dme-mir-976- 12- and 20-way alignments

dme-mir-976	chrX:19452928-19453024 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 19452987-19453008
   star strand at position 19452950-19452971
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:19452913-19453039 +	AACGG----------------------CGGT---G-----GTGGGCATCGCCATGCAGTGCCGCGGCATTGGTGAGGC-CATCTCCAATGG-ATTAGTTC---TCA------ACATTGGATTAGTTATCATCAATGCCGGTGCACTGCAC--CTAACAACATCGCGCCGG----------------
droSim1	chrX:15018510-15018617 +	---------------------------------------------------CATGCAGTGTCGTGGCATTGGTGAGGA-CATCTCCAATGG-ATTGGTTC---TCA------TCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTGCTGTCAACTTCGCGCAAT----------------
droSec1	super_8:1735245-1735349 +	----------------------------------------------------ATGCAGTGCCGTGGCATTGGTGAGGA-CATCTCCAATGG-CTTAGTTC---TCA------TCATTGGATTAGTTATCATCAATGCCGGTGCACTGCAG--CTGTCAACTTCGCGCAAT----------------
droYak2	chrX:11885785-11885919 -	G-AGG-------------------------TG-------AGTGAGAATCG-CATGCAGTGCCACGACATTGGTGAGGG-CATCTCCAATGG-G-GA---CCCGGCA------TCATTGGATTAGTTCTCATTAATGCCGGAGCACTGCAC--CTACCAACTTCGCACGGTTCCTAT---TCCTATT
droEre2	scaffold_4690:9688896-9689023 +	G-AGG-------------------------TG-------TGCCAGAATCG-CATGCAGTGCCTCGACATTGGTGAGGG-CATCTCCAATGG-G-GAGCCA---GCA------TCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCAC--CTACGAACTGAGCATT-------T---GGGGATC
droAna3	scaffold_13417:2467580-2467681 -	G-CGC-------------------------TACCGATGCTCCCC-------GAAGGAGCGCCTCGACATTGGTGAGTT-CATCTCCAATGG-T-CAGTAG---CCC------GCATTGGATTAGTTCTCATTGATGGCGAAGCGAG-----------------------T----------------
dp4	Unknown	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_181096:7956784-7956910 +	-------------------------------------------------------CAACACCTCGATATTGGTGAGTTCCAGCTCCAATGTTATTGGAGCCCAACATTGAACACATTGGATTAGTTCTCATCGATGGCGAAGTGTTT-G---TGAGCAATATCGTATATTGTGCGTGCAGTGTATT
droVir3	Unknown	atcgttatcgttatcAGAATTAATTATCGTT---G-----AAGTG---CGTTGTGCAGCCCCTCGCGATTGATGATAG-CATCTCCAATGA-G-CA---T---ATC------ACATTGGATTAGTTCTCATCGATGCCGATGCGCTGTAC--CAG-CA----------------------------
droMoj3	Unknown	T-CGTTATCGTTATC-------------------------GCTAGCGACGCTGTGCAGCCCCTCGCGATTGATGAAAG-CATCTCCAATGA-G-TA---T---TTC------GCATTGGATTAGTTCTCATCGATGTCGATGCGCTGTAT--CAG-CA----------------------------
droGri2	Unknown	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:19452913-19453039 +	NA	AACGG------------------------CGGTG-----------------GTG-GGCATCGCCATGCAGTGCCGCGGCATTGGTGAGGC-CATCTCCAATGG-ATTAGTT---------CTCAACATTGGATTAGTTATCATCAATGCCGGTGCACTGCACC--TAAC--AACATC---------------GCG------------------CCGG
droSim1	chrX:15018511-15018617 +	3	A----------------------------------------------------------------TGCAGTGTCGTGGCATTGGTGAGGA-CATCTCCAATGG-ATTGGTT---------CTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTGCTGTC--AACTTC---------------GCG------------------CAAT
droSec1	super_8:1735239-1735349 +	6	TCC-----------------------------------------------------------GCATGCAGTGCCGTGGCATTGGTGAGGA-CATCTCCAATGG-CTTAGTT---------CTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCAGC--TGTC--AACTTC---------------GCG------------------CAAT
droYak2	chrX:11885798-11885920 -	81	AGAGG---------------------------TG---------------A-GTG-AGAATC-GCATGCAGTGCCACGACATTGGTGAGGG-CATCTCCAATGG-G-GACCC---------GGCATCATTGGATTAGTTCTCATTAATGCCGGAGCACTGCACC--TACC--AACTTC---------------GCA------------------CGGT
droEre2	scaffold_4690:9688892-9689017 +	4	TCCAG------------------------AGGTG-----------------TGCCAGAATC-GCATGCAGTGCCTCGACATTGGTGAGGG-CATCTCCAATGG-G-GAGCC---------AGCATCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCACC--TACG--AACTGA---------------GCA------------------TTTG
