Possible Orthologs for dme-mir-974

droSim1 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrX:15011423-15011546 +

81.52

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT --------GTAAACTCAATTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTGGTATTTGCGTTTCCAAGAACAAATATAACTTCTTTGAAAGCTAGGTGGATTTGCCCAAGTCACCTTGGTATTTAT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......................................AAGCGAGCAAAGAAGTGGTATT......................................................................	22	2	15.00	0.00	0.00	15.00	0.00
...............................................................................TATAACTTCTTTGAAAGCTAGG..............................	22	2	5.50	0.00	0.00	5.50	0.00
.....................TCACTGGTCGTGTCCTCC............................................................................................	18	2	2.00	0.00	0.50	1.50	0.00
...............................................................................TATAACTTCTTTGAAAGCT.................................	19	2	1.50	0.00	0.00	1.50	0.00
........................................AGCGAGCAAAGAAGTGGTATTT.....................................................................	22	2	1.50	0.00	0.00	1.50	0.00
..............................................................................ATATAACTTCTTTGAAAGCT.................................	20	2	1.50	0.00	0.50	1.00	0.00
.......................................AAGCGAGCAAAGAAGTGGTATTT.....................................................................	23	2	1.00	0.00	0.00	1.00	0.00
.......................................AAGCGAGCAAAGAAGTGGTAT.......................................................................	21	2	1.00	0.00	0.00	1.00	0.00
........................................AGCGAGCAAAGAAGTGGTATT......................................................................	21	2	0.50	0.00	0.00	0.50	0.00
.......................................AAGCGAGCAAAGAAGTGGTACT......................................................................	22	2	0.50	0.00	0.00	0.50	0.00
...............................................................................TATAACTTCTTTGAAAGC..................................	18	2	0.50	0.00	0.00	0.50	0.00
.......................................AAGCGGGCAAAGAAGTGGTATT......................................................................	22	2	0.50	0.00	0.00	0.50	0.00
..............................................................................ATATAACTTCTTTGAAAGCTA................................	21	2	0.50	0.00	0.00	0.50	0.00
....................GTCACTGGTCGTGTCCTCC............................................................................................	19	2	0.50	0.00	0.00	0.50	0.00

chrX:15011429-15011571 -

45.41

AGGTCCAGGTAAGCTCAATTGT-----------------CAC-CGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT AATTCGAATCGAACACACTTGAAAAATAAATACCAAGGTGACTTGGGCAAATCCACCTAGCTTTCAAAGAAGTTATATTTGTTCTTGGAAACGCAAATACCACTTCTTTGCTCGCTTGGAGGACACGACCA------GTGACAATTGAG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
......................................................................................................................GACAACACGACCA------GTGAC.......	18	2	0.50	0.00	0.00	0.00	0.50

droSec1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_8:1728102-1728227 +

83.58

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT AG------GTAAACTCGATTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGCGTTTCCAAGAACAAATATAACTTCTTTGAAAGCTAGGTGGATTTGCCCAAGTCTCCTTGGTATTTAT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.......................................AAGCGAGCAAAGAAGTAGTATT......................................................................	22	2	622.50	595.00	5.50	22.00
.......................................AAGCGAGCAAAGAAGTAGTATTT.....................................................................	23	2	92.50	90.50	0.50	1.50
...............................................................................TATAACTTCTTTGAAAGCTAGG..............................	22	2	50.50	43.00	5.00	2.50
.......................................AAGCGAGCAAAGAAGTAGTAT.......................................................................	21	2	17.00	16.50	0.00	0.50
........................................AGCGAGCAAAGAAGTAGTATTT.....................................................................	22	2	9.00	8.50	0.50	0.00
.......................................AAGCGAGCAAAGAAGTAGCATT......................................................................	22	2	7.00	7.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGAATT......................................................................	22	2	6.00	6.00	0.00	0.00
...............................................................................TATAACTTCTTTGAAAGCTAG...............................	21	2	3.00	3.00	0.00	0.00
.......................................AACCGAGCAAAGAAGTAGTATT......................................................................	22	2	3.00	3.00	0.00	0.00
.........................................................................................................TTTGCCCxAGTGTCCTTGGT......	19	1	5.00	3.00	2.00	0.00
.......................................AAGCGAGCAAAGAAGTAGGATT......................................................................	22	2	2.50	2.50	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTA........................................................................	20	2	2.50	2.50	0.00	0.00
.......................................AAGCGAGCAAAGAAGCAGTATT......................................................................	22	2	2.00	2.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGGAGTATT......................................................................	22	2	1.50	1.50	0.00	0.00
.......................................AAGCGAGCAAAGAAGTGGTATT......................................................................	22	2	1.50	1.50	0.00	0.00
.........................................................................................................TTTGCCCxAGTGTCCTTGG.......	18	1	3.00	0.00	0.00	3.00
.......................................AAGCGAGCAAAGCAGTAGTATT......................................................................	22	2	1.50	1.50	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGT.........................................................................	19	2	1.00	1.00	0.00	0.00
.......................................AAGCGAGCAACGAAGTAGTATT......................................................................	22	2	1.00	1.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTCGTATT......................................................................	22	2	1.00	1.00	0.00	0.00
........................................................................................................ATTTGCCCxAGTGTCCTTG........	18	1	2.00	0.00	2.00	0.00
.......................................AAGCGAGCAAAGAATTAGTATT......................................................................	22	2	1.00	1.00	0.00	0.00
..........................................................................................................TTGCCCxAGTGTCCTTGGT......	18	1	2.00	0.00	1.00	1.00
...............................................................................TATAACTTCTTTGAAAGCTAGGT.............................	23	2	1.00	0.50	0.50	0.00
.......................................AAGCGAGCAAAGAAGTAGGATTT.....................................................................	23	2	1.00	1.00	0.00	0.00
.......................................AATCGAGCAAAGAAGTAGTATT......................................................................	22	2	1.00	1.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTATA......................................................................	22	2	1.00	1.00	0.00	0.00
.......................................AAGCGAGAAAAGAAGTAGTATT......................................................................	22	2	1.00	1.00	0.00	0.00
.....................TCACTGGTCGTGTCCTCC............................................................................................	18	2	1.00	0.00	0.50	0.50
.......................................AAGCGAGCAAAGAAGTAGCATTT.....................................................................	23	2	1.00	1.00	0.00	0.00
........................................AGCGAGCAAAGAAGTAGTATT......................................................................	21	2	1.00	0.50	0.00	0.50
.......................................AAGCGAGCAAAGAAGTACTATT......................................................................	22	2	1.00	1.00	0.00	0.00
.......................................AAGCGAGCACAGAAGTAGTATTT.....................................................................	23	2	0.50	0.50	0.00	0.00
........................................AGCGCGCAAAGAAGTAGTATTT.....................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGAAATAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAATATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGTAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCTAGCAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
...............................................................................TATAACTACTTTGAAAGCTAGG..............................	22	2	0.50	0.50	0.00	0.00
........................................AGCGAGCAAAGAAGTAGTATTTG....................................................................	23	2	0.50	0.50	0.00	0.00
.......................................GAGCGAGCAAAGAAGTAGTATTT.....................................................................	23	2	0.50	0.00	0.00	0.50
.......................................AAGCGAGCAAAGAAGTTGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGCAGTAGCATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGACGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
..............................................................................CTATAACTTCTTTGAAAGCTAGG..............................	23	2	0.50	0.00	0.00	0.50
.......................................AAGCGAGCAAAGAAGTAGTATTA.....................................................................	23	2	0.50	0.00	0.00	0.50
.......................................AAGTGAGCAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGAAGTATTATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................................................................................GATTTGCCCxAGTGTCCTT.........	18	2	0.50	0.00	0.50	0.00
.......................................AAGCGAGCAAACAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
...............................................................................TATAACxTCTTTGAAAGCTAGG..............................	21	2	0.50	0.50	0.00	0.00
..............................................................................ATATAACTTCTTTGAAAGCTAGG..............................	23	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAGGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
...............................................................................TATAACTTCTTTGAAAGTTAGG..............................	22	2	0.50	0.00	0.00	0.50
.......................................AAGTGAGCAAAGAAGTAGTATTT.....................................................................	23	2	0.50	0.00	0.50	0.00
........................................AGCGACCAAAGAAGTAGTATTT.....................................................................	22	2	0.50	0.50	0.00	0.00
...............................................................................TACAACTTCTTTGAAAGCTAGG..............................	22	2	0.50	0.50	0.00	0.00
...............................................................................TATAACTTCTTTGAAAGCAAGG..............................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGAGGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
...............................................................................TATAACTTCTTTGAAATCTAGG..............................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTACT......................................................................	22	2	0.50	0.50	0.00	0.00
...............................................................................TATAACTTCTTTGAAAGCTAGA..............................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCxAAGAAGTAGTATT......................................................................	21	2	0.50	0.50	0.00	0.00
...............................................................................TATAACTTCTTTGAAAGCCAGG..............................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGAAGTCGTATTT.....................................................................	23	2	0.50	0.50	0.00	0.00
.......................................AAGCGCGCAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................CAGCGAGCAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
...............................................................................TATAACTTCTTTGxGAGCTAGG..............................	21	2	0.50	0.50	0.00	0.00
......................................CAAGCGAGCAAAGAAGTAGTATT......................................................................	23	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGGAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGGAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
...........................................GAGCAAAGAAGTAGTATT......................................................................	18	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGAATTT.....................................................................	23	2	0.50	0.50	0.00	0.00
....................GTCACTGGTCGTGTCCTCC............................................................................................	19	2	0.50	0.00	0.50	0.00
.......................................AAGCGAGCAAAGAAGTCGCATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTATTTT....................................................................	24	2	0.50	0.50	0.00	0.00
.......................................AAGCCAGCAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAGCGACCAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
......................................CAAGCGAGCAAAGAAGTAGTAT.......................................................................	22	2	0.50	0.50	0.00	0.00
..............................................................................ATATAACTTCTTTGAAAGCTA................................	21	2	0.50	0.00	0.50	0.00
.......................................AAGCGAGCCAAGAAGTAGTATTT.....................................................................	23	2	0.50	0.50	0.00	0.00
.......................................AAGCGAGCGAAGAAGTAGTATTT.....................................................................	23	2	0.50	0.50	0.00	0.00
.......................................ACGCGAGCAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
.......................................AAACGAGCAAAGAAGTAGTATTT.....................................................................	23	2	0.50	0.50	0.00	0.00
.......................................AAGGGAGCAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00
........................................AGCGAGCAAAGAAGCAGTATTT.....................................................................	22	2	0.50	0.50	0.00	0.00
...............................................................................TATAACTTCTTTGAAACCTAGG..............................	22	2	0.50	0.50	0.00	0.00
.......................................AGGCGAGCAAAGAAGTAGTATT......................................................................	22	2	0.50	0.50	0.00	0.00

