dme-mir-969- Best orthologs

dme-mir-969	chrX:18018390-18018483 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 18018408-18018428
   star strand at position 18018449-18018469
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chrX:18018375-18018498 +		1	TTCG-----------GT--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CTGCAAT--TCGA----------------AAT
droSim1	chrU:15519348-15519471 +	LASTZ	1	TTCG-----------GG--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CTGCAAT--TCAA----------------AAT
droSec1	super_8:326574-326685 +	LASTZ	1	TTCG-----------AG--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CT------------------------------
droYak2	chrX:16642309-16642432 +	LASTZ	1	TTCG-----------GG--------GTATCCC-C---AAA---------------CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGAT-GGTCTA----CCGCAAT--TCGA----------------AAG
droEre2	scaffold_4690:8346009-8346128 +	LASTZ	1	TTTG-----------GG--------AAGTTCC-C---AAA---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGATTA----CTGC------CGA----------------AAG
droEug1	scf7180000408176:664516-664647 -	LASTZ	4	TTCT-----------GGG-------GAATCCC-CCTGAAA---------T----CTCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTT----CATCAGC--TTGA----------------AAG
droBia1	scf7180000301760:584976-585092 -	LASTZ	4	ATCT-----------CT--------GC-TCCG-C---AA----------------TAGCTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCTT-GGCCC--------CACT--TCA-----------------AAA
droTak1	scf7180000415843:458223-458340 -	LASTZ	4	TACA-----------GC----------AT--C-G---AAT---------------ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGAAT-GGCGCC----CA--ACT--TCAA----------------AGA
droEle1	scf7180000491193:225601-225743 +	LASTZ	4	C--G-----------GG--------TAATCTC-CCAAAAA---------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACAA----CTTCAGT--TTAACAGAGTCCTACAAATAAAC
droRho1	scf7180000779986:498587-498706 -	LASTZ	4	G-------------------------AATCCCCG---AAA---------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGAC-GGGCTA----CTTCAAT--TCAA----------------AAG
droFic1	scf7180000453872:337515-337642 -	LASTZ	4	GTCC-----------CC--------GAATTCC-C---GGT---------------TCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACAA----CTCCAGCTTTCGC----------------AAG
droKik1	scf7180000302696:1720093-1720210 +	LASTZ	4	ATAA-----------GT--------GAAA-GT-G---AAG---------------ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAGACAA----AAGCAA-----------------------CAA
droAna3	scaffold_13335:1607974-1608101 -	LASTZ	1	TGTGTTTATTTTTTTTG--------GAA---------AAT---------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-AGATAA----TGTCAGC----AG----------------TAT
droBip1	scf7180000395454:59919-60050 +	LASTZ	4	TCTTGTAATTTTTTTTG--------GA------A---AAT---------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-AGATAC----GATCAACATTAAA----------------AAA
dp4	chrXL_group3a:1977519-1977620 -	LASTZ	1	TTCC-----------TG--------GAAGCC-----------------ATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG----------------------------------------------
droPer1	super_11:2701270-2701398 +	LASTZ	1	TTCC-----------TG--------GAAGCC-----------------ATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGT--ATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTGC-AGCCAAATCATCGCAGC--GCAT----------------CCA
droWil1	scaffold_181096:12029390-12029503 +	LASTZ	1	TTTA-----------------------------------T---------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGAC-AGAACGAA--CAACAAA--TGAA----------------GAA
droVir3	scaffold_12928:1264092-1264205 -	LASTZ	1	TTCA-----------AG--------AGCAGCT-C---GCG---------------CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-GGCATT--------------C------------------AAG
droMoj3	scaffold_6473:13724290-13724417 +	LASTZ	1	TCCT-----------TATCCATACCATATCCA-C---ATT---------------TGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAGT----GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGGC---ACAA----GTTCAACAA--AA----------------GCA
droGri2	scaffold_15203:8445730-8445869 +	LASTZ	1	TTCGGTTTGTTCTTTT----------------------ACAGCAGTGCATCCGGGTGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGCGT--ATT-TGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTT-GCGGAA----A-TCAACTTACTC----------------AAA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	TTCG-----------GT--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CTGCAAT--TCGA----------------AAT
droSim1	TTCG-----------GG--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CTGCAAT--TCAA----------------AAT
droSec1	TTCG-----------AG--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CT------------------------------
droYak2	TTCG-----------GG--------GTATCCC-C---AAA---------------CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGAT-GGTCTA----CCGCAAT--TCGA----------------AAG
droEre2	TTTG-----------GG--------AAGTTCC-C---AAA---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGATTA----CTGC------CGA----------------AAG
droEug1	TTCT-----------GGG-------GAATCCC-CCTGAAA---------T----CTCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTT----CATCAGC--TTGA----------------AAG
droBia1	ATCT-----------CT--------GC-TCCG-C---AA----------------TAGCTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCTT-GGCCC--------CACT--TCA-----------------AAA
droTak1	TACA-----------GC----------AT--C-G---AAT---------------ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGAAT-GGCGCC----CA--ACT--TCAA----------------AGA
droEle1	C--G-----------GG--------TAATCTC-CCAAAAA---------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACAA----CTTCAGT--TTAACAGAGTCCTACAAATAAAC
droRho1	G-------------------------AATCCCCG---AAA---------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGAC-GGGCTA----CTTCAAT--TCAA----------------AAG
droFic1	GTCC-----------CC--------GAATTCC-C---GGT---------------TCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACAA----CTCCAGCTTTCGC----------------AAG
droKik1	ATAA-----------GT--------GAAA-GT-G---AAG---------------ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAGACAA----AAGCAA-----------------------CAA
droAna3	TGTGTTTATTTTTTTTG--------GAA---------AAT---------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-AGATAA----TGTCAGC----AG----------------TAT
droBip1	TCTTGTAATTTTTTTTG--------GA------A---AAT---------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-AGATAC----GATCAACATTAAA----------------AAA
dp4	TTCC-----------TG--------GAAGCC-----------------ATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG----------------------------------------------
droPer1	TTCC-----------TG--------GAAGCC-----------------ATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGT--ATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTGC-AGCCAAATCATCGCAGC--GCAT----------------CCA
droWil1	TTTA-----------------------------------T---------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGAC-AGAACGAA--CAACAAA--TGAA----------------GAA
droVir3	TTCA-----------AG--------AGCAGCT-C---GCG---------------CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-GGCATT--------------C------------------AAG
droMoj3	TCCT-----------TATCCATACCATATCCA-C---ATT---------------TGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAGT----GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGGC---ACAA----GTTCAACAA--AA----------------GCA
droGri2	TTCGGTTTGTTCTTTT----------------------ACAGCAGTGCATCCGGGTGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGCGT--ATT-TGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTT-GCGGAA----A-TCAACTTACTC----------------AAA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