droEug1	scf7180000409230:879657-879763 -	455	A----------------------------------------------------------------TGCAGCGCCTTGACATTGGCGAGGC-CAACTCCAATGT-C-GAATC---------GAAATCATTGGATTAGTTCTCATCAATGACTGAGCCCTGTAAT--GACC--AACGTA---------------CCATA----------------TCTT
droBia1	scf7180000302069:1151015-1151142 -	35	ATCAA------------------------TGCTG-----------------GTG-GGGATGAGGAAGCACCGCCTCGGCATTGGTGAGGG-CACCTCCAATGG-C-GAGCC---------GGCATCATTGGATTAGTTCTCATTAATGGCGGAGTGCTGCACC--GACC--AACGCC---------------ACATA----------------CGGT
droTak1	scf7180000415169:844814-844944 -	701	TCTGG------------------------AGAGG-----------------AGGAGAAA-GAGGAAGCATCGCCTCGACATTATTGAGGG-CACCTCCAATGG-C-GAGCC---------GACATCATTGGATTAGTTCTCATTAATGGCGGAGCGCTGCACT--GACC--AACTGTTCGTC----------CAT------------------AAGG
droEle1	scf7180000490751:1118774-1118889 +	2	ATCAA------------------------TAC-------------------CTG------CACAAAGCATCGCCTCGCCATTGGTGAGGG-CACCTCCAATGG-C-GAGCC---------GGCTGCATTGGATTAGTTTTCATCAATGGCGGAGCCCTGCACT--GACC--AGCAGA------------------------------------CCGA
droRho1	scf7180000761121:190087-190218 -	9	AACCG------------------------C---------------------CTG------CAAACAGCATCACCTCGCCATTGGTGAGGG-CATCTCCAATGA-C-GAGTC---------GGCAGCATTGGATTAGTTCTCATTAATGGCGGAGCGGTGCACT--GACC--AGCAGACTGACCTCTCCGCTAGCA------------------CCAG
droFic1	scf7180000454073:1733903-1734027 +	2	ATCAC------------------------CGC-----------------------------AGACAGCGGCGCCCCGCCATTAATAAGGA-CCTCTCCAATGG-C-AGACC-------GTCGAATCATTGGATTAGTTCTCATTAATGGTGGAGTGCCGCACC--GACC--ACCACATTTTTTTC-------TAA------------------GTGC
droKik1	scf7180000302517:1183679-1183793 +	2	GC-------------------------------------------------------------GAGGCATTGCCTCGCCATTGGTGAGAG-CATCTCCAATGA-C-GGCAC-------TTGATTGCATTGGATTAGTTCTCATTGATGGCGGAGCATTGCACC--TACT--CCAGCAACGGC----------TAT------------------CCAG
droAna3	scaffold_13417:2467561-2467679 -	4	GCTAC------------------------CGATG-----------------CTC------CCCGAAGGAGCGCCTCGACATTGGTGAGTT-CATCTCCAATGG-T-CAGTA---------GCCCGCATTGGATTAGTTCTCATTGATGGCGAAGCGAGT--CC--TACC--CCCACA---------------CCA------------------GCGA
droBip1	scf7180000395874:39930-40044 -	6	GCTAG------------------------CGATG-----------------CTC------CGTGAAGGAGCGCCTCGCCATTGGTGGGGG-CGTCTCCAATGG-C-CAGAA---------GCCCGCATTGGATTAGTTCTCATTAATGGCGAAGCGAGTCCTT--CCTC-----------------------CAC------------------ACCA
dp4	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_181096:7956743-7956912 +	3	CTCTC----CCCTTCC--TTCTTACACAGGATTA-----------------TGT-AGGATT--ATGGCAACACCTCGATATTGGTGAGTTCCAGCTCCAATGTTATTGGAGCCCAACATTGAACACATTGGATTAGTTCTCATCGATGGCGAAGTGTTT--GT--GAGC--AATATC---------------GTATATTGTGCGTGCAGTGTATTGT
droVir3	scaffold_13042:906708-906880 -	64	ATCGTTATCGTTATCGTTATCGTTATCAGAATTAATTATCGTTGAAGTGCGTTC------TTTGGTGCAGCCCCTCGCGATTGATGATAG-CATCTCCAATGA-G-CA------------TATCACATTGGATTAGTTCTCATCGATGCCGATGCGCTGTACC--AGCAACAACAAC---------------AGG------AATAGCAACGGAAACA
droMoj3	scaffold_6328:2900970-2901098 -	20	TATCG-----TTATCGCTAG---------CGACG-----------------CTT------C-GGGTGCAGCCCCTCGCGATTGATGAAAG-CATCTCCAATGA-G-TA------------TTTCGCATTGGATTAGTTCTCATCGATGTCGATGCGCTGTATC--AGCAACAACAAC---------------AAC------------------ATGA
droGri2	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AACGG----------------------CGGT---G-----GTGGGCATCGCCATGCAGTGCCGCGGCATTGGTGAGGC-CATCTCCAATGG-ATTAGTTC---TCA------ACATTGGATTAGTTATCATCAATGCCGGTGCACTGCAC--CTAACAACATCGCGCCGG----------------

