Possible Orthologs for dme-mir-982

droSim1 - 7 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	chrX:3273907-3274029 -	82.38	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TATGAAGTTAAAAAACAAAATCATGCTAGATCAAGAACAAATATCATGTAAATTGATTTTTTAAATCAACTACACGATATTCGTTCTTGAGCTTAATGGTTCTAGAGCTGCAAGAAAAATTGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ...................................................................AACTACACGATATTCGTTCTTG.................................. 22 1 6044.00 38.00 140.00 4416.00 1450.00 ...................................................................AACTACACGATATTCGTTCTGG.................................. 22 1 169.00 0.00 3.00 119.00 47.00 ...................................................................AACTACACGATATTCGTTCTTGT................................. 23 1 122.00 0.00 5.00 110.00 7.00 ....................................................................ACTACACGATATTCGTTCTTG.................................. 21 1 31.00 0.00 0.00 31.00 0.00 ..................................................................CAACTACACGATATTCGTTCTTG.................................. 23 1 26.00 0.00 2.00 15.00 9.00 ...................................................................AACTACACGATATTCGTTCTTGG................................. 23 1 17.00 0.00 0.00 15.00 2.00 ...................................................................AACTACACGATATTCGTTCTTGA................................. 23 1 9.00 0.00 1.00 8.00 0.00 ....................................................................ACTACACGATATTCGTTCTTGT................................. 22 1 7.00 0.00 0.00 6.00 1.00 ...................................................................GACTACACGATATTCGTTCTTG.................................. 22 1 7.00 0.00 0.00 6.00 1.00 ...................................................................AGCTACACGATATTCGTTCTTG.................................. 22 1 6.00 0.00 0.00 3.00 3.00 ...................................................................AACTACACGATATTTGTTCTTG.................................. 22 1 5.00 0.00 0.00 3.00 2.00 ...................................................................AACTACACGATATTCGTTCTT................................... 21 1 4.00 1.00 0.00 3.00 0.00 ...................................................................AACTACACGATATTCGTTCTTT.................................. 22 1 4.00 1.00 0.00 3.00 0.00 ...................................................................AACTACACGACATTCGTTCTTG.................................. 22 1 4.00 0.00 0.00 3.00 1.00 ...................................................................AACTACACGATATTCGTTCT.................................... 20 1 4.00 1.00 0.00 2.00 1.00 ...................................................................AACTACATGATATTCGTTCTTG.................................. 22 2 2.00 0.00 0.00 1.50 0.50 ...................................................................AACCACACGATATTCGTTCTTG.................................. 22 1 3.00 0.00 0.00 2.00 1.00 ...................................................................AACTACACGATATTCGTTCTCG.................................. 22 1 3.00 1.00 0.00 2.00 0.00 ...................................................................AACTACACGATATTCGTTCCTG.................................. 22 1 3.00 0.00 0.00 3.00 0.00 .....................................................................CTACACGATATTCGTTCTTG.................................. 20 1 3.00 0.00 0.00 3.00 0.00 ...................................................................AACTACACAATATTCGTTCTTG.................................. 22 1 3.00 0.00 0.00 2.00 1.00 ...................................................................GACTACACGATATTCGTTCTGG.................................. 22 1 2.00 0.00 0.00 0.00 2.00 ...................................................................AACTACACGATATTCGTTCTTA.................................. 22 1 2.00 0.00 0.00 2.00 0.00 ...................................................................AACTACACGATATTCGTTATTG.................................. 22 1 2.00 0.00 0.00 2.00 0.00 ...................................................................AACTACACGATATTCTTTCTTG.................................. 22 1 2.00 0.00 0.00 1.00 1.00 ...................................................................AACTACACGATATTCGTCCTTG.................................. 22 1 2.00 0.00 0.00 2.00 0.00 ...................................................................AACTACGCGATATTCGTTCTTG.................................. 22 1 2.00 0.00 0.00 1.00 1.00 ...................................................................AATTACACGATATTCGTTCTTG.................................. 22 2 1.00 0.00 0.00 0.00 1.00 ...................................................................AACTACACGATATTCGGTCTTG.................................. 22 1 2.00 0.00 0.00 2.00 0.00 ...................................................................CACTACACGATATTCGTTCTTG.................................. 22 1 2.00 0.00 0.00 1.00 1.00 ......................................................................TACACGATATTCGTTCTTG.................................. 19 1 2.00 0.00 0.00 1.00 1.00 ...................................................................AACTACACGATATTCGTTCTTGC................................. 23 1 2.00 0.00 0.00 2.00 0.00 ...................................................................AACTGCACGATATTCGTTCTTG.................................. 22 1 2.00 0.00 0.00 2.00 0.00 ...................................................................AACTACACGATATTCATTCTTG.................................. 22 1 2.00 0.00 0.00 1.00 1.00 ...................................................................AACTACAGGATATTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGATATTCGTTCATG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGAGATTCGTTCT.................................... 20 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGATATTCCTTCTTG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGxxATTCGTTCTTG.................................. 20 1 1.00 0.00 1.00 0.00 0.00 ...................................................................AACTACACTATATTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGGTATTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................ATCTACACGATATTCGTTCTGG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGATAATCGTTCTTGT................................. 23 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACAACACGATATTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 0.00 1.00 ...................................................................AACTACACTATATTCGTTCTGG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGATATTGGTTTTTG.................................. 22 1 1.00 0.00 0.00 0.00 1.00 ...................................................................AACTACACGATATTCGTTTTTG.................................. 22 1 1.00 1.00 0.00 0.00 0.00 ...................................................................AACTACAAGATATTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 0.00 1.00 ...................................................................AACTACACGATATCCGTTCTTG.................................. 22 1 1.00 0.00 0.00 0.00 1.00 ...................................................................AACTACACGATGTTCGTTCTT................................... 21 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGATGTTCGTTCTGG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ....................................................................ACTACACGATATTCGTTCTTGA................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGATCTTCGTTCTTG.................................. 22 1 1.00 1.00 0.00 0.00 0.00 ...................................................................AACTxCACGATATTCGTTCTTG.................................. 21 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTATACGATATTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGATATTCGATCTTG.................................. 22 1 1.00 0.00 0.00 0.00 1.00 ...................................................................AACTACACGATATACGTTCTTG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGATATTTGTTCTGG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGGTATTCGTTCTTGT................................. 23 1 1.00 0.00 0.00 1.00 0.00 ....................................................................ACTACACGATATTCGTTCTTGC................................. 22 1 1.00 0.00 0.00 0.00 1.00 ...................................................................AACTAAACGATATTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 0.00 1.00 ........................................................................CACGATATTCGTTCTTGT................................. 18 1 1.00 0.00 0.00 1.00 0.00 .....................................CAAGTATCATGTAAATTGA................................................................... 19 2 0.50 0.00 0.00 0.00 0.50 ...................................................................AACTACACGATACTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 0.00 1.00 ...................................................................AACTGCACGATATTCGTTCTGG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AACTACACGATATTGGTTCTTG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AAGTACACGATATTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 0.00 1.00 ...................................................................AACTACACGATATTCGCTCTTG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...................................................................AAATACACGATATTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 1.00 0.00
