dme-mir-974- 12- and 20-way alignments

dme-mir-974	chrX:19445711-19445811 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 19445735-19445757
   star strand at position 19445775-19445796
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:19445696-19445826 +	AGGT---CCAGGTAA-GCTCAATT-GT-------------------CACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG--TTTCCAA-GAGCAAATATAACTTCATTGGAA-GCTAAGTGGATTTGCCCAA-AT-------CAGCTTGGTATTTAT
droSim1	chrX:15011424-15011545 +	GTA-----------A-ACTCAATT-GT-------------------CACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTGGTATTTGCG--TTTCCAA-GAACAAATATAACTTCTTTGAAA-GCTAGGTGGATTTGCCCAA-GT-------CACCTTGGTATTTA-
droSec1	super_8:1728102-1728226 +	CAGG--------TAA-ACTCGATT-GT-------------------CACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGCG--TTTCCAA-GAACAAATATAACTTCTTTGAAA-GCTAGGTGGATTTGCCCAA-GT-------CTCCTTGGTATTTA-
droYak2	Unknown	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4690:9682434-9682561 +	CAGGAAAACAGAACC-ACTAACTC-AG-------------------CACTGGGCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG--TTCCAAA-AGTCAAATATAACTTTTTTGGAA-GCTACGGGGATTTGCCCAA-GC-------CAACTTGCT------
droAna3	scaffold_13417:2478487-2478610 -	GAAT--------------CCAATC-GCGGTTGCAATCCTGGCTTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTGCTTTTAATGGTCAAATATAACTTTTTTGGAA-GCTACGAGGAGTTGTCC---------------------------
dp4	Unknown	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_181096:7946609-7946719 +	CAT---------------TCATTT-TTC------------------CAATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTC--TTTGGAA-ATTCAAATATAACTTTTTTGGAA-GCTACAAGGCAATGTCCACAAT-------CAAC-----------
droVir3	Unknown	GAAT--------A-TGA-CCAATT-ATT------------------AACTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTATTTGCGTGAATCTGA-TATCAAATAAGACTTTTTTGGTTCGCTATGAGGTATTGTTCAT-AAATAAACACGTCTGCCTATATA-
droMoj3	scaffold_6328:2908490-2908614 -	TCA------------------ATCAGA-------------------CGCTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATT-TTTGCGTGCATCTGA-TATCAAATAAAACTTTTTTGGTT-GCTGCGAGGTATTGTTGAA-ATGTAAACGTTGCTCGCTCTCTA-
droGri2	scaffold_15081:2051206-2051247 -	CAA----------------------------------------------AGGACATCTTCTGTAAGCGAGCAAAAATATAATATTTGT-------------------------------------------------------------------------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:19445696-19445826 +	NA	AGGTCCAGGTAAG---------CTC-----AATT-----GTCA---------------CCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGT--TTC--CAAG--AGCAAATATAACTTCATTGGAA-GCTAAGTGGATTTGCCC------------------------------------A-A------ATCA--GCTTGGTATTTA----T
droSim1	chrX:15011423-15011546 +	10	GTAAA-----------------CTC-----AATT-----GTCA---------------CTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTGGTATTTGCGT--TTC--CAAG--AACAAATATAACTTCTTTGAAA-GCTAGGTGGATTTGCCC------------------------------------A-A------GTCA--CCTTGGTATTTA----T
droSec1	super_8:1728102-1728227 +	5	AGGTAAA---------------CTC-----GATT-----GTCA---------------CTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGCGT--TTC--CAAG--AACAAATATAACTTCTTTGAAA-GCTAGGTGGATTTGCCC------------------------------------A-A------GTCT--CCTTGGTATTTA----T
droYak2	chr3R:7524888-7524980 +	30	AAAAAATAAT----------------------------------------------------------------------------------CCGTTTTT--TTC--GATA--GCAAAATAT-------------------------TTGTCC--AAAAGTGGAATGCCATATCTAGTTGAATTCGGAAC-A------CCCC--GCACGAAATTTC----T
droEre2	scaffold_4690:9682437-9682562 +	9	GAAAACAGAAC---------CACTA-----ACTC-----AGCA---------------CTGGGCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGT--TCC--AAAA--GTCAAATATAACTTTTTTGGAA-GCTACGGGGATTTGCCC------------------------------------A-A------GCCA--ACTTGCTG---------
