.00 5.00 ........................................GTGTGATTTGTAGCAAAGTGATATG................................................................ 25 1 6.00 4.00 1.00 1.00 ........................................GTGTGATTTGTAGCAAGGTGA.................................................................... 21 1 6.00 1.00 0.00 5.00 ............................................................................CCCCTTGTTGCAAACCTTACG................................ 21 1 6.00 0.00 4.00 2.00 ............................................................................CCCCTTGTTGCAAATCTCACG................................ 21 1 5.00 0.00 3.00 2.00 ............................................................................CCCCTTGTTGCAAACCTCACGCT.............................. 23 1 4.00 1.00 1.00 2.00 ........................................GTGTGATTTGTAGCAAAGTGGT................................................................... 22 1 4.00 2.00 1.00 1.00 ........................................GTGTGATTTGTAGCAAAGCGA.................................................................... 21 1 4.00 2.00 1.00 1.00 ........................................GTGTGATTTGTAGCxAAGTGAT................................................................... 21 1 4.00 2.00 1.00 1.00 ............................................................................CCCCTTGTTGCAAACCTCCCG................................ 21 1 4.00 1.00 3.00 0.00 .......................................TGTGTGATTTGTAGCAAAGTGA.................................................................... 22 1 4.00 1.00 2.00 1.00 ............................................................................CCTCTTGTTGCAAACCTCACG................................ 21 1 4.00 0.00 3.00 1.00 ........................................GTGTGATTTGTAGCAAAG....................................................................... 18 1 4.00 0.00 0.00 4.00 ........................................GTGTGATTTGTAGCAAGGTGATA.................................................................. 23 1 4.00 2.00 1.00 1.00 ............................................................................CCCCTTGTTGCAAACCTCACGA............................... 22 1 3.00 2.00 0.00 1.00 ............................................................................CCCCTTGTTGAAAACCTCACG................................ 21 1 3.00 0.00 1.00 2.00 ........................................GTGTGGTTTGTAGCAAAGTGA.................................................................... 21 1 3.00 1.00 2.00 0.00 ......................GTACCGGGCATTTTGGGT......................................................................................... 18 1 3.00 0.00 3.00 0.00 .......................................TGTGTGATTTGTAGCAAAGTG..................................................................... 21 1 3.00 1.00 0.00 2.00 ........................................GTGTGATTTTTAGCAAAGTGA.................................................................... 21 1 3.00 1.00 1.00 1.00 ............................................................................CCCCTTATTGCAAACCTCACGC............................... 22 1 3.00 0.00 0.00 3.00 ........................................GTGTGATTTGTAGCAAGGTG..................................................................... 20 1 3.00 0.00 0.00 3.00 ........................................GTGTGATTTGTAGCAAAGAG..................................................................... 20 1 3.00 3.00 0.00 0.00 ............................................................................CCCCTTGTTGCAAACCTCACTC............................... 22 1 3.00 0.00 2.00 1.00 ........................................GTGTGATTTGCAGCAAAGTGA.................................................................... 21 1 3.00 1.00 1.00 1.00 ............................................................................CCCCTTGTTGCxAACCTCACGC............................... 21 1 3.00 0.00 2.00 1.00 ............................................................................CCCCTTGTTGCAAACTTCACGC............................... 22 1 3.00 0.00 3.00 0.00 ...............................................................................CTTGTTGCAAACCTCACG................................ 18 1 3.00 1.00 1.00 1.00 ............................................................................CCCCTTGTTGCAAGCCTCACG................................ 21 1 3.00 0.00 0.00 3.00 ............................................................................CCCCTTGTTGCAAATCTCACGC............................... 22 1 3.00 0.00 3.00 0.00 ........................................GTGTGATTTGTAGCAAAGTC..................................................................... 20 1 3.00 0.00 0.00 3.00 ........................................GTGTGAxTTGTAGCAAAGTGA.................................................................... 20 1 3.00 0.00 1.00 2.00 ............................................................................CCCCTTGTTGCAAACCTCACT................................ 21 1 3.00 0.00 1.00 2.00 ............................................................................CCCCTTGTTGCAAACCTTACGC............................... 22 1 3.00 0.00 3.00 0.00 ........................................GTGTGACTTGTAGCAAAGTGA.................................................................... 21 1 3.00 1.00 1.00 1.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:8904838-8904966 +	89.29	CAAAAGAACATAGTTGACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACACAGTGGTAT CTAAATAACATTTTTCATGGCGTTACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGGTGACCTGCGAAATACACAGGGATAT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ............................................................................CCCCTTGTTGCAAACCTCACG................................ 21 1 988.00 342.00 189.00 40.00 312.00 105.00 ............................................................................CCCCTTGTTGCAAACCTCACGC............................... 22 1 882.00 232.00 155.00 24.00 253.00 218.00 ........................................GTGTGATTTGTAGCAAAGTGAT................................................................... 22 1 238.00 23.00 11.00 92.00 27.00 85.00 ........................................GTGTGATTTGTAGCAAAGTGA.................................................................... 21 1 121.00 13.00 5.00 48.00 36.00 19.00 ............................................................................CCCCTTGTTGCAAACCTCACGT............................... 22 1 100.00 32.00 9.00 22.00 34.00 3.00 ........................................GTGTGATTTGTAGCAAAGTGATA.................................................................. 23 1 39.00 5.00 0.00 5.00 1.00 28.00 ............................................................................CCCCTTGTTGCAAACCTCAC................................. 20 1 36.00 1.00 6.00 4.00 8.00 17.00 ........................................GTGTGATTTGTAGCAAAGTG..................................................................... 20 1 28.00 6.00 3.00 10.00 9.00 0.00 ............................................................................CCCCTTGTTGCAAACCTCACGCT.............................. 23 1 19.00 3.00 4.00 1.00 5.00 6.00 ............................................................................CCCCTTGTTGCAAACCTCCCG................................ 21 1 19.00 0.00 2.00 0.00 15.00 2.00 ........................................GTGTGATTTGTAGCAAAGTGATT.................................................................. 23 1 19.00 6.00 0.00 3.00 1.00 9.00 .........................................TGTGATTTGTAGCAAAGTGAT................................................................... 21 1 16.00 0.00 2.00 6.00 7.00 1.00 ............................................................................CCCCTTGTTGCAAACCTCCCGC............................... 22 1 14.00 0.00 4.00 0.00 9.00 1.00 ............................................................................CCCCTTGTTGCAACCCTCACG................................ 21 1 13.00 3.00 0.00 0.00 10.00 0.00 ............................................................................CCCCTTGTTGCCAACCTCACG................................ 21 1 13.00 5.00 2.00 0.00 6.00 0.00 .............................................................................CCCTTGTTGCAAACCTCACG................................ 20 1 13.00 8.00 1.00 0.00 4.00 0.00 ............................................................................CCCCTTGTTGCCAACCTCACGC............................... 22 1 11.00 2.00 5.00 0.00 4.00 0.00 ........................................GTGTGATTTGTAGCAAAGT...................................................................... 19 1 10.00 0.00 2.00 7.00 0.00 1.00 ............................................................................CCCCTTGTTGCACACCTCACG................................ 21 1 10.00 4.00 1.00 0.00 5.00 0.00 ............................................................................CCCCTTGTTGCACACCTCACGC............................... 22 1 10.00 1.00 1.00 0.00 8.00 0.00 .............................................................................CCCTTGTTGCAAACCTCACGC............................... 21 1 10.00 6.00 0.00 0.00 3.00 1.00 ............................................................................CCCCTTGTTGCAAACCTCACGCC.............................. 23 1 9.00 2.00 0.00 0.00 0.00 7.00 .........................................TGTGATTTGTAGCAAAGTGATA.................................................................. 22 1 9.00 3.00 1.00 4.00 0.00 1.00 ............................................................................CCCCTTGTTGCAAACCTCACGA............................... 22 1 6.00 2.00 2.00 0.00 1.00 1.00 ............................................................................CCCCTTGTTGCAAACCTCA.................................. 19 1 6.00 1.00 1.00 0.00 1.00 3.00 ............................................................................CCCCTTGTTGCAACCCTCACGC............................... 22 1 5.00 0.00 1.00 0.00 4.00 0.00 ............................................................................CCCCTTGTTGCAAACATCACG................................ 21 1 5.00 2.00 0.00 0.00 3.00 0.00 ............................................................................CCCCTTGGTGCAAACCTCACGC............................... 22 1 5.00 1.00 2.00 0.00 2.00 0.00 ............................................................................CCCCTTGTTGCAAACCTCACT................................ 21 1 5.00 0.00 0.00 1.00 4.00 0.00 ............................................................................CCCCTTGTTGCAAACCTCACA................................ 21 1 4.00 0.00 0.00 0.00 3.00 1.00 ............................................................................CCCCTTGCTGCAAACCTCACGC............................... 