Size

Hit Count

Total Norm

droSim1

---------------------------------------------------CATGCAGTGTCGTGGCATTGGTGAGGA-CATCTCCAATGG-ATTGGTTC---TCA------TCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTGCTGTCAACTTCGCGCAAT----------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...................................................................................................................TTGGATTAGTTATCATCAATGCC................................................	23	1	999.00	0.00	36.00	958.00	5.00
...................................................................................................................TTGGATTAGTTATCATCAATG..................................................	21	1	29.00	0.00	2.00	27.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGC.................................................	22	1	22.00	0.00	1.00	21.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGCCT...............................................	24	1	13.00	0.00	1.00	12.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGAC................................................	23	1	9.00	0.00	0.00	9.00	0.00
....................................................................................................................TGGATTAGTTATCATCAATGCC................................................	22	1	3.00	0.00	0.00	3.00	0.00
....................................................................TTGGTGAGGT-CGTCTCCA...................................................................................................	18	1	2.00	0.00	0.00	2.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAA....................................................	19	1	2.00	0.00	0.00	2.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGCCC...............................................	24	1	2.00	0.00	0.00	2.00	0.00
..................................................................CATTGGTGAGGA-CATCTC.....................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..............................................................................................................................................CACTGCAxTGCTGTCACCTT........................	19	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGGTATCATCAATGCC................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................................................CATTGGTGAGGA-CATCTCCA...................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................ATTAGTTATCATCAATGCCGGAT............................................	23	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGGTTAGTTATCATCAATGCC................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGCT................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAGTGCC................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTATCATCA.....................................................	18	1	1.00	0.00	0.00	1.00	0.00
................................................................................................................................................CTGCAxTGCTGTCACCTTCGC.....................	20	1	1.00	0.00	0.00	0.00	1.00
............................................................................................ATTGGxTC---TGA------TCATTGGA..................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTGGTTATCATCAATGCC................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................................................CATTGGTGAGGA-CATCTCT....................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATCAGTTATCATCAATGCC................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TCGGATTAGTTATCATCAATGCC................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGACTAGTTATCATCAATGCC................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGTC................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAATTATCATCAATGCC................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTATCATTAATGCC................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGCCA...............................................	24	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTATAATCAATGC.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGCTTAGTTATCATCAATGCC................................................	23	1	1.00	0.00	0.00	1.00	0.00

droSec1

----------------------------------------------------ATGCAGTGCCGTGGCATTGGTGAGGA-CATCTCCAATGG-CTTAGTTC---TCA------TCATTGGATTAGTTATCATCAATGCCGGTGCACTGCAG--CTGTCAACTTCGCGCAAT----------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...................................................................................................................TTGGATTAGTTATCATCAATGCC................................................	23	1	35.00	25.00	5.00	5.00
...................................................................................................................TTGGATTAGTTATCATCAATGC.................................................	22	1	26.00	20.00	1.00	5.00
....................................................................................................................TGGATTAGTTATCATCAATGCC................................................	22	1	7.00	5.00	1.00	1.00
...................................................................................................................TTGGATTAGTTATCATCAATG..................................................	21	1	6.00	4.00	1.00	1.00
....................................................................................................................TGGATTAGTTATCATCAATGC.................................................	21	1	2.00	1.00	1.00	0.00
....................................................................................................................GAGATTAGTTATCATCAATGCC................................................	22	1	1.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGTTATCCTCAAT...................................................	20	1	1.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGCAA...............................................	24	1	1.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGCCT...............................................	24	1	1.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGCA................................................	23	1	1.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTATCATCAATGCT................................................	23	1	1.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTATCATCACTGCC................................................	23	1	1.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTATCATCACTGC.................................................	22	1	1.00	1.00	0.00	0.00
...................................................................................................................TTGGATTATTTATCATCAATGC.................................................	22	1	1.00	1.00	0.00	0.00