TTCG-----------GG--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CTGCAAT--TCAA----------------AAT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	863.00	4.00	598.00	11.00	250.00
...........................................................................................TGAGATC--ATTTTAAAAGC............................................................................	18	2	71.50	0.00	51.50	9.00	11.00
..................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	104.00	0.00	54.00	2.00	48.00
..................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	55.00	0.00	39.00	3.00	13.00
...........................................................................................TGAGATC--ATTTTGAAAAC............................................................................	18	2	20.50	0.00	15.00	1.50	4.00
..................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	36.00	0.00	26.00	1.00	9.00
...........................................................................................TGAGATC--GTTTTGAAAGC............................................................................	18	2	10.00	0.00	4.50	3.00	2.50
.................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	4.00	0.00	3.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGATCTCG.....................................................	20	1	3.00	0.00	3.00	0.00	0.00
.......................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	3.00	1.00	2.00	0.00	0.00
..........................................................................................TTGAGATC--GTTTTAAAAACAAAAACT.....................................................................	26	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	2.00	0.00	2.00	0.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTC......................................................	21	1	2.00	0.00	2.00	0.00	0.00
..................................................................................................................AACTCGACACGTTGAGCTCGT....................................................	21	1	2.00	0.00	2.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	2.00	0.00	2.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	2.00	1.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGATCTCGT....................................................	21	1	2.00	0.00	2.00	0.00	0.00
.......................................................................................................................................TCGTGGGAT-GGACTA----CTGC............................	19	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TTGAGATC--GTTTTAAAAACAA..........................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTC......................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTTACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00
................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................AAAACTTCACACGTTGAGCTC......................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................CCGTGGTCCACTAAGCAAGTTT................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCAT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................AACTGACACGTTGAGCTCGT....................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGCTCGTTT..................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGGGATCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACxTGACACGTTGAGCTCGG....................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGCGCTCGT....................................................	21	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................TTTGAGATC--GTTTTAAAA..............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACTTTGAGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................CAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCGCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TACTTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGGTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGATCTCGC....................................................	21	1	1.00	0.00	1.00	0.00	0.00