22 1 4.00 0.00 0.00 0.00 4.00 0.00 ............................................................................TCCCTTGTTGCAAACCTCACGC............................... 22 1 4.00 1.00 1.00 1.00 1.00 0.00 ............................................................................CCCCTTGGTGCAAACCTCACG................................ 21 1 4.00 0.00 0.00 0.00 4.00 0.00 ............................................................................TCCCTTGTTGCAAACCTCACG................................ 21 1 3.00 1.00 0.00 0.00 2.00 0.00 ............................................................................CCCCTTCTTGCAAACCTCACG................................ 21 1 3.00 1.00 0.00 0.00 2.00 0.00 ........................................GTGTGATTTGTAGCAAAGTGG.................................................................... 21 1 3.00 0.00 0.00 0.00 0.00 3.00 .....................GTTACTGGGCATTTTGGGT......................................................................................... 19 1 3.00 2.00 0.00 1.00 0.00 0.00 ............................................................................CCCCTTGTTGCATACCTCACG................................ 21 1 3.00 2.00 1.00 0.00 0.00 0.00 ........................................GTGTGCTTTGTAGCAAAGTGA.................................................................... 21 1 3.00 1.00 0.00 1.00 1.00 0.00 ............................................................................CCCCTTGTTTCAAACCTCACG................................ 21 1 3.00 1.00 0.00 0.00 2.00 0.00 ............................................................................CCACTTGTTGCAAACCTCACG................................ 21 1 3.00 1.00 1.00 0.00 1.00 0.00 ........................................GTGTGATTTGTATCAAAGTGAT................................................................... 22 1 3.00 0.00 2.00 0.00 1.00 0.00 ............................................................................CCCCTTGTTGCAAACCTCACTC............................... 22 1 3.00 1.00 0.00 0.00 2.00 0.00 ........................................GTGTGATTTGTAGCAAAGTGCT................................................................... 22 1 3.00 1.00 0.00 0.00 2.00 0.00 ............................................................................CCCCTTGTTGCGAACCTCACG................................ 21 1 3.00 0.00 1.00 0.00 2.00 0.00 ...............................................................................CTTGTTGCAAACCTCACG................................ 18 1 3.00 2.00 0.00 1.00 0.00 0.00 ............................................................................CCCCTTGTCGCAAACCTCACG................................ 21 1 3.00 1.00 0.00 0.00 2.00 0.00 ............................................................................CCCCTTGTTGCAAACCCCACG................................ 21 1 3.00 1.00 1.00 0.00 1.00 0.00

droEre2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_4845:17747735-17747863 +	91.58	CAAAAGAACATAGTTGACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACACAGTGGTAT CAGAAAAACATATTTGATGACGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCGAAGGTGACCTGCGAAATACACAGTGTTAT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ............................................................................CCCCTTGTTGCAAACCTCACG................................ 21 1 1280.00 144.00 140.00 0.00 996.00 ............................................................................CCCCTTGTTGCAAACCTCACGC............................... 22 1 964.00 106.00 169.00 0.00 689.00 ........................................GTGTGATTTGTAGCAAAGTGAT................................................................... 22 1 390.00 10.00 36.00 0.00 344.00 ........................................GTGTGATTTGTAGCAAAGTGA.................................................................... 21 1 248.00 4.00 27.00 0.00 217.00 ........................................GTGTGATTTGTAGCAAAGTG..................................................................... 20 1 239.00 0.00 15.00 0.00 224.00 ............................................................................CCCCTTGTTGCAAACCTCACGT............................... 22 1 191.00 6.00 22.00 0.00 163.00 .......................................TGTGTGATTTGTAGCAAAGTGA.................................................................... 22 1 52.00 0.00 2.00 0.00 50.00 ............................................................................CCCCTTGTTGCAAACCTCAC................................. 20 1 36.00 2.00 4.00 0.00 30.00 ........................................GTGTGATTTGTAGCAAAGTGATA.................................................................. 23 1 33.00 3.00 5.00 0.00 25.00 ............................................................................CACCTTGTTGCAAACCTCACG................................ 21 1 23.00 2.00 0.00 0.00 21.00 .........................................TGTGATTTGTAGCAAAGTGAT................................................................... 21 1 21.00 0.00 6.00 0.00 15.00 .............................................................................CCCTTGTTGCAAACCTCACG................................ 20 1 21.00 4.00 2.00 0.00 15.00 ............................................................................CCCATTGTTGCAAACCTCACGC............................... 22 1 19.00 0.00 0.00 0.00 19.00 ............................................................................CACCTTGTTGCAAACCTCACGC............................... 22 1 19.00 0.00 1.00 0.00 18.00 ............................................................................CCCATTGTTGCAAACCTCACG................................ 21 1 18.00 0.00 0.00 0.00 18.00 ............................................................................CCACTTGTTGCAAACCTCACG................................ 21 1 18.00 0.00 0.00 0.00 18.00 ............................................................................CCACTTGTTGCAAACCTCACGC............................... 22 1 16.00 0.00 0.00 0.00 16.00 ........................................GTGTGATTTGTAGCAAAGT...................................................................... 19 1 15.00 0.00 1.00 0.00 14.00 .............................................................................CCCTTGTTGCAAACCTCACGC............................... 21 1 14.00 4.00 2.00 0.00 8.00 .........................................TGTGATTTGTAGCAAAGTGA.................................................................... 20 1 13.00 0.00 0.00 0.00 13.00 .......................................TGTGTGATTTGTAGCAAAGTG..................................................................... 21 1 12.00 0.00 2.00 0.00 10.00 ........................................GTGTGATTTGTAGCAAAGTGATT.................................................................. 23 1 12.00 1.00 2.00 0.00 9.00 ............................................................................CCCCTTGTTGCAAACCTCACGCT.............................. 23 1 10.00 1.00 3.00 0.00 6.00 .......................................TGTGTGATTTGTAGCAAAGTGAT................................................................... 23 1 9.00 0.00 2.00 0.00 7.00 ............................................................................CCCCTTTTTGCAAACCTCACGC............................... 22 1 9.00 0.00 0.00 0.00 9.00 ............................................................................ACCCTTGTTGCAAACCTCACG................................ 21 1 8.00 0.00 1.00 0.00 7.00 ............................................................................CCCCTTGTTGCAAACCTCACTC............................... 22 1 8.00 1.00 1.00 0.00 6.00 ............................................................................CCCCTTGTTGCAAACCTCACT................................ 21 1 8.00 0.00 0.00 0.00 8.00 ............................................................................CCCCTTGTTGCAAACATCACG................................ 21 1 7.00 0.00 0.00 0.00 7.00 ............................................................................CCCCTTTTTGCAAACCTCACG................................ 21 1 7.00 0.00 0.00 0.00 7.00 ............................................................................CCCCTTGTTGCAAACCTCA.................................. 19 1 7.00 0.00 1.00 0.00 6.00 ........................................GTGTGATTTGTAGCAAAG....................................................................... 18 1 7.00 0.00 1.00 0.00 6.00 ........................................GTGTTATTTGTAGCAAAGTGAT................................................................... 22 1 6.00 0.00 0.00 0.00 6.00 ............................................................................CCACTTGTTGCAAACCTCACGT............................... 22 1 6.00 0.00 0.00 0.00 6.00 ............................................................................TCCCTTGTTGCAAACCTCACGC............................... 22 1 6.00 1.00 3.00 0.00 2.00 .............................................................................CCCTTGTTGCAAACCTCACGT............................... 21 1 6.00 0.00 0.00 0.00 6.00 ........................................GTGTGATTTGTAGCAAAGTTAT................................................................... 22 1 6.00 1.00 0.00 0.00 5.00 ............................................................................CCCCTTGTTGCAAACCTCCCG................................ 21 1 6.00 2.00 3.00 0.00 1.00 ............................................................................CCCATTGTTGCAAACCTCACGT............................... 22 1 6.00 0.00 0.00 0.00 6.00 ............................................................................CCCCTTGTTGCAAACCTCACGCC.............................. 23 1 5.00 2.00 1.00 0.00 2.00 ............................................................................CCCCTTGTTTCAAACCTCACG................................ 21 1 5.00 0.00 0.00 0.00 5.00 ............................................................................CCCCTTGTTGCAAACATCACGC............................... 22 1 5.00 0.00 0.00 0.00 5.00 ........................................GTGTGATTTGTAGCAAAGTGT.................................................................... 21 1 4.00 0.00 1.00 0.00 3.00 ............................................................................CCCCTTGTTGCAAACCTAACG................................ 21 1 4.00 0.00 0.00 0.00 4.00 ............................................................................CCCCTTGTTGCAAACCTAACGC............................... 22 1 4.00 0.00 0.00 0.00 4.00 ........................................GTGTGATTTGTAGCAAAGTGATG.................................................................. 23 1 4.00 1.00 0.00 0.00 3.00 ............................................................................CCCCTTGCTGCAAACCTCACG................................ 