droYak2

G-AGG-------------------------TG-------AGTGAGAATCG-CATGCAGTGCCACGACATTGGTGAGGG-CATCTCCAATGG-G-GA---CCCGGCA------TCATTGGATTAGTTCTCATTAATGCCGGAGCACTGCAC--CTACCAACTTCGCACGGTTCCTAT---TCCTATT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...................................................................................................................TTGGATTAGTTCTCATTAATGC.................................................	22	1	131.00	0.00	0.00	41.00	4.00	86.00
....................................................................TTGGTGAGGG-CATCTCCAATGG-..............................................................................................	22	1	65.00	0.00	0.00	63.00	2.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTAATG..................................................	21	1	57.00	0.00	1.00	48.00	1.00	7.00
...................................................................................................................TTGGATTAGTTCTCATTAAT...................................................	20	1	22.00	0.00	0.00	6.00	0.00	16.00
...................................................................................................................TTGGATTAGTTCTCATTAATGCC................................................	23	1	16.00	0.00	0.00	0.00	0.00	16.00
....................................................................TTGGTGAGGG-CATCTCCAATG................................................................................................	21	1	15.00	0.00	0.00	14.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTAATGCT................................................	23	1	8.00	0.00	0.00	1.00	0.00	7.00
..................................................................................................................ATTGGATTAGTTCTCATTAATG..................................................	22	1	5.00	0.00	0.00	4.00	0.00	1.00
..................................................................................................................ATTGGATTAGTTCTCATTAAT...................................................	21	1	5.00	0.00	0.00	2.00	1.00	2.00
...................................................................ATTGGTGAGGG-CATCTCCAATG................................................................................................	22	1	3.00	0.00	0.00	2.00	1.00	0.00
...................................................................ATTGGTGAGGG-CATCTCCAAT.................................................................................................	21	1	2.00	0.00	0.00	1.00	1.00	0.00
...............................................TCG-CATGCAGTGCCACGAC.......................................................................................................................	19	1	2.00	0.00	0.00	0.00	0.00	2.00
...................................................................ATTGGTGAGGG-CATCTCCTT..................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................CATTGGTGAGGT-CGTCTCC....................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTCGTTCTCATTAATG..................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................CTTGGATTAGTTCTCATTAATGC.................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGGTCTCATTAATGC.................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................................................TTGGTGAGGG-CATCTCCAATGA-..............................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCTTTACT...................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTAATGCCT...............................................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGTTCACATTAATGC.................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCCCATTAATGCT................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAATTCTCATTAAT...................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
...................................................................ATTGGTGAGGT-CGTCTCCA...................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCTTTAATGCT................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATG..................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTAATGT.................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................ATTGGATTAGTTCTAATTAAT...................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................ACATTGGTGAGGT-CGTCTCC....................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................ATTGGATTAGTTCTCATTAATGA.................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................ATTGGTGAGGG-CATCTCCAATA................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTAATTC.................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00