2	chrX:3273505-3273629 -	82.09	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGA--AAAATTGT TATCAAGTTAAAAAACGAAATCATGCGAGATCTTGGACAAATATCAAGTAGATTATTATTATACATCAATTTATTGTTATTTGTCCTTGAACTTAATTGTTTTACAGCTGCAAAAAAAAAATTGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ......................................................................TTATTGTTATTTGTCCTTGAAC................................. 22 1 508.00 16.00 27.00 347.00 118.00 ..............................TCTTGGACAAATATCAAGTAGAT........................................................................ 23 1 79.00 0.00 0.00 67.00 12.00 ..............................TCTTGGACAAATATCAAGTAGATA....................................................................... 24 1 33.00 0.00 0.00 23.00 10.00 ..............................TCTTGGACAAATATCAAGTAGA......................................................................... 22 1 27.00 0.00 2.00 19.00 6.00 ..............................TCTTGGACAAATATCAAGTAGATT....................................................................... 24 1 26.00 0.00 0.00 18.00 8.00 ......................................................................TTATTGTTATTTGTCCTTG.................................... 19 1 21.00 0.00 5.00 16.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGAACT................................ 23 1 10.00 0.00 2.00 8.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGAAA................................. 22 1 8.00 4.00 0.00 3.00 1.00 ......................................................................TTATTGTTATTTGTCCTTGAA.................................. 21 1 7.00 2.00 0.00 4.00 1.00 ......................................................................TTATTGTTATTTGTCCTTGAC.................................. 21 1 5.00 0.00 0.00 4.00 1.00 ......................................................................TTATTGTTATTTGTCCTTGA................................... 20 1 5.00 0.00 0.00 5.00 0.00 ................................TTGGACAAATATCAAGTAGATT....................................................................... 22 1 4.00 0.00 0.00 3.00 1.00 ..............................TCTTGGACAAATATCAAG............................................................................. 18 1 4.00 0.00 0.00 4.00 0.00 ..............................TCTTGGACAAATATCAATTAGAT........................................................................ 23 1 3.00 0.00 0.00 0.00 3.00 .......................................................................TATTGTTATTTGTCCTTGAAC................................. 21 1 3.00 0.00 0.00 2.00 1.00 ..............................TCTTGGACAAATATCAAGTA........................................................................... 20 1 3.00 0.00 0.00 3.00 0.00 ..............................TCTTGGACAAATATCAAGTAGATTT...................................................................... 25 1 3.00 0.00 0.00 3.00 0.00 ......................................................................TTATTGTTATTTTTCCTTGAAC................................. 22 1 3.00 0.00 0.00 2.00 1.00 ..............................TCTTGGACAAATATCAAGTAGATAA...................................................................... 25 1 2.00 0.00 0.00 1.00 1.00 ......................................................................TTATTGTTATTTGTCCTTGAAT................................. 22 1 2.00 0.00 0.00 1.00 1.00 ........................................................................ATTGTTATTTGTCCTTGAAC................................. 20 1 2.00 0.00 0.00 2.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGT................................... 20 1 2.00 0.00 0.00 2.00 0.00 ..............................TCTTGGACAAATATCAAGTAGAG........................................................................ 23 1 2.00 0.00 0.00 2.00 0.00 ................................TTGGACAAATATCAAGTAGAT........................................................................ 21 1 2.00 0.00 0.00 2.00 0.00 ......................................................................TTATTGTTATTTGTCGTTGAAC................................. 22 1 2.00 0.00 0.00 1.00 1.00 ..............................TCTTGGACAAATATCAAGTAGATAT...................................................................... 25 1 2.00 0.00 0.00 2.00 0.00 ................................................CAGATTATTATGATACAT........................................................... 18 1 1.00 0.00 0.00 1.00 0.00 ..............................TCTTGGACAAATATCAAGTAG.......................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..............................TCTTGGACAAATATCAAGTAGG......................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 ................................TTGGACAAATATCAAGTAGATTA...................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGGAC................................. 22 1 1.00 0.00 0.00 1.00 0.00 ......................................................................TTATTGCTATTTGTCCTTGAAC................................. 22 1 1.00 0.00 0.00 0.00 1.00 .....................................................................TTTATTGTTATTTGTCCTTGAG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 .....................................................................TTTATTGTTATTTGTCCTTGAAC................................. 23 1 1.00 0.00 0.00 0.00 1.00 .....................................................................TTTATTTTTATTTGTCCTTGAA.................................. 22 1 1.00 0.00 0.00 0.00 1.00 ......................................................................TTATTGTTATTTGCCCTTGAAC................................. 22 1 1.00 0.00 1.00 0.00 0.00 .....................................................................TTTATTGTTATTTGTCCTTG.................................... 20 1 1.00 0.00 1.00 0.00 0.00 .......................................................................TATTGTTATTTGTCCTTGAACT................................ 22 1 1.00 0.00 0.00 1.00 0.00 ..............................TCTTGGACAAATATCGAGTAGAT........................................................................ 23 1 1.00 0.00 0.00 1.00 0.00 ......................................................................TTATTGTTAxTTGTCCTTGAAC................................. 21 1 1.00 0.00 0.00 1.00 0.00 ..............................TCATGGACAAATATCAAGTAGATA....................................................................... 24 1 1.00 0.00 0.00 1.00 0.00 ...............................CTTGGACAAATATCAAGTAGATT....................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ..............................TCTTGGGCAAATATCAAGTAGAT........................................................................ 23 1 1.00 0.00 0.00 1.00 0.00 ......................................................................TTATCGTTATTTGTCCTTGAAC................................. 22 1 1.00 0.00 0.00 1.00 0.00 ..............................TCTTGGGCAAATATCAAGTAGA......................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGAACAAAA............................. 26 1 1.00 0.00 0.00 1.00 0.00 ......................................................................TTATTGTTATTGGTCCTTGAAC................................. 22 1 1.00 0.00 0.00 1.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGAAAA................................ 23 1 1.00 1.00 0.00 0.00 0.00 ..............................TCTTGGACAAATATCAACTAGAT........................................................................ 23 1 1.00 0.00 0.00 0.00 1.00
4	chrX:3274541-3274667 -	81.02	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTG----TTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TATCAAGTTAAAAAACGAAATCATGCTAGATCATTAACAAGTATCATGTAAATTGAATTTTTGTATATATCAATTACATGTTATTCGTTCTTGAACTTAATGGTTTTAGAGCTGCAAGAAAAATTGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .................................TTAACAAGTATCATGTAAATTG........................................................................ 22 1 168.00 3.00 7.00 143.00 15.00 .......................................................................AATTACATGTTATTCGTTCTTG.................................. 22 1 80.00 0.00 0.00 62.00 18.00 ...............................................................................GTTATTCATTCTTGAACA.............................. 18 1 5.00 0.00 0.00 2.00 3.00 .................................TTAACAAGTATCATGTAAATTGA....................................................................... 23 1 5.00 3.00 0.00 2.00 0.00 .................................TTAACAAGTATCATGTAAATTGAA...................................................................... 24 1 4.00 4.00 0.00 0.00 0.00 .......................................................................AATTACATGTTATTCGTTCTGG.................................. 22 1 4.00 0.00 0.00 3.00 1.00 .......................................................................AACTACATGATATTCGTTCTTG.................................. 22 2 2.00 0.00 0.00 1.50 0.50 .................................TTAACAAGTATCATGTAAATTGG....................................................................... 23 1 2.00 0.00 0.00 2.00 0.00 .......................................................................AATTACACGATATTCGTTCTTG.................................. 22 2 1.00 0.00 0.00 0.00 1.00 .............................................................................ACGTTATTCATTCTTGAAC............................... 19 1 2.00 0.00 0.00 1.00 1.00 .......................................................................AATTACATGTTATTCGTTCTTGT................................. 23 1 2.00 0.00 0.00 2.00 0.00 .................................TTAACAAGTATCATGTAAATTGAAA..................................................................... 25 1 2.00 2.00 0.00 0.00 0.00 .................................TTAACAAGTATCATGTAAATT......................................................................... 21 1 2.00 0.00 2.00 0.00 0.00 ..............................................................................CGTTATTCATTCTTGAAC............................... 18 1 2.00 0.00 0.00 0.00 2.00 .......................................................................AATTACATGTTATTCGTTCT.................................... 20 1 1.00 0.00 1.00 0.00 0.00 .................................TTAGCGAGTATCATGTAAATTGAA...................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 .................................TTAACAATTATCATGTAAATTG........................................................................ 22 1 1.00 0.00 0.00 1.00 0.00 .......................................................................AATTACATATTATTCGTTCTTG.................................. 22 1 1.00 0.00 0.00 0.00 1.00 .................................TTAATAAGTATCATGTAAATTG........................................................................ 22 1 1.00 0.00 0.00 1.00 0.00 .................................TTAACAAGTATCATGTAAATGG........................................................................ 22 1 1.00 0.00 0.00 1.00 0.00 .................................TTCACAAGTATCATGTAAATTG........................................................................ 22 1 1.00 0.00 0.00 0.00 1.00 .....................................CAAGTATCATGTAAATTGA....................................................................... 19 2 0.50 0.00 0.00 0.00 0.50 .................................TTAACAAGTATCATGTAAATTGAC...................................................................... 24 1 1.00 0.00 0.00 0.00 1.00 .................................TTAACAAGTATCATGTAAATTT........................................................................ 22 1 1.00 1.00 0.00 0.00 0.00 .........................................................................................................TAGGAGCTGCAAGAAAAA.... 18 1 1.00 0.00 0.00 0.00 1.00 .................................TTAACAAGTATCATGTAAA........................................................................... 19 1 1.00 0.00 0.00 1.00 0.00