super_8:1728103-1728218 -

47.69

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAA-TCAGCTTGGTATTTAT AAGGA--GACTT--------------GGGCAAATCCACCTAGCTTTCAAAGAAGTTATATTTGTTCTTGGAAACGCAAATACTACTTCTTTGCTCGCTTGGAGGACACGACCAGTGACAATCGAGTTTACCT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....................................................................................CTTCTTTGCTGGCTTCGA..............................	18	2	0.50	0.00	0.50	0.00

super_229:15475-15547 +

30.59

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ---------------------------------------------------------TATTTGTATATTCCACACCCATTCTAA-TTCACAGAAGCCAAAAGTGTATCGCACGAACCTTTTGAAAAATTTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................................................AAAGTATATCGCACGAAC...............	18	1	1.00	0.00	1.00	0.00

super_2:1162313-1162341 -

19.38

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
-----------------------------------------------------------------------------------------------------TGAATTTGGCCAAATCATCTTTGTATTTA-

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_90:72696-72717 +

11.12

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT GCCTT------------------------------------------------------------------------------------------------------------AAATATATTGGT-TTTGT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....T------------------------------------------------------------------------------------------------------------AAAAACATTGGT-TTTGT	18	1	15.00	1.00	11.00	3.00

None

droYak2 - 17 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr3R:7524888-7524980 +

36.43

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGG----------AAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT A------------------------------------------------AAAAATAATCCGTTTTTTTCGATAGCAAAATATTTGTCCAAAAGTGGAATGCCATATCTAGTTGAATTCGGAACACCCCGCACGAAATTTCT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................................TAGTTGTCCAAAAGTGGAATGCCA......................................	24	2	9.00	2.50	0.00	6.00	0.50	0.00
...............................................................................TAGTTGTCCAAAAGTGGAATGCCATA....................................	26	2	2.00	0.50	0.00	1.50	0.00	0.00
............................................................................AAATAGTTGTCCAAAAGTGGAATGCCA......................................	27	2	1.00	0.50	0.00	0.50	0.00	0.00
............................................................................AAATAGTTGTTCAAAAGTGGAATGCC.......................................	26	2	0.50	0.00	0.00	0.50	0.00	0.00
...............................................................................TAGTTGTCCAAATGTGGAATGCCATA....................................	26	2	0.50	0.00	0.00	0.50	0.00	0.00
.................................................................................GTTGTCCAAAAGTGGAATGCC.......................................	21	2	0.50	0.00	0.00	0.50	0.00	0.00
...............................................................................TAGTTGTCCAAAAGTGGAATGCCAT.....................................	25	2	0.50	0.00	0.00	0.50	0.00	0.00
...............................................................................TAGTTGTCCAAAAGTGGAATGCC.......................................	23	2	0.50	0.00	0.50	0.00	0.00	0.00
.........................................................................................AAAGxGGAATGGCATATC..................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................................TAATTGTCCAAAAGTGGAATGCCA......................................	24	2	0.50	0.50	0.00	0.00	0.00	0.00
.................................................................................GTTGTCCAAAAGTAGAATGCC.......................................	21	2	0.50	0.00	0.00	0.00	0.00	0.50
..............................................................................CTAGTTGTCCAAAAGTGGAATGCCATA....................................	27	2	0.50	0.00	0.00	0.50	0.00	0.00
...............................................................................TAGTTGTCCAAAAGTGGAATGCCAC.....................................	25	2	0.50	0.50	0.00	0.00	0.00	0.00
................................................................................AGTTGTCCAAAAGTGGAATGCCATA....................................	25	2	0.50	0.00	0.50	0.00	0.00	0.00
..........................................................................AAAAATAGTTGTCCAAAAGTGGAA...........................................	24	2	0.50	0.00	0.00	0.50	0.00	0.00
...............................................................................TAGTTGTCCAAAAGTGGAATTCCA......................................	24	2	0.50	0.00	0.00	0.00	0.50	0.00
............................................................................AAATAGTTGTTCAAAAGTGGA............................................	21	2	0.50	0.00	0.00	0.50	0.00	0.00