21 1 4.00 1.00 0.00 0.00 3.00 ............................................................................CCCCTTGTTGCAGACCTCACG................................ 21 1 4.00 1.00 1.00 0.00 2.00 ............................................................................CCCCTTGTTGCAAACCTCACGA............................... 22 1 3.00 0.00 2.00 0.00 1.00 ............................................................................CCCCTTGTTGAAAACCTCACG................................ 21 1 3.00 0.00 0.00 0.00 3.00 ........................................GTGTGATTTGCAGCAAAGTGAT................................................................... 22 1 3.00 0.00 1.00 0.00 2.00 ............................................................................CCCCTTATTGCAAACCTCACG................................ 21 1 3.00 1.00 0.00 0.00 2.00 ........................................GTGTGATTTGTAGCAAAGTTA.................................................................... 21 1 3.00 0.00 1.00 0.00 2.00 ............................................................................CCCCTTGCTGCAAACCTCACGC............................... 22 1 3.00 3.00 0.00 0.00 0.00 .............................................................................CCCCTxTTGCAAACCTCACG................................ 19 1 3.00 0.00 0.00 0.00 3.00 .........................................TGTGATTTGTAGCAAAGTGATA.................................................................. 22 1 3.00 1.00 0.00 0.00 2.00 ............................................................................CCCCTTGTTGCAAACCTCACCC............................... 22 1 3.00 1.00 0.00 0.00 2.00 ........................................GTGTGATTTGTAGCAAGGTGA.................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 ............................................................................CCCCTTGTTGCAAACCTTT.................................. 19 1 3.00 0.00 0.00 0.00 3.00 ............................................................................CCCCTTGTTGCCAACCTCACG................................ 21 1 3.00 1.00 1.00 0.00 1.00 ............................................................................CCCCTTGTTACAAACCTCACG................................ 21 1 3.00 0.00 0.00 0.00 3.00 .....................GGTACCGGGCATTTTGGGT......................................................................................... 19 1 3.00 0.00 0.00 0.00 3.00 ............................................................................CCCCTTGTTGCxAACCTCACG................................ 20 1 3.00 0.00 0.00 0.00 3.00 ............................................................................CCCCTTGTTTCAAACCTCACGC............................... 22 1 3.00 1.00 1.00 0.00 1.00 ............................................................................CCCCTTGTTGCAAGCCTCACGC............................... 22 1 3.00 1.00 0.00 0.00 2.00 ..............................................................................CCTTGTTGCAAACCTCACG................................ 19 1 3.00 0.00 0.00 0.00 3.00

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000453809:442538-442687 -	58.49	CAAAAGAACATAGTTGACGGCGG---TA---------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGA-TC-------------TGCGAAATACACAGTGGTAT TAAAA-----TAATTGGTGTAGGGGATATTAAAGTATCTGGGCGTTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGGATCCCACATAACATCAAATGAAATAAGCTGAAGTGA Size Hit Count Total Norm

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000409462:417379-417508 +	74.19	CAAAA----GAACATAGTTGACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACACAGTGGTAT TATAAATCCGAATAAATTCCTCGGCAAT---GGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCGAAGATGAGTTCCATAAACAACCCGAATAG Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302292:862273-862408 -	74.71	CAAAAGAACATAGTTGAC--GGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGA-TCTGCGAAATA-CAC--AGTG-GTAT -AAAAAAATGTCTTCAACTCTTCAGTACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGAGTCCGTTAAACATCACCAAACGAATAT Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000415260:195646-195766 +	76.81	CAAAAGAACATAGTTGACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACACAGTGGTAT TGAATAAATATA-------GCAGTTCAGGACATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGA-ATCCGAAATACAACGCCAAAT Size Hit Count Total Norm

droEle1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000491214:3580572-3580696 -	79.64	CAAAAGAACATAGTTGACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATG--ATCTGCGAAATACACAGTGGTAT CACACGAGGATTTTC-----CGGTTCAGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGAGACCTATGAAACA-ACATTAGTTA Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000779932:485536-485675 -	69.48	CAAAAGAACATAGTTGACGG--CGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACA----------CAGTGGTAT CAG-TGAACAAATTGGATTGTCCGACTCTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGAGTCCCACAAAACAACATTAATTAAAGTGGTAA Size Hit Count Total Norm

droKik1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302367:405235-405359 +	72.48	CAAAAGAACATAGTTGACGGCGGTA--------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACACAGTGGTAT C------------TTGGCATTTGTGACTATCAAGTGGGCATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGTATTTGATGATCCCCTTGTTGCAAACCTCACGCCAAAGATGGAATCCTATCCACATCAAGGAAG Size Hit Count Total Norm

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_13266:2579688-2579821 +	70.02	CAAAAGAACA---TAGTTGACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAA--TACACAGTGGTAT TAATGGAATCAGTAAGTGGAAAGGTGTACTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATAGGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCCAAGGTGCTTTCCAACGGCAACATATCAGCAA Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ...............................................................................CCCCTTGTTGCAAACCTCACG.................................. 21 1 550.00 32.00 285.00 149.00 84.00 ...........................................GTGTGATTTGTGGCAAAGTGA...................................................................... 21 1 488.00 355.00 115.00 15.00 3.00 ...............................................................................CCCCTTGTTGCAAACCTCACGC................................. 22 1 283.00 14.00 100.00 105.00 64.00 ...........................................GTGTGATTTGTGGCAAAGTGAT..................................................................... 22 1 235.00 100.00 119.00 14.00 2.00 ...............................................................................CCCCTTGTTGCAAACCTCACGT................................. 22 1 156.00 33.00 61.00 51.00 11.00 ...........................................GTGTGATTTGTGGCAAAGTG....................................................................... 20 1 144.00 74.00 61.00 9.00 0.00 ...........................................GTGTGATTTGTGGCAAAGT........................................................................ 19 1 66.00 48.00 16.00 1.00 1.00 ........................TGTACTGGACATTTTGGGT........................................................................................... 19 1 57.00 7.00 44.00 3.00 3.00 ............................................TGTGATTTGTGGCAAAGTGA...................................................................... 20 1 38.00 14.00 18.00 6.00 0.00 ...........................................GTGTGATTTGTGGCAAAGTGATT.................................................................... 23 1 35.00 16.00 19.00 0.00 0.00 ............................................TGTGATTTGTGGCAAAGTGAT..................................................................... 21 1 34.00 10.00 20.00 4.00 0.00 ...........................................GTGTGATTTGTGGCAAAGTGATA.................................................................... 23 1 25.00 5.00 20.00 0.00 0.00 ...............................................................................CCCCTTGTTGCAAACCTCAC................................... 20 1 19.00 3.00 8.00 5.00 3.00 ...........................................GTGTGATTTGTGGCAAAG......................................................................... 18 1 8.00 2.00 4.00 2.00 0.00 ...........................................GTGTGATTTGTGGCAAAGTGATAGGT................................................................. 26 1 8.00 8.00 0.00 0.00 0.00 ...........................................GTGTGATTTGTGGCAAAGTGC...................................................................... 21 1 8.00 6.00 1.00 1.00 0.00 ...............................................................................CCCATTGTTGCAAACCTCACG.................................. 21 1 6.00 0.00 5.00 1.00 0.00 ................................................................................CCCTTGTTGCAAACCTCACG.................................. 20 1 6.00 0.00 2.00 4.00 0.00 ...............................................................................CCCCTTGTTGCAAACCTCACGCA................................ 23 1 6.00 0.00 1.00 0.00 5.00 ............................................TGTGATTTGTGGCAAAGTGATA.................................................................... 22 1 6.00 2.00 3.00 0.00 1.00 ...........................................GTGTGATTTGTGGCAAAGTGT...................................................................... 21 1 5.00 4.00 1.00 0.00 0.00 ...............................................................................CCCCTTGTTGCAAACCTCACTC................................. 22 1 5.00 0.00 1.00 3.00 1.00 ...........................................GTGTGATTTGTGGCAAAGTGATC.................................................................... 23 1 5.00 1.00 4.00 0.00 0.00 ...............................................................................CCCCTTGTTGCAAACCTCACT.................................. 21 1 5.00 0.00 5.00 0.00 0.00 ...........................................GTGTGATTTGTTGCAAAGTGA...................................................................... 21 1 5.00 2.00 2.00 1.00 0.00 ............................................TGTGATTTGTGGCAAAGTG....................................................................... 19 1 5.00 1.00 4.00 0.00 0.00 ...............................................................................ACCCTTGTTGCAAACCTCACG.................................. 21 1 5.00 0.00 2.00 3.00 0.00 ................................................................................CCCTTGTTGCAAACCTCACGC................................. 21 1 5.00 0.00 0.00 4.00 1.00 ...............................................................................CCCCTTGTTGCAAACCTCACGCT................................ 23 1 5.00 0.00 3.00 2.00 0.00 ...........................................GTGTGATTTGTGACAAAGTGA...................................................................... 