6	chrX:3274162-3274263 -	60.33	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT C---------------------ATACCAGTCCTTGAAAAAATTACTAATTGATTGTTTTTATACATCAATCATTGGCTGTTTTTCCTTTATCCAAATGGTTTTAGCGCTGCAACCAAAATTGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .................................................TGATTATTTTTATATATC........................................................ 18 1 1.00 0.00 0.00 0.00 1.00 .....................................AAAACTAxTAATTGATTGT................................................................... 18 1 1.00 0.00 1.00 0.00 0.00
8	chrX:3274814-3274961 -	50.82	TATCAAGTTAA----------------------AAAACGAAATCATGTTAGATCCTGGAC-AAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGAT-A-TTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT GGTCAAGTATGACAAAAAAATATTTGTGGTATGAAAATACAGCCATGCTGGTCCGTGGAAAAAATTTCAAATGTATTGTTTTTATACATCAATCACTTTGTTTTTTTTTCCATGAACCAAATGGTTTTAGTGCTGCAACCAAAATTGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ............................................................................................TCACTTTGTTTTTTTTTCCATG.................................. 22 1 189.00 1.00 5.00 149.00 34.00 ............................................................................................TCACTTTGxTTTTTTTTCCATG.................................. 21 1 11.00 0.00 0.00 6.00 5.00 ............................................................................................TCACTTTGTTTTTTTTTCCATGA................................. 23 1 3.00 2.00 0.00 0.00 1.00 ............................................................................................TCACTTTGxxTTTTTTTCCATG.................................. 20 1 2.00 0.00 0.00 1.00 1.00 ............................................................................................TCACTTTGTTTTTTTTTCCATGT................................. 23 1 1.00 0.00 0.00 1.00 0.00 .............................................................................................CACTTTGTTTTTTTTTCCATG.................................. 21 1 1.00 0.00 0.00 1.00 0.00 ............................................................................................TCACTTTGxTTTTTTTTCCATGA................................. 22 1 1.00 0.00 0.00 0.00 1.00 ............................................................................................TCACTTTGTTTTTTTTTCCATGC................................. 23 1 1.00 0.00 0.00 0.00 1.00 ...........................................................................................ATCACTTTGTTTTTTTTTCCATG.................................. 23 1 1.00 0.00 0.00 1.00 0.00 ............................................................................................TCACTTTGTTTTTTTTTTCATG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ............................................................................................TAACTTTGTTTTTTTTTCCATG.................................. 22 1 1.00 0.00 0.00 1.00 0.00 ............................................................................................TCACTTTGTTTTTTTTCC...................................... 18 1 1.00 0.00 0.00 1.00 0.00 ............................................................................................TCACTTTGTTTTTTTTTCCATGAAA............................... 25 1 1.00 0.00 0.00 1.00 0.00
7	chrX:3274396-3274524 -	48.64	TATCAAGT-TAAAAAACGAAATCATGTTAGATCCTGGACAAATA-TGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACT--AAATGGTTTTAGAGCTGCAAGAAA----AATTGT TTACAAATATTATTCATGATTACCATTCATATCCTTCACAGTGTTCCTAATAGATAGTTATTATTACACT--ATCTTTAGCAACACTTTTGAGATAAGGATGGG-ATAACGCTGCAAGAATTATAAACATT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ..................................TTCACAGTGTTCCTAATAGATAGT......................................................................... 24 1 191.00 45.00 3.00 65.00 78.00 ..................................TTCACAGTGTTCCTAATAGATAG.......................................................................... 23 1 123.00 49.00 1.00 65.00 8.00 ..................................TTCACAGTGTTCCTAATAGATAGG......................................................................... 24 1 8.00 1.00 0.00 4.00 3.00 ..................................TTCACAGTGTTCCTAATAGATAGTAA....................................................................... 26 1 7.00 7.00 0.00 0.00 0.00 ..................................TTCACAGTGTTCCTAATAGAT............................................................................ 21 1 5.00 4.00 0.00 1.00 0.00 ..................................TTCACAGTGTTCCTAATAGATA........................................................................... 22 1 5.00 2.00 0.00 3.00 0.00 ..................................TTCACAGTCTTCCTAATAGATAGT......................................................................... 24 1 4.00 0.00 0.00 0.00 4.00 ..................................TTCACAGTGTTCCTAATAGATAGTA........................................................................ 25 1 4.00 2.00 0.00 2.00 0.00 ..................................TTCACAGTGTTCCTAATAGATGG.......................................................................... 23 1 2.00 1.00 0.00 0.00 1.00 .....................................................................T--ATCTTTAGCAACACTTTTGAG...................................... 22 1 2.00 0.00 0.00 1.00 1.00 ..................................TTCACAGTGTTCCTAATAGATAGA......................................................................... 24 1 2.00 2.00 0.00 0.00 0.00 ..................................TTCACAGTGTTCCTAATAGATAGC......................................................................... 24 1 2.00 0.00 0.00 1.00 1.00 ...................................TCACAGTGTTCCTAATAGATAG.......................................................................... 22 1 2.00 0.00 0.00 2.00 0.00 ..................................TTCACAGGGTTCCTTATAGATAGT......................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 ..................................TTCATAGTGTTCCTAATAGATAGTA........................................................................ 25 1 1.00 0.00 0.00 1.00 0.00 ..................................TTCACAGTGTTCCTAATAGAGAG.......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 ..................................TTCATAGTGTTCCTAATAGATAG.......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 ..................................TTCACAGTGGTCCTGATAGATAG.......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 ....................................CACAGTGTTCCTAATAGATAG.......................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 .....................................................................T--ATCTTTAGCAACACTTTTGA....................................... 21 1 1.00 1.00 0.00 0.00 0.00 ...................................TCACAGGGTTCCTAATAGATAGT......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 ..................................TTCACAGTGTTCCTGATAGATAG.......................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 ..................................TTCAGAGTGTTCTTAATAGATAG.......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 ..................................TTCACAGTGTTCCTACTAGATAGT......................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 ..................................TTCACAxxGTTCCTAATAGATAGT......................................................................... 22 1 1.00 0.00 0.00 0.00 1.00 ..................................TTCACAGTGTTCCTAATAGATAGTAAA...................................................................... 27 1 1.00 1.00 0.00 0.00 0.00 ..................................TTGACAGTGTTCCTAATAGATAG.......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 ..................................TTCACAGTTTTCCTAATAGATAGT......................................................................... 24 1 1.00 0.00 0.00 0.00 1.00 ..................................TTCACAGCGTTCCTAATAGATAG.......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 .....................................................................T--ATCTTTAGCAACACTTTTGAGG..................................... 23 1 1.00 0.00 0.00 0.00 1.00 ..................................TTCACAGGGCTCCTAATAGATAG.......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 ...................................TCACAGTGTTCCTAATAGATAGT......................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 ..................................TTAACAGTGTTCCTAATAGATAGT......................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 .............................................................................................ATAAGGATGGG-ATAACGCTG................. 20 1 1.00 1.00 0.00 0.00 0.00 ..................................TTCAAAGTGTTCCTAATAGATAG.......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 ..................................TTCACAGTGTTGCTAATAGATAGT......................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 ..................................TTCTCAGTGTTCCTAATAGATAGT......................................................................... 24 1 1.00 0.00 0.00 1.00 0.00 ..................................TTCACAGTGTTCCTAATAGATAA.......................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 ..................................TTCACAGTGTTCCTAATAGATAAT......................................................................... 24 1 1.00 1.00 0.00 0.00 0.00
1	chrX:3273767-3273880 -	47.87	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAA-ATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TTACAAATTATT-------ACCA-TTCATATCCTGGAGAGTGTTCTTAATAGTCTGTTATTATTACACAAACTTTGGGAATACTTTCGAGATATG-ATGG-CATAACGCTGCAAAAATAAGTAT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ....................................................................AAACTTTGGGAATACTTTCGAG.................................. 22 1 14.00 12.00 0.00 2.00 0.00 .................................TGGAGAGTGTTCTTAATAGTCT..................................................................... 22 1 8.00 8.00 0.00 0.00 0.00 .................................TGGAGAGTGTTCTTAATAGTCTG.................................................................... 23 1 6.00 0.00 0.00 6.00 0.00 ....................................................................AAACTTTGGGAATACTTTCGAGA................................. 23 1 5.00 1.00 0.00 3.00 1.00 .....................................................................AACTTTGGGAATACTTTCGAGG................................. 22 1 2.00 0.00 0.00 2.00 0.00 .................................TGGAGAGTGTTCTTAATAGTCTGT................................................................... 24 1 1.00 0.00 0.00 1.00 0.00 .................................TGGAGAGTGTTCTTAATAGTCTGA................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 ....................................................................AAACTTTGGGAATACTTTCGAGG................................. 23 1 1.00 0.00 0.00 1.00 0.00 .....................................................................AACTTTGGGAATACTTTCGAGAA................................ 23 1 1.00 0.00 0.00 1.00 0.00 .................................TTGAGAGTGTTCTTAATAGTCTGG................................................................... 24 1 1.00 0.00 0.00 1.00 0.00 .................................TGGAGAGTGTTCTTACTAGTCT..................................................................... 22 1 1.00 1.00 0.00 0.00 0.00

