dme-mir-982- 12- and 20-way alignments

dme-mir-982	chrX:4259839-4259931 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 4259894-4259916
   star strand at position 4259855-4259877
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:4259824-4259946 -	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTG----TTTTTATGCA--TCAATTACTTGATATTCATCCT-----------------------------TGAACTAAATGGTTTTAGAGC--------TGCAAGAAAAATTGT
droSim1	chrX:3274541-3274667 -	TATCAAGTTAAAAAACGAAATCATGCTAGATCATTAACAAGTATCATGTAAATTGAATTTTTGTATATA--TCAATTACATGTTATTCGTTCT-----------------------------TGAACTTAATGGTTTTAGAGC--------TGCAAGAAAAATTGT
droSec1	super_4:2464986-2465108 +	TATGAAGTTAAAAAACGAAATCATGCTAGATCAAGAACAAATATCATGTAAATTG----CTTTTTTACA--TAAAATACAGGATATTCGTTCT-----------------------------TGAGCTTAATGGTTATAGAGC--------TGCAAGAAAAATTGT
droYak2	Unknown	TATGAAGTTACAAAATAAAATCATGCTAGATCTTGGAAAAATATCTAATAGATGG----TTTTTATACA--TCAATCAATTGATATTTTTCCT-----------------------------TGAACTAAATGGGTTTAGTGC--------TGCAGCAAAAATGGT
droEre2	Unknown	TATCAAGTTAAAAAATAAAAGCAGTCCAGATCATGGAAAAATATCAAATAGATTG----TTTTATTTCAGTCCAAACAATACATAATCACGCGAGTCATAGTATCGAAATTTAGCAATTTATGAAGTTAAAAAAATATAAAGCCATGCTAGTGCAACAAAAAGAGT
droAna3	scaffold_13335:212413-212464 +	TTTGTGGAT---------------------------------------------------------------CGATTTCCAGTAATTC-------------------------------------------TGCATCAAAATC--------CGGACAAAAAATATT
dp4	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	Unknown	TTGGCTGTTAACAACT-TGTTCGATTTGGCCTCTGGGTAGACTCTATATATGTAA----ATTATATATA--TCTAATCTCTAATATCT------------------------------------------CACGTTTTACACC--------TGCAAAAAAAACTTC
droGri2	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:4259824-4259946 -	NA	TATCAA------GTTAAAA-------A----------------------------A--CGAAATCATGTTAGATC----------------------------------------------------------------------CTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTAC----------------------------------------TTGATA-TTCATCCTTGAACTAAATGGTTTTA--------------------------------------------------------GAGCTGCAAGA----AAAATTGT
droSim1	chrX:3273907-3274029 -	5	TATGAA------GTTAAAA-------A----------------------------A--CAAAATCATGCTAGATC----------------------------------------------------------------------AAGAACAAATATCATGTAAATTGATTTTTTAAATCAACTAC----------------------------------------ACGATA-TTCGTTCTTGAGCTTAATGGTTCTA--------------------------------------------------------GAGCTGCAAGA----AAAATTGT
droSec1	super_4:2466024-2466146 +	7	TATCAA------GTTAAAA-------A----------------------------A--CGAAATCATGCTAGATC----------------------------------------------------------------------TTGGACAAATATCAAGTAGATTATTTTTATACATCAATTTA----------------------------------------TTGTTA-TTTGTCCTTGAACTTAATTGTTTTA--------------------------------------------------------CAGCTGCAAAA----AAAATTGT
droYak2	chrX:4178368-4178492 +	2	TATCAA------GTTCAGA-------A----------------------------ATATAAAATCATGCTAGATC----------------------------------------------------------------------TTGGAAAAATATCTAATAGATGGTTTTTATACATCAATCAA----------------------------------------TTGATA-TTTTTCCTTGAACTAAATGGGTTTA--------------------------------------------------------GTGCTGCAGCA----AAAATGGT
droEre2	scaffold_4690:1630508-1630651 -	1	TATCAA------GTTAAAA-------A----------------------------ATATAAAAGCAGTCCAGATC----------------------------------------------------------------------ATGGAAAAATATCAAATAGATTGTTTTATTTCA----------------------------------------------------------------------------------GTCCAAACAATACATAATCACGCGAGTCATAGTATCGAAATTTAGCAATTTATGAAGTTAAAAAAATATAAAGCCAT
droEug1	scf7180000409076:259969-260081 -	3	TATTAT------TTTCCGC-------A----------------------------T--TTAAATAATATTAAT------------------------------------------------------------------------------ATATATAATATAAATTCA--CTGCAAATTATCAAT----------------------------------------GGAGTA-TCAGTAATGT-AAAGAATGTTGTTAAAACCA-------------------------------------------------------AAACAA----TAAATAGT
droBia1	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415394:1165261-1165394 +	2	TTTCAACAATCAGTAGATT-------A----------------------------C--CGAAATCATATAAAT-ATATAAAATATAATTAACTTTCGAATTTATCCATCAAAAACACAAGATTCGTCTTTTCATCATTCATGTTTTACGGATG-TT----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTAGA----ATGTTTTT
droEle1	scf7180000491011:2115245-2115356 +	2	TATTTG------GTTATTG-TG----A----------------------------T--TGGAATCATAGTTGCT-------------------------------------------------------------------------GTGAATATT----------------TATACAACACT--ATTGTTCTCAATTGAAATGTCAATACA--------------TTTAA----------------AAA--TATATA--------------------------------------------------------GCTTTAC-ATT----AACATTTT
droRho1	scf7180000779334:418263-418387 +	1	TTTCCG-------TGAAATAT-----G----------------------------A--AAAAAGCATTTATGTTT----------------------------------------------------------------------TAAGGTGGATTCTCAGAAGATTGTTTTTAAACATCAATCTT----------------------------------------TTGACAATTCACCCTTAAACAAAATTGTATTA--------------------------------------------------------GTTCTGTAAAA----ATGGATAT
droFic1	scf7180000453901:212756-212888 +	1	AATGGG------CACTAAA------AAAGTGTGTAATTTAAAATTCAATATTTAAACATTAAGTTTTTCGTTTCT----------------------------------------------------------------------TTAGGTTGATTCCTATTCGACTGTATC----------------ATAG---------GCATCAATCCG--------------TTTAGTAT----------------------T---------------------------------------------------------GACTTTTTTAA----AAGATTGT
droKik1	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13335:212413-212477 +	2	TTTGTG------GA----------------------------------------------------------------------------------------------------------------------------------------TCGATTTCCAGTA--------------------------------------------------------------------A-TTCTGCAT---------------CAAAATCCGGACAAAAAA----------------------------------------TATTTT--TTG----AAAATTTT
droBip1	scf7180000396360:112225-112332 +	3	TAAGGA------TTTATAA-------A----------------------------A---------GTGTTTAATT----------------------------------------------------------------------TTTTATAAATATATAATAGAAAGATAATATACATTTATTTT----------------------------------------TAAATA-TTCATAAACTAACCAAATGGTCTTG--------------------------------------------------------GATATTCCA------------GA
dp4	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6496:5428540-5428655 -	3	TTGTTG-------TTGGCTGTTAACAA-------------------------------CTTGTTCGATTTGGCCT----------------------------------------------------------------------CTGGGTAGACTCTATATATGT-------------AAATATA--------------------------TATATATCTAATCTCTAATA-TC-------------TCACGTTTTA--------------------------------------------------------CACCTGCAAAA----AAAACTTC
droGri2	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTG----TTTTTATGCA--TCAATTACTTGATATTCATCCT-----------------------------TGAACTAAATGGTTTTAGAGC--------TGCAAGAAAAATTGT