droSec1

TTCG-----------AG--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CT------------------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	103.00	23.00	35.00	45.00
.......................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	85.00	2.00	0.00	83.00
.......................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	33.00	1.00	0.00	32.00
..................................................................................................................AATTTGACACGTTGAGCTCGT....................................................	21	1	3.00	0.00	3.00	0.00
........................................................................AGTTCCACTAAGCAAGTTTT...............................................................................................	20	1	2.00	0.00	0.00	2.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	2.00	0.00	2.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	2.00	0.00	1.00	1.00
............................................................................................GAGATC--GTTTTAAAAACAAA.........................................................................	20	1	2.00	0.00	2.00	0.00
.............................................................................................................................TTGAGCTCGTTCGTGGGAT-GG........................................	21	1	1.00	0.00	0.00	1.00
.......................................................................GAGTTCCACTAAGCAAGT..................................................................................................	18	1	1.00	0.00	0.00	1.00
..................................................................................................................AACTCGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	1.00	0.00	1.00	0.00
.....................................................................................................................TTGACACGTTGAGCTCGTTCGT................................................	22	1	1.00	0.00	0.00	1.00
......................................................................TGAGTTCCACTAAGCAAGTTTT...............................................................................................	22	1	1.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGCGCCCGT....................................................	21	1	1.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTTGT....................................................	21	1	1.00	0.00	0.00	1.00
.......................................................................GATTTCCACTAAGCAAGTTT................................................................................................	20	1	1.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGCTCGTA...................................................	22	1	1.00	0.00	0.00	1.00
.......................................................................GAGTTACACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGCGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00
.......................................................................GAGCTCCACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	1.00
.....................................................................................................................TTGACACGTTGAGCTCGTTCGTGT..............................................	24	1	1.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAACTCGT....................................................	21	1	1.00	0.00	0.00	1.00
......................................................................CGAGTTCCACTAAGCAAGTT.................................................................................................	20	1	1.00	0.00	0.00	1.00
......................................................................................................................GGACACGTTGAGCTCGTTCGT................................................	21	1	1.00	0.00	0.00	1.00
...........................................................................................TGAGATC--GTTTTGAAAGC............................................................................	18	2	0.50	0.00	0.50	0.00
........................................................................AGTTCCACTAAGCAAGTTT................................................................................................	19	1	1.00	0.00	0.00	1.00
.......................................................................GAGTTCCACTAGGCAAGTTT................................................................................................	20	1	1.00	0.00	0.00	1.00

droYak2

TTCG-----------GG--------GTATCCC-C---AAA---------------CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGAT-GGTCTA----CCGCAAT--TCGA----------------AAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	276.00	6.00	39.00	12.00	76.00	143.00
.......................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	58.00	0.00	15.00	0.00	42.00	1.00
...........................................................................................TGAGATC--ATTTTAAAAGC............................................................................	18	2	14.00	0.00	0.00	0.00	0.00	14.00
..................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	21.00	0.00	0.00	0.00	0.00	21.00
..................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	10.00	0.00	1.00	0.00	0.00	9.00
.......................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	9.00	0.00	1.00	0.00	8.00	0.00
...........................................................................................TGAGATC--GTTTTGAAAGC............................................................................	18	2	4.50	0.00	0.00	0.00	0.50	4.00
...........................................................................................TGAGATC--ATTTTGAAAAC............................................................................	18	2	4.00	0.00	0.00	0.00	0.00	4.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	5.00	0.00	1.00	0.00	1.00	3.00
..................................................................................................................AACTTGACACGTTGCGCTCGT....................................................	21	1	5.00	0.00	0.00	0.00	5.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	5.00	1.00	0.00	1.00	1.00	2.00
..................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	5.00	0.00	0.00	0.00	1.00	4.00
.......................................................................................................................................TTGTGGGAT-GGTCTA----CCGC............................	19	1	5.00	0.00	2.00	0.00	3.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
.................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
..................................................................................................................AACTTGACACGTTGACCTCGT....................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................................................................................TTGAGATC--GTTTTAAAAACAAAAACT.....................................................................	26	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................................AAAACTTGACACGTTGAGCTC......................................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
..................................................................................................................AACTTGACACGTTGGGCTCGT....................................................	21	1	2.00	0.00	0.00	0.00	1.00	1.00
..................................................................................................................AACTTGACACGTTGTGCTCGT....................................................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
..........................................................................................TTGAGATC--GTTTTAAAAACAAA.........................................................................	22	1	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................................GAGATCCACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................GAGTTCCACTAAGCAAGTTTTT..............................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................................................................TTGTGGGAT-GGTCTA----CCGCA...........................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................................................................TTGAGATC--GTTTTAAAAACAAAAAC......................................................................	25	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGCTCGTTT..................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................GAGCTCCAATAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTAAGCTCGTT...................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTAAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGCGCGCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................................................................CTTGACACGTTGAGCTCGTCT..................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................................GAGTTCCACTACGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACGTGACACGTTGATCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTTGG....................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................................GAGCTCCACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................................TGAGATC--ATTTTAAAATC............................................................................	18	4	0.25	0.00	0.00	0.00	0.25	0.00
..................................................................................................................AACGTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................................CGAGTTCCACCATGCAAGTTT................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAACTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTTA..................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................................................GAGATC--GTTTTAAAAACAAA.........................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGCTCTT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................................CGAGTTCCACTAAGCAAGTTTT...............................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................GAGGTCCATTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................................................TTGAGATC--GTTTTAAAAACAA..........................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................GAGTTCCACTAAGCAAGTTTTA..............................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................GAGTTCCACCATGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTCT..................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGCTGAGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTAACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTTGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................................................TTGAGATC--GTTTTAAAAACA...........................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGCCCGT....................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGCTGCGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................GAGTTCCACTAAGCAAGTTTG...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................................CAACTTGACACGTTGAGCTCGT....................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGCTGAGCTCG.....................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGATCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00