chr2L:21928721-21928787 -

29.02

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT AGAG-----TAAGC--------------------------------------------ATACAGACTTCAG-----AGACATAGGAGCAGCGGAAGT-TTGTAGAT---------TCATGTTGATATTTTT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................ATACAGACTCCAG-----AGACATAG...............................................	21	2	9.00	0.00	1.50	5.50	2.00	0.00
.............................................................................................AAGT-TTGTCGAT---------TCATGTTGC.......	21	4	2.25	0.00	0.75	1.25	0.25	0.00
............................................................................................CAAGT-TTGTCGAT---------TCATGTTG........	21	2	2.50	0.00	0.50	1.50	0.50	0.00
..........................................................ATACAGACTCCAG-----AGACATA................................................	20	3	1.33	0.00	0.00	1.33	0.00	0.00
................................................................................ATAGGAGCAGCGCAAGT-TTGTC............................	22	2	1.50	0.00	0.00	1.50	0.00	0.00
...........................................................................................GCAAGT-TTGTCGAT---------TCATGTT.........	21	2	1.00	0.00	0.00	0.50	0.50	0.00
..........................................................ATACAGACTCCAG-----GGACATA................................................	20	3	0.67	0.00	0.00	0.67	0.00	0.00
.............C--------------------------------------------ATACAGACTCCAG-----GGAC...................................................	18	3	0.67	0.00	0.00	0.00	0.00	0.67
............GC--------------------------------------------ATACAGACTCCAG-----AGACAT.................................................	21	3	0.67	0.00	0.00	0.67	0.00	0.00
.............C--------------------------------------------ATACAGACTCCAG-----AGACATA................................................	21	3	0.67	0.00	0.00	0.67	0.00	0.00
........................................................................................AGCGCAAGT-TTGTCGAT---------T...............	18	3	0.33	0.00	0.00	0.00	0.00	0.33
...............................................................................CATAGAAGCAGCGCAAGT-TTG..............................	21	2	0.50	0.00	0.00	0.00	0.00	0.50
..........................................................ATACAGACTCCAG-----AGACATCG...............................................	21	2	0.50	0.00	0.00	0.00	0.50	0.00
.....................................................................AG-----AGACATAGAAGCAGCGCAAGT-.................................	23	2	0.50	0.00	0.00	0.50	0.00	0.00
..........CAGC--------------------------------------------ATACAGACTCCAG-----AG.....................................................	19	4	0.25	0.00	0.00	0.00	0.00	0.25
............................................................................AGACATAGAAGCAGCGCAAGT-T................................	22	2	0.50	0.00	0.00	0.50	0.00	0.00
................................................................................ATAGAAGCAGCGCAAGT-TTG..............................	20	2	0.50	0.00	0.00	0.50	0.00	0.00
..........................................................ATACAGACTCCAG-----AGACAAA................................................	20	4	0.25	0.00	0.00	0.25	0.00	0.00
...........................................................TACAGACTCCAG-----AGACATAG...............................................	20	2	0.50	0.00	0.00	0.50	0.00	0.00
..........................................................................................CGCAAGT-TTGTCGAT---------TCATG...........	20	2	0.50	0.50	0.00	0.00	0.00	0.00
...........................................................TACAGACTCCAG-----GGACATAG...............................................	20	2	0.50	0.00	0.00	0.50	0.00	0.00
.........TAAGC--------------------------------------------ATACAGACTTCAG-----GGACATAGA..............................................	27	2	0.50	0.00	0.00	0.50	0.00	0.00
.........TAAGC--------------------------------------------ATACAGACTCCAG-----AGACAGA................................................	25	3	0.33	0.00	0.00	0.33	0.00	0.00
............TC--------------------------------------------ATACAGACTCCAG-----AGA....................................................	18	3	0.33	0.33	0.00	0.00	0.00	0.00
...............................................................................................GT-TTGTCGAT---------TCATGTTGC.......	19	4	0.25	0.00	0.25	0.00	0.00	0.00
.................................................................................TAGAAGCAGCGCAAGT-TTG..............................	19	4	0.25	0.25	0.00	0.00	0.00	0.00
.........TAAGC--------------------------------------------ATACAGACTCCAG-----AG.....................................................	20	4	0.25	0.25	0.00	0.00	0.00	0.00
.............C--------------------------------------------ATACAGACTCCGG-----AGAC...................................................	18	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................AGACATAGAAGCAGCGCAAGT-TT...............................	23	2	0.50	0.00	0.00	0.50	0.00	0.00
............................................................................AGACATAGAAGCAGCGCAAGT-TTG..............................	24	2	0.50	0.00	0.00	0.50	0.00	0.00
..........................................................ATACAGAATCCAG-----AGACATA................................................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
..........................................................ATACAGACTCCAG-----AGCCATA................................................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
..........................................................ATACAGACTCCGG-----AGACATAG...............................................	21	2	0.50	0.00	0.00	0.50	0.00	0.00
...........AGC--------------------------------------------ATACATACTCCAG-----AGACA..................................................	21	3	0.33	0.00	0.00	0.00	0.33	0.00
..........................................................................................CGCAAGT-TTGTCGAT---------TCATGT..........	21	2	0.50	0.00	0.00	0.00	0.00	0.50
........................................................................................AGCGCAAGT-TTGTAGAT---------TCATGTTGC.......	26	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................AGAAGCAGCGCAAGT-TTGT.............................	19	2	0.50	0.00	0.00	0.50	0.00	0.00
.............C--------------------------------------------ATACAGACTCCAG-----GGACATA................................................	21	3	0.33	0.00	0.00	0.33	0.00	0.00

chr3L:693154-693207 +

20.93

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT AATACCCGTTAC-----------------------------------------------------------------------------TCGTAGAGTAAAAGGGTATACTAGAAATACTTTGAAATATGT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.........................................................................................TCGTAGAGTAAAAGGGTATACTAGA.................	25	16	4.63	2.06	0.00	2.44	0.06	0.06
.........................................................................................TCGTAGAGTAAAAGGGTATACT....................	22	18	2.61	0.44	0.00	2.17	0.00	0.00
.........TAC-----------------------------------------------------------------------------TCGTAGAGTAAAAGGGT.........................	20	19	1.74	0.00	0.00	1.74	0.00	0.00
.........................................................................................TCGTAGAGTAAAAGGGTATACTAG..................	24	16	1.19	0.50	0.00	0.63	0.00	0.06
.........................................................................................TCGTAGAGTAAAAGGGTATACTAGAT................	26	16	1.13	0.25	0.00	0.75	0.13	0.00
..........AC-----------------------------------------------------------------------------TCGTAGAGTAAAAGGGT.........................	19	19	0.42	0.05	0.00	0.37	0.00	0.00
.........................................................................................TCGTAGAGTAAAAGGGTATA......................	20	19	0.42	0.00	0.00	0.37	0.05	0.00
.........................................................................................TCGTAGAGTAAAAGGGTATACTA...................	23	18	0.39	0.00	0.00	0.39	0.00	0.00
...........................................................................................GTAGAGTAAAAGGGTATACT....................	20	18	0.28	0.00	0.00	0.17	0.00	0.11
.........................................................................................TTGTAGAGTAAAAGGATATACTAGA.................	25	14	0.36	0.21	0.00	0.14	0.00	0.00
.........TAC-----------------------------------------------------------------------------TCGTAGAGTAATAGGGT.........................	20	19	0.21	0.00	0.00	0.21	0.00	0.00
.........................................................................................TCGTAGAGTAAAAAGGTATACTAGA.................	25	16	0.25	0.25	0.00	0.00	0.00	0.00
..........................................................................................CGTAGAGTAAAAGGGTATACTA...................	22	18	0.22	0.00	0.00	0.22	0.00	0.00
.........TAC-----------------------------------------------------------------------------TCGTAGAGTAAAAGGGTA........................	21	19	0.16	0.00	0.00	0.16	0.00	0.00
.ATACCCATTAC-----------------------------------------------------------------------------TCGTTGAGT.................................	20	10	0.30	0.00	0.00	0.30	0.00	0.00
..........AC-----------------------------------------------------------------------------TCGTAGAGTAAAAGGGTATACT....................	24	18	0.17	0.00	0.00	0.17	0.00	0.00
.........................................................................................TCGTAGAGTAAAAGGGTATACTATA.................	25	18	0.17	0.00	0.00	0.17	0.00	0.00
........TTTC-----------------------------------------------------------------------------TCGTAGAGTAAAAGGGT.........................	21	19	0.16	0.00	0.00	0.11	0.05	0.00

chrU:27132279-27132301 +

10.08

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAGCAGCCACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chr2h_random:563415-563437 +

10.08

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAGCTGCTACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chrU:25388613-25388635 +

10.08

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

None

chr2R:2960517-2960539 -

9.3

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAACTGCCACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
...............................................................................................................CAAAACTGCCACGCCCACAC	21	19	0.05	0.00	0.00	0.00	0.00	0.05
.............................................................................................................CCCAAAACTGCCACGTCAACA.	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................................................CCCAAAACTGCCACGCCCAC..	20	14	0.07	0.07	0.00	0.00	0.00	0.00
.............................................................................................................CCAAAAACTGCGACGCCCACA.	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chr3h_random:789835-789857 -

9.3

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAGCTGCCACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
...............................................................................................................CAAAACTGCCACGCCCACAC	21	19	0.05	0.00	0.00	0.00	0.00	0.05
.............................................................................................................CCCAAAACTGCCACGCCCAC..	20	14	0.07	0.07	0.00	0.00	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chrU:447715-447737 -

9.3

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAGCTGCCACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
...............................................................................................................CAAAACTGCCACGCCCACAC	21	19	0.05	0.00	0.00	0.00	0.00	0.05
.............................................................................................................CCCAAAACTGCCACGCCCAC..	20	14	0.07	0.07	0.00	0.00	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chrU:452130-452152 -

9.3

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAGCTGCCACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
...............................................................................................................CAAAACTGCCACGCCCACAC	21	19	0.05	0.00	0.00	0.00	0.00	0.05
.............................................................................................................CCCAAAACTGCCACGCCCAC..	20	14	0.07	0.07	0.00	0.00	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chrU:20133210-20133232 -

9.3

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAGCTGCCACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
...............................................................................................................CAAAACTGCCACGCCCACAC	21	19	0.05	0.00	0.00	0.00	0.00	0.05
.............................................................................................................CCCAAAACTGCCACGCCCAC..	20	14	0.07	0.07	0.00	0.00	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chrU:21593072-21593094 -

9.3

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAGCTGCCACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
...............................................................................................................CAAAACTGCCACGCCCACAC	21	19	0.05	0.00	0.00	0.00	0.00	0.05
.............................................................................................................CCCAAAACTGCCACGCCCAC..	20	14	0.07	0.07	0.00	0.00	0.00	0.00
................................................................................................................AAAGCTGCCACGCCCACAC	21	4	0.25	0.00	0.00	0.25	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chrX:5150368-5150390 +

9.3

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAGCTGCCACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
...............................................................................................................CAAAACTGCCACGCCCACAC	21	19	0.05	0.00	0.00	0.00	0.00	0.05
.............................................................................................................CCCAAAACTGCCACGCCCAC..	20	14	0.07	0.07	0.00	0.00	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chr3R:1106713-1106735 +

9.3

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAGCTGCCACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
...............................................................................................................CAAAACTGCCACGCCCACAC	21	19	0.05	0.00	0.00	0.00	0.00	0.05
.............................................................................................................CCCAAAACTGCCACGCCCAC..	20	14	0.07	0.07	0.00	0.00	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chr3R:1098657-1098679 +