droEug1	scf7180000409109:6699-6831 -	3	AAACATAAT-----------AATTAAGATTAAGA-----ATAA---------------TTGGATATGTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTT--ATT----AA--GTCGAATATAACTTTTTTGGAA-GCTAAGCGGATGTATCT------------------------------------AAA------CCCA--GCTTGATGTTTT----T
droBia1	scf7180000302069:1157324-1157449 -	29	AAGGCAATAC----A-----AATT------TAG-A----AT-----------TTAGAAAAGGTCATCTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTT--GTT--AAAA--GTCAAATATAACTTTTTTGGAA-GCTAAGAGGATTTATCC------------------------------------T-A------ACCA--GCTTG------------
droTak1	scf7180000415169:850584-850710 -	35	ATTTGGAAC-------------------------------------------TTCGAATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTT--GTT-GAAGA--GTCAAATATAACTTTTTTGGAA-GCTAAGAGGATTTGTCC------------------------------------T-A------AGCA--GCTTGGTTATTTCGAAT
droEle1	scf7180000490751:1108267-1108393 +	6	AAATCATCAT----A-----C-CTT-----CAAT-----GTTT---------------TTAGACATATACGCAAGTCAATCA------TAATTTTAATGT--TTT--CAAG--AAT--ATTAAATTTTTTTGCA---------------------GTAGCTGCAAGAGTATATGAACTTCG-----------------GTT---TGCCGATGTTTG----C
droRho1	scf7180000761121:198567-198704 -	18	AACGAG----------------CTT-----TCTC-----GAAA---------------TAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG-TTCTGAAAA--GTCAAATATAACTTTTTTGAAA-GCTACGAGGATTTGTTCCATTAACAA--------------------------------TAAAAGCA--GTGAAAGCCATA----G
droFic1	scf7180000454073:1724056-1724193 +	17	AGTGCTAAGGATACGCAA-----------TTAA-AAACAAAAA---------------AGGAGCATTTCCCCTAAGCGAGCAAAGAAGTAGTATTTGTTCGTGCT-GAAAA--CTCAAATATAACTTTTTTGAAA-GCTAAAAGGATTTGTTT------------------------------------GCA------ATCA--GCT----GCATT----T
droKik1	scf7180000302517:1176347-1176493 +	7	ATAGCCGGGACAT---------CTC-----C-GC-----CAAG---------------CTGGTCTTTTCCTCTAAGCGAGCAAAGAAGTGGTATTTGTTG-CACTTGAAATTATTCAAATATAACTTTTTTGGAA-GCTAGAAGGAGTTGCCC------------------------------------ACAAGCACACTTTAATCCCAATATTTC-TCAG
droAna3	scaffold_13417:2478487-2478598 -	18	GGTTGCA--A------------------------------TCCT-----GGCTTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTGCTTT-TAATG--GTCAAATATAACTTTTTTGGAA-GCTACGAGGAGTTGTCC--------------------------------------------------------------------
droBip1	scf7180000395874:49590-49667 -	7	ATCCCGAACCAATCGCGG-----------TTGC-A----ATCCTTGGGTGGATTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGGCGTAT-------------------------------------------------------------------------------------------------------------------------------
dp4	Unknown	NA	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	NA	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_181096:7946609-7946719 +	10	ATTCATT-------------------------TT-----TCCA---------------ATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTCT--TTG--GAAA--TTCAAATATAACTTTTTTGGAA-GCTACAAGGCAATGTCC------------------------------------ACA------ATCA--AC---------------
droVir3	scaffold_13042:917533-917679 -	24	ATCCGAATAT----GAGATTTAC-C-----AATT----ATTAA---------------CTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTATTTGCGTGAATC--TGAT--ATCAAATAAGACTTTTTTGGTTCGCTATGAGGTATTGTTC------------------------------------ATAAATAAACACG--TCTGCCTATATA----C
droMoj3	scaffold_6328:2908489-2908614 -	63	TCAATCA--------------------------------GACG---------------CTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTTTT-GCGTGCATC--TGAT--ATCAAATAAAACTTTTTTGGTT-GCTGCGAGGTATTGTTG------------------------------------AAATGTAAACGTT--GCTCGCTCTCTA----C
droGri2	scaffold_15081:2051206-2051247 -	23	CA--------------------------------------------------------AAGGACATCTTCTGTAAGCGAGCAAAAATATAATATTTGT---------------------------------------------------------------------------------------------------------------------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AGGT---CCAGGTAA-GCTCAATT-GT-------------------CACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG--TTTCCAA-GAGCAAATATAACTTCATTGGAA-GCTAAGTGGATTTGCCCAA-AT-------CAGCTTGGTATTTAT