Size

Hit Count

Total Norm

droSim1

TATCAAGTTAAAAAACGAAATCATGCTAGATCATTAACAAGTATCATGTAAATTGAATTTTTGTATATA--TCAATTACATGTTATTCGTTCT-----------------------------TGAACTTAATGGTTTTAGAGC--------TGCAAGAAAAATTGT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.................................TTAACAAGTATCATGTAAATTG...............................................................................................................	22	1	168.00	3.00	7.00	143.00	15.00
.........................................................................AATTACATGTTATTCGTTCT-----------------------------TG..........................................	22	1	80.00	0.00	0.00	62.00	18.00
.................................................................................GTTATTCATTCT-----------------------------TGAACA......................................	18	1	5.00	0.00	0.00	2.00	3.00
.................................TTAACAAGTATCATGTAAATTGA..............................................................................................................	23	1	5.00	3.00	0.00	2.00	0.00
.................................TTAACAAGTATCATGTAAATTGAA.............................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
.........................................................................AATTACATGTTATTCGTTCT-----------------------------GG..........................................	22	1	4.00	0.00	0.00	3.00	1.00
.........................................................................AACTACATGATATTCGTTCT-----------------------------TG..........................................	22	1	4.00	0.00	0.00	3.00	1.00
.................................TTAACAAGTATCATGTAAATTGG..............................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00
.........................................................................AATTACACGATATTCGTTCT-----------------------------TG..........................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................................................ACGTTATTCATTCT-----------------------------TGAAC.......................................	19	1	2.00	0.00	0.00	1.00	1.00
.........................................................................AATTACATGTTATTCGTTCT-----------------------------TGT.........................................	23	1	2.00	0.00	0.00	2.00	0.00
.................................TTAACAAGTATCATGTAAATTGAAA............................................................................................................	25	1	2.00	2.00	0.00	0.00	0.00
.................................TTAACAAGTATCATGTAAATT................................................................................................................	21	1	2.00	0.00	2.00	0.00	0.00
............................................................................TACACGATATTCGTTCT-----------------------------TG..........................................	19	1	2.00	0.00	0.00	1.00	1.00
................................................................................CGTTATTCATTCT-----------------------------TGAAC.......................................	18	1	2.00	0.00	0.00	0.00	2.00
.........................................................................AATTACATGTTATTCGTTCT-----------------------------............................................	20	1	1.00	0.00	1.00	0.00	0.00
.................................TTAGCGAGTATCATGTAAATTGAA.............................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
.................................TTAACAATTATCATGTAAATTG...............................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.........................................................................AATTACATATTATTCGTTCT-----------------------------TG..........................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................TTAATAAGTATCATGTAAATTG...............................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.................................TTAACAAGTATCATGTAAATGG...............................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.................................TTCACAAGTATCATGTAAATTG...............................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.....................................CAAGTATCATGTAAATTGA..............................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.................................TTAACAAGTATCATGTAAATTGAC.............................................................................................................	24	1	1.00	0.00	0.00	0.00	1.00
.................................TTAACAAGTATCATGTAAATTT...............................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................................TAGGAGC--------TGCAAGAAAAA....	18	1	1.00	0.00	0.00	0.00	1.00
.................................TTAACAAGTATCATGTAAA..................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00