9.3

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ------------------------------------------------------------------------------------------------------------GCCCAAAGCTGCCACGCCCACAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................CCTAAAGCTGCCACGCCCACA.	21	15	0.07	0.00	0.00	0.00	0.07	0.00
................................................................................................................AAAGCTGCCACCCCCACAC	19	15	0.07	0.07	0.00	0.00	0.00	0.00
...............................................................................................................CAAAACTGCCACGCCCACAC	21	19	0.05	0.00	0.00	0.00	0.00	0.05
.............................................................................................................CCCAAAACTGCCACGCCCAC..	20	14	0.07	0.07	0.00	0.00	0.00	0.00
..............................................................................................................CTAAAGCTGCCACGCCCACAC	21	15	0.07	0.00	0.00	0.07	0.00	0.00

None

chrU:4930111-4930129 -

8.53

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
AAA----------------------------------------------------------------------------------------------------------------ATGATTTGAAATTTTT

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

None

chr2h:787008-787008 +

0.78

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

None

droEre2 - 14 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4690:9682437-9682562 +

70.83

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT GAAAACAGAACCACTAACTCAGCACTGGGCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTCCAAAAGTCAAATATAACTTTTTTGGAAGCTACGGGGATTTGCCCAAGCCAACTTGCTG-----	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......................................AAGCGAGCAAAGAAGTAGTATT......................................................................	22	1	326.00	0.00	7.00	0.00	319.00
.......................................AAGCGAGCAAAGAAGTAGTATTT.....................................................................	23	1	154.00	0.00	11.00	0.00	143.00
..............................................................................................AGGTACGGGGATCTGCCC...................	18	1	27.00	3.00	1.00	0.00	23.00
...............................................................................TATAACTTTTTTGGAAGCTACG..............................	22	1	17.00	0.00	5.00	0.00	12.00
.......................................AAGCTAGCAAAGAAGTAGTATT......................................................................	22	1	8.00	0.00	0.00	0.00	8.00
.......................................AAGCGAGCAAAGAATTAGTATT......................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................AAGCGAGCAAATAAGTAGTATT......................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................AAGCGATCAAAGAAGTAGTATT......................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................AAGAGAGCAAAGAAGTAGTATTT.....................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................AAGCGAGCAAAGAAGCAGTATT......................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................AATCGAGCAAAGAAGTAGTATTT.....................................................................	23	1	2.00	0.00	0.00	0.00	2.00
.......................................AAGCGAGCAAAGAAGCAGTATTT.....................................................................	23	1	2.00	0.00	0.00	0.00	2.00
.......................................AAGCGAGCAAAGAAGTATTATT......................................................................	22	1	2.00	0.00	0.00	0.00	2.00
.......................................TAGCGAGCAAAGAAGTAGTATT......................................................................	22	1	2.00	0.00	0.00	0.00	2.00
.......................................AGGCGAGCAAAGAAGTAGTATT......................................................................	22	1	2.00	0.00	0.00	0.00	2.00
..............................................................................ATATAACTTTTTTGGAAGCTACG..............................	23	1	2.00	0.00	0.00	0.00	2.00
.......................................AATCGAGCAAAGAAGTAGTATTG.....................................................................	23	1	2.00	0.00	0.00	0.00	2.00
.......................................AAACGAGCAAAGAAGTAGTATT......................................................................	22	1	2.00	0.00	0.00	0.00	2.00
.......................................AAGCGAGCAAAGAAGTAGTATTTT....................................................................	24	1	2.00	0.00	0.00	0.00	2.00
................................................AAGAAxTACTATTTGTGTT................................................................	18	2	1.00	0.50	0.00	0.00	0.50
.......................................AATCGAGCAAAGAAGTAGTATT......................................................................	22	1	2.00	0.00	0.00	0.00	2.00
.......................................AAGCGAGCAAAGAAGTCGTATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGxAGTAGTATT......................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................CAGCGAGCAAAGAAGTAGTATT......................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.......................................AAGCGAGCGAAGAAGTAGTATT......................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGAAGTAGTACTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGAAGTAGCATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGGGCAAAGAAGTAGTATT......................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.......................................AAGCGAGCAAAGAGGTAGTATT......................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGAAGTAGTGT.......................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGAAGTAGTATTC.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AACCGAGCAAAGAAGTAGTATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGCAGTAGTATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGAAGTATTATTC.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGAAATAGTATT......................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGGAGTAGTATT......................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGACGTAGTATT......................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..........................................CGAGCAAAGAAGTAGTATT......................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.......................................CAGCGAGCAAAGAAGTAGTATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGACCAAAGAAGTAGTATT......................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGAAGTAGTATTA.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAATAAGTAGTATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGCGCAAAGAAGTAGTATT......................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCTAGCAAAGAAGTAGTATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGAAAAGAAGTAGTATT......................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TATAACxTTTTTGGAAGCTACG..............................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................AAGCTAGCAAATAAGTAGTATT......................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGAAGTATTATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGATCAAAGAAGTAGTATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGAAGTGGTATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCACAGAAGTAGTATTT.....................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.......................................AAGCGAGCAAAGGAGTAGTATTT.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAGCAAAGAAGTAGTAT.......................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................GAGCGAGCAAAGAAGTAGTATT......................................................................	22	1	1.00	0.00	0.00	0.00	1.00
......................................CAAGCGAGCAAAGAAGTAGTATTT.....................................................................	24	1	1.00	0.00	0.00	0.00	1.00

scaffold_4820:9737866-9737992 +

49.98

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGG-ATTTGCCCAAATCAGCTTGGTATTTAT
ACGCGCCGCTGTG--TCATGATTAGTGGATA-GTCCAGTGGCTGGACAATGGCGTAGTATCTGCGTGGAAAGGAGGAAGAGGATGGTCACTGGAAACTATGAAGCAACTATTC-AATTTGATGGGTATTTA-

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4690:9682694-9682813 +

45.48

AGGTCCAGGT----AAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCA---AGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT CTTTCCTATTTGCATATCTCCATTTCCATCGCTC--TTTCTTTAGCCGAGTTAAGGGT----A--------TCTGATAGTCGAAAATATTATTTAGATTGCAGTTAGATTACTCTACTT--GTCATATCGGTAATT--	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.................CTGCATTTCCGTCGCTC--TTT...................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.................................................GTAAAGGGT----A--------TCTGATAGT..........................................................	19	17	0.06	0.06	0.00	0.00	0.00
...................................................AAAGGGT----A--------TCTGATACTCG........................................................	19	5	0.20	0.00	0.00	0.00	0.20
........................................................GT----A--------TCTGATAGTCGAGGA....................................................	18	12	0.08	0.00	0.00	0.00	0.08

scaffold_4929:6344922-6345067 -

38.76

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGT---AGTATTTGTGTTTCC--------AAGAGCAAATATAACTTCAT---------TGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ATGCACCAACCAATGTAGTT---CGAAACTATGCTATACGTAAGTGTACATAAGTAAAAACATTTGTAGTCTACATGTAAAATTAGTATATATTAATTTCCTGCTGCCAATTGCCGTTAGGTGGCGTCGTATT--TTGTATTGAAAACATT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................................................................................................................ATAGGTGGCGGCGTATT--T...............	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4512:1018033-1018174 +

37.16

AG----------GTCCAGGTAAGCTCAATTGTCACCGGTCAT------------------------GTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT AGTAACATAGTTATTTATATAAGCTTTCTTATGATCCCTCAAGCAGATATATGTATGATAAAGTCTTTTGTTGTAGCCTATATGAAATTAAAATTTAAGTTCCCGACGGAGAACTTA-----------------------CTCCTAAGATTACTTTTTTAGATGA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.............................................GAAATATGxATGATAAAGT.....................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4770:12885242-12885292 -

21.96

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
A-----------------------------------------------------------------------------ATACAACAAATTTAAAAGTGATAAAAATTTGTTCAATTTAAATT---ATTTAC