21 1 4.00 4.00 0.00 0.00 0.00 ...............................................................................CCACTTGTTGCAAACCTCACG.................................. 21 1 4.00 0.00 3.00 1.00 0.00 ..........................................TGTGTGATTTGTGGCAAAGTG....................................................................... 21 1 4.00 0.00 2.00 2.00 0.00 ...............................................................................CCCCTTGTTGCAAACCTCA.................................... 19 1 4.00 1.00 2.00 1.00 0.00 ...............................................................................CCCCTTGTTGCAAACCTCCCG.................................. 21 1 4.00 0.00 0.00 4.00 0.00 ................................................................................CCCTTGTTGCAAACCTCACGT................................. 21 1 4.00 1.00 0.00 3.00 0.00 ...............................................................................TCCCTTGTTGCAAACCTCACG.................................. 21 1 3.00 0.00 1.00 2.00 0.00 ...............................................................................CCCCTTGTTGCAAACCCCACG.................................. 21 1 3.00 0.00 0.00 3.00 0.00 ...............................................................................CACCTTGTTGCAAACCTCACGC................................. 22 1 3.00 0.00 3.00 0.00 0.00 ...........................................GTGTGATTTGCGGCAAAGTG....................................................................... 20 1 3.00 0.00 1.00 2.00 0.00 ...........................................GTGTGATTTGTGGCAGAGTGA...................................................................... 21 1 3.00 2.00 1.00 0.00 0.00 ...........................................GTGTGATTTGTGTCAAAGTGA...................................................................... 21 1 3.00 1.00 1.00 1.00 0.00 ...............................................................................CCCCTGGTTGCAAACCTCACG.................................. 21 1 3.00 0.00 0.00 0.00 3.00 ...........................................GTTTGATTTGTGGCAAAGTG....................................................................... 20 1 3.00 0.00 3.00 0.00 0.00 ...............................................................................CCCCTTGTTTCAAACCTCACG.................................. 21 1 3.00 0.00 1.00 0.00 2.00 ............................................TGTGATTTGTGGCAAAGTGATT.................................................................... 22 1 3.00 2.00 1.00 0.00 0.00 ...............................................................................CCGCTTGTTGCAAACCTCACG.................................. 21 1 3.00 0.00 2.00 0.00 1.00 ...........................................GCGTGATTTGTGGCAAAGTGA...................................................................... 21 1 3.00 2.00 0.00 1.00 0.00 ...............................................................................CACCTTGTTGCAAACCTCACG.................................. 21 1 3.00 0.00 2.00 1.00 0.00

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000396759:1640703-1640838 +	68.66	CAAAAGA--ACATAGTTGACGGCGG-----TACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACACAGTGGTAT---- CTAAGGGTTGAATAGTGAACAG--GTTTTTTACTGGACATTTTGGGTGTGTGATTTGTGGCAATGTGATAGGTATTTGATAATCCCCTTGTTGCAAACCTCACGCCAAAGATGATATCCATA-TA-GCAACGTTATTAAG Size Hit Count Total Norm

dp4 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr3:405625-405769 -	61.01	CAAAAGAACATAGTTGACGGCGGTACC----------------GGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGA-TCTGCGAAATACACAGTGGTAT--------- CCGGATAACTG----------GGTATCCAGGAATCCAGACTGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGTTGAATCCCACACCTACACTCTCATATAATGATCAT Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ............................................................................................CCCCTTGTTGCAAACCTCACG.......................................... 21 1 498.00 41.00 290.00 166.00 1.00 ............................................................................................CCCCTTGTTGCAAACCTCACGC......................................... 22 1 456.00 33.00 199.00 221.00 3.00 ........................................................GTGTGATTTGTGGCAAAGTG............................................................................... 20 1 142.00 103.00 3.00 35.00 1.00 ............................................................................................CCCCTTGTTGCAAACCTCACGT......................................... 22 1 116.00 31.00 37.00 48.00 0.00 ........................................................GTGTGATTTGTGGCAAAGTGAT............................................................................. 22 1 88.00 42.00 17.00 28.00 1.00 ........................................................GTGTGATTTGTGGCAAAGTGA.............................................................................. 21 1 66.00 42.00 6.00 18.00 0.00 .........................................................TGTGATTTGTGGCAAAGTGAT............................................................................. 21 1 42.00 15.00 5.00 22.00 0.00 ........................................................GTGTGATTTGTGGCAAAGT................................................................................ 19 1 30.00 23.00 1.00 6.00 0.00 .........................................................TGTGATTTGTGGCAAAGTGA.............................................................................. 20 1 26.00 10.00 0.00 16.00 0.00 ........................................................GTGTGATTTGTGGCAAAGTT............................................................................... 20 1 23.00 19.00 0.00 4.00 0.00 ........................................................GTGTGATTTGTGGCAAAGTGT.............................................................................. 21 1 19.00 16.00 0.00 3.00 0.00 .........................................................TGTGATTTGTGGCAAAGTGATA............................................................................ 22 1 14.00 4.00 3.00 7.00 0.00 .........................................................TGTGATTTGTGGCAAAGTGT.............................................................................. 20 1 10.00 7.00 0.00 3.00 0.00 ............................................................................................CCCCTTGTTGCAAACCTCAC........................................... 20 1 9.00 1.00 5.00 3.00 0.00 .............................................................................................CCCTTGTTGCAAACCTCACG.......................................... 20 1 9.00 1.00 6.00 2.00 0.00 .............................................................................................CCCTTGTTGCAAACCTCACGC......................................... 21 1 8.00 1.00 2.00 5.00 0.00 .......................................................TGTGTGATTTGTGGCAAAGTGA.............................................................................. 22 1 6.00 4.00 0.00 2.00 0.00 ............................................................................................CCACTTGTTGCAAACCTCACG.......................................... 21 1 6.00 0.00 2.00 4.00 0.00 ...........................................................................................TCCCCTTGTTGCAAACCTCACG.......................................... 22 1 6.00 0.00 4.00 2.00 0.00 .....................................GACTGTGGACATTTTGGGT................................................................................................... 19 1 5.00 1.00 4.00 0.00 0.00 ........................................................GTGTGATTTGTGGCAAAGTTT.............................................................................. 21 1 5.00 2.00 0.00 3.00 0.00 ........................................................GTGTGATTTGTGGCAAAGTTTT............................................................................. 22 1 4.00 2.00 0.00 2.00 0.00 .......................................................TGTGTGATTTGTGGCAAAGTG............................................................................... 21 1 4.00 0.00 0.00 4.00 0.00 ............................................................................................CCCCTTGTTGCCAACCTCACGC......................................... 22 1 4.00 0.00 4.00 0.00 0.00 ............................................................................................CCCCTTGTTGCAAACATCACG.......................................... 21 1 4.00 0.00 2.00 2.00 0.00 ............................................................................................CCCCTTGTTGCCAACCTCACG.......................................... 21 1 4.00 0.00 3.00 1.00 0.00 ........................................................GTGTGATTTGTGGCAAAGTGATA............................................................................ 23 1 3.00 2.00 0.00 1.00 0.00 ........................................................GTGTGATTTGTGGCAAAG................................................................................. 18 1 3.00 0.00 1.00 2.00 0.00 ............................................................................................CCACTTGTTGCAAACCTCACGC......................................... 22 1 3.00 0.00 1.00 2.00 0.00 .......................................................TGTGTGATTTGTGGCAAAGTGAT............................................................................. 23 1 3.00 0.00 2.00 1.00 0.00 ............................................................................................CCCCTTGTTGCAAATCTCACGC......................................... 22 1 3.00 0.00 3.00 0.00 0.00 ............................................................................................CCCCTTGTTGCATACCTCACG.......................................... 21 1 3.00 0.00 3.00 0.00 0.00 ...............................................................................................CTTGTTGCAAACCTCACGC......................................... 19 1 3.00 0.00 3.00 0.00 0.00 ...........................................................................................CCCCCTTGTTGCAAACCTCACG.......................................... 22 1 3.00 0.00 3.00 0.00 0.00 ............................................................................................CCCCTTGGTGCAAACCTCACGC......................................... 22 1 3.00 0.00 2.00 1.00 0.00 ............................................................................................CCCCTTGCTGCAAACCTCACGC......................................... 22 1 3.00 0.00 1.00 2.00 0.00 ............................................................................................CCCCTTGTTGCAAACCTCA............................................ 19 1 3.00 1.00 1.00 1.00 0.00 ............................................................................................CCCCTTGTTGCGAACCTCACG.......................................... 21 1 3.00 0.00 3.00 0.00 0.00