Size

Hit Count

Total Norm

droSim1

GTA-----------A-ACTCAATT-GT-------------------CACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTGGTATTTGCG--TTTCCAA-GAACAAATATAACTTCTTTGAAA-GCTAGGTGGATTTGCCCAA-GT-------CACCTTGGTATTTA-	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...............................................................AAGCGAGCAAAGAAGTGGTATT..................................................................................	22	1	30.00	0.00	0.00	30.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-GCTAGG......................................	22	1	11.00	0.00	0.00	11.00	0.00
..........................T-------------------CACTGGTCGTGTCCTCC........................................................................................................	18	1	4.00	0.00	1.00	3.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-GCT.........................................	19	1	3.00	0.00	0.00	3.00	0.00
................................................................AGCGAGCAAAGAAGTGGTATTT.................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
.........................................................................................................ATATAACTTCTTTGAAA-GCT.........................................	20	1	3.00	0.00	1.00	2.00	0.00
...............................................................AAGCGAGCAAAGAAGTGGTATTT.................................................................................	23	1	2.00	0.00	0.00	2.00	0.00
...............................................................AAGCGAGCAAAGAAGTGGTAT...................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
................................................................AGCGAGCAAAGAAGTGGTATT..................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................AAGCGAGCAAAGAAGTGGTACT..................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-GC..........................................	18	1	1.00	0.00	0.00	1.00	0.00
...............................................................AAGCGGGCAAAGAAGTGGTATT..................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................ATATAACTTCTTTGAAA-GCTA........................................	21	1	1.00	0.00	0.00	1.00	0.00
.........................GT-------------------CACTGGTCGTGTCCTCC........................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00