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4770:12407225-12407270 -

18.57

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT----- A----------------------------------------------------------------------------------------TCAATAGCCGAGTCGATCTGAAAAATGTTG--TGGTATTTTTACACT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........................................................................................AATAGCCGAGTCGAACTGC..........................	19	6	0.17	0.17	0.00	0.00	0.00
A----------------------------------------------------------------------------------------TTAATAGCCGTGTCGAT..............................	18	6	0.17	0.17	0.00	0.00	0.00

scaffold_4929:2761460-2761491 +

13.47

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT C------------------------------------------------------------------------------------------------TAAATATCTGCATTCAAAT---TTAGAAATTTAT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
......................................................................................................ATCTGCATTCAAAT---TTGGAA......	20	17	0.18	0.06	0.00	0.00	0.12
........................................................................................................CTGCATTCAAAT---TTGGAAATTT..	22	47	0.02	0.02	0.00	0.00	0.00
......................................................................................................ATCTGCATTCAAAT---TTAAAA......	20	24	0.04	0.00	0.00	0.00	0.04
......................................................................................................ATCTGCATTCAAAT---TTGGA.......	19	17	0.06	0.00	0.00	0.00	0.06
.......................................................................................................TCTGCATTCAAAT---TTGGA.......	18	21	0.05	0.00	0.00	0.00	0.05
......................................................................................................ATCTGCATTGAAAT---TTAGAATTT...	23	14	0.07	0.00	0.00	0.00	0.07
.....................................................................................................AATCTGCGTTCAAAT---TTAGAA......	21	47	0.02	0.02	0.00	0.00	0.00
.................................................................................................TAAAAATCTGCATTCAAAT---TTATAAAT....	27	45	0.02	0.00	0.00	0.00	0.02

scaffold_4770:1063911-1063932 +

8.25

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4820:5781131-5781140 +

6.98

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4512:764353-764361 +

5.07

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4929:18065520-18065524 +

3.1

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
TG------------------------------------------------------------------------------------------------------------------------------TAT

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4784:16120424-16120428 -

3.1

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4770:17462719-17462720 +

1.55

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
AT---------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

droFic1 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000454073:1724056-1724193 +

61.22

AGGTCCAGGTAAGCTCAATTGTCACC-------GGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCC---AAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCC-AAATCAGCTTGGTATTTAT
AGTGCTAAGGATACGCAATTAAAAACAAAAAAGGAGCATTTCCCCTAAGCGAGCAAAGAAGTAGTATTTGTTCGTGCTGAAAACTCAAATATAACTTTTTTGAAAGCTAAAAGGATTTGTTTGCAATCAGCT--GCATTT--

Size

Hit Count

Total Norm

scf7180000453927:1434115-1434121 +

5.43

Size

Hit Count

Total Norm

None

droEug1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409109:6699-6831 -

66.82

AGGTCC---AGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAAT-CAGCTTGGTATTTAT
AAACATAATAATTAAGATTAAGAATAATTGGATATGTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTT--TATTAAGTCGAATATAACTTTTTTGGAAGCTAAGCGGATGTATCTAAACCCAGCTTGATGTTTTT

Size

Hit Count

Total Norm

droBia1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302069:1157324-1157449 -

72.09

AGGTCCAGGTAAGCTC---AATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
AAGGCAATACAAATTTAGAATTTAGAAAAGGTCATCTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTTGTTAAAAGTCAAATATAACTTTTTTGGAAGCTAAGAGGATTTATCCTAACCAGCTTG--------

Size

Hit Count

Total Norm

scf7180000300013:23945-24027 +

35.42

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAA---CTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATT--TAT
A----------------------------------------------AAATAAGTATTTTTC-TTAATCCTTGAGGATTTATAAAGGCCTCATTTTAT------AACATCTGCTTCCTTCATTTTGGGTTTGAAAT

Size

Hit Count

Total Norm

scf7180000302386:230752-230832 -

33.71

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
------------------------------------TCCGACCCCATAAAGCAAAAGTATTTATATTCTTAATTAGG-----------ATCACTAGCCAAGTCGATTTAGCCATATCCGTC---TATCCGT

Size

Hit Count

Total Norm

scf7180000301615:3392-3566 +

29.73

AGGTC-CAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAA---GAAGTAGTATTTGTGTTTCCAAGAGCAAATAT-------------------------------AACTTCATTGG--------------AAGC-TAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
AAATTTTAAACTTTTTCTACTATCGCCG-CAATGTCTCCTGAATA--CAAAAAAAAAATATTTTCTAAAACAATAAGATCGAGCGTTGCAAAAACCGACCCACTTAATTAAATTCGTAACTTATTTGAAACATATTTTATATAAACAAAAATGGTTAAGTTTAAATA---ATAATACCCGT

Size

Hit Count

Total Norm

scf7180000302421:989146-989146 +

0.78

Size

Hit Count

Total Norm

None

droTak1 - 3 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000415169:850584-850710 -

72.39

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAG-CAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGT-ATTT---AT
ATTT----GGAACTTCGA-----ATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTGTTGAAGAGTCAAATATAACTTTTTTGGAAGCTAAGAGGATTTGTCCTAAGCAGCTTGGTTATTTCGAAT

Size

Hit Count

Total Norm

scf7180000415863:318208-318285 +

28.45

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAG----CTTGGTATTTAT
GT--------------------------------------------------AGCAGTTCTACGATTCTGAAAAAGAGAAAAAGTTCGGTTAGAAATAAAATAAATTA-------TAAGATTTGTACAAGAATAT

Size

Hit Count

Total Norm

scf7180000410971:5045-5103 +

24.39

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGG---ATTTGCCCAAATCAGCTTGGTATTTAT
--------------------------------------------------------------------------GCAAATTTTAAATTATTTGAAATGGGGCGAGCATTTTGTCTCATTTTGCTC-GTATACGT

Size

Hit Count

Total Norm

droEle1 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000490751:1108267-1108393 +

49.22

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTG---GTATTTAT
AAATCATCATACCTTCA-ATGTTTTTAGACATATAC-----GCAAGTC-AATCATAATTTTAATGTTTTCAAGAATATTAAATTTTTTTGCAGTAGCTGCAAGAGTATATGAACTTCGGTTTGCCGATGTTTGC

Size

Hit Count

Total Norm

scf7180000490751:1106991-1107176 +

36.5

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCC---AAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTG-CCCAAATCA---GCTTGGTATTTA----------------------------------------------------T
AAATACGGG----CTGACTCGGAAAAGGTCATTTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTTGTTCTGAAAAGTCAAATATAACTTTTTTGAAAGCTACGAGGATTTGTCCCAAATCACGTGCATTGTTTTTGAGCGAAAGACCAGGACGGATGGAAAATCAGGAGCAAAACCGTGAGAAACAAGT

Size

Hit Count

Total Norm

droRho1 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000761121:198567-198704 -

56.09

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCC--AAGAG-CAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCC-----------AAATCAGCTTGGTATTTAT
AACG-------AGCTTTCTCGAAATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTGTTCTGAAAAGTCAAATATAACTTTTTTGAAAGCTACGAGGATTTGTTCCATTAACAATAAAAGCAGTGAAAGCCATAG

Size

Hit Count

Total Norm

scf7180000776567:6045-6218 +

30.82

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATG--TCCTCCAAGCGAGCAAAGAAGTAGTATTTG-----------------------------------------TGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAAT-------CAGCTTGGTATTTAT
AAGCCCAAGTGGCCGTAATTTGAACCGATCGGTATGCCTCGGTCCGTTCACAGAAATTGCAAATGTCAGCATACTGTCTCATGCGCGGACCTCGCAACCGAACTTATGT----ATGTGCATATACCCTCGCGCTCAAGCTTAAGAGAGCATAGCCATATACATAGCCAACT---TGTGGAT

Size

Hit Count

Total Norm

droKik1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302517:1176347-1176493 +

53.24

AGGTCCAGGTAAGCTCAATTGTC--ACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGA-----GCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAA-TC--------AGCTTGGTATTT---AT
ATAGCCGGGACATCTCC---GCCAAGCTGGTCTTTTCCTCTAAGCGAGCAAAGAAGTGGTATTTGTTGCACTTGAAATTATTCAAATATAACTTTTTTGGAAGCTAGAAGGAGTTGCCCACAAGCACACTTTAATCCCAATATTTCTCAG

Size

Hit Count

Total Norm

droAna3 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13417:2478487-2478598 -

61.91

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG---TTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT GGTTGCA---ATCCTGGCTTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTGCTTTTAATGGTCAAATATAACTTTTTTGGAAGCTACGAGGAGTTGTCC-------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.......................................AAGCGAGCAAAGAAGTAGTATT.........................................................................	22	1	350.00	294.00	37.00	19.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTATTT........................................................................	23	1	113.00	91.00	17.00	5.00	0.00
..................................................................................TATAACTTTTTTGGAAGCTACG..............................	22	1	79.00	74.00	0.00	5.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTAT..........................................................................	21	1	54.00	51.00	1.00	2.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTATTTT.......................................................................	24	1	11.00	7.00	4.00	0.00	0.00
........................................AGCGAGCAAAGAAGTAGTATTT........................................................................	22	1	9.00	5.00	4.00	0.00	0.00
..................................................................................TATAACTTTTTTGGAAGCTACGT.............................	23	1	8.00	7.00	0.00	1.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTAAT.........................................................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................AGCGAGCAAAGAAGTAGTATT.........................................................................	21	1	4.00	4.00	0.00	0.00	0.00
.......................................AATCGAGCAAAGAAGTAGTATT.........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTAGTT........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTA...........................................................................	20	1	3.00	2.00	0.00	1.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTAGT.........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTGGTATT.........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.......................................AAGCGAGCAAAGAAGCAGTATT.........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TATAACTTTTTTGGAAGCTAC...............................	21	1	2.00	2.00	0.00	0.00	0.00
.................................................................................ATATAACTTTTTTGGAAGCTAC...............................	22	1	2.00	2.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTATTTTT......................................................................	25	1	2.00	1.00	1.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTACT.........................................................................	22	1	2.00	2.00	0.00	0.00	0.00
.......................................AAGCGATCAAAGAAGTAGTATT.........................................................................	22	1	2.00	2.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGGAGTATT.........................................................................	22	1	2.00	1.00	0.00	1.00	0.00
..................................................................................TATAACTTTTTTTGAAGCTACG..............................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCxAAGAAGTAGTATTTT.......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTAG..........................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................................TATAACTTTTTTAGAAGCTACG..............................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................TATAACTTTTTTGGAAGCTATG..............................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AATCGAGCAAAGAAGTAGTATTT........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.......................................AAGAGAGAAAAGAAGTAGTATTT........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AATCGATCAAAGAAGTAGTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................TATAACTTTTTTGGAAGCTACGA.............................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAATGAAGTTGTATT.........................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................................GGTCGAAGATAACTTTTTT........................................	19	1	1.00	0.00	1.00	0.00	0.00
.......................................AAGCGAGCAAAAAAGTAGTATTT........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGGGCAAAGAAGTAGTATT.........................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.......................................AAGCGATCAAAGAAGTAGTTT..........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGTAAAGAAGTAGTAT..........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................TGGTCGAAGATAACTTTTT.........................................	19	1	1.00	0.00	1.00	0.00	0.00
.......................................GAGCGAGCAAAGAAGTAGTAT..........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGAAGTATTT........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTATTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGAAAAGAGGTAGTATT.........................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.......................................AAGCGAGCAAACAAGTAGTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGAAGTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAACGAAGTAGTATTT........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGCAGTAGTATTT........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCTAGCAAAGAAGTAGTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGATCAAAGAAGTAGTAT..........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAATGAAGTAGTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................TATAACTTTTTTGGAAGCTA................................	20	1	1.00	1.00	0.00	0.00	0.00
........................................AGCGAGCAAAGAAGTAGTGTTT........................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................................................TATAACTTTTATGGAATCTACG..............................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGAGAGCAAAGAAGTAGTATTT........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
................................................................................AATATAACTTTTTTGGAATCT.................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAATGAAGTAGTAA..........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.........................................GCGAGCAAAGACGTAGTATTT........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................AGGCGAGCAAAGAAGTAGTATTTT.......................................................................	24	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGATGTAGTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCTAGCAAAGAAGTAGTATTT........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCGAAGAAGTAGTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................AGCGAGCAAAGCAGTAGTATTT........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGACGTATTATTT........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTATTTC.......................................................................	24	1	1.00	0.00	1.00	0.00	0.00
.................................................................................ATATAACTTTTTTGGAAGCTA................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................TATAACTTTTTTGCAAGCTACG..............................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTACTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGCAGTAGTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTGTT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................ACGCGAGCAAAGAAGTAGTATTT........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.......................................AATCGAGCAAAGAAGTAGTAT..........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGCAGTAGTAGT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGTAGTAGTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AGGCTAGCAAAGAAGTAGTATTT........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGAAGTAT..........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.........................................................TAGTTGTTTGCTTTTCATG..........................................................	19	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCGAACAAAGAAGTAGTATT.........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTACTTT.......................................................................	24	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGxAGTAGTATT.........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
......................................CAAGCGAGCAAAGAAGTAGTATT.........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTATTC........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................AAGCGAGCAAAGAAGTAGTT...........................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..................................................................................TATAACTTTCTTGGAAGCTACG..............................	22	1	1.00	0.00	0.00	1.00	0.00
.........................................GCGAGCAAAGAAGTAGTATTG........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................AGGCGAGCAAAGAAGTAGTATTTTT......................................................................	25	1	1.00	1.00	0.00	0.00	0.00

droBip1 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000395874:49590-49667 -

32.56

AGGTCCAGGTAAGCTCAATTGTCACC------------------GGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
ATCCCGAACCAATCGCGGTTGCAATCCTTGGGTGGATTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGGCGTAT-----------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000395874:47316-47380 -

28.6

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAG--CAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
-----------------------------------------------------------TTTTTATTTCAAAGAACTTAAATAAAAGTTGCTTGAGAG-----TGGGTAT----AAATATTTGTTGTTTTTTC

Size

Hit Count

Total Norm

dp4 - 0 hit found

droPer1 - 0 hit found

droWil1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_181096:7946609-7946719 +

55.92

AGGTCCAGGTAAGCTCAATTGT-CACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCA-AATCAGCTTGGTATTTAT A------------TTCATTTTTCCAATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTCTTTGGAAATTCAAATATAACTTTTTTGGAAGCTACAAGGCAATGTCCACAATCAAC-----------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................AAGCGAGCAAGAAAGTGGTATT.......................................................................	22	1	661.00	649.00	7.00	4.00	1.00
........................................AAGCGAGCAAGAAAGTGGTATTT......................................................................	23	1	149.00	144.00	3.00	2.00	0.00
........................................AAGCGAGCAAGAAAGTGGTAT........................................................................	21	1	51.00	50.00	0.00	1.00	0.00
........................................AAGCGAGCAAGAAAGTGGTATTTC.....................................................................	24	1	5.00	5.00	0.00	0.00	0.00
................................................................................TATAACTTTTTTGGAAGCTACA...............................	22	1	5.00	4.00	1.00	0.00	0.00
........................................AAGCGAGCAAGAAAGAGGTATT.......................................................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTA.........................................................................	20	1	5.00	5.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGAATT.......................................................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGGGGTATT.......................................................................	22	1	3.00	3.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGGATT.......................................................................	22	1	3.00	3.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTxGTATT.......................................................................	21	1	3.00	3.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGCGGTATT.......................................................................	22	1	2.00	2.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGCGGTATTT......................................................................	23	1	2.00	2.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTATTA......................................................................	23	1	2.00	2.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTACT.......................................................................	22	1	2.00	2.00	0.00	0.00	0.00
.........................................AGCGAGCAAGAAAGTGGTATTT......................................................................	22	1	2.00	2.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTATTTCC....................................................................	25	1	2.00	2.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTGTT.......................................................................	22	1	2.00	2.00	0.00	0.00	0.00
........................................AACCGAGCAAGAAAGTGGTATT.......................................................................	22	1	2.00	1.00	1.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTATC.......................................................................	22	1	2.00	2.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGCATT.......................................................................	22	1	2.00	2.00	0.00	0.00	0.00
........................................AAACGAGCAAGAAAGTGGTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................................TATAGCTTTTTTGGAAGCTA.................................	20	1	1.00	0.00	0.00	1.00	0.00
.........................................AGCGAGCAAGAAAGTGGTATTTA.....................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTCGTATTT......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTATTAA.....................................................................	24	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGCAGTATTT......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAATGTGGTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGACCAAGAAAGTGGTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................AAGTGAGCAAGAAAGTGGTATTT......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTATTTT.....................................................................	24	1	1.00	0.00	1.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTATCT......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGTTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................GAAAAAAGTGGTATTTGT....................................................................	18	1	1.00	0.00	1.00	0.00	0.00
........................................AAGCGAGCAAGACAGTGGTATTT......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................AAGTGAGCAAGAAAGTGGTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAxxAAAGTGGTATT.......................................................................	20	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGATCAAGAAAGTGGTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAGAGTGGTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTCTT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................AAGAGAGCAAGAAAGTGGTATTT......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTCGTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
......................................................GTGGTATTTGGCTGTGGA.............................................................	18	1	1.00	0.00	1.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGATATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAATAAAGTGGTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAATTGGTATTT......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGxAAGTGGTATT.......................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................CAAGCGAGCAAGAAAGTGGTATT.......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................GAGCGAGCAAGAAAGTGGTATT.......................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.........................................................................ATTCAAATAAAACTGTTT..........................................	18	3	0.33	0.00	0.00	0.00	0.33
........................................AAGCGAGCAAGTAAGTGGTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCGAGAAAGTGGTATTT......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................AAGCGAGCAAGAAAGTGGTATTC......................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..............................................................TGACTTTGGAAATTCAAA.....................................................	18	2	0.50	0.00	0.50	0.00	0.00
........................................AAGCGAGCAAGCAAGTGGTATT.......................................................................	22	1	1.00	1.00	0.00	0.00	0.00
......................................................................................TTTTTTGGAAGCTAGGAG.............................	18	1	1.00	0.00	1.00	0.00	0.00

droVir3 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13042:917533-917679 -

51.94

AG--GTCCAGGTAAGCT--CAATTG-TCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGT--GTTTCCAAGAGCAAATATAACTTCATTGGAA-GCTAAGTGGATTTGCCCAAA--T-----CAGCTTGGTATTTAT ATCCGAATATGAGATTTACCAATTATTAACTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTATTTGCGTGAATCTGATATCAAATAAGACTTTTTTGGTTCGCTATGAGGTATTGTTCATAAATAAACACGTCTGCCTATATAC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................GAGCGAGCAGAGAAGTATTAT.................................................................................	21	1	347.00	340.00	0.00	1.00	6.00	0.00
............................................GAGCGAGCAGAGAAGTATTATC................................................................................	22	1	164.00	162.00	0.00	0.00	2.00	0.00
............................................GAGCGAGCAGAGAAGTATTA..................................................................................	20	1	77.00	76.00	0.00	0.00	1.00	0.00
............................................GAGCGAGCAGAGAAGTATTC..................................................................................	20	1	64.00	63.00	0.00	0.00	1.00	0.00
............................................GAGCGAGCAGAGAAGTATTATCC...............................................................................	23	1	42.00	41.00	0.00	0.00	1.00	0.00
............................................GAGCGAGCAGAGAAGTATT...................................................................................	19	1	37.00	36.00	1.00	0.00	0.00	0.00
.....................................................................................ATAAGACTTTTTTGGTTCGCTATG.....................................	24	1	28.00	13.00	0.00	0.00	15.00	0.00
......................................................................................TAAGACTTTTTTGGTTCGCTATG.....................................	23	1	25.00	20.00	0.00	0.00	5.00	0.00
............................................GAGCGAGCAGAGAAGTATTATTT...............................................................................	23	1	24.00	23.00	0.00	0.00	0.00	1.00
............................................GAGCGAGCAGAGAAGTATTATT................................................................................	22	1	19.00	18.00	1.00	0.00	0.00	0.00
......................................................................................TAAGACTTTTTTGGTTCGCTAT......................................	22	1	18.00	18.00	0.00	0.00	0.00	0.00
.....................................................................................ATAAGACTTTTTTGGTTCGCT........................................	21	1	16.00	9.00	0.00	0.00	7.00	0.00
............................................GAGCGAGCAGAGAAGTATTATTC...............................................................................	23	1	15.00	14.00	0.00	0.00	1.00	0.00
.....................................................................................ATAAGACTTTTTTGGTTCGCTC.......................................	22	1	11.00	3.00	0.00	0.00	8.00	0.00
.....................................................................................ATAAGACTTTTTTGGTTCGCTAT......................................	23	1	10.00	10.00	0.00	0.00	0.00	0.00
.....................................................................................ATAAGACTTTTTTGGxTCGTTA.......................................	21	1	9.00	5.00	0.00	0.00	4.00	0.00
.....................................................................................ATAAGACTTTTTTGGTTCGCTA.......................................	22	1	7.00	7.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTATTCC.................................................................................	21	1	6.00	6.00	0.00	0.00	0.00	0.00
......................................................................................TAAGACTTTTTTGGTTCGCTA.......................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTATTATTTC..............................................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTATTCA.................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
......................................................................................TAAGACTTTTTTGGTTCGCT........................................	20	1	2.00	1.00	0.00	0.00	1.00	0.00
.....................................................................................ATAAGACTTTTTTGGTTCGCC........................................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
............................................GAGCGAGCAAAGAAGTATTATC................................................................................	22	1	2.00	2.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGCATTC..................................................................................	20	1	2.00	2.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTATTAA.................................................................................	21	1	2.00	2.00	0.00	0.00	0.00	0.00
......................................................................................TAAGACTTTTTTGGTTCGCTATC.....................................	23	1	2.00	1.00	0.00	0.00	1.00	0.00
............................................GAGCGAGCAGAGAAGTATTT..................................................................................	20	1	2.00	2.00	0.00	0.00	0.00	0.00
......................................................................................TAAGACTTTTTTGGTTCGCC........................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................GAGCGAGCAGAGAAGTATTCT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................ATAAGACTTTTTTGGTTCGCTT.......................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGACAAGTATTA..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTATTATA................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................ATAAGACTTTATTGGTTCGCTA.......................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.............................................AGCGAGCAGAGAAGTATTAT.................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAATATT...................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGTGAGCAGAGAAGTATTATC................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGGATTC..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................ATAAGACTTTTTTGGTTCACT........................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................................................TAAGACTTTTTTGGTTCGCTATGT....................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTATTGTT................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................ATAAGACTTTTTTGGTTCGCTGT......................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................GAGCAGAGAAGTATTATC................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................TAAGACTTTTTTGGTTCGCTATT.....................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTATCAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCAAGCAGAGAAGTATTATC................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAACAGAGAAGTATTA..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................TAAGACTTTTTTGGCTCGCTATGT....................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCAAGCAGAGAAGTATTA..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGGGCAGAGAAGTATTA..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTACTAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................TAAGACTTCTTTGGTTCGCTATG.....................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTATTGT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTACTA..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGAATTAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAxAAGTATTATTC...............................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGCGAAGTATTA..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GTGCGAGCAGAGAAGTATTC..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTAATC..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................CGAGCGAGCAGAGAAGTATTATC................................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGATCAGAGAAGTATT...................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCGGAGAAGTATTAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCCAGCAGAGAAGTATTAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGAAGAGAAGTATTC..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................TAGCGAGCAGAGAAGTATTC..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTATAAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTACTATC................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAACTATTAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................TAAGACTTTTTTGGxTCGTTA.......................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................TGCGTGAATCTGATATCAAA............................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................TAAGACTTTTTTGGTTCGCTATGTC...................................	25	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGGGAAGTATTAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGGAGTATTAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGAAGTATC...................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCGGAGAAGTATTATT................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................ATAAGACTTTTTTGGATCGCT........................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................................................................CTTTTTTGGTTCGCTATG.....................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GATCGAGCAGAGAAGTATTAA.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................ATAAGACTTTTTTGGTTCGCTATC.....................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGCAGTATTAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GAGCGAGCAGAGATGTATTATC................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00

droMoj3 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_6328:2908489-2908614 -

60.47

AGGTCCAGGTAAGCTCAAT-TGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATT-TGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAAT-------CAGCTTGGTATTTAT --------------TCAATCAGACGCTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTTTTGCGTGCATCTGATATCAAATAAAACTTTTTTGGTTGCTGCGAGGTATTGTTGAAATGTAAACGTTGCTCGCTCTCTAC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................GAGCGAGCAGAGAAGTATTAT...............................................................................	21	1	128.00	125.00	3.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATTA................................................................................	20	1	112.00	109.00	2.00	1.00	0.00
........................................GAGCGAGCAGAGAAGTATT.................................................................................	19	1	36.00	35.00	1.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATTT................................................................................	20	1	13.00	13.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATTAA...............................................................................	21	1	12.00	11.00	0.00	1.00	0.00
........................................GAGCGAGCAGAGAAGTATTATC..............................................................................	22	1	10.00	10.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATTATT..............................................................................	22	1	8.00	8.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATTC................................................................................	20	1	7.00	7.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATTATTT.............................................................................	23	1	5.00	5.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATTTT...............................................................................	21	1	2.00	2.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATTATTC.............................................................................	23	1	2.00	2.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGTAGTATTAT...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATTTC...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGAATTATTAT...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATTCT...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................GAACGAGCAGAGAAGTATTAT...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................GAGCGAGCAGAGAAGTATC.................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
........................................GAGCTAGCAGAGAAGTATTAT...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................GACCGAGCAGAGAAGTATTATT..............................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................GAGCGAxCAGAGAAGTATTAT...............................................................................	20	1	1.00	1.00	0.00	0.00	0.00
........................................GAGCGATCAGAGAAGTATTAT...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................GATCGAGCAGAGAAGTATT.................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
........................................GAGCGAGCAGATAAGTATT.................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_6500:13487212-13487338 +