droPer1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_2:590063-590227 -	49.91	CAAAAGAACATAGTTG--------------------------------ACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGA----------------------------TCTGCGAAATACACAGTGGTAT AAGAAAAAAGTTGTTATATCCCGGATAACTGGGTATCCAGGAATCCAGACT---GT---GGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGTTGAATCCCACACCTACACTCTCAGATAATGATC------------------AT Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo ............................................................................................................CCCCTTGTTGCAAACCTCACG............................................................ 21 1 589.00 10.00 98.00 215.00 245.00 21.00 ........................................................................GTGTGATTTGTGGCAAAGTG................................................................................................. 20 1 480.00 432.00 2.00 17.00 27.00 2.00 ............................................................................................................CCCCTTGTTGCAAACCTCACGC........................................................... 22 1 465.00 4.00 33.00 137.00 267.00 24.00 ........................................................................GTGTGATTTGTGGCAAAGTGA................................................................................................ 21 1 331.00 285.00 2.00 13.00 31.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTGAT............................................................................................... 22 1 238.00 179.00 6.00 17.00 36.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTT................................................................................................. 20 1 187.00 156.00 0.00 9.00 18.00 4.00 ........................................................................GTGTGATTTGTGGCAAAGTGT................................................................................................ 21 1 143.00 132.00 0.00 5.00 6.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGT.................................................................................................. 19 1 141.00 121.00 1.00 5.00 14.00 0.00 .........................................................................TGTGATTTGTGGCAAAGTGAT............................................................................................... 21 1 119.00 62.00 1.00 11.00 45.00 0.00 ............................................................................................................CCCCTTGTTGCAAACCTCACGT........................................................... 22 1 105.00 4.00 6.00 39.00 56.00 0.00 .........................................................................TGTGATTTGTGGCAAAGTGA................................................................................................ 20 1 79.00 43.00 0.00 9.00 27.00 0.00 ............................................................................................................CCCCTTGTTGCAAACCTCAC............................................................. 20 1 27.00 1.00 4.00 9.00 12.00 1.00 ........................................................................GTGTGATTTGTGGCAAAGTTT................................................................................................ 21 1 26.00 22.00 0.00 2.00 2.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTGTT............................................................................................... 22 1 17.00 15.00 0.00 0.00 2.00 0.00 .........................................................................TGTGATTTGTGGCAAAGTGT................................................................................................ 20 1 17.00 10.00 0.00 2.00 5.00 0.00 .......................................................................TGTGTGATTTGTGGCAAAGTGA................................................................................................ 22 1 15.00 6.00 1.00 2.00 6.00 0.00 .......................................................................TGTGTGATTTGTGGCAAAGTGAT............................................................................................... 23 1 15.00 10.00 2.00 1.00 2.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTGATA.............................................................................................. 23 1 14.00 9.00 2.00 1.00 0.00 2.00 ............................................................................................................CCCCTTGTTGCAAACCTCA.............................................................. 19 1 13.00 2.00 0.00 5.00 6.00 0.00 .........................................................................TGTGATTTGTGGCAAAGTG................................................................................................. 19 1 11.00 7.00 0.00 1.00 3.00 0.00 ........................................................................GTGTGATTTGTGGCAAAG................................................................................................... 18 1 10.00 5.00 1.00 3.00 1.00 0.00 ...............................................GACT---GT---GGACATTTTGGGT..................................................................................................................... 19 1 10.00 9.00 0.00 1.00 0.00 0.00 .........................................................................TGTGATTTGTGGCAAAGTGATA.............................................................................................. 22 1 10.00 3.00 1.00 4.00 2.00 0.00 .............................................................................................................CCCTTGTTGCAAACCTCACGC........................................................... 21 1 9.00 0.00 2.00 1.00 6.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTC................................................................................................. 20 1 7.00 6.00 0.00 1.00 0.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTGAA............................................................................................... 22 1 6.00 5.00 0.00 0.00 1.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTGTC............................................................................................... 22 1 6.00 6.00 0.00 0.00 0.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTGATT.............................................................................................. 23 1 6.00 5.00 0.00 0.00 1.00 0.00 .............................................................................................................CCCTTGTTGCAAACCTCACG............................................................ 20 1 5.00 0.00 1.00 1.00 3.00 0.00 ...........................................................................................................TCCCCTTGTTGCAAACCTCACG............................................................ 22 1 5.00 0.00 1.00 2.00 2.00 0.00 ............................................................................................................CACCTTGTTGCAAACCTCACG............................................................ 21 1 5.00 0.00 0.00 3.00 2.00 0.00 ............................................................................................................TCCCTTGTTGCAAACCTCACGC........................................................... 22 1 4.00 0.00 0.00 1.00 3.00 0.00 ............................................................................................................CCCCTTGGTGCAAACCTCACGC........................................................... 22 1 4.00 0.00 0.00 1.00 3.00 0.00 ............................................................................................................CCCCTTGGTGCAAACCTCACG............................................................ 21 1 4.00 0.00 1.00 0.00 3.00 0.00 ............................................................................................................CCCCTTGTTGCAAACCTCACGCT.......................................................... 23 1 4.00 0.00 1.00 2.00 1.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTGATATGC........................................................................................... 26 1 4.00 4.00 0.00 0.00 0.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTGATTC............................................................................................. 24 1 3.00 3.00 0.00 0.00 0.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTTTT............................................................................................... 22 1 3.00 2.00 0.00 0.00 1.00 0.00 ............................................................................................................CCCCTTGTTGCATACCTCACGC........................................................... 22 1 3.00 0.00 0.00 0.00 3.00 0.00 ............................................................................................................CCCCTTGTTGCAAACATCACG............................................................ 21 1 3.00 0.00 0.00 0.00 3.00 0.00 ............................................................................................................CACCTTGTTGCAAACCTCACGC........................................................... 22 1 3.00 0.00 1.00 0.00 2.00 0.00 ............................................................................................................CCCCTTGTTGCACACCTCACGC........................................................... 22 1 3.00 0.00 1.00 0.00 1.00 1.00 ........................................................................GTGTGATTTGTGGCAAAGTGATATG............................................................................................ 25 1 3.00 3.00 0.00 0.00 0.00 0.00 ........................................................................GTGTGATTTGTAGCAAAGTGA................................................................................................ 21 1 3.00 3.00 0.00 0.00 0.00 0.00 ............................................................................................................CCCCTTGTTGCATACCTCACG............................................................ 21 1 3.00 0.00 1.00 0.00 2.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTTA................................................................................................ 21 1 3.00 2.00 0.00 0.00 1.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTA................................................................................................. 20 1 3.00 1.00 0.00 0.00 2.00 0.00 ............................................................................................................CCCCTGGGTGCAAACCTCACGC........................................................... 22 1 3.00 0.00 0.00 0.00 3.00 0.00 ............................................................................................................CCACTTGTTGCAAACCTCACG............................................................ 21 1 3.00 0.00 1.00 0.00 2.00 0.00 ............................................................................................................CCCCTTGTTGCAACCCTCACG............................................................ 21 1 3.00 0.00 0.00 0.00 3.00 0.00 ........................................................................GTGTGATTTGTGGCAAAGTGTA............................................................................................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00 ............................................................................................................CCCCTTGTTGCAAACCTCACTC........................................................... 22 1 3.00 0.00 0.00 2.00 1.00 0.00 ............................................................................................................CCCCTCGTTGCAAACCTCACG............................................................ 21 1 3.00 0.00 0.00 1.00 2.00 0.00