droSec1

TATGAAGTTAAAAAACGAAATCATGCTAGATCAAGAACAAATATCATGTAAATTG----CTTTTTTACA--TAAAATACAGGATATTCGTTCT-----------------------------TGAGCTTAATGGTTATAGAGC--------TGCAAGAAAAATTGT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.........................................................................AAATACAGGATATTCGTTCT-----------------------------T...........................................	21	1	170.00	119.00	20.00	31.00
.........................................................................AAATACAGGATATTCGTTCT-----------------------------TG..........................................	22	1	129.00	115.00	9.00	5.00
..........................................................................AATACAGGATATTCGTTCT-----------------------------TGA.........................................	22	1	58.00	50.00	5.00	3.00
..........................................................................AATACAGGATATTCGTTCT-----------------------------TG..........................................	21	1	58.00	52.00	3.00	3.00
.........................................................................AAATACAGGATATTCGTTCT-----------------------------TGT.........................................	23	1	27.00	23.00	0.00	4.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAGC.......................................	22	1	22.00	8.00	11.00	3.00
..........................................................................AATACAGGATATTCGTTCT-----------------------------TGT.........................................	22	1	14.00	12.00	1.00	1.00
.........................................................................AAATACAGGATATTCGTTCT-----------------------------............................................	20	1	11.00	6.00	0.00	5.00
..........................................................................AATACAGGATATTCGTTCT-----------------------------T...........................................	20	1	9.00	6.00	0.00	3.00
..........................................................................AATACAGGATATTCGTTCT-----------------------------TGAA........................................	23	1	8.00	6.00	1.00	1.00
.........................................................................AAATACAGGATATTCGTTCT-----------------------------TT..........................................	22	1	7.00	7.00	0.00	0.00
..........................................................................AATACAGGATATTCGTTCT-----------------------------TGAT........................................	23	1	5.00	5.00	0.00	0.00
.........................................................................AAATACAGGATATTCGTTCT-----------------------------TGTA........................................	24	1	4.00	4.00	0.00	0.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAG........................................	21	1	3.00	2.00	0.00	1.00
.........................................................................AAATACAGGATATTCGTTCT-----------------------------TGA.........................................	23	1	3.00	3.00	0.00	0.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAGTT......................................	23	1	2.00	1.00	0.00	1.00
......................................................................................................................................GTAxGGAGC--------TGCAAGAAAA.....	18	1	2.00	0.00	2.00	0.00
..........................................................................AATACAGGATATTCGTTCT-----------------------------TGAG........................................	23	1	2.00	2.00	0.00	0.00
..........................................................................AATACAGGATATTCGTTCT-----------------------------TGAAA.......................................	24	1	2.00	1.00	0.00	1.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAGTTT.....................................	24	1	2.00	2.00	0.00	0.00
.........................................................................AAATACAGGACATTCGTTCT-----------------------------TG..........................................	22	1	2.00	2.00	0.00	0.00
.........................................................................AGATACAGGATATTCGTTCT-----------------------------T...........................................	21	1	1.00	1.00	0.00	0.00
.........................................................................AAATACAGGATATTCGTTCT-----------------------------TGAT........................................	24	1	1.00	1.00	0.00	0.00
.........................................................................AAATCCAGGATATTCGTTCT-----------------------------T...........................................	21	1	1.00	1.00	0.00	0.00
................................................................TTACA--TAAAATAAAGTAT..................................................................................	18	1	1.00	0.00	1.00	0.00
..........................................................................AATACAGGATATTCGCTCT-----------------------------TGA.........................................	22	1	1.00	1.00	0.00	0.00
.........................................................................................................................................TAGAGC--------TGCCAGAAAAGT...	18	1	1.00	0.00	1.00	0.00
.............................................................TCTTTACA--TAAAATACAGGATATTCG.............................................................................	26	1	1.00	0.00	1.00	0.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAGTA......................................	23	1	1.00	1.00	0.00	0.00
.........................................................................AAATACAGGATATTCGTTCC-----------------------------TGT.........................................	23	1	1.00	1.00	0.00	0.00