droSec1 - 7 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
7	super_4:2466024-2466146 +	86.38	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TATCAAGTTAAAAAACGAAATCATGCTAGATCTTGGACAAATATCAAGTAGATTATTTTTATACATCAATTTATTGTTATTTGTCCTTGAACTTAATTGTTTTACAGCTGCAAAAAAAATTGT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ......................................................................TTATTGTTATTTGTCCTTGAAC............................... 22 2 16.50 7.50 5.50 3.50 ......................................................................TTATTGTTATTTGTCCTTGAA................................ 21 2 9.00 6.50 0.00 2.50 ......................................................................TTATTGTTATTTGTCCTTGAAA............................... 22 2 3.50 3.00 0.00 0.50 ......................................................................TTATTGTTATTTGTCCTTGA................................. 20 2 2.50 1.50 0.00 1.00 ......................................................................TTATTGTTATTTGTCCTTGAACT.............................. 23 2 2.00 1.50 0.00 0.50 ..............................TCTTGGACAAATATCAAGTAGA....................................................................... 22 2 2.00 1.50 0.00 0.50 .....................................................................TTTATTGTTATTTGTCCTTGAA................................ 22 2 1.00 0.50 0.50 0.00 ......................................................................TTATTGTTATTTGTCCTTGAACA.............................. 23 2 1.00 0.00 0.50 0.50 ................................TTGGACAAATATCAAGTAGATT..................................................................... 22 2 1.00 0.50 0.50 0.00 ......................................................................TTATTGTTATTTGTCCTTGAAT............................... 22 2 1.00 1.00 0.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGT................................. 20 2 1.00 1.00 0.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGAACTA............................. 24 2 0.50 0.50 0.00 0.00 ..................................................GATTATTTTTGTATATCA....................................................... 18 3 0.33 0.00 0.33 0.00 ............................................CAAGTAGATGATTTATAT............................................................. 18 2 0.50 0.00 0.50 0.00 ..............................TCTTxGACAAATATCAAGTAGAT...................................................................... 22 2 0.50 0.50 0.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGTAT............................... 22 2 0.50 0.50 0.00 0.00 ......................................................................TTATTGTTATTCGTCCTTGAAC............................... 22 2 0.50 0.50 0.00 0.00 .......................................................................TATTGTTATTTGTCCTTGAAC............................... 21 2 0.50 0.50 0.00 0.00 ................................TTGGACAAATATCAAGTACAT...................................................................... 21 2 0.50 0.50 0.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGAACC.............................. 23 2 0.50 0.50 0.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGAAAA.............................. 23 2 0.50 0.50 0.00 0.00 ........................GCTAGATCTTGAAGAAAT................................................................................. 18 2 0.50 0.00 0.50 0.00 ........................................................................ATTGTTATTTGTCCTTGAAC............................... 20 2 0.50 0.00 0.50 0.00 ..............................TCTTGGACAAATATCAAGT.......................................................................... 19 2 0.50 0.00 0.50 0.00 ......................................................................TTATTGTTATTTGTCCTTTAAA............................... 22 2 0.50 0.50 0.00 0.00
4	super_4:2465384-2465506 +	86.38	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TATCAAGTTAAAAAACGAAATCATGCTAGATCTTGGACAAATATCAAGTAGATTATTTTTATACATCAATTTATTGTTATTTGTCCTTGAACTTAATTGTTTTACAGCTGCAAAAAAAATTGT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ......................................................................TTATTGTTATTTGTCCTTGAAC............................... 22 2 16.50 7.50 5.50 3.50 ......................................................................TTATTGTTATTTGTCCTTGAA................................ 21 2 9.00 6.50 0.00 2.50 ......................................................................TTATTGTTATTTGTCCTTGAAA............................... 22 2 3.50 3.00 0.00 0.50 ......................................................................TTATTGTTATTTGTCCTTGA................................. 20 2 2.50 1.50 0.00 1.00 ......................................................................TTATTGTTATTTGTCCTTGAACT.............................. 23 2 2.00 1.50 0.00 0.50 ..............................TCTTGGACAAATATCAAGTAGA....................................................................... 22 2 2.00 1.50 0.00 0.50 .....................................................................TTTATTGTTATTTGTCCTTGAA................................ 22 2 1.00 0.50 0.50 0.00 ......................................................................TTATTGTTATTTGTCCTTGAACA.............................. 23 2 1.00 0.00 0.50 0.50 ................................TTGGACAAATATCAAGTAGATT..................................................................... 22 2 1.00 0.50 0.50 0.00 ......................................................................TTATTGTTATTTGTCCTTGAAT............................... 22 2 1.00 1.00 0.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGT................................. 20 2 1.00 1.00 0.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGAACTA............................. 24 2 0.50 0.50 0.00 0.00 ..................................................GATTATTTTTGTATATCA....................................................... 18 3 0.33 0.00 0.33 0.00 ............................................CAAGTAGATGATTTATAT............................................................. 18 2 0.50 0.00 0.50 0.00 ..............................TCTTxGACAAATATCAAGTAGAT...................................................................... 22 2 0.50 0.50 0.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGTAT............................... 22 2 0.50 0.50 0.00 0.00 ......................................................................TTATTGTTATTCGTCCTTGAAC............................... 22 2 0.50 0.50 0.00 0.00 .......................................................................TATTGTTATTTGTCCTTGAAC............................... 21 2 0.50 0.50 0.00 0.00 ................................TTGGACAAATATCAAGTACAT...................................................................... 21 2 0.50 0.50 0.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGAACC.............................. 23 2 0.50 0.50 0.00 0.00 ......................................................................TTATTGTTATTTGTCCTTGAAAA.............................. 23 2 0.50 0.50 0.00 0.00 ........................GCTAGATCTTGAAGAAAT................................................................................. 18 2 0.50 0.00 0.50 0.00 ........................................................................ATTGTTATTTGTCCTTGAAC............................... 20 2 0.50 0.00 0.50 0.00 ..............................TCTTGGACAAATATCAAGT.......................................................................... 19 2 0.50 0.00 0.50 0.00 ......................................................................TTATTGTTATTTGTCCTTTAAA............................... 22 2 0.50 0.50 0.00 0.00
5	super_4:2465626-2465748 +	83.98	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TATGAAGTTAAAAAACGAAATCATGCTAGATCAAGAACAAATATCATGTAAATTGCTTTTTTACATCAAATACAGGATATTCGTTCTTGAGCTTAATGGTTATAGAGCTGCAAGAAAAATTGT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ...................................................................AAATACAGGATATTCGTTCTT................................... 21 2 85.00 59.50 10.00 15.50 ...................................................................AAATACAGGATATTCGTTCTTG.................................. 22 2 64.50 57.50 4.50 2.50 ....................................................................AATACAGGATATTCGTTCTTGA................................. 22 2 29.00 25.00 2.50 1.50 ....................................................................AATACAGGATATTCGTTCTTG.................................. 21 2 29.00 26.00 1.50 1.50 ...................................................................AAATACAGGATATTCGTTCTTGT................................. 23 2 13.50 11.50 0.00 2.00 ......................................................................TACAGGATATTCGTTCTTGAGC............................... 22 2 11.00 4.00 5.50 1.50 ....................................................................AATACAGGATATTCGTTCTTGT................................. 22 2 7.00 6.00 0.50 0.50 ...................................................................AAATACAGGATATTCGTTCT.................................... 20 2 5.50 3.00 0.00 2.50 ....................................................................AATACAGGATATTCGTTCTT................................... 20 2 4.50 3.00 0.00 1.50 ....................................................................AATACAGGATATTCGTTCTTGAA................................ 23 2 4.00 3.00 0.50 0.50 ...................................................................AAATACAGGATATTCGTTCTTT.................................. 22 2 3.50 3.50 0.00 0.00 ....................................................................AATACAGGATATTCGTTCTTGAT................................ 23 2 2.50 2.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTCTTGTA................................ 24 2 2.00 2.00 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAG................................ 21 2 1.50 1.00 0.00 0.50 ...................................................................AAATACAGGATATTCGTTCTTGA................................. 23 2 1.50 1.50 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAGTT.............................. 23 2 1.00 0.50 0.00 0.50 ...................................................................................................GTAxGGAGCTGCAAGAAAA..... 