droEre2

TTTG-----------GG--------AAGTTCC-C---AAA---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGATTA----CTGC------CGA----------------AAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	206.00	0.00	9.00	0.00	197.00
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	180.00	5.00	26.00	0.00	149.00
.......................................................................................................................................TCGTGGGAT-GGATTA----CTGC------......................	19	1	47.00	1.00	3.00	0.00	43.00
.......................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	43.00	0.00	3.00	0.00	40.00
........................................................................AGTTCCACTAAGCAAGTTTT...............................................................................................	20	1	8.00	0.00	2.00	0.00	6.00
.......................................................................................................................................TCGTGGGAT-GGATTA----CTGC------C.....................	20	1	8.00	1.00	2.00	0.00	5.00
..................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	6.00	0.00	0.00	0.00	6.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	4.00	0.00	2.00	0.00	2.00
.......................................................................................................................................TCGTGGGAT-GGATTA----CTGC------CT....................	21	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................................................TCGTGGGAT-GGATTA----CTGC------CG....................	21	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................TTGAGATC--GTTTTAAAAACAAAAACT.....................................................................	26	1	3.00	0.00	0.00	0.00	3.00
..................................................................................................................AACTTGACACGTTTAGCTCGT....................................................	21	1	2.00	0.00	0.00	0.00	2.00
.......................................................................GATTTCCACTAAGCAAGTTTT...............................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	2.00	0.00	0.00	0.00	2.00
..................................................................................................................AACTTGACACGTTGAGCTCGTA...................................................	22	1	2.00	0.00	1.00	0.00	1.00
.......................................................................GAGTTCCACTAATCAAGTTTT...............................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
.......................................................................GAGTTCCACTAAGCAAGTTTTA..............................................................................................	22	1	2.00	0.00	1.00	0.00	1.00
.......................................................................GAGTTCAACTAAGCAAGTTTT...............................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
..................................................................................................................AACTTGACACGTCGAGCTCGT....................................................	21	1	2.00	0.00	0.00	0.00	2.00
.......................................................................................................................................TCGTGGGAT-GGATTA----CTG.............................	18	1	2.00	0.00	0.00	0.00	2.00
..................................................................................................................AACTTAACACGTTGAGCTCCT....................................................	21	1	1.00	0.00	0.00	0.00	1.00
................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACGCGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCTTGGGAT-GGATTA----CTGC------......................	19	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCGTGGTAT-GGATTA----CTGC------CG....................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................GCTTTCCACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGTTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................GAGTTCCAATAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTAAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCGTGGGAT-GGATTA----CTT.............................	18	1	1.00	0.00	0.00	0.00	1.00
........................................................................AGTTCCACTAAGAAAGTTTT...............................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCGTTGGAT-GGATTA----CTGC------......................	19	1	1.00	0.00	0.00	0.00	1.00
............................................................................................GAGATC--GTTTTAAAAACAAA.........................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCGTGGGAT-GGTTTA----CTGC------......................	19	1	1.00	0.00	1.00	0.00	0.00
.......................................................................GAGTTCCACTCAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................GAGTTCTACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTTACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................GAGTTCCACTAACCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCGTGGGAT-GGATTA----CTGC------CA....................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGAAACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGATCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................................TCGTGGGAT-GGATTA----CTCC------......................	19	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCGTGGGAT-GGATTA----CTA.............................	18	1	1.00	0.00	0.00	0.00	1.00
................................................................................................................AAAACTTGACACGTTGAGCTCGT....................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGCTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTCACACGTTGAGCTCGA....................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TTGAGATC--GTTTTAAAAACAAA.........................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCATGGGAT-GGATTA----CTT.............................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCGCGGGGT-GGATTA----CTGC------C.....................	20	1	1.00	0.00	1.00	0.00	0.00
.......................................................................GAGTTCCACTAAGCCAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................GAGTTCCACTAAGCGAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................GAGTTCCATTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................GAGTTCCACTAAACAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCTTGGGAT-GGATTA----CTGC------A.....................	20	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................TCGTTGGAT-GGATTA----CTGC------CG....................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................CGTTCCACTCAGCAAGTTTT...............................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.......................................................................GAGTTCCACTAAGCAAGTTTTG..............................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.......................................................................GAGTTCCACTAAGCAAGTT.................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGATCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................GAGTCCCACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................CACTTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AGCTTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................GAGTTCCACTAAGTAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00

droEug1

TTCT-----------GGG-------GAATCCC-CCTGAAA---------T----CTCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTT----CATCAGC--TTGA----------------AAG

Size

Hit Count

Total Norm

droBia1

ATCT-----------CT--------GC-TCCG-C---AA----------------TAGCTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCTT-GGCCC--------CACT--TCA-----------------AAA