..........................................................................ACTACAGGATATTCGTTCT-----------------------------CG..........................................	21	1	1.00	1.00	0.00	0.00
.........................................................................AAATACAGGATATTCGCTGT-----------------------------TG..........................................	22	1	1.00	1.00	0.00	0.00
.........................................................................AAATACAGGATATTCGTTTT-----------------------------TG..........................................	22	1	1.00	1.00	0.00	0.00
..........................................................................AATACAGGATATTCGTTA..........................................................................	18	1	1.00	0.00	0.00	1.00
.........................................................................AAATACAGGATATTCGTTGT-----------------------------TG..........................................	22	1	1.00	1.00	0.00	0.00
.........................................................................AAATACAGGATATTCGTTAT-----------------------------T...........................................	21	1	1.00	1.00	0.00	0.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAGCTTTT...................................	26	1	1.00	1.00	0.00	0.00
.........................................................................AAATACAGGATCTTCGTTCT-----------------------------TG..........................................	22	1	1.00	1.00	0.00	0.00
..........................................................................................................................................AGAGC--------TGGAAGAAAAATC..	18	1	1.00	0.00	1.00	0.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAGT.......................................	22	1	1.00	1.00	0.00	0.00
..........................................................................AATACAGGATATTCGTTCG-----------------------------TGA.........................................	22	1	1.00	1.00	0.00	0.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAGTTTT....................................	25	1	1.00	0.00	0.00	1.00
..........................................................................AATACGGGATATTCGTTCT-----------------------------TG..........................................	21	1	1.00	0.00	1.00	0.00
.........................................................................AAATACAGGATATTCGTTCT-----------------------------TGAA........................................	24	1	1.00	1.00	0.00	0.00
......................ATGCTxGATGAAGAACAAA.............................................................................................................................	18	1	1.00	0.00	1.00	0.00
...................................................................CA--TAAAATAAAGTATATT...............................................................................	18	1	1.00	0.00	1.00	0.00
.........................................................................AAATACAGGATATTCGTTAT-----------------------------TGT.........................................	23	1	1.00	1.00	0.00	0.00
............................................................................TACTGGATATTCGTTCT-----------------------------TGAGC.......................................	22	1	1.00	1.00	0.00	0.00
.........................................................................AAATACAGGATATCCGTTCT-----------------------------TGT.........................................	23	1	1.00	1.00	0.00	0.00
.........................................................................AAATACAGGATATTCGTTC..........................................................................	19	1	1.00	0.00	0.00	1.00
.........................................................................AAATACAGGATATTCGTTGT-----------------------------T...........................................	21	1	1.00	1.00	0.00	0.00
.........................................................................AAATACAGGATATTCGTTCT-----------------------------TGAAT.......................................	25	1	1.00	1.00	0.00	0.00
.........................................................................AAATACAGGATATTCGCTGT-----------------------------T...........................................	21	1	1.00	1.00	0.00	0.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAGTAT.....................................	24	1	1.00	1.00	0.00	0.00
.........................................................................AAATxCAGGATATTCGTTCT-----------------------------TGAA........................................	23	1	1.00	1.00	0.00	0.00
...........................................................................ATACAGGATATTCGTTCT-----------------------------T...........................................	19	1	1.00	0.00	1.00	0.00
..........................................................................AATACAGGATATTCGTTGT-----------------------------TGA.........................................	22	1	1.00	1.00	0.00	0.00
..........................................................................AATACAGGATATTCGTTCT-----------------------------TGAGC.......................................	24	1	1.00	0.00	1.00	0.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAGCTA.....................................	24	1	1.00	1.00	0.00	0.00
............................................................................TACAGGATATTCGTTCT-----------------------------TGAGCTT.....................................	24	1	1.00	1.00	0.00	0.00
..........................................................................AATACAGGATATTCGTTCT-----------------------------TAA.........................................	22	1	1.00	1.00	0.00	0.00