18 2 1.00 0.00 1.00 0.00 ....................................................................AATACAGGATATTCGTTCTTGAG................................ 23 2 1.00 1.00 0.00 0.00 ....................................................................AATACAGGATATTCGTTCTTGAAA............................... 24 2 1.00 0.50 0.00 0.50 ......................................................................TACAGGATATTCGTTCTTGAGTTT............................. 24 2 1.00 1.00 0.00 0.00 ...................................................................AAATACAGGACATTCGTTCTTG.................................. 22 2 1.00 1.00 0.00 0.00 ...................................................................AGATACAGGATATTCGTTCTT................................... 21 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTCTTGAT................................ 24 2 0.50 0.50 0.00 0.00 ...................................................................AAATCCAGGATATTCGTTCTT................................... 21 2 0.50 0.50 0.00 0.00 ....................................................................AATACAGGATATTCGCTCTTGA................................. 22 2 0.50 0.50 0.00 0.00 ......................................................................................................TAGAGCTGCCAGAAAAGT... 18 2 0.50 0.00 0.50 0.00 .........................................................TCTTTACATAAAATACAGGATATTCG........................................ 26 2 0.50 0.00 0.50 0.00 ......................................................................TACAGGATATTCGTTCTTGAGTA.............................. 23 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTCCTGT................................. 23 2 0.50 0.50 0.00 0.00 ....................................................................ACTACAGGATATTCGTTCTCG.................................. 21 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGCTGTTG.................................. 22 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTTTTG.................................. 22 2 0.50 0.50 0.00 0.00 ....................................................................AATACAGGATATTCGTTA..................................... 18 2 0.50 0.00 0.00 0.50 ...................................................................AAATACAGGATATTCGTTGTTG.................................. 22 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTATT................................... 21 2 0.50 0.50 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAGCTTTT........................... 26 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATCTTCGTTCTTG.................................. 22 2 0.50 0.50 0.00 0.00 .......................................................................................................AGAGCTGGAAGAAAAATC.. 18 2 0.50 0.00 0.50 0.00 ......................................................................TACAGGATATTCGTTCTTGAGT............................... 22 2 0.50 0.50 0.00 0.00 ....................................................................AATACAGGATATTCGTTCGTGA................................. 22 2 0.50 0.50 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAGTTTT............................ 25 2 0.50 0.00 0.00 0.50 ....................................................................AATACGGGATATTCGTTCTTG.................................. 21 2 0.50 0.00 0.50 0.00 ...................................................................AAATACAGGATATTCGTTCTTGAA................................ 24 2 0.50 0.50 0.00 0.00 ......................ATGCTxGATGAAGAACAAA.................................................................................. 18 2 0.50 0.00 0.50 0.00 ...................................................................AAATACAGGATATTCGTTATTGT................................. 23 2 0.50 0.50 0.00 0.00 ......................................................................TACTGGATATTCGTTCTTGAGC............................... 22 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATCCGTTCTTGT................................. 23 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTC..................................... 19 2 0.50 0.00 0.00 0.50 ...................................................................AAATACAGGATATTCGTTGTT................................... 21 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTCTTGAAT............................... 25 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGCTGTT................................... 21 2 0.50 0.50 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAGTAT............................. 24 2 0.50 0.50 0.00 0.00 ...................................................................AAATxCAGGATATTCGTTCTTGAA................................ 23 2 0.50 0.50 0.00 0.00 .....................................................................ATACAGGATATTCGTTCTT................................... 19 2 0.50 0.00 0.50 0.00 ....................................................................AATACAGGATATTCGTTGTTGA................................. 22 2 0.50 0.50 0.00 0.00 ....................................................................AATACAGGATATTCGTTCTTGAGC............................... 24 2 0.50 0.00 0.50 0.00 ......................................................................TACAGGATATTCGTTCTTGAGCTA............................. 24 2 0.50 0.50 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAGCTT............................. 24 2 0.50 0.50 0.00 0.00 ....................................................................AATACAGGATATTCGTTCTTAA................................. 22 2 0.50 0.50 0.00 0.00
2	super_4:2464986-2465108 +	83.18	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TATGAAGTTAAAAAACGAAATCATGCTAGATCAAGAACAAATATCATGTAAATTGCTTTTTTACATAAAATACAGGATATTCGTTCTTGAGCTTAATGGTTATAGAGCTGCAAGAAAAATTGT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ...................................................................AAATACAGGATATTCGTTCTT................................... 21 2 85.00 59.50 10.00 15.50 ...................................................................AAATACAGGATATTCGTTCTTG.................................. 22 2 64.50 57.50 4.50 2.50 ....................................................................AATACAGGATATTCGTTCTTGA................................. 22 2 29.00 25.00 2.50 1.50 ....................................................................AATACAGGATATTCGTTCTTG.................................. 21 2 29.00 26.00 1.50 1.50 ...................................................................AAATACAGGATATTCGTTCTTGT................................. 23 2 13.50 11.50 0.00 2.00 ......................................................................TACAGGATATTCGTTCTTGAGC............................... 22 2 11.00 4.00 5.50 1.50 ....................................................................AATACAGGATATTCGTTCTTGT................................. 22 2 7.00 6.00 0.50 0.50 ...................................................................AAATACAGGATATTCGTTCT.................................... 20 2 5.50 3.00 0.00 2.50 ....................................................................AATACAGGATATTCGTTCTT................................... 20 2 4.50 3.00 0.00 1.50 ....................................................................AATACAGGATATTCGTTCTTGAA................................ 23 2 4.00 3.00 0.50 0.50 ...................................................................AAATACAGGATATTCGTTCTTT.................................. 22 2 3.50 3.50 0.00 0.00 ....................................................................AATACAGGATATTCGTTCTTGAT................................ 23 2 2.50 2.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTCTTGTA................................ 24 2 2.00 2.00 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAG................................ 21 2 1.50 1.00 0.00 0.50 ...................................................................AAATACAGGATATTCGTTCTTGA................................. 23 2 1.50 1.50 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAGTT.............................. 23 2 1.00 0.50 0.00 0.50 ...................................................................................................GTAxGGAGCTGCAAGAAAA..... 18 2 1.00 0.00 1.00 0.00 ....................................................................AATACAGGATATTCGTTCTTGAG................................ 23 2 1.00 1.00 0.00 0.00 ....................................................................AATACAGGATATTCGTTCTTGAAA............................... 24 2 1.00 0.50 0.00 0.50 ......................................................................TACAGGATATTCGTTCTTGAGTTT............................. 24 2 1.00 1.00 0.00 0.00 ...................................................................AAATACAGGACATTCGTTCTTG.................................. 22 2 1.00 1.00 0.00 0.00 ...................................................................AGATACAGGATATTCGTTCTT................................... 21 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTCTTGAT................................ 24 2 0.50 0.50 0.00 0.00 ...................................................................AAATCCAGGATATTCGTTCTT................................... 21 2 0.50 0.50 0.00 0.00 ............................................................TTACATAAAATAAAGTAT............................................. 18 1 1.00 0.00 1.00 0.00 ....................................................................AATACAGGATATTCGCTCTTGA................................. 22 2 0.50 0.50 0.00 0.00 ......................................................................................................TAGAGCTGCCAGAAAAGT... 18 2 0.50 0.00 0.50 0.00 .........................................................TCTTTACATAAAATACAGGATATTCG........................................ 26 2 0.50 0.00 0.50 0.00 ......................................................................TACAGGATATTCGTTCTTGAGTA.............................. 23 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTCCTGT................................. 23 2 0.50 0.50 0.00 0.00 ....................................................................ACTACAGGATATTCGTTCTCG.................................. 21 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGCTGTTG.................................. 22 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTTTTG.................................. 22 2 0.50 0.50 0.00 0.00 ....................................................................AATACAGGATATTCGTTA..................................... 18 2 0.50 0.00 0.00 0.50 ...................................................................AAATACAGGATATTCGTTGTTG.................................. 