droWil1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_181141:3254354-3254482 +	69.31	CAAAAGAACA------TAGTTGACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCC--AAAGATGATCTGCGAAATACA-CAGTGGTAT ---AAGTACATTTGTTTAGTTAAAACGAATTGTGGGCATTTCGGGCGTGTGATTTGTAGCAAAGTGATATGTACTTGATAATCCCCTTGTTGCAAACCTCACGCCGGAAAGATG-TCTCC-AAATACATCAGT----- Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head ..................................................................................CCCCTTGTTGCAAACCTCACG................................... 21 1 1624.00 23.00 712.00 693.00 196.00 ..................................................................................CCCCTTGTTGCAAACCTCACGC.................................. 22 1 1583.00 41.00 646.00 403.00 493.00 ..............................................GTGTGATTTGTAGCAAAGTGAT...................................................................... 22 1 757.00 55.00 301.00 172.00 229.00 ..............................................GTGTGATTTGTAGCAAAGTGA....................................................................... 21 1 226.00 32.00 116.00 43.00 35.00 ..................................................................................CCCCTTGTTGCAAACCTCACGT.................................. 22 1 211.00 14.00 97.00 98.00 2.00 ..............................................GTGTGATTTGTAGCAAAGTGATA..................................................................... 23 1 81.00 2.00 22.00 4.00 53.00 ..............................................GTGTGATTTGTAGCAAAGTGATT..................................................................... 23 1 62.00 6.00 19.00 5.00 32.00 ..............................................GTGTGATTTGTAGCAAAGTG........................................................................ 20 1 56.00 6.00 19.00 29.00 2.00 ...............................................TGTGATTTGTAGCAAAGTGATA..................................................................... 22 1 51.00 1.00 36.00 2.00 12.00 ..................................................................................CCCCTTGTTGCAAACCTCAC.................................... 20 1 40.00 2.00 10.00 19.00 9.00 ..................................................................................CCCCTTGTTGCAAACCTCACGCT................................. 23 1 34.00 0.00 13.00 12.00 9.00 ...............................................TGTGATTTGTAGCAAAGTGAT...................................................................... 21 1 27.00 3.00 12.00 9.00 3.00 ...................................................................................CCCTTGTTGCAAACCTCACGC.................................. 21 1 25.00 1.00 14.00 8.00 2.00 ..................................................................................CCCCTTGTTGCAAACCTCA..................................... 19 1 24.00 6.00 8.00 9.00 1.00 ..............................................GTGTGATTTGTAGCAAAGTGATC..................................................................... 23 1 23.00 3.00 0.00 3.00 17.00 ..............................................GTGTGATTTGTAGCAAAGT......................................................................... 19 1 21.00 13.00 4.00 0.00 4.00 ..................................................................................CCCCTTGTTGCAAACCTCACGCC................................. 23 1 19.00 0.00 4.00 0.00 15.00 ...................................................................................CCCTTGTTGCAAACCTCACG................................... 20 1 17.00 0.00 10.00 7.00 0.00 ..............................................GTGTGATTTGTAGCAAAGTGAC...................................................................... 22 1 12.00 1.00 0.00 1.00 10.00 ..................................................................................CCCATTGTTGCAAACCTCACG................................... 21 1 10.00 0.00 6.00 4.00 0.00 .........................CGAATTGTGGGCATTTCGGGC............................................................................................ 21 1 10.00 0.00 4.00 2.00 4.00 ...........................AATTGTGGGCATTTCGGGC............................................................................................ 19 1 9.00 0.00 3.00 3.00 3.00 ..................................................................................CACCTTGTTGCAAACCTCACG................................... 21 1 9.00 0.00 6.00 3.00 0.00 ..................................................................................CCCCTTGTTGCAAACCTCACGCA................................. 23 1 8.00 0.00 7.00 0.00 1.00 ..............................................GTGTGATTTGTAGCAAAG.......................................................................... 18 1 7.00 0.00 0.00 0.00 7.00 ...............................................TGTGATTTGTAGCAAAGTGA....................................................................... 20 1 7.00 2.00 2.00 2.00 1.00 ..................................................................................CCCCTTGTTGCAAAACTCACGC.................................. 22 1 7.00 0.00 1.00 6.00 0.00 ..............................................GTGTGATTTGTAGCAAAGTGAA...................................................................... 22 1 6.00 1.00 3.00 0.00 2.00 ..............................................GTGTGATTTGTAGCAAAGTGG....................................................................... 21 1 6.00 0.00 0.00 0.00 6.00 ............................ATTGTGGGCATTTCGGGC............................................................................................ 18 1 6.00 0.00 2.00 2.00 2.00 ...................................................................................CCCTTGTTGCAAACCTCACGT.................................. 21 1 6.00 1.00 3.00 2.00 0.00 ..................................................................................CCCCTTGTTGCAAACCTCCCG................................... 21 1 5.00 0.00 2.00 3.00 0.00 ..........................GAATTGTGGGCATTTCGGGC............................................................................................ 20 1 5.00 0.00 0.00 2.00 3.00 ..................................................................................CCCCTTGTTGCAAACCCCACGC.................................. 22 1 5.00 0.00 2.00 2.00 1.00 ................................................GTGATTTGTAGCAAAGTGAT...................................................................... 20 1 5.00 0.00 1.00 0.00 4.00 ..................................................................................CCACTTGTTGCAAACCTCACG................................... 21 1 4.00 0.00 0.00 4.00 0.00 ..................................................................................CCCATTGTTGCAAACCTCACGC.................................. 22 1 4.00 0.00 4.00 0.00 0.00 ..................................................................................CCCCTTGCTGCAAACCTCACG................................... 21 1 4.00 0.00 2.00 1.00 1.00 ..............................................GTGTGATTTGTAGCAAGGTGAT...................................................................... 22 1 4.00 0.00 0.00 3.00 1.00 ..................................................................................CCCCTTGTTGCAAAACTCACG................................... 21 1 4.00 0.00 0.00 4.00 0.00 ..................................................................................CCCCTTGTTGCAAACCTCAAGC.................................. 22 1 4.00 0.00 1.00 3.00 0.00 ..............................................GTGTGATTTGTGGCAAAGTGA....................................................................... 21 1 3.00 1.00 2.00 0.00 0.00 ..................................................................................CCCCTTGTTCCAAACCTCACG................................... 21 1 3.00 0.00 2.00 1.00 0.00 ..................................................................................CCCCTTGTTGCAGACCTCACGC.................................. 22 1 3.00 0.00 0.00 2.00 1.00 ........................ACGAATTGTGGGCATTTCGGGC............................................................................................ 22 1 3.00 0.00 0.00 2.00 1.00 ..................................................................................CACCTTGTTGCAAACCTCACGC.................................. 22 1 3.00 0.00 1.00 2.00 0.00 ..................................................................................CCCCTTGTTGAAAACCTCACG................................... 21 1 3.00 0.00 0.00 3.00 0.00 ....................................................................................CCTTGTTGCAAACCTCACG................................... 19 1 3.00 0.00 2.00 1.00 0.00 ...................................................................................CCCTTGTTGCAAACCTCACGCT................................. 22 1 3.00 0.00 1.00 2.00 0.00 ..................................................................................CCCCTTGTTGAAAACCTCACGC.................................. 22 1 3.00 0.00 0.00 3.00 0.00 ...................................................................................CCCCTxTTGCAAACCTCACG................................... 19 1 3.00 1.00 1.00 1.00 0.00 ..................................................................................CCCCTTGTTGCAAACCTCACT................................... 21 1 3.00 0.00 2.00 1.00 0.00 ..................................................................................CCACTTGTTGCAAACCTCACGC.................................. 22 1 3.00 0.00 3.00 0.00 0.00 ..................................................................................CCCCTTGTTGCAAACCTCACGCG................................. 23 1 3.00 0.00 0.00 3.00 0.00 ..................................................................................CCCCTTGTTGCAAACCTCACGA.................................. 22 1 3.00 0.00 2.00 1.00 0.00 ..................................................................................CCCCTTGTCGCAAACCTCACGC.................................. 22 1 3.00 0.00 2.00 1.00 0.00 ..................................................................................CCCCTTGTTGCAAACCTCACGCAA................................ 24 1 3.00 0.00 3.00 0.00 0.00 ..............................................GTGTGATTTGTAGCAAAGAGAT...................................................................... 22 1 3.00 0.00 2.00 1.00 0.00 ..............................................GTGTGATTTGTGGCAAAGTG........................................................................ 20 1 3.00 0.00 0.00 0.00 3.00 ..................................................................................CCCCTTTTTGCAAACCTCACGC.................................. 22 1 3.00 0.00 2.00 1.00 0.00 ..................................................................................CCCCTTGTTGCAAACCTCACC................................... 21 1 3.00 0.00 1.00 2.00 0.00