droYak2

TATGAAGTTACAAAATAAAATCATGCTAGATCTTGGAAAAATATCTAATAGATGG----TTTTTATACA--TCAATCAATTGATATTTTTCCT-----------------------------TGAACTAAATGGGTTTAGTGC--------TGCAGCAAAAATGGT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................AATTGATATTTTTCCT-----------------------------TGAAC.......................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00

droEre2

TATCAAGTTAAAAAATAAAAGCAGTCCAGATCATGGAAAAATATCAAATAGATTG----TTTTATTTCAGTCCAAACAATACATAATCACGCGAGTCATAGTATCGAAATTTAGCAATTTATGAAGTTAAAAAAATATAAAGCCATGCTAGTGCAACAAAAAGAGT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................................................................................................GAAGTTAAAAAATTTTAA..........................	18	1	2.00	0.00	0.00	0.00	2.00
..TGAAGTTAAAAAATAAAAA.................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.........................................................................................................................TGAAGTTAAAAAATTTTAA..........................	19	1	1.00	0.00	0.00	0.00	1.00

droAna3

TTTGTGGAT---------------------------------------------------------------CGATTTCCAGTAATTC-------------------------------------------TGCATCAAAATC--------CGGACAAAAAATATT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
TTTGTGGAT---------------------------------------------------------------CGATTTCCAGTCGTTC-------------------------------------------...................................	25	1	1.00	0.00	0.00	1.00	0.00
..TGTGGAA---------------------------------------------------------------CGATTGCCAGT...................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

dp4

----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

droVir3

----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3

TTGGCTGTTAACAACT-TGTTCGATTTGGCCTCTGGGTAGACTCTATATATGTAA----ATTATATATA--TCTAATCTCTAATATCT------------------------------------------CACGTTTTACACC--------TGCAAAAAAAACTTC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2

----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image							None	None	None	None		None
UNAFold Image							None	None	None	None		None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image							None					None			None	None	None	None		None
UNAFold Image							None					None			None	None	None	None		None