22 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTATT................................... 21 2 0.50 0.50 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAGCTTTT........................... 26 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATCTTCGTTCTTG.................................. 22 2 0.50 0.50 0.00 0.00 .......................................................................................................AGAGCTGGAAGAAAAATC.. 18 2 0.50 0.00 0.50 0.00 ......................................................................TACAGGATATTCGTTCTTGAGT............................... 22 2 0.50 0.50 0.00 0.00 ....................................................................AATACAGGATATTCGTTCGTGA................................. 22 2 0.50 0.50 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAGTTTT............................ 25 2 0.50 0.00 0.00 0.50 ....................................................................AATACGGGATATTCGTTCTTG.................................. 21 2 0.50 0.00 0.50 0.00 ...................................................................AAATACAGGATATTCGTTCTTGAA................................ 24 2 0.50 0.50 0.00 0.00 ......................ATGCTxGATGAAGAACAAA.................................................................................. 18 2 0.50 0.00 0.50 0.00 ...............................................................CATAAAATAAAGTATATT.......................................... 18 9 0.11 0.00 0.11 0.00 ...................................................................AAATACAGGATATTCGTTATTGT................................. 23 2 0.50 0.50 0.00 0.00 ......................................................................TACTGGATATTCGTTCTTGAGC............................... 22 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATCCGTTCTTGT................................. 23 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTC..................................... 19 2 0.50 0.00 0.00 0.50 ...................................................................AAATACAGGATATTCGTTGTT................................... 21 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGTTCTTGAAT............................... 25 2 0.50 0.50 0.00 0.00 ...................................................................AAATACAGGATATTCGCTGTT................................... 21 2 0.50 0.50 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAGTAT............................. 24 2 0.50 0.50 0.00 0.00 ...................................................................AAATxCAGGATATTCGTTCTTGAA................................ 23 2 0.50 0.50 0.00 0.00 .....................................................................ATACAGGATATTCGTTCTT................................... 19 2 0.50 0.00 0.50 0.00 ....................................................................AATACAGGATATTCGTTGTTGA................................. 22 2 0.50 0.50 0.00 0.00 ....................................................................AATACAGGATATTCGTTCTTGAGC............................... 24 2 0.50 0.00 0.50 0.00 ......................................................................TACAGGATATTCGTTCTTGAGCTA............................. 24 2 0.50 0.50 0.00 0.00 ......................................................................TACAGGATATTCGTTCTTGAGCTT............................. 24 2 0.50 0.50 0.00 0.00 ....................................................................AATACAGGATATTCGTTCTTAA................................. 22 2 0.50 0.50 0.00 0.00
1	super_4:2464715-2464839 +	68.92	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGAC-AAATATGAAGTAAATTGTTTTTATGCATCAATTACT-TGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TTTGTGGTATAAAAATAAAGCCATGCTGGTCCTTGGAAAAAATTTCTTATTGATTGTTTTTATACATCAATCACTGTGTTTTTTTTCCATGAACCAAATGGTTTTAGTGCTGCAACCAAAATTGT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head .......................................................................CACTGTGTTTTTTTTCCATGAA................................ 22 1 4.00 4.00 0.00 0.00 .......................................................................CACTGTGTTTTTTTTCCATGA................................. 21 1 3.00 2.00 1.00 0.00 ................................TTGGAAAAAATTTCTTATTGATT...................................................................... 23 1 2.00 1.00 1.00 0.00 ....................................................................................................GTTTTTGTGCxGCAACCAAA..... 19 1 1.00 0.00 1.00 0.00 ...............................CTTGGAAAAAATTTCTTATTGATA...................................................................... 24 1 1.00 0.00 1.00 0.00 .......................................................................CACTGTGTTTTTTTTCCATGAG................................ 22 1 1.00 1.00 0.00 0.00 .......................................................................CACTGTGTTTTTTTTCCATGAAA............................... 23 1 1.00 1.00 0.00 0.00 ........................................................................ACTGTGTTTTTTTTCCATGAA................................ 21 1 1.00 1.00 0.00 0.00 .......................................................................CACTGTGTTTTTTTTCCATGAAAA.............................. 24 1 1.00 1.00 0.00 0.00
3	super_4:2465135-2465249 +	50.59	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAAT-ATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TTACAAATTATT--------ACCATTCATATCCTGGACAGTGTTCCTAATAGTCTGTTATTATTACACAAACCTTGGGAATACTTTCGAGATAAGGATGGCA-TAACGCTGCAAAAATAAGTAT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ....................................................................AAACCTTGGGAATACTTTCGAG.................................. 22 2 434.00 384.50 29.00 20.50 .....................................................................AACCTTGGGAATACTTTCGAG.................................. 21 2 181.50 171.00 2.00 8.50 ....................................................................AAACCTTGGGAATACTTTCGA................................... 21 2 79.50 72.00 4.00 3.50 .....................................................................AACCTTGGGAATACTTTCGAGT................................. 22 2 49.50 44.50 2.50 2.50 ....................................................................AAACCTTGGGAATACTTTCG.................................... 20 2 28.00 25.50 1.00 1.50 .....................................................................AACCTTGGGAATACTTTCGAGA................................. 22 2 26.50 24.00 1.00 1.50 .................................TGGACAGTGTTCCTAATAGTCTGT................................................................... 24 1 35.00 13.00 12.00 10.00 .....................................................................AACCTTGGGAATACTTTCGA................................... 20 2 13.00 12.50 0.00 0.50 ....................................................................AAACCTTGGGAATACTTTCGAGA................................. 23 2 10.50 8.50 1.00 1.00 .....................................................................AACCTTGGGAATACTTTCGAGTTT............................... 24 2 5.00 5.00 0.00 0.00 ....................................................................AAACCTTGGGAATACTTTAGAG.................................. 22 2 3.50 3.50 0.00 0.00 ....................................................................AAACCTTGGGAATACTTTGGAG.................................. 22 2 3.00 3.00 0.00 0.00 .....................................................................AACCTTGGGAATACTTTCGAGC................................. 22 2 3.00 3.00 0.00 0.00 ....................................................................AAACCTTGGGAATACTTTTGAG.................................. 22 2 3.00 3.00 0.00 0.00 ....................................................................AAACCTTGGGAATACTTTCGAGT................................. 23 2 3.00 3.00 0.00 0.00 .....................................................................AACCTTGGGAATACTTTCGAGTAA............................... 24 2 2.50 2.50 0.00 0.00 .....................................................................AACCTTGGGAATACTTTCAAG.................................. 21 2 2.50 2.50 0.00 0.00 .....................................................................AACCTTGGGAATACTTTCGAGTT................................ 23 2 2.50 2.50 0.00 0.00 ......................................................................ACCTTGGGAATACTTTCGAG.................................. 20 2 2.00 2.00 0.00 0.00 .........................................................................................GATAAGGATGGCA-AGACGCT.............. 20 2 2.00 1.00 1.00 0.00 ....................................................................AAACCTTGGGAATACTTTCGCG.................................. 22 2 1.50 1.50 0.00 0.00 ....................................................................AAACCTTGGGAATACTTTCTAG.................................. 22 2 1.50 1.50 0.00 0.00 ....................................................................AAACCTTGGGAATACTTTCCAG.................................. 22 2 1.50 1.50 0.00 0.00 ....................................................................ACACCTTGGGAATACTTTCGAG.................................. 22 2 1.50 1.00 0.50 0.00
6	super_4:2465832-2465960 +	45.52	TATCAAGTTAAAAAA------CGAAATCATGT----TAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTA--AATGGTTTTAGAGCTGCAAGAAAAATTGT CACAAACCTTGGGAATACTTTCGAGATAAGGATGGCATAACGCTGCAAAAATAAGTATAAACATATCCCTATCCATCATCAAATCAAT-----CCATTAATCTAAGATTGATTTCAGTTCTGAAAAGAGTGAT-C Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ...AAACCTTGGGAATACTTTCGAG.............................................................................................................. 22 2 434.00 384.50 29.00 20.50 ....AACCTTGGGAATACTTTCGAG.............................................................................................................. 21 2 181.50 171.00 2.00 8.50 ...AAACCTTGGGAATACTTTCGA............................................................................................................... 21 2 79.50 72.00 4.00 3.50 ....AACCTTGGGAATACTTTCGAGT............................................................................................................. 22 2 49.50 44.50 2.50 2.50 ...AAACCTTGGGAATACTTTCG................................................................................................................ 20 2 28.00 25.50 1.00 1.50 ....AACCTTGGGAATACTTTCGAGA............................................................................................................. 22 2 26.50 24.00 1.00 1.50 ....AACCTTGGGAATACTTTCGA............................................................................................................... 20 2 13.00 12.50 0.00 0.50 ...AAACCTTGGGAATACTTTCGAGA............................................................................................................. 