Size

Hit Count

Total Norm

droTak1

TACA-----------GC----------AT--C-G---AAT---------------ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGAAT-GGCGCC----CA--ACT--TCAA----------------AGA

Size

Hit Count

Total Norm

droEle1

C--G-----------GG--------TAATCTC-CCAAAAA---------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACAA----CTTCAGT--TTAACAGAGTCCTACAAATAAAC

Size

Hit Count

Total Norm

droRho1

G-------------------------AATCCCCG---AAA---------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGAC-GGGCTA----CTTCAAT--TCAA----------------AAG

Size

Hit Count

Total Norm

droFic1

GTCC-----------CC--------GAATTCC-C---GGT---------------TCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACAA----CTCCAGCTTTCGC----------------AAG

Size

Hit Count

Total Norm

droKik1

ATAA-----------GT--------GAAA-GT-G---AAG---------------ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAGACAA----AAGCAA-----------------------CAA

Size

Hit Count

Total Norm

droAna3

TGTGTTTATTTTTTTTG--------GAA---------AAT---------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-AGATAA----TGTCAGC----AG----------------TAT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	130.00	24.00	23.00	80.00	3.00
.......................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	61.00	0.00	46.00	15.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTC...................................................	22	1	19.00	4.00	7.00	8.00	0.00
......................................................................CGAGTTCCACTAAGCAAGTTTT...............................................................................................	22	1	12.00	0.00	5.00	7.00	0.00
.......................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	11.00	0.00	7.00	4.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTCT..................................................	23	1	7.00	0.00	1.00	6.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	5.00	2.00	1.00	1.00	1.00
..................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	4.00	2.00	0.00	2.00	0.00
........................................................................AGTTCCACTAAGCAAGTTTT...............................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
..................................................................................................................AAATTGACACGTTGAGCTCGT....................................................	21	1	2.00	0.00	0.00	2.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCTT....................................................	21	1	2.00	0.00	0.00	2.00	0.00
..................................................................................................................AACTTGACACGTTGACCTCGT....................................................	21	1	2.00	1.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACCTTGAGCTCGT....................................................	21	1	2.00	1.00	0.00	1.00	0.00
..................................................................................................................AACTGGACACGTTGAGCTCGT....................................................	21	1	2.00	0.00	0.00	2.00	0.00
..................................................................................................................AACTTGACTCGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................................................................GATTTCCACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTGAG.........................................................	17	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................GACTTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
......................................................................CGAGTTCCACTAAGCAAGTTTG...............................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGATGCGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGATCTCGT....................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGCTGAGCGCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGGGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................AAGCTGGACACGTTGAG.........................................................	17	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................................CTGGTCAGTGGGGC-AGA.......................................	17	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACGTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGATACCTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCCT....................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................................................GAGTTCCACTAATCAAGTTTT...............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGGCTG.................................................	24	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGCTCAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
................................................................................................................AAACCTTGACACGTTGAGCTCG.....................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AAATTGACACGGTGAGC........................................................	17	1	1.00	0.00	0.00	1.00	0.00
...GTTGACTTTTTTTG--------GAA---------A.....................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................AAGTTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
......................................................................AGAGTTCCACTAACCAAGTTTT...............................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.......................................................................GAGTTCTACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGCTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGATGAGCTCGT....................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTCACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTTT..................................................	23	1	1.00	0.00	0.00	1.00	0.00
.......................................................................GAGTTCAACTAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTxACACGTTGAGCTCGT....................................................	20	1	1.00	1.00	0.00	0.00	0.00
.......................................................................GAGTTCCACTAAGCAAGTTTTG..............................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACGCGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGGCACGTTGAGCTCGTC...................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................AAACxGGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGA....................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTCA..................................................	23	1	1.00	0.00	0.00	1.00	0.00
..AGTTTACTTTTTTTG--------GAA---------A.....................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...GTTTATTTTTTTTG--------AAA---------AA....................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGATACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................................CTTGACACGTTGAGCTCGTCT..................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................AACGTGACACGTTGACCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTCAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCGTT...................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACCTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTAGACACGTTGATCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................................................................GAGCTCCACCAAGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGGTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACTTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTGGGCACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGATCGTC...................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACTTTGATCTCG.....................................................	20	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACATTGAGCTCGT....................................................	21	1	1.00	1.00	0.00	0.00	0.00

droBip1

TCTTGTAATTTTTTTTG--------GA------A---AAT---------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-AGATAC----GATCAACATTAAA----------------AAA