droSec1

CAGG--------TAA-ACTCGATT-GT-------------------CACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGCG--TTTCCAA-GAACAAATATAACTTCTTTGAAA-GCTAGGTGGATTTGCCCAA-GT-------CTCCTTGGTATTTA-	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...............................................................AAGCGAGCAAAGAAGTAGTATT..................................................................................	22	1	1245.00	1190.00	11.00	44.00
...............................................................AAGCGAGCAAAGAAGTAGTATTT.................................................................................	23	1	185.00	181.00	1.00	3.00
..........................................................................................................TATAACTTCTTTGAAA-GCTAGG......................................	22	1	101.00	86.00	10.00	5.00
...............................................................AAGCGAGCAAAGAAGTAGTAT...................................................................................	21	1	34.00	33.00	0.00	1.00
................................................................AGCGAGCAAAGAAGTAGTATTT.................................................................................	22	1	18.00	17.00	1.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGCATT..................................................................................	22	1	14.00	14.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGAATT..................................................................................	22	1	12.00	12.00	0.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-GCTAG.......................................	21	1	6.00	6.00	0.00	0.00
...............................................................AACCGAGCAAAGAAGTAGTATT..................................................................................	22	1	6.00	6.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTA....................................................................................	20	1	5.00	5.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGGATT..................................................................................	22	1	5.00	5.00	0.00	0.00
.....................................................................................................................................TTTGCCCxA-GT-------GTCCTTGGT......	19	1	5.00	3.00	2.00	0.00
...............................................................AAGCGAGCAAAGAAGCAGTATT..................................................................................	22	1	4.00	4.00	0.00	0.00
.....................................................................................................................................TTTGCCCxA-GT-------GTCCTTGG.......	18	1	3.00	0.00	0.00	3.00
...............................................................AAGCGAGCAAAGAAGTGGTATT..................................................................................	22	1	3.00	3.00	0.00	0.00
...............................................................AAGCGAGCAAAGCAGTAGTATT..................................................................................	22	1	3.00	3.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGGAGTATT..................................................................................	22	1	3.00	3.00	0.00	0.00
...............................................................AAGCGAGAAAAGAAGTAGTATT..................................................................................	22	1	2.00	2.00	0.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-GCTAGGT.....................................	23	1	2.00	1.00	1.00	0.00
...............................................................AAGCGAGCAAAGAATTAGTATT..................................................................................	22	1	2.00	2.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGCATTT.................................................................................	23	1	2.00	2.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTCGTATT..................................................................................	22	1	2.00	2.00	0.00	0.00
..........................T-------------------CACTGGTCGTGTCCTCC........................................................................................................	18	1	2.00	0.00	1.00	1.00
......................................................................................................................................TTGCCCxA-GT-------GTCCTTGGT......	18	1	2.00	0.00	1.00	1.00
...............................................................AAGCGAGCAACGAAGTAGTATT..................................................................................	22	1	2.00	2.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGT.....................................................................................	19	1	2.00	2.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTATA..................................................................................	22	1	2.00	2.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGGATTT.................................................................................	23	1	2.00	2.00	0.00	0.00
....................................................................................................................................ATTTGCCCxA-GT-------GTCCTTG........	18	1	2.00	0.00	2.00	0.00
................................................................AGCGAGCAAAGAAGTAGTATT..................................................................................	21	1	2.00	1.00	0.00	1.00
...............................................................AATCGAGCAAAGAAGTAGTATT..................................................................................	22	1	2.00	2.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTACTATT..................................................................................	22	1	2.00	2.00	0.00	0.00
...............................................................AAGCGCGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCACAGAAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00
...............................................................AAGCCAGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
..........................................................................................................TATAACTACTTTGAAA-GCTAGG......................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAATAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCxAAGAAGTAGTATT..................................................................................	21	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTCGCATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAACGAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGAATTT.................................................................................	23	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGGAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
.........................................................................................................ATATAACTTCTTTGAAA-GCTAGG......................................	23	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAACAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................CAGCGAGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-GCAAGG......................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTACT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTATTTT................................................................................	24	1	1.00	1.00	0.00	0.00
..........................................................................................................TATAACxTCTTTGAAA-GCTAGG......................................	21	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCGAAGAAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAGGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTTGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-CCTAGG......................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGACGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
..............................................................CAAGCGAGCAAAGAAGTAGTAT...................................................................................	22	1	1.00	1.00	0.00	0.00
..........................................................................................................TACAACTTCTTTGAAA-GCTAGG......................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGTAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
.........................................................................................................CTATAACTTCTTTGAAA-GCTAGG......................................	23	1	1.00	0.00	0.00	1.00
.........................................................................................................ATATAACTTCTTTGAAA-GCTA........................................	21	1	1.00	0.00	1.00	0.00
...............................................................AAGCGAGCCAAGAAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00
...............................................................AAGCTAGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-GCTAGA......................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTCGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00
..............................................................CAAGCGAGCAAAGAAGTAGTATT..................................................................................	23	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGGAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAATATT..................................................................................	22	1	1.00	1.00	0.00	0.00
.........................GT-------------------CACTGGTCGTGTCCTCC........................................................................................................	19	1	1.00	0.00	1.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-TCTAGG......................................	22	1	1.00	1.00	0.00	0.00
...............................................................GAGCGAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	0.00	0.00	1.00
................................................................AGCGAGCAAAGAAGTAGTATTTG................................................................................	23	1	1.00	1.00	0.00	0.00
...............................................................AAGGGAGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGTGAGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
..........................................................................................................TATAACTTCTTTGxGA-GCTAGG......................................	21	1	1.00	1.00	0.00	0.00
................................................................AGCGCGCAAAGAAGTAGTATTT.................................................................................	22	1	1.00	1.00	0.00	0.00
...................................................................................................................................GATTTGCCCxA-GT-------GTCCTT.........	18	1	1.00	0.00	1.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-GCCAGG......................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGCAGTAGCATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...................................................................GAGCAAAGAAGTAGTATT..................................................................................	18	1	1.00	1.00	0.00	0.00
...............................................................AGGCGAGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGTGAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	0.00	1.00	0.00
...............................................................AAGCGAGCAAAGAAGTATTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
..........................................................................................................TATAACTTCTTTGAAA-GTTAGG......................................	22	1	1.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAGGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTATTA.................................................................................	23	1	1.00	0.00	0.00	1.00
................................................................AGCGACCAAAGAAGTAGTATTT.................................................................................	22	1	1.00	1.00	0.00	0.00
................................................................AGCGAGCAAAGAAGCAGTATTT.................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................ACGCGAGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00
...............................................................AAGCGACCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00

droYak2

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

droEre2

CAGGAAAACAGAACC-ACTAACTC-AG-------------------CACTGGGCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG--TTCCAAA-AGTCAAATATAACTTTTTTGGAA-GCTACGGGGATTTGCCCAA-GC-------CAACTTGCT------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...............................................................AAGCGAGCAAAGAAGTAGTATT..................................................................................	22	1	326.00	0.00	7.00	0.00	319.00
...............................................................AAGCGAGCAAAGAAGTAGTATTT.................................................................................	23	1	154.00	0.00	11.00	0.00	143.00
.........................................................................................................................A-GGTACGGGGATCTGCCC...........................	18	1	27.00	3.00	1.00	0.00	23.00
..........................................................................................................TATAACTTTTTTGGAA-GCTACG......................................	22	1	17.00	0.00	5.00	0.00	12.00
...............................................................AAGCTAGCAAAGAAGTAGTATT..................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
...............................................................AAGCGAGCAAAGAATTAGTATT..................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
...............................................................AAGCGAGCAAATAAGTAGTATT..................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
...............................................................AAGCGATCAAAGAAGTAGTATT..................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
...............................................................AAGCGAGCAAAGAAGCAGTATT..................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
...............................................................AAGAGAGCAAAGAAGTAGTATTT.................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...............................................................AATCGAGCAAAGAAGTAGTATT..................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................................AATCGAGCAAAGAAGTAGTATTT.................................................................................	23	1	2.00	0.00	0.00	0.00	2.00
...............................................................AATCGAGCAAAGAAGTAGTATTG.................................................................................	23	1	2.00	0.00	0.00	0.00	2.00
........................................................................AAGAAxTACTATTTGTG--TT..........................................................................	18	1	2.00	1.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAAGTATTATT..................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................................AAGCGAGCAAAGAAGCAGTATTT.................................................................................	23	1	2.00	0.00	0.00	0.00	2.00
...............................................................AGGCGAGCAAAGAAGTAGTATT..................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................................TAGCGAGCAAAGAAGTAGTATT..................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
.........................................................................................................ATATAACTTTTTTGGAA-GCTACG......................................	23	1	2.00	0.00	0.00	0.00	2.00
...............................................................AAACGAGCAAAGAAGTAGTATT..................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................................AAGCGAGCAAAGAAGTAGTATTTT................................................................................	24	1	2.00	0.00	0.00	0.00	2.00
...............................................................AAGCGAGCAAAGGAGTAGTATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAAGTATTATTC.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AACCGAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGATCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGGAGTAGTATT..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGACGTAGTATT..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAAGTAGCATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGCAGTAGTATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................CAGCGAGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAATAGTATT..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAAGTAGTACTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAGGTAGTATT..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCTAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCTAGCAAATAAGTAGTATT..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAAGTAGTATTA.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCGAAGAAGTAGTATT..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAAGTGGTATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAAGTATTATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAAGTAGTGT...................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGACCAAAGAAGTAGTATT..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGxAGTAGTATT..................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGCGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................CAGCGAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAATAAGTAGTATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGGGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTATTC.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAAGTAGTAT...................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGAAAAGAAGTAGTATT..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................GAGCGAGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................................TATAACxTTTTTGGAA-GCTACG......................................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................AAGCGAGCACAGAAGTAGTATTT.................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................................................CGAGCAAAGAAGTAGTATT..................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGCGAGCAAAGAAGTCGTATTT.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..............................................................CAAGCGAGCAAAGAAGTAGTATTT.................................................................................	24	1	1.00	0.00	0.00	0.00	1.00

droAna3

GAAT--------------CCAATC-GCGGTTGCAATCCTGGCTTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTGCTTTTAATGGTCAAATATAACTTTTTTGGAA-GCTACGAGGAGTTGTCC---------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............................................................AAGCGAGCAAAGAAGTAGTATT..................................................................................	22	1	350.00	294.00	37.00	19.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTATTT.................................................................................	23	1	113.00	91.00	17.00	5.00	0.00
..........................................................................................................TATAACTTTTTTGGAA-GCTACG......................................	22	1	79.00	74.00	0.00	5.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTAT...................................................................................	21	1	54.00	51.00	1.00	2.00	0.00
...................................................................................................GGTCGAAxATAACTTTTTT.................................................	18	1	13.00	0.00	11.00	0.00	2.00
...............................................................AAGCGAGCAAAGAAGTAGTATTTT................................................................................	24	1	11.00	7.00	4.00	0.00	0.00
................................................................AGCGAGCAAAGAAGTAGTATTT.................................................................................	22	1	9.00	5.00	4.00	0.00	0.00
..........................................................................................................TATAACTTTTTTGGAA-GCTACGT.....................................	23	1	8.00	7.00	0.00	1.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTAAT..................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
................................................................AGCGAGCAAAGAAGTAGTATT..................................................................................	21	1	4.00	4.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTGGTATT..................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTAGT..................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................................AATCGAGCAAAGAAGTAGTATT..................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTA....................................................................................	20	1	3.00	2.00	0.00	1.00	0.00
...............................................................AAGCGAGCAAAGAAGCAGTATT..................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTAGTT.................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................................TATAACTTTTTTGGAA-GCTAC.......................................	21	1	2.00	2.00	0.00	0.00	0.00
.........................................................................................................ATATAACTTTTTTGGAA-GCTAC.......................................	22	1	2.00	2.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGGAGTATT..................................................................................	22	1	2.00	1.00	0.00	1.00	0.00
...............................................................AAGCGATCAAAGAAGTAGTATT..................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTACT..................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTATTTTT...............................................................................	25	1	2.00	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTACTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGAAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTAG...................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................AGGCGAGCAAAGAAGTAGTATTTTT...............................................................................	25	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATAACTTTTTTTGAA-GCTACG......................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGAAAAGAGGTAGTATT..................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................AAGCGAGCAACGAAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................AATATAACTTTTTTGGAA-TCT.........................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTATTTC................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
...............................................................AATCGAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
................................................................AGCGAGCAAAGCAGTAGTATTT.................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAACAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AATCGAGCAAAGAAGTAGTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGACGTATTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCGAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATAACTTTTTTGCAA-GCTACG......................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGAGAGAAAAGAAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCxAAGAAGTAGTATTTT................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGATCAAAGAAGTAGTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGAGAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AGGCGAGCAAAGAAGTAGTATTTT................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATAACTTTTTTGGAA-GCTACGA.....................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAAAAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTACTTT................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................TGGTCGAAGATAACTTTTT..................................................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTATTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATAACTTTCTTGGAA-GCTACG......................................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................AAGCGGGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................................GCGAGCAAAGAAGTAGTATTG.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGCAGTAGTAGT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCTAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCTAGCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................................ATATAACTTTTTTGGAA-GCTA........................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATAACTTTTTTGGAA-GCTA........................................	20	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATAACTTTTTTAGAA-GCTACG......................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGAAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................ACGCGAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..............................................................CAAGCGAGCAAAGAAGTAGTATT..................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................GGTCGAAGATAACTTTTTT.................................................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................AAGCGAGCAATGAAGTTGTATT..................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................AAGCGAGCAAAGCAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGTAAAGAAGTAGTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAGCGAGCAAAGAAGTAGTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAACAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................TAGTTGTTTGCTTTTCATG...................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................................TATAACTTTTTTGGAA-GCTATG......................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGTAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTATTC.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
................................................................AGCGAGCAAAGAAGTAGTGTTT.................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................AGGCTAGCAAAGAAGTAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGxAGTAGTATT..................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTGTT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGCAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGATGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGTAGTT....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAATGAAGTAGTAA...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGATCAAAGAAGTAGTTT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAATGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAAGAAGAAGTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATAACTTTTATGGAA-TCTACG......................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AATCGATCAAAGAAGTAGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................GCGAGCAAAGACGTAGTATTT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00