droEre2

G-AGG-------------------------TG-------TGCCAGAATCG-CATGCAGTGCCTCGACATTGGTGAGGG-CATCTCCAATGG-G-GAGCCA---GCA------TCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCAC--CTACGAACTGAGCATT-------T---GGGGATC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...................................................................................................................TTGGATTAGTTCTCATTAATGC.................................................	22	1	79.00	0.00	3.00	0.00	76.00
....................................................................TTGGTGAGGG-CATCTCCAATGG-..............................................................................................	22	1	68.00	0.00	7.00	0.00	61.00
...................................................................................................................TTGGATTAGTTCTCATTAATG..................................................	21	1	12.00	0.00	1.00	0.00	11.00
....................................................................TTGGTGAGGG-CATCTCCAATG................................................................................................	21	1	12.00	0.00	1.00	0.00	11.00
..................................................................................................................ATTGGATTAGTTCTCATTAAT...................................................	21	1	10.00	0.00	0.00	0.00	10.00
...................................................................................................................TTGGATTAGTTCTCATTAAT...................................................	20	1	8.00	0.00	1.00	0.00	7.00
...................................................................ATTGGTGAGGG-CATCTCCAATG................................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................ATTGGATTAGTTCTCATTAATG..................................................	22	1	3.00	0.00	0.00	0.00	3.00
...................................................................ATTGGTGAGGG-CATCTCCAAT.................................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
...................................................................................................................TTGGCTTAGTTCTCATTAATGC.................................................	22	1	2.00	0.00	0.00	0.00	2.00
....................................................................TTGGTGATGG-CATCTCCAATGG-..............................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
....................................................................TTTGTGAGGG-CATCTCCAATGG-..............................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
........................................................................TGAGGG-CATCTCCAAGGC-..............................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
....................................................................TTGGTGAGTG-CATCTCCAATGG-..............................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................................................TTGGTGATGG-CATCTCCAATG................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGGTTAGTTCTCATTAATGC.................................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................................................TTAGTGAGGG-CATCTCCAATGG-..............................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTTGATTAGTTCTCATTAATGC.................................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................................................TTGGCGAGGG-CATCTCCAATG................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
....................................................................TTGGTGAGGG-CATCTxCAATGG-..............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGTTCTCACTAATG..................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................ATTGGATTATTTCTCATTAATG..................................................	22	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGTTCTCATTAATC..................................................	21	1	1.00	0.00	0.00	0.00	1.00
......................................................................GATGTGGG-CATCTCCAATGG-..............................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
....................................................................TTGGTGCGGG-CATCTACAATGG-..............................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTAATGCA................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................................................TTGGTGAGGG-CATCTCCAATGG-A-............................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTAGATTAGTTCTCATTAATGC.................................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................................................TTGGTGAGGG-CAGCTCCAATG................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGTTCTCATCGATGC.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTAATGCT................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................................................TTGGTGAGGG-AATCTCCAATGG-..............................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................................................TTGGTGAGGC-CATCTCCAATGG-..............................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTATTTCTCATTAATGC.................................................	22	1	1.00	0.00	0.00	0.00	1.00

droAna3

G-CGC-------------------------TACCGATGCTCCCC-------GAAGGAGCGCCTCGACATTGGTGAGTT-CATCTCCAATGG-T-CAGTAG---CCC------GCATTGGATTAGTTCTCATTGATGGCGAAGCGAG-----------------------T----------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...................................................................................................................TTGGATTAGTTCTCATTGATGG.................................................	22	1	771.00	281.00	428.00	61.00	1.00
...................................................................................................................TTGGATTAGTTCTCATTGATG..................................................	21	1	289.00	168.00	104.00	17.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATGT.................................................	22	1	62.00	47.00	14.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATGGT................................................	23	1	33.00	14.00	18.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGAT...................................................	20	1	18.00	13.00	1.00	4.00	0.00
..................................................................................................................ATTGGATTAGTTCTCATTGATG..................................................	22	1	11.00	10.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATGGC................................................	23	1	10.00	6.00	4.00	0.00	0.00
...................................................................................................................TTTGATTAGTTCTCATTGATGG.................................................	22	1	9.00	0.00	9.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATGGA................................................	23	1	8.00	3.00	5.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATGGTT...............................................	24	1	5.00	3.00	2.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTAATTGATGG.................................................	22	1	4.00	1.00	3.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATT..................................................	21	1	4.00	2.00	2.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATTG.................................................	22	1	4.00	1.00	3.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATAG.................................................	22	1	3.00	1.00	2.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATA..................................................	21	1	3.00	1.00	2.00	0.00	0.00
...................................................................................................................TTGGATTAGTCCTCATTGATGG.................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................ATTGGATTAGTTCTCATTGATGT.................................................	23	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTATCATTGATGG.................................................	22	1	3.00	2.00	1.00	0.00	0.00
...................................................................................................................TGGGATTAGTTCTCATTGATGG.................................................	22	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGCTCTCATTGATGG.................................................	22	1	3.00	0.00	1.00	2.00	0.00
...................................................................................................................TTGGATTAGTTCTCAGTGATGG.................................................	22	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGGTGG.................................................	22	1	2.00	0.00	2.00	0.00	0.00
...................................................................................................................TTGGGTTAGTTCTCATTGATGG.................................................	22	1	2.00	0.00	1.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTAATGG.................................................	22	1	2.00	1.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATC..................................................	21	1	2.00	1.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATCG.................................................	22	1	2.00	1.00	1.00	0.00	0.00
...................................................................................................................TTGGTTTAGTTCTCATTGATGG.................................................	22	1	2.00	0.00	0.00	2.00	0.00
...................................................................................................................TTGGATTAGTTTTCATTGATGG.................................................	22	1	2.00	0.00	2.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCACATTGATGG.................................................	22	1	2.00	1.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTCATGG.................................................	22	1	2.00	1.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGCTCTCATTGATG..................................................	21	1	2.00	0.00	2.00	0.00	0.00
...................................................................................................................TTTGATTAGTTCTCATTGATG..................................................	21	1	2.00	0.00	2.00	0.00	0.00
...................................................................................................................TTGGATTAGTTGTCATTGATGG.................................................	22	1	2.00	2.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTAATGC.................................................	22	1	2.00	0.00	2.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTTATTGATGG.................................................	22	1	2.00	0.00	1.00	1.00	0.00
...................................................................................................................TTTGATTAGTTCTCATTGATGT.................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTxxTTCTCATTGATG..................................................	19	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGTTTAGTTCTCATTGATG..................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................ATCGGATTAGTTCTCATTGATG..................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................ATTGGATTAGTTCTCATTGATGA.................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................ATTGGATTAGTTCTCATTGAT...................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTACTTCTCATTGATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTTATGG.................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTCCTCATTGATG..................................................	21	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTGCTCATTGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATAT.................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGAGGG.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGGTTAGTTCTCATTGATGC.................................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................................TTGATTAGTTCTCATTGATG..................................................	20	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCACTGATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGCTTAGTTCTCATTGATGC.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................CTGGATTAGTTCTCATTGATGG.................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTATCATTGATG..................................................	21	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTTGATTAGTTCTCATTGATTG.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................G---CCC------GCACTGGATTATTT............................................................	18	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGTTG..................................................	21	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGAxTAGTTCTCATTGATGG.................................................	21	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAATTCTCATTGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGCTGG.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGCTTAGTTCTCATTGATGG.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATGGATGG.................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATGAGTTCTCATTGATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TCGGATTAGTTCTCATTGATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGTTGG.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTACTCATTGATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTGTCATTGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTATCATTGATGT.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGTATTAGTTCTCATTGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTTATGGT................................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCCTTGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCACATTGAT...................................................	20	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTGGTTCTCATTGATG..................................................	21	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGCATTAGTTCTCATTGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGA....................................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................ATTGGATTAGTTCTCATTGA....................................................	20	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCCCATTGATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCACTGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TCGGATTAGTTCTCATTGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGACTAGTTCTCATTGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00