23 2 10.50 8.50 1.00 1.00 ....AACCTTGGGAATACTTTCGAGTTT........................................................................................................... 24 2 5.00 5.00 0.00 0.00 ...AAACCTTGGGAATACTTTAGAG.............................................................................................................. 22 2 3.50 3.50 0.00 0.00 ...AAACCTTGGGAATACTTTCGAGT............................................................................................................. 23 2 3.00 3.00 0.00 0.00 ...AAACCTTGGGAATACTTTTGAG.............................................................................................................. 22 2 3.00 3.00 0.00 0.00 ...AAACCTTGGGAATACTTTGGAG.............................................................................................................. 22 2 3.00 3.00 0.00 0.00 ....AACCTTGGGAATACTTTCGAGC............................................................................................................. 22 2 3.00 3.00 0.00 0.00 ....AACCTTGGGAATACTTTCGAGTAA........................................................................................................... 24 2 2.50 2.50 0.00 0.00 ....AACCTTGGGAATACTTTCAAG.............................................................................................................. 21 2 2.50 2.50 0.00 0.00 ....AACCTTGGGAATACTTTCGAGTT............................................................................................................ 23 2 2.50 2.50 0.00 0.00 .....ACCTTGGGAATACTTTCGAG.............................................................................................................. 20 2 2.00 2.00 0.00 0.00 ........................GATAAGGATGGCAAGACGCT........................................................................................... 20 2 2.00 1.00 1.00 0.00 ...AAACCTTGGGAATACTTTCGCG.............................................................................................................. 22 2 1.50 1.50 0.00 0.00 ...AAACCTTGGGAATACTTTCTAG.............................................................................................................. 22 2 1.50 1.50 0.00 0.00 ...AAACCTTGGGAATACTTTCCAG.............................................................................................................. 22 2 1.50 1.50 0.00 0.00 ...ACACCTTGGGAATACTTTCGAG.............................................................................................................. 22 2 1.50 1.00 0.50 0.00 ...AAACCTTGGGAATACTCTCGAG.............................................................................................................. 22 2 1.00 1.00 0.00 0.00 ...AAACCTTGGGAATACCTTCGAG.............................................................................................................. 22 2 1.00 0.50 0.50 0.00 ...AAACCTTGGGCATACTTTCGAG.............................................................................................................. 22 2 1.00 1.00 0.00 0.00 ...AAACCTTGGGAATCCTTTCGAG.............................................................................................................. 22 2 1.00 1.00 0.00 0.00 ....AACCTTGGGAATACTTTCTAG.............................................................................................................. 21 2 1.00 1.00 0.00 0.00 ....AACCTTGGGAATACTTTCGAA.............................................................................................................. 21 2 1.00 1.00 0.00 0.00 ....AACCTTGGGAATACTTTCGAGAAA........................................................................................................... 24 2 1.00 1.00 0.00 0.00 ....AACCTTGGGAATACCTTCGAG.............................................................................................................. 21 2 1.00 1.00 0.00 0.00 ...AAACCTTGGGAATACTTTCGAGTT............................................................................................................ 24 2 1.00 1.00 0.00 0.00 ...AAACCTTGGGAATACTTTCGAT.............................................................................................................. 22 2 1.00 1.00 0.00 0.00 ....AACCTTGGGAATACTTTCCAG.............................................................................................................. 21 2 1.00 1.00 0.00 0.00 ....AACCTTGGGAATACTTTCGAGTC............................................................................................................ 23 2 0.50 0.50 0.00 0.00 ....GACCTTGGGAATACTTTCGAG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCGAAAAAA.......................................................................................................... 25 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGGATACTTTCGAG.............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ....AACCTTGGAAATACTTTCGAGA............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCGAGTTAT.......................................................................................................... 25 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTTGA............................................................................................................... 21 2 0.50 0.50 0.00 0.00 ....AACCTTGGGxGTACTTTCGAG.............................................................................................................. 20 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTCGAGTA............................................................................................................ 24 2 0.50 0.50 0.00 0.00 .....ACCTTGGGAATACTTTCGAGT............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ....AACCTTGTGAATACTTTCGAG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTTCAG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTATGGAG.............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCGCG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ....AACCTTGGGACTACTTTCGAGT............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTCGATA............................................................................................................. 23 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATCCTTTCGAG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTCGAGTTA........................................................................................................... 25 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACxTTCTAG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAGTACTTTCGAG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCGGG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ...AAACATTGGGAATACTTTCG................................................................................................................ 20 2 0.50 0.50 0.00 0.00 ......CCTTGGGAATACTTTCGAGATTA.......................................................................................................... 23 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTCAAG.............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ....AACTTTGGGAATACTTTCGAG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ....AACCTTGGGGATACTTTCGAG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ........................GATAAGGATGGCAAGACGC............................................................................................ 19 2 0.50 0.00 0.50 0.00 ....AAACTTGGGAATACTTTCGAG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTCGAGTGA........................................................................................................... 25 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAGTACTTTCGAG.............................................................................................................. 22 2 0.50 0.00 0.50 0.00 ....AACCTTGGGAATACTTTCTAGA............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ....AACCTTGGCAATACTTTCGAG.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCGAGAAAAA......................................................................................................... 26 2 0.50 0.50 0.00 0.00 ....AACCTTGGTAATACTTTCGA............................................................................................................... 20 2 0.50 0.50 0.00 0.00 ...AAACCTTGGAAATACTTTCGAG.............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCG................................................................................................................ 19 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTCGAAA............................................................................................................. 23 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTCGAGC............................................................................................................. 23 2 0.50 0.50 0.00 0.00 .....ACCTTGGGAATACTTTCGAGTTC........................................................................................................... 23 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCGT............................................................................................................... 20 2 0.50 0.50 0.00 0.00 ...AAACCTTxGGAATACTTTCG................................................................................................................ 19 2 0.50 0.50 0.00 0.00 ...AAACCTCGGGAATACTTTCGAG.............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ...AGACCTTGGGAATACTTTCGAG.............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCCAGA............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCGATT............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTCGACT............................................................................................................. 23 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTCGAGTAA........................................................................................................... 25 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGAATACTTTCGAGTAAA.......................................................................................................... 26 2 0.50 0.50 0.00 0.00 ....AACCTTGGGACTACTTTCGAGTTAA.......................................................................................................... 25 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCGAT.............................................................................................................. 21 2 0.50 0.50 0.00 0.00 ...AAACCTTGGGATTACTTTCGAG.............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ......CCTTGGGAATACTTTCGAGTAA........................................................................................................... 22 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCGAGTTA........................................................................................................... 24 2 0.50 0.50 0.00 0.00 .......CTTGGGAATACTTTCGAGA............................................................................................................. 19 2 0.50 0.50 0.00 0.00 ...AAACCTTAGGAATACTTTCGA............................................................................................................... 21 2 0.50 0.00 0.00 0.50 ....AACCTTGGGAATACTTTCTAGT............................................................................................................. 22 2 0.50 0.50 0.00 0.00 ....AACCTTGGGAATACTTTCGAGAT............................................................................................................ 23 2 0.50 0.50 0.00 0.00