dp4

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

CAT---------------TCATTT-TTC------------------CAATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTC--TTTGGAA-ATTCAAATATAACTTTTTTGGAA-GCTACAAGGCAATGTCCACAAT-------CAAC-----------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................................AAGCGAGCAAGAAAGTGGTATT..................................................................................	22	1	661.00	649.00	7.00	4.00	1.00
...............................................................AAGCGAGCAAGAAAGTGGTATTT.................................................................................	23	1	149.00	144.00	3.00	2.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTAT...................................................................................	21	1	51.00	50.00	0.00	1.00	0.00
..........................................................................................................TATAACTTTTTTGGAA-GCTACA......................................	22	1	5.00	4.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGAGGTATT..................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTATTTC................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTA....................................................................................	20	1	5.00	5.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGAATT..................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTxGTATT..................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGGGGTATT..................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGGATT..................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTACT..................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
...............................................................AACCGAGCAAGAAAGTGGTATT..................................................................................	22	1	2.00	1.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGCGGTATT..................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTATTTCC...............................................................................	25	1	2.00	2.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTGTT..................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGCGGTATTT.................................................................................	23	1	2.00	2.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTATTA.................................................................................	23	1	2.00	2.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGCATT..................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTATC..................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
................................................................AGCGAGCAAGAAAGTGGTATTT.................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
...............................................................AAGCGAGCGAGAAAGTGGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTATTC.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................TGAC--TTTGGAA-ATTCAAA.............................................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTCGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAATAAAGTGGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................AGCGAGCAAGAAAGTGGTATTTA................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAATTGGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGACCAAGAAAGTGGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGTAAGTGGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTATCT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTATTTT................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................ATTCAAATAAAACTGTTT..................................................	18	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAGTGAGCAAGAAAGTGGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGATATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGACAGTGGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.............................................................................GTGGTATTTGGC--TGTGGA......................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................AAGAGAGCAAGAAAGTGGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTCGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATAGCTTTTTTGGAA-GCTA........................................	20	1	1.00	0.00	0.00	1.00	0.00
...............................................................AAACGAGCAAGAAAGTGGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAGAGTGGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGCAGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTATTAA................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................TTTTTTGGAA-GCTAGGAG....................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGGTCTT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGAATGTGGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAGCGAGCAAGAAAGTGGTATT..................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..............................................................CAAGCGAGCAAGAAAGTGGTATT..................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
......................................................................GAAAAAAGTGGTATTTGT...............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................AAGCGAGCAAGAAAGTGTTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGCAAGTGGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAAGxAAGTGGTATT..................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGATCAAGAAAGTGGTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGTGAGCAAGAAAGTGGTATTT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................AAGCGAGCAxxAAAGTGGTATT..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00

droVir3

GAAT--------A-TGA-CCAATT-ATT------------------AACTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTATTTGCGTGAATCTGA-TATCAAATAAGACTTTTTTGGTTCGCTATGAGGTATTGTTCAT-AAATAAACACGTCTGCCTATATA-	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............................................................GAGCGAGCAGAGAAGTATTAT...................................................................................	21	1	347.00	340.00	0.00	1.00	6.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTATC..................................................................................	22	1	164.00	162.00	0.00	0.00	2.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTA....................................................................................	20	1	77.00	76.00	0.00	0.00	1.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTC....................................................................................	20	1	64.00	63.00	0.00	0.00	1.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTATCC.................................................................................	23	1	42.00	41.00	0.00	0.00	1.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT.....................................................................................	19	1	37.00	36.00	1.00	0.00	0.00	0.00
.........................................................................................................ATAAGACTTTTTTGGTTCGCTATG......................................	24	1	28.00	13.00	0.00	0.00	15.00	0.00
..........................................................................................................TAAGACTTTTTTGGTTCGCTATG......................................	23	1	25.00	20.00	0.00	0.00	5.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTATTT.................................................................................	23	1	24.00	23.00	0.00	0.00	0.00	1.00
...............................................................GAGCGAGCAGAGAAGTATTATT..................................................................................	22	1	19.00	18.00	1.00	0.00	0.00	0.00
..........................................................................................................TAAGACTTTTTTGGTTCGCTAT.......................................	22	1	18.00	18.00	0.00	0.00	0.00	0.00
.........................................................................................................ATAAGACTTTTTTGGTTCGCT.........................................	21	1	16.00	9.00	0.00	0.00	7.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTATTC.................................................................................	23	1	15.00	14.00	0.00	0.00	1.00	0.00
.........................................................................................................ATAAGACTTTTTTGGTTCGCTC........................................	22	1	11.00	3.00	0.00	0.00	8.00	0.00
.........................................................................................................ATAAGACTTTTTTGGTTCGCTAT.......................................	23	1	10.00	10.00	0.00	0.00	0.00	0.00
.........................................................................................................ATAAGACTTTTTTGGxTCGTTA........................................	21	1	9.00	5.00	0.00	0.00	4.00	0.00
.........................................................................................................ATAAGACTTTTTTGGTTCGCTA........................................	22	1	7.00	7.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTCC...................................................................................	21	1	6.00	6.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTATTTC................................................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TAAGACTTTTTTGGTTCGCTA........................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTCA...................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TAAGACTTTTTTGGTTCGCT.........................................	20	1	2.00	1.00	0.00	0.00	1.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTAA...................................................................................	21	1	2.00	2.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTT....................................................................................	20	1	2.00	2.00	0.00	0.00	0.00	0.00
.........................................................................................................ATAAGACTTTTTTGGTTCGCC.........................................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
..........................................................................................................TAAGACTTTTTTGGTTCGCTATC......................................	23	1	2.00	1.00	0.00	0.00	1.00	0.00
...............................................................GAGCGAGCAGAGAAGCATTC....................................................................................	20	1	2.00	2.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAAAGAAGTATTATC..................................................................................	22	1	2.00	2.00	0.00	0.00	0.00	0.00
..........................................................................................................TAAGACTTTTTTGGTTCGCTATGTC....................................	25	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGAAGAGAAGTATTC....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATCAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAxAAGTATTATTC.................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................................................................ATAAGACTTTTTTGGATCGCT.........................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGGGAAGTATTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGACAAGTATTA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGCGAAGTATTA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTACTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATC.....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGAATTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................................................................ATAAGACTTTTTTGGTTCGCTGT.......................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTAATC....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTACTATC..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................TAAGACTTTTTTGGTTCGCTATT......................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAATATT.....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAACAGAGAAGTATTA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................TGCGTGAATCTGA-TATCAAA.............................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................TAAGACTTTTTTGGTTCGCTATGT.....................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTCT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCAAGCAGAGAAGTATTA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTGT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................TAAGACTTTTTTGGCTCGCTATGT.....................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................TAAGACTTCTTTGGTTCGCTATG......................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................................................................ATAAGACTTTTTTGGTTCGCTATC......................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCCAGCAGAGAAGTATTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GTGCGAGCAGAGAAGTATTC....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................................................................ATAAGACTTTATTGGTTCGCTA........................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTACTA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGGGCAGAGAAGTATTA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATAAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGTGAGCAGAGAAGTATTATC..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTATA..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................................................................CTTTTTTGGTTCGCTATG......................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGGAGTATTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GATCGAGCAGAGAAGTATTAA...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAACTATTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATTGTT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................TAAGACTTTTTTGGxTCGTTA........................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCGGAGAAGTATTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................................................................ATAAGACTTTTTTGGTTCGCTT........................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................TAGCGAGCAGAGAAGTATTC....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCAAGCAGAGAAGTATTATC..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................GAGCAGAGAAGTATTATC..................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCGGAGAAGTATTATT..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................AGCGAGCAGAGAAGTATTAT...................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................................................................ATAAGACTTTTTTGGTTCACT.........................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................GAGCGAGCAGAGAAGGATTC....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGATGTATTATC..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGCAGTATTAT...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................GAGCGATCAGAGAAGTATT.....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................TAAGACTTTTTTGGTTCGCC.........................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
..............................................................CGAGCGAGCAGAGAAGTATTATC..................................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00