droVir3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_12875:19840344-19840491 +	55.29	CAAAAGAACATAGTTGACGGCG-------GTA------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTG-A--TCATCCCCTTGTTGCAAACCTCACGCCAAAGATG---------ATCTGCGAAATACACAGTGGTAT TAT----GCACAGATCATGTCCAGAGTGTGTAATATATCTGCGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC--TTGGATTCCATCCCCTTGTTGCAAACCTCACGCCAAAGGTGGCGCATTTAACCAGCAATATAAAGATTCATGT Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head ............................................................................................CCCCTTGTTGCAAACCTCACG......................................... 21 1 427.00 57.00 202.00 51.00 29.00 88.00 ............................................................................................CCCCTTGTTGCAAACCTCACGC........................................ 22 1 415.00 34.00 125.00 49.00 46.00 161.00 .....................................................GTGTGATTTGTGGCAAAGTGA................................................................................ 21 1 77.00 46.00 27.00 3.00 0.00 1.00 .....................................................GTGTGATTTGTGGCAAAGTGAT............................................................................... 22 1 75.00 50.00 13.00 7.00 0.00 5.00 ...................................TATCTGCGCATTTTGGGC..................................................................................................... 18 1 72.00 0.00 1.00 0.00 9.00 62.00 .....................................................GTGTGATTTGTGGCAAAGTGATC.............................................................................. 23 1 52.00 29.00 3.00 0.00 5.00 15.00 .....................................................GTGTGATTTGTGGCAAAGTG................................................................................. 20 1 43.00 29.00 13.00 0.00 0.00 1.00 ............................................................................................CCCCTTGTTGCAAACCTCACGT........................................ 22 1 42.00 22.00 8.00 10.00 0.00 2.00 ..................................ATATCTGCGCATTTTGGGC..................................................................................................... 19 1 40.00 1.00 4.00 1.00 4.00 30.00 ......................................................TGTGATTTGTGGCAAAGTGATG.............................................................................. 22 1 38.00 17.00 9.00 12.00 0.00 0.00 ............................................................................................CCCCTTGTTGCAAACCTCAC.......................................... 20 1 21.00 5.00 6.00 1.00 1.00 8.00 ............................................................................................CCCCTTGTTGCAAACCTCACGCT....................................... 23 1 18.00 2.00 3.00 4.00 4.00 5.00 ......................................................TGTGATTTGTGGCAAAGTGAT............................................................................... 21 1 13.00 9.00 3.00 1.00 0.00 0.00 ......................................................TGTGATTTGTGGCAAAGTGA................................................................................ 20 1 12.00 4.00 8.00 0.00 0.00 0.00 .....................................................GTGTGATTTGTGGCAAAGTGATA.............................................................................. 23 1 10.00 5.00 0.00 3.00 2.00 0.00 .....................................................GTGTGATTTGTGGCAAAGTGATT.............................................................................. 23 1 7.00 7.00 0.00 0.00 0.00 0.00 .....................................................GTGTGATTTGTGGCAAAGT.................................................................................. 19 1 6.00 1.00 1.00 2.00 0.00 2.00 ............................................................................................CCCCTTGTTGCAAACCTCACGCC....................................... 23 1 6.00 0.00 0.00 1.00 3.00 2.00 ............................................................................................CCCCTTGTTGCAAACCTCA........................................... 19 1 5.00 0.00 1.00 3.00 0.00 1.00 ............................................................................................CCCCTTGTTGCAAACCTCACGCA....................................... 23 1 5.00 0.00 2.00 2.00 1.00 0.00 ...........................................................................................TCCCCTTGTTGCAAACCTCACG......................................... 22 1 4.00 1.00 1.00 2.00 0.00 0.00 ............................................................................................TCCCTTGTTGCAAACCTCACG......................................... 21 1 4.00 0.00 4.00 0.00 0.00 0.00 .................................TATATCTGCGCATTTTGGGC..................................................................................................... 20 1 4.00 0.00 0.00 0.00 1.00 3.00 ............................................................................................CCCCTTGTTGCAAACCTCCCG......................................... 21 1 4.00 1.00 2.00 1.00 0.00 0.00 .............................................................................................CCCTTGTTGCAAACCTCACGCT....................................... 22 1 3.00 0.00 0.00 0.00 0.00 3.00 .............................................................................................CCCTTGTTGCAAACCTCACG......................................... 20 1 3.00 1.00 1.00 1.00 0.00 0.00 ............................................................................................CCCCTTGTTGCATACCTCACG......................................... 21 1 3.00 0.00 3.00 0.00 0.00 0.00 ............................................................................................CCCCTTGTTGCAAACCCCACG......................................... 21 1 3.00 0.00 0.00 3.00 0.00 0.00 .....................................................GTGTGATTTGTGGCAAAGTGT................................................................................ 21 1 3.00 3.00 0.00 0.00 0.00 0.00

droMoj3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_6496:6364073-6364233 -	42.36	CAAAAGAACATAGTTGACGGCGGTA----------------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGA--TCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATC---------------TGCGAAATACACAGTGGTAT TGGATAAAGACTATTCGGAGTGTTATATCTATCATGTGTATTTGCGCATTTTGGTCGTGTGATTTGTGGCAAAGTGATGAGC-TATGATTCCATCCCCTTGTTGCAAACCTCACGCTGAAGGTGACGCATAGCAGCAACAATTGAAAGATATTCGATTAAAC Size Hit Count Total Norm V110 Male body V056 Unknown V049 Head V041 Embryo ..............................................................................................CCCCTTGTTGCAAACCTCACGC.............................................. 22 1 719.00 21.00 241.00 228.00 229.00 ..............................................................................................CCCCTTGTTGCAAACCTCACG............................................... 21 1 667.00 28.00 255.00 205.00 179.00 .........................................................TGTGATTTGTGGCAAAGTGATG................................................................................... 22 1 417.00 204.00 96.00 44.00 73.00 .........................................................TGTGATTTGTGGCAAAGTGAT.................................................................................... 21 1 253.00 100.00 95.00 41.00 17.00 ........................................................GTGTGATTTGTGGCAAAGTGAT.................................................................................... 22 1 169.00 105.00 31.00 12.00 21.00 .........................................................TGTGATTTGTGGCAAAGTGA..................................................................................... 20 1 162.00 63.00 61.00 33.00 5.00 ........................................................GTGTGATTTGTGGCAAAGTGA..................................................................................... 21 1 84.00 52.00 11.00 8.00 13.00 ..............................................................................................CCCCTTGTTGCAAACCTCACGT.............................................. 22 1 74.00 13.00 32.00 16.00 13.00 .............................................................................................TCCCCTTGTTGCAAACCTCACG............................................... 22 1 27.00 0.00 10.00 3.00 14.00 ........................................................GTGTGATTTGTGGCAAAGTGATT................................................................................... 23 1 26.00 21.00 0.00 1.00 4.00 ..............................................................................................CCCCTTGTTGCAAACCTCAC................................................ 20 1 24.00 5.00 10.00 8.00 1.00 ..............................................................................................CCCCTTGTTGCAAACCTCACGCT............................................. 23 1 21.00 2.00 5.00 5.00 9.00 ........................................................GTGTGATTTGTGGCAAAGTGATC................................................................................... 23 1 19.00 16.00 3.00 0.00 0.00 ........................................................GTGTGATTTGTGGCAAAGTG...................................................................................... 