dp4

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

-------------------------------------------------------CAACACCTCGATATTGGTGAGTTCCAGCTCCAATGTTATTGGAGCCCAACATTGAACACATTGGATTAGTTCTCATCGATGGCGAAGTGTTT-G---TGAGCAATATCGTATATTGTGCGTGCAGTGTATT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................................................................................................TTGGATTAGTTCTCATCGATGG.................................................	22	1	427.00	241.00	27.00	83.00	76.00
...................................................................................................................TTGGATTAGTTCTCATCGATG..................................................	21	1	155.00	116.00	2.00	5.00	32.00
...................................................................................................................TTGGATTAGTTCTCATCGAT...................................................	20	1	32.00	27.00	0.00	1.00	4.00
...................................................................................................................TTGGATTAGTTCTCATCGATGGT................................................	23	1	13.00	3.00	2.00	5.00	3.00
...................................................................................................................TTGGATTAGTTCTCATCGA....................................................	19	1	8.00	1.00	0.00	0.00	7.00
...................................................................................................................TTGGATTAGTTCTCATCGATGT.................................................	22	1	7.00	5.00	0.00	1.00	1.00
...................................................................................................................TTGGATTAGTTCTCATTGATGG.................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................ATTGGATTAGTTCTCATCGATG..................................................	22	1	4.00	3.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGTTCTCATCGG....................................................	19	1	3.00	0.00	0.00	0.00	3.00
...................................................................................................................TTGGATTAGTTCCCATCGATGG.................................................	22	1	2.00	0.00	0.00	2.00	0.00
......................................................................................AAAGTTATTGGAGCCAAA..................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
..................................................................................................................ATTGGATTAGTTCTCATCGAT...................................................	21	1	2.00	2.00	0.00	0.00	0.00
..........................................................................................TTATTGGAGCCCAACATTGAACACA.......................................................................	25	1	2.00	0.00	0.00	0.00	2.00
...................................................................................................................TTGGGTTAGTTCTCATCGATGG.................................................	22	1	2.00	1.00	0.00	1.00	0.00
...................................................................................................................CTGGATTAGTTCTCATCGATGG.................................................	22	1	2.00	0.00	1.00	1.00	0.00
...................................................................................................................ATGGATTAGTTCTCATCGATGG.................................................	22	1	2.00	0.00	0.00	2.00	0.00
...................................................................................................................TTGGATTAATTCTCATCGATGG.................................................	22	1	2.00	1.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTTATCGATGG.................................................	22	1	2.00	1.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTxATCGATGG.................................................	21	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGCTTAGTTCTCATCGATGG.................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................ATTGGATTAGTTCTCATCGATGG.................................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTxxTTCTCATCGATGG.................................................	20	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................................AATTCTCATCGATGGCGT..............................................	18	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGCATTAGTTCTCATCGATGG.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATAG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
......................................................................GGTxAATTCCAGCTCCAAT.................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................................................................................................................T	19	2	0.50	0.50	0.00	0.00	0.00
..................................................................................................................ATTGGATTAGTTCTCATCGATGT.................................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTAGATTAGTTCTCATCGATGG.................................................	22	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGTTCTCATCGATGA.................................................	22	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGG.................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGGTGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTxGTTCTCATCGATG..................................................	20	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTTGTTCTCATCGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGC.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGACTAGTTCTCATCGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCACATCGATGG.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................................................................................GTTTTCATCGATGCCGAAG............................................	19	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCCATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGCTCTCATCGATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGAGG..................................................	21	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGTTCGCATCGATGG.................................................	22	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGTTATCATCGATGG.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTTGATTAGTTCTCATCGATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCAATGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCGTCGATGG.................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGACGG.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGGA................................................	23	1	1.00	1.00	0.00	0.00	0.00