droMoj3

TCA------------------ATCAGA-------------------CGCTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATT-TTTGCGTGCATCTGA-TATCAAATAAAACTTTTTTGGTT-GCTGCGAGGTATTGTTGAA-ATGTAAACGTTGCTCGCTCTCTA-	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...............................................................GAGCGAGCAGAGAAGTATT-AT..................................................................................	21	1	128.00	125.00	3.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-A...................................................................................	20	1	112.00	109.00	2.00	1.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-....................................................................................	19	1	36.00	35.00	1.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-T...................................................................................	20	1	13.00	13.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-AA..................................................................................	21	1	12.00	11.00	0.00	1.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-ATC.................................................................................	22	1	10.00	10.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-ATT.................................................................................	22	1	8.00	8.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-C...................................................................................	20	1	7.00	7.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-ATTT................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-TT..................................................................................	21	1	2.00	2.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-ATTC................................................................................	23	1	2.00	2.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGTAGTATT-AT..................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-TC..................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAATTATT-AT..................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATT-CT..................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAACGAGCAGAGAAGTATT-AT..................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGAGAAGTATC-....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAGCTAGCAGAGAAGTATT-AT..................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................GACCGAGCAGAGAAGTATT-ATT.................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAGCGAxCAGAGAAGTATT-AT..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAGCGATCAGAGAAGTATT-AT..................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................GATCGAGCAGAGAAGTATT-....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...............................................................GAGCGAGCAGATAAGTATT-....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

droGri2

CAA----------------------------------------------AGGACATCTTCTGTAAGCGAGCAAAAATATAATATTTGT-------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image				None			None	None
UNAFold Image				None			None	None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image															None	None
UNAFold Image															None	None