droYak2 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	chrX:4178368-4178492 +	78.21	TATCAAGTTAAAAA--ACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TATCAAGTTCAGAAATATAAAATCATGCTAGATCTTGGAAAAATATCTAATAGATGGTTTTTATACATCAATCAATTGATATTTTTCCTTGAACTAAATGGGTTTAGTGCTGCAGCAAAAATGGT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .........................................................................AATTGATATTTTTCCTTGAAC............................... 21 1 1.00 1.00 0.00 0.00 0.00 0.00
3	chrX:4178518-4178644 +	51.01	TATCAAGTTAAAAAAC----GAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT AAATAAATTAAAAAAATTTACATGTCAGTCTAGTCTCAGGAGATATAACTCTAAGATTTTGTTATTACATAAATCTTAGGTTATGTTTTCTGAAACAAGGTGGTTTGGCGTCAGCAAAATAAAGTTT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .........................................................................TCTTAGGTTATGTTTTCTGAAA................................ 22 1 10.00 5.00 0.00 4.00 0.00 1.00 .........................................................................TCTTAGGTTATGTTTTCTGA.................................. 20 1 7.00 1.00 0.00 5.00 0.00 1.00 .........................................................................TCTTAGGTTATGTTTTCTGAA................................. 21 1 6.00 2.00 0.00 3.00 0.00 1.00 ........................................................................ATCTTAGGTTATGTTTTCTGAA................................. 22 1 1.00 0.00 0.00 0.00 0.00 1.00 .........................................................................TCTTAGGTTATGTTTTCTGAAAA............................... 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ........................................................................ATCTTAGGTTATGTTTTCTGA.................................. 21 1 1.00 0.00 0.00 1.00 0.00 0.00 .........................................................................TCTTAGGTTATTTTTTCTGA.................................. 20 1 1.00 0.00 0.00 0.00 0.00 1.00 .........................................................................TCTTAGGTTATGTTTTCTGAAT................................ 22 1 1.00 0.00 0.00 1.00 0.00 0.00
1	chrX:4177997-4178145 +	47.96	TATCAAGTTAAAAAACG---AAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATT-----------------------GT TATGAAGTTACAAAATATATAGTCCCTTTTAGTCCCTGAAAAAATACCTAATAGATTGTTTTTGTACATCAATCATTGGCTATTTTTTCTGGAACCAAATGGTTTTCGTACTGCAATCAAAATGAAATTTATTTAGCAAAATTCCAAGT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ........................................................................TCATTGGCTATTTTTTCTGGA........................................................ 21 1 12.00 0.00 0.00 3.00 0.00 9.00 ........................................................................TCATTGGCTATTTTTTCTGGAAA...................................................... 23 1 7.00 1.00 0.00 3.00 0.00 3.00 ........................................................................TCATTGGCTATTTTTTCTTGAA....................................................... 22 1 7.00 6.00 0.00 0.00 1.00 0.00 ........................................................................TCATTGGCTATTTTTTCTGGAA....................................................... 22 1 6.00 0.00 0.00 6.00 0.00 0.00 ........................................................................TCATTGGCTATTTTTTCTGGAT....................................................... 22 1 4.00 0.00 0.00 0.00 0.00 4.00 ........................................................................TCATTGGCTATTTTTTCTTGGA....................................................... 22 1 2.00 1.00 1.00 0.00 0.00 0.00 .........................................................................CATTGGCTATTTTTTCTGGAAC...................................................... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ........................................................................TCATTGGCTCTTTTTTCTGGAT....................................................... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ........................................................................TCATTGGCTATTTTTTCTTGA........................................................ 21 1 1.00 0.00 1.00 0.00 0.00 0.00 ........................................................................TCATTGGCTATTTTTTCTGGAC....................................................... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ........................................................................TCATTGGCTATTTTTTCTGGGA....................................................... 22 1 1.00 1.00 0.00 0.00 0.00 0.00 ........................................................................TCATTGGCTATTTTTTCTGGAAAC..................................................... 24 1 1.00 0.00 0.00 0.00 0.00 1.00 ...................................CTGAAAAAATACCTAATAGATTG........................................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................................TCATTGGCTATTTTTTCTGGAAT...................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................................TCATTGGCTACTTTTTCTGGA........................................................ 21 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................................TCATTGGCTATTTTTTCTGG......................................................... 20 1 1.00 0.00 0.00 1.00 0.00 0.00 ..........................................................................ATTGGCTATTTTTTCTTGA........................................................ 19 1 1.00 1.00 0.00 0.00 0.00 0.00

droEre2 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_4690:1630508-1630651 -	47.27	TATCAAGTTAAAAAA--CGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATG--------------CATCAATTACTTGATATTCATCCTTGAACTA-AATGGTTT-TAGAGCTGCAAGA----AAAATTGT TATCAAGTTAAAAAATATAAAAGCAGTCCAGATCATGGAAAAATATCAAATAGATTGTTTTATTTCAGTCCAAACAATACAT-AATCACGCGAGTCATAGTATCGAAATTTAGCAATTTATGAAGTTAAAAAAATATAAAGCCAT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .........................................................................................................................GAAGTTAAAAAATTTTAA...... 18 2 1.00 0.00 0.00 0.00 1.00 ..TGAAGTTAAAAAATAAAAA............................................................................................................................ 19 2 0.50 0.00 0.00 0.00 0.50 ........................................................................................................................TGAAGTTAAAAAATTTTAA...... 19 2 0.50 0.00 0.00 0.00 0.50 TATCAAGTAAAAAAATATT.............................................................................................................................. 19 1 1.00 1.00 0.00 0.00 0.00
2	scaffold_4845:17672968-17673068 -	44.11	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTG-----------------------------------GACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TATTGAAT---ACAAGGAAATCGTGTTGGGCT-TATGCAAATTTTAATTTGCTTTGATTAGCACTTAAGAGAGGAATTTTAAATAAATCGTTAGCTCACATCTAT----------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ......................................AAATTTTAATTTGCATTCA..................................................................................................... 19 2 0.50 0.50 0.00 0.00 0.00 .......................................AATTTTAATTTGTTTTGCTT................................................................................................... 20 1 1.00 0.00 0.00 0.00 1.00

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000453901:212756-212888 +	45.15	TATCAA-GTTAAAAAACGAAATCATGTTAGATCCTG--GACAAATATGAAGTAAATTGTTTTTATGCATCAATTACT------------------------------TGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT AATGGGCACTAAAAAAGTGTGTAATTTAAAATTCAATATTTAAACATTAAGTTTTTCGTTTCTTTAGGTTGATTCCTATTCGACTGTATCATAGGCATCAATCCGTTTAGTATTGAC-----------------------TTTTTTAAAAGATTGT Size Hit Count Total Norm

droEug1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000409076:259969-260081 -	48.2	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAG-AAAAATTGT TATTATTTTCCGCATTTAAATAATATTAA--------TATATATAATATAAATTCACTGCA--AAT-TATCAATGGAGTATCAGTAATGTAAAGAATGTTGTTAAAACCAAAACAATAAATAGT Size Hit Count Total Norm
2	scf7180000409076:258998-259133 -	42.97	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGAC-----AAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAAT------------------------------GGTTTTAGAGCTGCAAGAAAAATTGT TACTAAGTGAAAAAAG----T----------GATGGAAAACTAAAATGCGAAGAAAAT----ATGAAGAATGAAGAATGTGTTAATAATTTCGGGAACAAGTGAAATCATGAGGTTAGAATAAATCCATCGTGATTTGGGAGATGCAAGCGAAA---- Size Hit Count Total Norm
1	scf7180000408958:5674-5813 -	36.54	TATCAAGTTAAAAAA----------------------------------CGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TTTTTAGTAAATCATTTTTGTGATAATACAAAAAATTTAAGGTATGAATAGTTTTAATGTTTGTTTCCGAAAGTTTAGG-----------------ACATTTTTTGGTTGATACAAAGTCAATGTATAAGTACCTAAAAAGACTAACTAACAGTTGC Size Hit Count Total Norm

droBia1 - 0 hit found

droTak1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000415394:1165261-1165394 +	45.15	TATCAA------GTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAA--------TTGTTTTTATGCATCAATTACTTGATATTCATCCTT-GAACTAAATGGTTTTAGAGCTGC------AAGAAAAATTGT TTTCAACAATCAGTAGATTACCGAAATCATATAAAT----------ATATAAAATATAATTAACTTTCGAATTTATCCATCAAAAACACAAGATTCGTCTTTTCATCATTCATGTTTTACGGATGTTTTCATTAGAATGTTTTT Size Hit Count Total Norm
1	scf7180000415394:1163118-1163228 +	41.77	TATCAAGTTAAAAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT CATTCTGACCTAAATCATAATCAAATAAATTCTATATGAAATATATAAAAAAAAATTAGTGAACAACAAATTTT------------TTAATCTAAACCATTATATAAAAACTTTAAAAATCAC Size Hit Count Total Norm

droEle1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000491011:2115245-2115356 +	46.65	TATCAAGTTAAA--AAACGAAATCATGTTAGATCCTGGACAAATATGAAGTA-AATTGTTTTTATGCATCAATTACTTGA--TATTCAT---CCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TATTTGGTTATTGTGATTGGAATCATAGTTGCT-GTGAATATTTATACAACACTATTGTTC---TCAATTG--------AAATGTCAATACATTTAAAAATATATAGCTTT------ACA-TTAACATTTT Size Hit Count Total Norm
1	scf7180000491011:2115523-2115629 +	45.39	TATCAAGTTAA-AAAACGAAATCATGTTAGATCCTGGACAAATATGAAGTA-------------AATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGT TATAATTA--AGTGAATGTATATAAAATCAATCGTGTGCTGAAGTGAATTTACAACTTGTCTTTTAATATTTTTTTTGATTAATTAATTGATAATAATA----------------------------AATAAATAAT Size Hit Count Total Norm