droVir3

atcgttatcgttatcAGAATTAATTATCGTT---G-----AAGTG---CGTTGTGCAGCCCCTCGCGATTGATGATAG-CATCTCCAATGA-G-CA---T---ATC------ACATTGGATTAGTTCTCATCGATGCCGATGCGCTGTAC--CAG-CA----------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................................................................................TTGGATTAGTTCTCATCGATGCC................................................	23	1	144.00	4.00	0.00	0.00	138.00	2.00
...................................................................................................................TTGGATTAGTTCTCATCGATGC.................................................	22	1	104.00	56.00	0.00	1.00	44.00	3.00
...................................................................................................................TTGGATTAGTTCTCATCGATG..................................................	21	1	97.00	77.00	0.00	0.00	20.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGCCG...............................................	23	1	27.00	24.00	1.00	0.00	2.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGCCC...............................................	24	1	19.00	1.00	0.00	0.00	18.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATC..................................................	21	1	13.00	1.00	0.00	0.00	12.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGAT...................................................	20	1	12.00	11.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGCCT...............................................	24	1	9.00	0.00	0.00	0.00	9.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGA....................................................	19	1	8.00	1.00	0.00	0.00	7.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGCT................................................	23	1	5.00	1.00	0.00	0.00	4.00	0.00
.................................................................CGATTGATGATAG-CATCTC.....................................................................................................	19	1	4.00	0.00	0.00	0.00	4.00	0.00
.................................................................CGATTGATGATAG-CATCTCCAAT.................................................................................................	23	1	3.00	1.00	0.00	1.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGAC................................................	23	1	2.00	0.00	0.00	0.00	2.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTCC...............................................	24	1	2.00	0.00	0.00	0.00	2.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGT.................................................	22	1	2.00	2.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTC................................................	23	1	2.00	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGCA................................................	23	1	2.00	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCCATGCT................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATTC.................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCxATGCC................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATAGATC..................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTATTTCTCATCGATC..................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCTATGCCC...............................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGCCGTC.............................................	25	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................................................................................CAG-CA----------------------------	18	4	0.25	0.00	0.00	0.25	0.00	0.00
...................................................................................................................TTGGATTAGCTCTCATCGATGC.................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................CGATTGATGATAG-CATCTCCA...................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCACCGATGC.................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCCATGC.................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGCTT...............................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGCCC...............................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGCCG...............................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................CGATTGATGATAG-CATCTCCAC..................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................................CGATTGATGATAG-CATCTCCAA..................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGATCTCATCGAT...................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGCTCTCATCGATGCC................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCGTCGATGC.................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGATCTCATCGATGC.................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTATTTCTCATCGATG..................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGGTCTCATCGATGCC................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGCC................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATAGATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCCATG..................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................ATTGGATTAGxTCTCATCC.....................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................................................................................ATTAGTTCTCATCGATGCCG...............................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................CTTGGATTAGTTCTCATCGATGC.................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGC.................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGG.................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................................................................TGTATTAGTTCTCATCGATGCCG...............................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................................................................................TATTAGTTCTCATCGATGCCG...............................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCCCATCGATGCC................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................................TCGATGCTGCTGCGCTGT......................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...................................................................................................................TTGGATTAGTTCTCATCGAC...................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00