20 1 19.00 9.00 7.00 2.00 1.00 .........................................................TGTGATTTGTGGCAAAGTG...................................................................................... 19 1 14.00 5.00 3.00 5.00 1.00 ..............................................................................................CCCCTTGTTGCCAACCTCACG............................................... 21 1 13.00 0.00 0.00 9.00 4.00 ..............................................................................................CCCCTTGTTGCAAACCTCCCG............................................... 21 1 9.00 0.00 2.00 5.00 2.00 ..............................................................................................CCCCTTGTTGCACACCTCACGC.............................................. 22 1 9.00 0.00 1.00 6.00 2.00 .........................................................TGTGATTTGTGGCAAAGTGATC................................................................................... 22 1 8.00 8.00 0.00 0.00 0.00 .........................................................TGTGATTTGTGGCAAAGTGATGT.................................................................................. 23 1 8.00 2.00 3.00 2.00 1.00 ...............................................................................................CCCTTGTTGCAAACCTCACGC.............................................. 21 1 8.00 0.00 3.00 3.00 2.00 ........................................................GTGTGATTTGTGGCAAAGTGATA................................................................................... 23 1 8.00 5.00 0.00 0.00 3.00 .....................................GTATTTGCGCATTTTGGTC.......................................................................................................... 19 1 7.00 1.00 0.00 0.00 6.00 ........................................................GTGTGATTTGTGGCAAAGTGATGAGC-............................................................................... 26 1 6.00 6.00 0.00 0.00 0.00 ..............................................................................................CCCCTTGTTGCCAACCTCACGC.............................................. 22 1 6.00 0.00 0.00 5.00 1.00 .........................................................TGTGATTTGTGGCAAAGTGATT................................................................................... 22 1 6.00 3.00 1.00 2.00 0.00 ..............................................................................................CCCCTTGTTGCATACCTCACGC.............................................. 22 1 5.00 0.00 2.00 2.00 1.00 ..............................................................................................CCCCTTGTTGCAACCCTCACGC.............................................. 22 1 5.00 0.00 4.00 1.00 0.00 ...............................................................................................CCCTTGTTGCAAACCTCACG............................................... 20 1 5.00 0.00 3.00 1.00 1.00 ..............................................................................................CCCCTTGTTGCAAACCTCACGCTT............................................ 24 1 4.00 0.00 1.00 2.00 1.00 ..............................................................................................CCCCTTGTTGCAAACCTCA................................................. 19 1 4.00 0.00 1.00 1.00 2.00 ..............................................................................................CCCCTTGTTGCACACCTCACG............................................... 21 1 4.00 0.00 2.00 1.00 1.00 ..............................................................................................TCCCTTGTTGCAAACCTCACG............................................... 21 1 4.00 0.00 2.00 1.00 1.00 ..............................................................................................CCCCTCGTTGCAAACCTCACGC.............................................. 22 1 3.00 0.00 0.00 1.00 2.00 .............................................................................................TCCCCTTGTTGCAAACCTCAC................................................ 21 1 3.00 0.00 0.00 1.00 2.00 .........................................................TGTGATTTGTGGCAAAGTGATAA.................................................................................. 23 1 3.00 0.00 0.00 0.00 3.00 .........................................................TGTGATTTGTGGCGAAGTGA..................................................................................... 20 1 3.00 0.00 3.00 0.00 0.00 ..............................................................................................CCACTTGTTGCAAACCTCACGC.............................................. 22 1 3.00 0.00 3.00 0.00 0.00 .........................................................TGTGATTTGTGGCAAAGTGATA................................................................................... 22 1 3.00 2.00 0.00 0.00 1.00 ..............................................................................................CCCCTTGTTGCAAACCTCGCGC.............................................. 22 1 3.00 0.00 1.00 2.00 0.00 ..............................................................................................CCCCTTGTTGCAAACCTCACGA.............................................. 22 1 3.00 1.00 0.00 0.00 2.00 ........................................................GTGTGATTTGTGGCAAAGTGATAAA................................................................................. 25 1 3.00 2.00 0.00 0.00 1.00 .........................................................TGTGATTTGTGGCAAAGTGAA.................................................................................... 21 1 3.00 2.00 0.00 0.00 1.00 ........................................................GTGTGATTTGTGGCAAAGT....................................................................................... 19 1 3.00 1.00 1.00 0.00 1.00 .........................................................TGTGATTTGTGGCAAATTGATG................................................................................... 22 1 3.00 1.00 2.00 0.00 0.00 .........................................................TGTGATTTGTGGCAAAGTGATGA.................................................................................. 23 1 3.00 0.00 1.00 1.00 1.00 ..............................................................................................CCCCTTGTTGCAAACCTCACGTC............................................. 23 1 3.00 1.00 1.00 1.00 0.00 ..............................................................................................CCACTTGTTGCAAACCTCACG............................................... 21 1 3.00 0.00 2.00 0.00 1.00 .........................................................TGTGATTTGTGGCACAGTGATG................................................................................... 22 1 3.00 0.00 0.00 2.00 1.00 ..............................................................................................CCCCTCGTTGCAAACCTCACG............................................... 21 1 3.00 0.00 0.00 2.00 1.00 ..............................................................................................ACCCTTGTTGCAAACCTCACGC.............................................. 22 1 3.00 0.00 2.00 0.00 1.00

droGri2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_15245:18189031-18189168 +	62.24	CAAAAGAACATAGTT------GACGGCGGTA---CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCCAAAGATG----ATCTGCGAAATACACAGTGGTAT TAAA---GCATATTAAATTCCGAGTGTGGTATTTCTGTGCATTTTGGGCGTGTGATTTGTGGCAAAGTGAT--GAGCTTGATTCCATCCCCTTGTTGCAAACCTCACGCCGAAGGTGGCGCATCTAAGCAACA-ATATTAATAT Size Hit Count Total Norm V109 Male body .................................................GTGTGATTTGTGGCAAAGTGAT--....................................................................... 22 1 22.00 22.00 .......................................................................................CCCCTTGTTGCAAACCTCACG.................................... 21 1 21.00 21.00 .................................................GTGTGATTTGTGGCAAAGTGA.......................................................................... 21 1 10.00 10.00 .......................................................................................CCCCTTGTTGCAAACCTCACGT................................... 22 1 9.00 9.00 .......................................................................................CCCCTTGTTGCAAACCTCACGC................................... 22 1 7.00 7.00 .................................................GTGTGATTTGTGGCAAAGTGAT--T...................................................................... 23 1 3.00 3.00 .......................................................................................CCCCTTGTTGCAAACCTCAC..................................... 20 1 2.00 2.00 ..................................................TGTGATTTGTGGCAAAGTGAT--G...................................................................... 22 1 2.00 2.00 ..................................................TGTGATTTGTGGCAAAGTGAT--....................................................................... 21 1 1.00 1.00 ..................................................TGTGATTTGTGGCAAAGTGA.......................................................................... 20 1 1.00 1.00 .................................................GTGCGATTTGTGGCAAAGTGAT--....................................................................... 22 1 1.00 1.00 .................................................GTGTGATTTGTGGCAAAGTGAT--TT..................................................................... 24 1 1.00 1.00 .................................................GGGTGATTTGTGGCAAAGTGAT--....................................................................... 22 1 1.00 1.00 .......................................................................................CCCCTTGTTGCAAACCTCA...................................... 19 1 1.00 1.00 ........................................................................................CCCTTGTTGCAAACCTCACG.................................... 20 1 1.00 1.00 .................................................GTGTGATTTGTGGCAAAGTGAT--AAA.................................................................... 25 1 1.00 1.00 .................................................TTGTGATTTGTGGCAAAGTGAT--....................................................................... 22 1 1.00 1.00 .................................................GTGTGATTTGTGGCAAAGTG........................................................................... 20 1 1.00 1.00 .......................................................................................CCCCTTGTTGCxAACCTCACG.................................... 20 1 1.00 1.00

Generated: 04/20/2012 at 05:09:42 EDT