Size

Hit Count

Total Norm

dp4

TTCC-----------TG--------GAAGCC-----------------ATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG----------------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	64.00	6.00	2.00	55.00	1.00
.......................................................................GAGTTCCACCATGCAAGTTTT...............................................................................................	21	1	21.00	1.00	0.00	20.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTC......................................................	20	1	12.00	0.00	0.00	10.00	2.00
.................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	7.00	0.00	0.00	7.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	5.00	0.00	1.00	4.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	4.00	0.00	1.00	3.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	3.00	0.00	0.00	3.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTG...................................................	22	1	2.00	0.00	1.00	1.00	0.00
..................................................................................................................AAATTGACACGTTGAGCTCGT....................................................	21	1	2.00	0.00	0.00	2.00	0.00
..................................................................................................................AACTTGACACGTTACGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTAAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................AAACTTGACACGTTAAGC........................................................	18	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCT.......................................................	19	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTAACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTCGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGCTGAGCTCGTT...................................................	22	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTCGT....................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACTCGTTGTGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................AAACTCGACACGTTGAGCTC......................................................	20	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTA...................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	1.00	0.00	0.00	1.00	0.00
.......................................................................GAGTTCCACCATGCAAGTTT................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................AAACTTGACACGTTGAACTC......................................................	20	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTCAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................ACTTGACACGTTGAGCTCGTGT..................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................AAAATTGACACGTTGAGCTCGT....................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGCTGAGCGCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTAGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00

droPer1

TTCC-----------TG--------GAAGCC-----------------ATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGT--ATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTGC-AGCCAAATCATCGCAGC--GCAT----------------CCA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	160.00	3.00	3.00	52.00	73.00	29.00
.......................................................................GAGTTCCACCATGCAAGTTTT...............................................................................................	21	1	53.00	2.00	0.00	19.00	32.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	16.00	0.00	0.00	8.00	8.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	15.00	0.00	0.00	8.00	5.00	2.00
..................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	12.00	1.00	0.00	2.00	9.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTC......................................................	20	1	9.00	0.00	0.00	3.00	6.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	7.00	0.00	0.00	2.00	5.00	0.00
.......................................................................GAGTTCCACCATGCAAGTTT................................................................................................	20	1	7.00	2.00	0.00	2.00	3.00	0.00
......................................................................CGAGTTCCACCATGCAAGTTTT...............................................................................................	22	1	7.00	0.00	0.00	3.00	4.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTCGT....................................................	23	1	7.00	1.00	0.00	3.00	3.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTG...................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
..................................................................................................................AACTTGACACGTTGCGCTCGT....................................................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	2.00	0.00	0.00	0.00	2.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	2.00	0.00	0.00	0.00	2.00	0.00
.......................................................................GAGTTCCACCATGCAAGT..................................................................................................	18	1	2.00	0.00	0.00	0.00	2.00	0.00
..................................................................................................................AACTTGACACGCTGAGCTCGT....................................................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
.................................................................................................................AAACTTGACACGTTGAGCACA.....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACGCGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................................AATCTTGACACGTTGAGCTCG.....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTAAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AATTTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGTGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................GAGTTCCACCATGCAAGCTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................GAGTTCCACCATCCACGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................................................................................................C-AGCCAAATCGTCGCAGC--T......................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................................GAGGTCCACCATGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................CAGGTCCACCATGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................................AAACxTCACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGACCTCTTG...................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AAATTGAAACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACAAGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGxxACGTTGAGCTCGT....................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTTGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACCTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGGTGAGCTCG.....................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................AGCC-----------------ATCTAGGAGCTGGT.............................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCT.......................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................................................................GAGTTCCACCCTGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AAATTGACACGTTAAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGCGCT.......................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................GAGCTCCATCATGCAAGTTT................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AAATTGACACGTCGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGATACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................GAGCTCCACCATGCAAGATTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................................AAACTTCACACGTTGAGTTCG.....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGCACTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................................................................GAGTTCCACAATGCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AGCTTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACCCGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTC......................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTCGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