droMoj3

T-CGTTATCGTTATC-------------------------GCTAGCGACGCTGTGCAGCCCCTCGCGATTGATGAAAG-CATCTCCAATGA-G-TA---T---TTC------GCATTGGATTAGTTCTCATCGATGTCGATGCGCTGTAT--CAG-CA----------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....................................................................................................................TGGATTAGTTCTCATCGATGTCG...............................................	23	1	298.00	297.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGT.................................................	22	1	185.00	180.00	2.00	2.00	1.00
...................................................................ATTGATGAAAG-CATCTCCAATG................................................................................................	22	1	92.00	91.00	0.00	1.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATG..................................................	21	1	59.00	59.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTC................................................	23	1	39.00	38.00	1.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGTC................................................	22	1	14.00	14.00	0.00	0.00	0.00
...................................................................ATTGATGAAAG-CATCTCCAATGT-..............................................................................................	23	1	10.00	9.00	1.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTT................................................	23	1	10.00	10.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGT.................................................	21	1	10.00	9.00	0.00	1.00	0.00
.....................................................................................................................GGATTAGTTCTCATCGATGTCGTC.............................................	24	1	9.00	9.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTCT...............................................	24	1	7.00	7.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGAT...................................................	20	1	6.00	6.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTTC...............................................	24	1	5.00	5.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGTCGTC.............................................	25	1	4.00	4.00	0.00	0.00	0.00
.................................................................CGATTGATGAAAG-CATCTCCAAT.................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATTGATGG.................................................	22	1	3.00	0.00	0.00	3.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTCG...............................................	24	1	2.00	2.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATG..................................................	20	1	2.00	2.00	0.00	0.00	0.00
...................................................................ATTGATGAAAG-CATCTCCAATGA-..............................................................................................	23	1	2.00	2.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGTCGT..............................................	24	1	2.00	2.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGC.................................................	22	1	2.00	2.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTTT...............................................	24	1	2.00	2.00	0.00	0.00	0.00
....................................................................................................................TGAATTAGTTCTCATCGATGTCG...............................................	23	1	2.00	2.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGTCGC..............................................	24	1	2.00	2.00	0.00	0.00	0.00
....................................................................................................................TGGATTATTTCTCATCGATGTCG...............................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGGTGT.................................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................................TGGATTAGTTCTCATCAATGTCG...............................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTA................................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTCTC..............................................	25	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCATCTATGTCG...............................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................ATTGATGAAAG-CATCTCCACTG................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................ATTGATGxAAG-CATCTCCAATGT-..............................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................ATTGATGAAAG-CATCTCCAATGT-C-............................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TGGCTTAGTTCTCATCGATGTCG...............................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGCTCTCATCGATGT.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTTTCATCGATGT.................................................	22	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCxTCGATGTCG...............................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTCCTCATCGATGT.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................ATTTATGAAAG-CATCTCCAATG................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTAATCGATGTC................................................	23	1	1.00	1.00	0.00	0.00	0.00
....................................................................TTGATGAAAG-CATCTCCAATG................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TGGATTxxTTCTCATCGATGTCG...............................................	21	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTCCTCATCGATGTCG...............................................	23	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................GGATTAGTTCTCATCGATGTCG...............................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTxGTTCTCATCGATGT.................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................ATTGATGAGAG-CATCTCCAATG................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................ATTGATGxAAG-CATCTCCAATG................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATAGATGT.................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................ATTGATGAAAG-CATCTCCAATT................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................CGATTGATGAACG-CATCTCCAAT.................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................ATTGATGAAAG-CAxCTCCAATG................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................TTGGATTAGTTCTCATCGATGTCC...............................................	24	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TGGATTAGTTCTCATCGATGTCT...............................................	23	1	1.00	1.00	0.00	0.00	0.00
.................................................................CGATTGATGAAAG-CATCTCC....................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...................................................................ATTGATGAAAG-CACCTCCAATG................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00

droGri2

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image							None	None				None
UNAFold Image							None	None				None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image															None	None				None
UNAFold Image															None	None				None