48.87

AGGTCCAGGTAAGCTCAATTGTCACCGGTCAT-GTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTC-----ATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT ATATT-----ATACCATATTATATTTTGATATAACCCCTCTTAAGAGTTAAGAAATATTATTAGTTAATATAAAATTAAAATTAATTTCCTAATTTTGGCTACTGGGAGTTTCAGCTTAAATA-----TTTATATAT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...............................................................................................TTGGCxACTGGGAGTTTT........................	17	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................CTTGGCxACTGGGAGTTT.........................	17	1	1.00	0.00	1.00	0.00	0.00

scaffold_6473:15305312-15305478 +

34.08

AGGTCCAGGTAAGCTCA-ATTGTCACCGGTCA---------------------------TGTCCTCCAAGCGAGCA--AAGAAGTAGTATTTGTGTTTCCAA----------GAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT TAGT---GGTAAAGTGACATTGCCATTAGTGGTCCCGCCACCAGAGCCATTGCGTTCCCTACTTTTCTAGCGAGCACTCAAAAATACAATGCCTGTTTCCAATTCGGGGCAGAGACAAATCCAACAA-ATCAAAAACCATGAAAATTGGTGCAGCAGATCTCGAATTATAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................TCGCCACCAGAGCCATTGCGTC...................................................................................................................	22	2	19.50	19.50	0.00	0.00	0.00
..................................TCGCCACCAGAGCCATTGCGT....................................................................................................................	21	2	18.00	17.00	0.50	0.50	0.00
.............GTGACATTGCCATTAGTGGTC.........................................................................................................................................	21	1	24.00	24.00	0.00	0.00	0.00
.........TAAAGTGACATTGCCATTAGTGGTC.........................................................................................................................................	25	1	9.00	0.00	0.00	0.00	9.00
.......................................ACCAGAGCCATTGCGTTCCCT...............................................................................................................	21	2	3.00	3.00	0.00	0.00	0.00
..................................CCGCCACCAGAGCCATTGCGT....................................................................................................................	21	2	2.50	2.50	0.00	0.00	0.00
............AGTGACATTGCCATTAGTGGT..........................................................................................................................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................CCAGAGCCATTGCGTTCCCTG..............................................................................................................	21	2	2.00	2.00	0.00	0.00	0.00
..................................CCGCCACCAGAGCCATTGCGTC...................................................................................................................	22	2	2.00	1.50	0.50	0.00	0.00
......................................CACCAGAGCCATTGCGTTCCC................................................................................................................	21	2	2.00	2.00	0.00	0.00	0.00
.........................TTAGTGGTCTCGCCACCAGAG.............................................................................................................................	21	2	1.50	1.50	0.00	0.00	0.00
.....................................CCACCAGAGCCATTGCGTTCC.................................................................................................................	21	2	1.50	1.50	0.00	0.00	0.00
.........................................CAGAGCCATTGCGTTCCCTGC.............................................................................................................	21	2	1.50	1.00	0.00	0.50	0.00
.........TAAAGTGACATTGCCATTAGTGGTCC........................................................................................................................................	26	1	2.00	0.00	0.00	0.00	2.00
..................................................................CTAGCGAGCACTCAAAAATACAATGCC..............................................................................	27	2	1.00	0.50	0.00	0.00	0.50
.........TAAAGTGACATTGCCATTAGTGGTCCC.......................................................................................................................................	27	1	2.00	0.00	0.00	0.00	2.00
TAGT---GGTAAAGTGACATTGCC...................................................................................................................................................	21	1	2.00	2.00	0.00	0.00	0.00
............................GTGGTCTCGCCACCAGAGCCA..........................................................................................................................	21	2	1.00	1.00	0.00	0.00	0.00
.................CATTGCCATTAGTGGTCTCGC.....................................................................................................................................	21	2	1.00	0.50	0.50	0.00	0.00
.............GTGACATTGCCATTAGTGGTT.........................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
TAGT---GGTAAAGTGACATTGTC...................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.................CATTGCCATTAGTGGTCCCGCC....................................................................................................................................	22	2	0.50	0.50	0.00	0.00	0.00
.........TGAAGCGACATTGCCATTAGTGG...........................................................................................................................................	23	2	0.50	0.50	0.00	0.00	0.00
............................................................CATTTTCTAGCGAGCACTCAA..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................ACCAGAGCCATTGCGTTCCCTC..............................................................................................................	22	2	0.50	0.50	0.00	0.00	0.00
.........................................................CCTACTTTTCTAGCGAGCACT.............................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
..................................................................CTAGCGAACACTCAAAAATA.....................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
.AGT---GGTAAAGTGACATTGCC...................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
........................................CCAGAGCCATTGCGTTCCCT...............................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
................................................................TTCTAGCGAGCACTCAAAAATACA...................................................................................	24	2	0.50	0.00	0.00	0.00	0.50
..............TGACATTGCCATTAGTGGTCCC.......................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.........................................................................................................................CAACAA-ATCAAAAGCCATGAAAATTGG......................	27	6	0.17	0.17	0.00	0.00	0.00
................................................................TTCTAGCGAACACTCAAAAATACAATGC...............................................................................	28	2	0.50	0.50	0.00	0.00	0.00
..................................................................................................................ACAAATCCAACAA-ATCAAAGACC.................................	23	4	0.25	0.25	0.00	0.00	0.00
................................TCTCGCCACCAGAGCCATTGCG.....................................................................................................................	22	2	0.50	0.50	0.00	0.00	0.00
...............AACATTGCCATTAGTGGTCCC.......................................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
................................................................................AAAATACAGTGCCTGTTTCCAATTCG.................................................................	26	2	0.50	0.00	0.00	0.00	0.50
TAGT---GGTAAAGTGGCATTGCC...................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.........TAAAGTGACATTGCCATTAGTGGT..........................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................................................CAACAA-ATCAAAAACCATGAAAATTGG......................	27	5	0.20	0.00	0.00	0.00	0.20
.................................................................TCTAGCGAACACTCAAAAATA.....................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
..................................TCGCCACCAGAGCAATTGCGT....................................................................................................................	21	2	0.50	0.00	0.00	0.50	0.00
..........................................AGAGCCATTGAGTTCCCTGCT............................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
.....................................CCAACAGAGCCATTGCGTTCC.................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
..........................................AGAGCCATTGCGTTCCCTGC.............................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
.........................................................CCTACTTTTCTAGCGAGCTCT.............................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
..................................TCGCCACCAGAGCCATTGC......................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
................................TCCCGCCACCAGAGCCATTGCG.....................................................................................................................	22	2	0.50	0.00	0.50	0.00	0.00
........GTAAAGTGACATTGCCATTAGTGGTC.........................................................................................................................................	26	1	1.00	1.00	0.00	0.00	0.00
.........TAAAGTGACATAGCCATTAGTGGTC.........................................................................................................................................	25	1	1.00	0.00	0.00	0.00	1.00
................................................TTTGCGTTCCCTACTTTTCTAG.....................................................................................................	22	2	0.50	0.00	0.50	0.00	0.00
................ACATTGCCATTAGTGGTCTCG......................................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
.......................................................................................................................................................CAGCAGATCTCGAATTATAA	21	5	0.20	0.20	0.00	0.00	0.00
.......................................ACCAGAGCCATTGAGTTCCCT...............................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
..........................TAGAGGTCCCGCCACCAGAGCCACTG.......................................................................................................................	26	2	0.50	0.00	0.00	0.00	0.50
.................................................................................................TCCAATCCGGGGCAGAGAAAAATC..................................................	24	2	0.50	0.50	0.00	0.00	0.00
...........................AGTGGTCTCGCCACCAGAGCC...........................................................................................................................	21	2	0.50	0.00	0.00	0.00	0.50
.........TAAAGCGACATAGCCATTAGTGGTC.........................................................................................................................................	25	2	0.50	0.00	0.00	0.00	0.50
..................ATTGCCATTAGTGGTCCCGCC....................................................................................................................................	21	2	0.50	0.00	0.00	0.00	0.50
.........TAAAGTGACATTGCCATTAGT.............................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................TTCTAGCGAGCACTCAAAAATACAATGCC..............................................................................	29	2	0.50	0.50	0.00	0.00	0.00
..............................................................TTTTCTAGCGAACACTCAAAAATACAATGC...............................................................................	30	2	0.50	0.50	0.00	0.00	0.00
.........TAAAGTGACGTTGCCATTAGTGGTC.........................................................................................................................................	25	1	1.00	1.00	0.00	0.00	0.00
..........AAAGTGACATTGCCATTAGTG............................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.........................TTAGTGGTCCCGCCACCAGAGC............................................................................................................................	22	2	0.50	0.50	0.00	0.00	0.00
.................................................................................................TCCAATTCGGGGCAGAGACAAATC..................................................	24	2	0.50	0.50	0.00	0.00	0.00
..............................................................................................TTTTCCAATTCGGGGCAGAGAC.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.......................CATTAGTGGTCCCGCCACCAGAGCCA..........................................................................................................................	26	2	0.50	0.50	0.00	0.00	0.00
...........................AGTGGTCCCGCCACCAGAGCCA..........................................................................................................................	22	2	0.50	0.50	0.00	0.00	0.00
..........................TAGTGGTCTCGCCACCAGAGC............................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00

scaffold_6473:13704797-13704825 -

13.95

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCC--AAATCAGCTTGGTATTTAT
A--------------------------------------------------------------------------------------------------------TCTGCCCTTAATTCAACTTAATCGCAAT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6500:3566101-3566107 +

4.65

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

None

droGri2 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_15081:2051206-2051247 -

24.03

AGGTCCAGGTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTTTCCAAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAAATCAGCTTGGTATTTAT
----------------------CAAAGGACATCTTCTGTAAGCGAGCAAAAATATAATATTTGT-------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

Generated: 04/20/2012 at 05:21:33 EDT