droWil1

TTTA-----------------------------------T---------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGAC-AGAACGAA--CAACAAA--TGAA----------------GAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	1440.00	17.00	149.00	226.00	1048.00
......................................................................TGAGTTCCACTAAGCAAGTTTT...............................................................................................	22	1	115.00	0.00	3.00	108.00	4.00
..................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	85.00	0.00	0.00	0.00	85.00
.......................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	62.00	0.00	12.00	49.00	1.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	57.00	3.00	0.00	6.00	48.00
..................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	48.00	0.00	0.00	2.00	46.00
....................................................................................................................CTTGACACGTTGAGCTCGTCT..................................................	21	1	31.00	0.00	0.00	0.00	31.00
.................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	25.00	0.00	0.00	0.00	25.00
..................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	23.00	0.00	1.00	0.00	22.00
......................................................................TGAGTTCCACTAAGCAAGTTT................................................................................................	21	1	22.00	0.00	1.00	21.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	21.00	2.00	10.00	5.00	4.00
.....................................................................ATGAGTTCCACTAAGCAAGTTT................................................................................................	22	1	21.00	0.00	0.00	21.00	0.00
.....................................................................ATGAGTTCCACTAAGCAAGTT.................................................................................................	21	1	14.00	0.00	0.00	14.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTCT..................................................	23	1	9.00	0.00	0.00	0.00	9.00
..................................................................................................................AACTTGACACGTTGATCTCGT....................................................	21	1	8.00	0.00	0.00	1.00	7.00
.......................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	7.00	0.00	1.00	6.00	0.00
......................................................................TGAGTTCCACTAAGCAAGTT.................................................................................................	20	1	4.00	0.00	0.00	4.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	4.00	0.00	0.00	0.00	4.00
.................................................................................................................AAACTTGACACGTTGAGCTC......................................................	20	1	4.00	0.00	0.00	0.00	4.00
..................................................................................................................AACTTGACACGTTGGGCTCGT....................................................	21	1	4.00	0.00	0.00	1.00	3.00
....................................................................................................................CTTGACACGTTGAGCTCGTCC..................................................	21	1	4.00	0.00	0.00	0.00	4.00
......................................................................TGAGTTCCACTAAGCAAGTTTTT..............................................................................................	23	1	3.00	0.00	0.00	3.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCGG....................................................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................AGTTCCACTAAGCAAGTTTT...............................................................................................	20	1	3.00	0.00	1.00	2.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCGC....................................................	22	1	3.00	0.00	0.00	0.00	3.00
..................................................................................................................AGCTTGACACGTTGAGCTCGT....................................................	21	1	3.00	0.00	0.00	1.00	2.00
.....................................................................ATGAGTTCCACTAAGCAAGTTTT...............................................................................................	23	1	3.00	0.00	0.00	3.00	0.00
..................................................................................................................AACTTGACACGTAGAGCTCGT....................................................	21	1	3.00	0.00	0.00	0.00	3.00

droVir3

TTCA-----------AG--------AGCAGCT-C---GCG---------------CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-GGCATT--------------C------------------AAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	122.00	7.00	31.00	0.00	6.00	78.00
........................................................................AGTTCCACTAATCAAGTTTTG..............................................................................................	21	1	64.00	2.00	59.00	1.00	0.00	2.00
........................................................................AGTTCCACTAATCAAGTTTTGA.............................................................................................	22	1	43.00	1.00	42.00	0.00	0.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	29.00	2.00	8.00	0.00	0.00	19.00
.................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	22.00	0.00	3.00	0.00	0.00	19.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	12.00	3.00	4.00	1.00	0.00	4.00
..................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	10.00	0.00	0.00	0.00	0.00	10.00
..................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	8.00	0.00	4.00	0.00	2.00	2.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	6.00	0.00	2.00	0.00	0.00	4.00
........................................................................AGTTCCACTAATCAAGTTTT...............................................................................................	20	1	6.00	0.00	6.00	0.00	0.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTC......................................................	21	1	5.00	0.00	2.00	0.00	1.00	2.00
..................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	5.00	0.00	1.00	0.00	0.00	4.00
.......................................................................GAGTTCCACTAATCAAGTTTT...............................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..................................................................................................................AGCTTGACACGTTGAGCTCGT....................................................	21	1	3.00	0.00	1.00	0.00	0.00	2.00
........................................................................AGTTCCACTAATCAAGTTT................................................................................................	19	1	2.00	0.00	2.00	0.00	0.00	0.00
........................................................................AGTTCCACTAATCAAGTTTTGT.............................................................................................	22	1	2.00	0.00	2.00	0.00	0.00	0.00
............................................................................................GAGCGT--ATTCGAAAGTCGAA.........................................................................	20	1	2.00	0.00	0.00	0.00	0.00	2.00
.........................................................................................................AAAGTCGAAAACTTGACACGTTGAGCT.......................................................	27	1	2.00	0.00	0.00	0.00	0.00	2.00
................................................................................................................AAAACTTGACACGTTGAGCTCT.....................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTCCACTAATCACGTTTTGA.............................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTC......................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................................................G--ATTCGAAAGTCGAAAACTTGA..................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTTAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................AGTTCCACTGATCATGTTTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGCGATCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTGCGCCCGT....................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................GAGTTCCACTAATCAAGTTT................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTCGACTAATCAAGTTTT...............................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCGTTT..................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTCCACTAATCAAGTTTTT..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTTAGCT.......................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGTTAGGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................................................................................................ACTTGACACGTTGAGCTCGTC...................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................AGTTCCGCTAATCAAGTTTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGCTCCACTAATCAAGTTTT...............................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................GAGTTCCACTAATCAAGTT.................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................................................................GAGCGG--ATTCGAAAGTCG...........................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................................................................GAAAACTTGACACGTTGAGCTCG.....................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGTCCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCC.......................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................AGTTCCACTAATCAAGTCTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTCCACTAATCACGTTTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGGTCCACTAATCAAGTTTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGATCCACTAATCAAGTTTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTCCACTAATCCCGTTTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................GAGTTCCACTAATCAAATTTT...............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGCTCGTC...................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGATGAGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTCCACTAAGCAAGATTTGA.............................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCGTT...................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AGCTTGACACGTTGACCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................................AGACTTGACACGTTGAGCTCG.....................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTCCACTAATAAAGTTTCG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTACACTAATCAAGTTTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTCCACTAATCAGGTTTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................................................................................................CTTGACACGTTGAGCTCGTTT..................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................AGTTCCACTAATTAAGTTTTGAG............................................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACCCGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................AACTTGACACGTTGAGCTT......................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................AGATCCACTAATCAAGTTTTGA.............................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................GAGTTGCCCTAATCAAGTTT................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCGCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTGACCTCGC....................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
......................................................................CGAGTTCCACTAATCAAGTTT................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTCCACAAATCAAGATTTGA.............................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGTTCCACTAAGCAAGATTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................AGGTCCACTAATCATGTTTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGTCGAGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................CACTTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..............................................................................................................CGAAAACTTGACACGTTGAGC........................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00

droMoj3

TCCT-----------TATCCATACCATATCCA-C---ATT---------------TGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAGT----GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGGC---ACAA----GTTCAACAA--AA----------------GCA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	130.00	40.00	50.00	36.00	4.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	19.00	16.00	1.00	2.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	7.00	2.00	3.00	2.00	0.00
...............................................................................................................AAAAACTTGACACGTTGAGCTCG.....................................................	23	1	6.00	1.00	5.00	0.00	0.00
.......................................................................GAGTTCCACTAATCAAGTTTT...............................................................................................	21	1	3.00	0.00	0.00	2.00	1.00
........................................................................AGTTCCACTAATCAAGTTTTG..............................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
........................................................................AGTTCCACTAATCAAGTTTTGA.............................................................................................	22	1	3.00	1.00	2.00	0.00	0.00
...............................................................................................................AAAAACTTGACACGTTGAGCTCGT....................................................	24	1	3.00	2.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	3.00	1.00	0.00	2.00	0.00
..................................................................................................................AACTTGACACGTTGAGATCGT....................................................	21	1	2.00	1.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGCGCTCGT....................................................	21	1	2.00	0.00	0.00	2.00	0.00
........................................................................AGTTCCACTAATCAAGTTT................................................................................................	19	1	2.00	0.00	1.00	1.00	0.00
...............................................................................................................AAAAACTTGACACGTTGAGCT.......................................................	21	1	2.00	0.00	1.00	1.00	0.00
..................................................................................................................AGGTTGACACGTTGAGCTCGTC...................................................	22	1	1.00	0.00	0.00	1.00	0.00
.......................................................................GAGTTCCACTCATCAAGTTTT...............................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................AAAAACTTGACACGTTGAG.........................................................	19	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACGCGTTGAGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................GAGTTCCACTAATCAAGTTT................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.......................................................................GAGTTCCACTAATCCAATTTT...............................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................AAAAACTTGACACGTTGATC........................................................	20	1	1.00	0.00	0.00	1.00	0.00
......................................................................CGAGTTCCACTAAGCAAGTTTT...............................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGATCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................AGTTCCACTAATCAATTTTTG..............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................CAACTTGACACGTTGAGCTCGT....................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................AAACTTGACACGTTGAGCTCGTT...................................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTAACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................AGTTCCACTAATCAAGTTTT...............................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AAGGTGACACGTTGAGCTCGT....................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................AACTTGACACGTTGAGCTCTT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................GCGAGTTCCACTAATCAAG...................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................AACTTGACACGTTGAACTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGGTGAGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................AAAAACTTGACACGTTGAGCTC......................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACGCGTTGAGCTCGTT...................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................AAAACTTGACACGTTGAGCTCGTT...................................................	24	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................AACTTGACACGCTGAGCTCGT....................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................AGTTCCACTAAGCAAGTTGT...............................................................................................	20	1	1.00	0.00	1.00	0.00	0.00

droGri2

TTCGGTTTGTTCTTTT----------------------ACAGCAGTGCATCCGGGTGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGCGT--ATT-TGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTT-GCGGAA----A-TCAACTTACTC----------------AAA	Size	Hit Count	Total Norm	V109 Male body
...............................................................................................................AAAAACTTGACACGTTGAGCTCG.....................................................	23	1	30.00	30.00
..................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	6.00	6.00
..................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	4.00	4.00
.................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	3.00	3.00
...............................................................................................................AAAAACTTGACACGTTGAGCT.......................................................	21	1	2.00	2.00
...............................................................................................................AAAAACTTGACACGTTGAGCTCGT....................................................	24	1	1.00	1.00
...............................................................................................................AAAAACTTGACACGTTGGGCTCG.....................................................	23	1	1.00	1.00
...............................................................................................................AAAAACTTGACGCGTTGAGCTCG.....................................................	23	1	1.00	1.00
...............................................................................................................AAAAACTTGACACGTTGAGCTTG.....................................................	23	1	1.00	1.00

Generated: 04/20/2012 at 05:19:04 EDT

dme-mir-969

chrX:18018390-18018483 +

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup