dme-mir-969- 12- and 20-way alignments

dme-mir-969	chrX:18018390-18018483 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 18018408-18018428
   star strand at position 18018449-18018469
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:18018375-18018498 +	TTCGGTGAA------------------------------------------TCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGG--ACT-----------------------ACTGCAATTCGAAAT---------
droSim1	chrU:15519348-15519471 +	TTCGGGGAA------------------------------------------TCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGG--ACT-----------------------ACTGCAATTCAAAAT---------
droSec1	super_8:326574-326685 +	TTCGAGGAA------------------------------------------TCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGG--ACT-----------------------ACT---------------------
droYak2	chrX:16642309-16642432 +	TTCGGGGTA------------------------------------------TCC--CCAAACCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGATGG--TCT-----------------------ACCGCAATTCGAAAG---------
droEre2	scaffold_4690:8346009-8346128 +	TTTGGGAAG------------------------------------------TTC--CCAAATCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGG--ATT-----------------------ACTGC----CGAAAG---------
droAna3	scaffold_13335:1607974-1608111 -	TTTTAGAAAATGTGTTTATTTTTTTT--------------------------GG--AAAATATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAATT--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGCAG--ATA-----------------------ATGTCA-----GCA------GTAT
dp4	chrXL_group3a:1977519-1977620 -	TTCCTGGAA------------------------------------------GCCATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTA-TATGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG---------------------------------------------------------
droPer1	super_11:2701270-2701371 +	TTCCTGGAA------------------------------------------GCCATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTA-TATGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG---------------------------------------------------------
droWil1	scaffold_181096:12029390-12029491 +	TTTAT--------------------------------------------------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCATA--TTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGACAG--AA---------------------------------CGAACA---------
droVir3	scaffold_12928:1264080-1264207 -	CTTTCAAGA------------------------------------------GCAGCTCGCGCTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGGA--TTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGGCGG--CAT-----------------------T---CAAGCCAGAAG----AGCAC
droMoj3	scaffold_6473:13724265-13724424 +	CTGGGTAAG---------TTGCTCAAGAGCCCAATCCTTATCCATACCATATCC--ACATTTGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAG--TG--TTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGGC----ACA-----------------------AGTTCAA--CAAAAGCAACAGATC
droGri2	scaffold_15203:8445730-8445900 +	TTCGGTTTG---------TTCTTTTACAGCAG-------------------TGCATCCGGGTGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAG--CGTA-TTTGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTTGCGGAAATCAACTTACTCAAATCTGCTATAAGTTTAT--TAAAGAAAAAAAATA

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:18018375-18018498 +	NA	TTCG-----------GT--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CTGCAAT--TCGA----------------AAT
droSim1	chrU:15519348-15519471 +	2	TTCG-----------GG--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CTGCAAT--TCAA----------------AAT
droSec1	super_8:326574-326685 +	3	TTCG-----------AG--------GAATCCC-C---AAG---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTA----CT------------------------------
droYak2	chrX:16642309-16642432 +	2	TTCG-----------GG--------GTATCCC-C---AAA---------------CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGAT-GGTCTA----CCGCAAT--TCGA----------------AAG
droEre2	scaffold_4690:8346009-8346128 +	1	TTTG-----------GG--------AAGTTCC-C---AAA---------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGATTA----CTGC------CGA----------------AAG
droEug1	scf7180000408176:664516-664647 -	2	TTCT-----------GGG-------GAATCCC-CCTGAAA---------T----CTCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACTT----CATCAGC--TTGA----------------AAG
droBia1	scf7180000301760:584976-585092 -	4	ATCT-----------CT--------GC-TCCG-C---AA----------------TAGCTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCTT-GGCCC--------CACT--TCA-----------------AAA
droTak1	scf7180000415843:458223-458340 -	2	TACA-----------GC----------AT--C-G---AAT---------------ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGAAT-GGCGCC----CA--ACT--TCAA----------------AGA
droEle1	scf7180000491193:225601-225743 +	1	C--G-----------GG--------TAATCTC-CCAAAAA---------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACAA----CTTCAGT--TTAACAGAGTCCTACAAATAAAC
droRho1	scf7180000779986:498587-498706 -	4	G-------------------------AATCCCCG---AAA---------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGAC-GGGCTA----CTTCAAT--TCAA----------------AAG
droFic1	scf7180000453872:337515-337642 -	4	GTCC-----------CC--------GAATTCC-C---GGT---------------TCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGAT-GGACAA----CTCCAGCTTTCGC----------------AAG
droKik1	scf7180000302696:1720093-1720210 +	1	ATAA-----------GT--------GAAA-GT-G---AAG---------------ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAGACAA----AAGCAA-----------------------CAA
droAna3	scaffold_13335:1607974-1608101 -	1	TGTGTTTATTTTTTTTG--------GAA---------AAT---------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-AGATAA----TGTCAGC----AG----------------TAT
droBip1	scf7180000395454:59919-60050 +	1	TCTTGTAATTTTTTTTG--------GA------A---AAT---------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-AGATAC----GATCAACATTAAA----------------AAA
dp4	chrXL_group3a:1977519-1977620 -	4	TTCC-----------TG--------GAAGCC-----------------ATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG----------------------------------------------
droPer1	super_11:2701270-2701398 +	1	TTCC-----------TG--------GAAGCC-----------------ATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGT--ATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTGC-AGCCAAATCATCGCAGC--GCAT----------------CCA
droWil1	scaffold_181096:12029390-12029503 +	1	TTTA-----------------------------------T---------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGAC-AGAACGAA--CAACAAA--TGAA----------------GAA
droVir3	scaffold_12928:1264092-1264205 -	8	TTCA-----------AG--------AGCAGCT-C---GCG---------------CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGGC-GGCATT--------------C------------------AAG
droMoj3	scaffold_6473:13724290-13724417 +	1	TCCT-----------TATCCATACCATATCCA-C---ATT---------------TGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAGT----GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGGC---ACAA----GTTCAACAA--AA----------------GCA
droGri2	scaffold_15203:8445730-8445869 +	1	TTCGGTTTGTTCTTTT----------------------ACAGCAGTGCATCCGGGTGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGCGT--ATT-TGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTT-GCGGAA----A-TCAACTTACTC----------------AAA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TTCGGTGAA------------------------------------------TCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGG--ACT-----------------------ACTGCAATTCGAAAT---------

Size

Hit Count

Total Norm

droSim1

TTCGGGGAA------------------------------------------TCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGG--ACT-----------------------ACTGCAATTCAAAAT---------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	863.00	4.00	598.00	11.00	250.00
.................................................................................................TGAGATCA--TTTTAAAAGC.......................................................................................	18	2	71.50	0.00	51.50	9.00	11.00
........................................................................................................................AACTTGACACGTTGAGCTCGG...............................................................	21	1	104.00	0.00	54.00	2.00	48.00
........................................................................................................................AACTTGACACGTTGAGCTCG................................................................	20	1	55.00	0.00	39.00	3.00	13.00
.................................................................................................TGAGATCA--TTTTGAAAAC.......................................................................................	18	2	20.50	0.00	15.00	1.50	4.00
........................................................................................................................AACTTGACACGTTGAGCTCGC...............................................................	21	1	36.00	0.00	26.00	1.00	9.00
.................................................................................................TGAGATCG--TTTTGAAAGC.......................................................................................	18	2	10.00	0.00	4.50	3.00	2.50
.......................................................................................................................AAACTTGACACGTTGAGCTCG................................................................	21	1	4.00	0.00	3.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGATCTCG................................................................	20	1	3.00	0.00	3.00	0.00	0.00
.............................................................................GAGTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	3.00	1.00	2.00	0.00	0.00
................................................................................................TTGAGATCG--TTTTAAAAACAAAAACT................................................................................	26	1	3.00	0.00	3.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTC.................................................................	19	1	2.00	0.00	2.00	0.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTC.................................................................	21	1	2.00	0.00	2.00	0.00	0.00
........................................................................................................................AACTCGACACGTTGAGCTCGT...............................................................	21	1	2.00	0.00	2.00	0.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	2.00	0.00	2.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	2.00	1.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGATCTCGT...............................................................	21	1	2.00	0.00	2.00	0.00	0.00
.............................................................................................................................................TCGTGGGATGG--ACT-----------------------ACTGC...................	19	1	1.00	0.00	1.00	0.00	0.00
................................................................................................TTGAGATCG--TTTTAAAAACAA.....................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTC.................................................................	20	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTTACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
......................................................................................................................AAAACTTGACACGTTGAGCTCG................................................................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................................AAAACTTCACACGTTGAGCTC.................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...........................................................................CCGTGGTCCACTAAGCAAGTTT...........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCAT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................AACTGACACGTTGAGCTCGT...............................................................	20	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCTCGTTT.............................................................	23	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGGGATCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACxTGACACGTTGAGCTCGG...............................................................	20	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGCGCTCGT...............................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................TTTGAGATCG--TTTTAAAA.........................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACTTTGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
.............................................................................CAGTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.............................................................................GAGTTCCACTAAGCAAGTTT...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCGCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................TACTTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGGTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGATCTCGC...............................................................	21	1	1.00	0.00	1.00	0.00	0.00

droSec1

TTCGAGGAA------------------------------------------TCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGG--ACT-----------------------ACT---------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	103.00	23.00	35.00	45.00
.............................................................................GAGTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	85.00	2.00	0.00	83.00
.............................................................................GAGTTCCACTAAGCAAGTTT...........................................................................................................	20	1	33.00	1.00	0.00	32.00
........................................................................................................................AATTTGACACGTTGAGCTCGT...............................................................	21	1	3.00	0.00	3.00	0.00
..............................................................................AGTTCCACTAAGCAAGTTTT..........................................................................................................	20	1	2.00	0.00	0.00	2.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	2.00	0.00	2.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	2.00	0.00	1.00	1.00
..................................................................................................GAGATCG--TTTTAAAAACAAA....................................................................................	20	1	2.00	0.00	2.00	0.00
...................................................................................................................................TTGAGCTCGTTCGTGGGATGG--..................................................	21	1	1.00	0.00	0.00	1.00
.............................................................................GAGTTCCACTAAGCAAGT.............................................................................................................	18	1	1.00	0.00	0.00	1.00
........................................................................................................................AACTCGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCTCG................................................................	20	1	1.00	0.00	1.00	0.00
...........................................................................................................................TTGACACGTTGAGCTCGTTCGT...........................................................	22	1	1.00	0.00	0.00	1.00
............................................................................TGAGTTCCACTAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGCGCCCGT...............................................................	21	1	1.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTTGT...............................................................	21	1	1.00	0.00	0.00	1.00
.............................................................................GATTTCCACTAAGCAAGTTT...........................................................................................................	20	1	1.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCTCGTA..............................................................	22	1	1.00	0.00	0.00	1.00
.............................................................................GAGTTACACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGCGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00
.............................................................................GAGCTCCACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	1.00
...........................................................................................................................TTGACACGTTGAGCTCGTTCGTGT.........................................................	24	1	1.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAACTCGT...............................................................	21	1	1.00	0.00	0.00	1.00
............................................................................CGAGTTCCACTAAGCAAGTT............................................................................................................	20	1	1.00	0.00	0.00	1.00
............................................................................................................................GGACACGTTGAGCTCGTTCGT...........................................................	21	1	1.00	0.00	0.00	1.00
.................................................................................................TGAGATCG--TTTTGAAAGC.......................................................................................	18	2	0.50	0.00	0.50	0.00
..............................................................................AGTTCCACTAAGCAAGTTT...........................................................................................................	19	1	1.00	0.00	0.00	1.00
.............................................................................GAGTTCCACTAGGCAAGTTT...........................................................................................................	20	1	1.00	0.00	0.00	1.00

droYak2

TTCGGGGTA------------------------------------------TCC--CCAAACCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGATGG--TCT-----------------------ACCGCAATTCGAAAG---------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	276.00	6.00	39.00	12.00	76.00	143.00
.............................................................................GAGTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	58.00	0.00	15.00	0.00	42.00	1.00
.................................................................................................TGAGATCA--TTTTAAAAGC.......................................................................................	18	2	14.00	0.00	0.00	0.00	0.00	14.00
........................................................................................................................AACTTGACACGTTGAGCTCGG...............................................................	21	1	21.00	0.00	0.00	0.00	0.00	21.00
........................................................................................................................AACTTGACACGTTGAGCTCG................................................................	20	1	10.00	0.00	1.00	0.00	0.00	9.00
.............................................................................GAGTTCCACTAAGCAAGTTT...........................................................................................................	20	1	9.00	0.00	1.00	0.00	8.00	0.00
.................................................................................................TGAGATCG--TTTTGAAAGC.......................................................................................	18	2	4.50	0.00	0.00	0.00	0.50	4.00
.................................................................................................TGAGATCA--TTTTGAAAAC.......................................................................................	18	2	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	5.00	0.00	1.00	0.00	1.00	3.00
........................................................................................................................AACTTGACACGTTGCGCTCGT...............................................................	21	1	5.00	0.00	0.00	0.00	5.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	5.00	1.00	0.00	1.00	1.00	2.00
........................................................................................................................AACTTGACACGTTGAGCTCGC...............................................................	21	1	5.00	0.00	0.00	0.00	1.00	4.00
.............................................................................................................................................TTGTGGGATGG--TCT-----------------------ACCGC...................	19	1	5.00	0.00	2.00	0.00	3.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTCG................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................................................................................AAACTTGACACGTTGAGCTCG................................................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
........................................................................................................................AACTTGACACGTTGACCTCGT...............................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................TTGAGATCG--TTTTAAAAACAAAAACT................................................................................	26	1	3.00	0.00	0.00	0.00	0.00	3.00
......................................................................................................................AAAACTTGACACGTTGAGCTC.................................................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
........................................................................................................................AACTTGACACGTTGGGCTCGT...............................................................	21	1	2.00	0.00	0.00	0.00	1.00	1.00
........................................................................................................................AACTTGACACGTTGTGCTCGT...............................................................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
................................................................................................TTGAGATCG--TTTTAAAAACAAA....................................................................................	22	1	2.00	0.00	0.00	0.00	0.00	2.00
.............................................................................GAGATCCACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................GAGTTCCACTAAGCAAGTTTTT.........................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................................................................................TTGTGGGATGG--TCT-----------------------ACCGCA..................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................................................TTGAGATCG--TTTTAAAAACAAAAAC.................................................................................	25	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCTCGTTT.............................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................GAGCTCCAATAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTAAGCTCGTT..............................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTAAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGCGCGCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................................................................................................CTTGACACGTTGAGCTCGTCT.............................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................GAGTTCCACTACGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACGTGACACGTTGATCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTTGG...............................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................GAGCTCCACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................TGAGATCA--TTTTAAAATC.......................................................................................	18	2	0.50	0.00	0.00	0.00	0.50	0.00
........................................................................................................................AACGTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................................................CGAGTTCCACCATGCAAGTTT...........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAACTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTTA.............................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................GAGATCG--TTTTAAAAACAAA....................................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCTCTT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................................................CGAGTTCCACTAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................GAGGTCCATTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
................................................................................................TTGAGATCG--TTTTAAAAACAA.....................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCTC.................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................GAGTTCCACTAAGCAAGTTTTA.........................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................GAGTTCCACCATGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTCT.............................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGCTGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTAACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTTGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................................................TTGAGATCG--TTTTAAAAACA......................................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCCCGT...............................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGCTGCGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................GAGTTCCACTAAGCAAGTTTG..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................................................CAACTTGACACGTTGAGCTCGT...............................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGCTGAGCTCG................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGATCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00

droEre2

TTTGGGAAG------------------------------------------TTC--CCAAATCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGG--ATT-----------------------ACTGC----CGAAAG---------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.............................................................................GAGTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	206.00	0.00	9.00	0.00	197.00
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	180.00	5.00	26.00	0.00	149.00
.............................................................................................................................................TCGTGGGATGG--ATT-----------------------ACTGC----...............	19	1	47.00	1.00	3.00	0.00	43.00
.............................................................................GAGTTCCACTAAGCAAGTTT...........................................................................................................	20	1	43.00	0.00	3.00	0.00	40.00
..............................................................................AGTTCCACTAAGCAAGTTTT..........................................................................................................	20	1	8.00	0.00	2.00	0.00	6.00
.............................................................................................................................................TCGTGGGATGG--ATT-----------------------ACTGC----C..............	20	1	8.00	1.00	2.00	0.00	5.00
........................................................................................................................AACTTGACACGTTGAGCTCG................................................................	20	1	6.00	0.00	0.00	0.00	6.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	5.00	0.00	2.00	1.00	2.00
........................................................................................................................AACTTGACACGTTTAGCTCGT...............................................................	21	1	3.00	0.00	0.00	1.00	2.00
.............................................................................................................................................TCGTGGGATGG--ATT-----------------------ACTGC----CT.............	21	1	3.00	0.00	0.00	0.00	3.00
.............................................................................................................................................TCGTGGGATGG--ATT-----------------------ACTGC----CG.............	21	1	3.00	0.00	0.00	0.00	3.00
................................................................................................TTGAGATCG--TTTTAAAAACAAAAACT................................................................................	26	1	3.00	0.00	0.00	0.00	3.00
.............................................................................GATTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	2.00	0.00	0.00	0.00	2.00
........................................................................................................................AACTTGACACGTTGAGCTCGTA..............................................................	22	1	2.00	0.00	1.00	0.00	1.00
.............................................................................GAGTTCCACTAATCAAGTTTT..........................................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
.............................................................................GAGTTCCACTAAGCAAGTTTTA.........................................................................................................	22	1	2.00	0.00	1.00	0.00	1.00
.............................................................................GAGTTCAACTAAGCAAGTTTT..........................................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
........................................................................................................................AACTTGACACGTCGAGCTCGT...............................................................	21	1	2.00	0.00	0.00	0.00	2.00
.............................................................................................................................................TCGTGGGATGG--ATT-----------------------ACTG....................	18	1	2.00	0.00	0.00	0.00	2.00
........................................................................................................................AACTTAACACGTTGAGCTCCT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
......................................................................................................................AAAACTTGACACGTTGAGCTCG................................................................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACGCGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCTTGGGATGG--ATT-----------------------ACTGC----...............	19	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCGTGGTATGG--ATT-----------------------ACTGC----CG.............	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................GCTTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGTTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................GAGTTCCAATAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTAAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCGTGGGATGG--ATT-----------------------ACTT....................	18	1	1.00	0.00	0.00	0.00	1.00
..............................................................................AGTTCCACTAAGAAAGTTTT..........................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..............................................................................AGTTCCACTAATCAAGTTTTG.........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.............................................................................TAGTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCGTTGGATGG--ATT-----------------------ACTGC----...............	19	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................GAGATCG--TTTTAAAAACAAA....................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCGTGGGATGG--TTT-----------------------ACTGC----...............	19	1	1.00	0.00	1.00	0.00	0.00
.............................................................................GAGTTCCACTCAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................GAGTTCTACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTTACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................GAGTTCCACTAACCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCGTGGGATGG--ATT-----------------------ACTGC----CA.............	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGAAACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGATCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
.............................................................................................................................................TCGTGGGATGG--ATT-----------------------ACTCC----...............	19	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCGTGGGATGG--ATT-----------------------ACTA....................	18	1	1.00	0.00	0.00	0.00	1.00
......................................................................................................................AAAACTTGACACGTTGAGCTCGT...............................................................	23	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGCTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTCACACGTTGAGCTCGA...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
................................................................................................TTGAGATCG--TTTTAAAAACAAA....................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCATGGGATGG--ATT-----------------------ACTT....................	18	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCGCGGGGTGG--ATT-----------------------ACTGC----C..............	20	1	1.00	0.00	1.00	0.00	0.00
.............................................................................GAGTTCCACTAAGCCAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................GAGTTCCACTAAGCGAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................GAGTTCCATTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................GAGTTCCACTAAACAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCTTGGGATGG--ATT-----------------------ACTGC----A..............	20	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................TCGTTGGATGG--ATT-----------------------ACTGC----CG.............	21	1	1.00	0.00	0.00	0.00	1.00
..............................................................................CGTTCCACTCAGCAAGTTTT..........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.............................................................................GAGTTCCACTAAGCAAGTTTTG.........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................GAGTTCCACTAAGCAAGTT............................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGATCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
.............................................................................GAGTCCCACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................CACTTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AGCTTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
.............................................................................GAGTTCCACTAAGTAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00

droAna3

TTTTAGAAAATGTGTTTATTTTTTTT--------------------------GG--AAAATATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAATT--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGCAG--ATA-----------------------ATGTCA-----GCA------GTAT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	130.00	24.00	23.00	80.00	3.00
.............................................................................GAGTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	61.00	0.00	46.00	15.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTC..............................................................	22	1	19.00	4.00	7.00	8.00	0.00
............................................................................CGAGTTCCACTAAGCAAGTTTT..........................................................................................................	22	1	12.00	0.00	5.00	7.00	0.00
.............................................................................GAGTTCCACTAAGCAAGTTT...........................................................................................................	20	1	11.00	0.00	7.00	4.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTCT.............................................................	23	1	7.00	0.00	1.00	6.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	5.00	2.00	1.00	1.00	1.00
........................................................................................................................AACTTGACACGTTGAGCTCG................................................................	20	1	4.00	2.00	0.00	2.00	0.00
..............................................................................AGTTCCACTAAGCAAGTTTT..........................................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
........................................................................................................................AACTTGACACCTTGAGCTCGT...............................................................	21	1	2.00	1.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCTT...............................................................	21	1	2.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTTGACACGTTGACCTCGT...............................................................	21	1	2.00	1.00	0.00	1.00	0.00
........................................................................................................................AAATTGACACGTTGAGCTCGT...............................................................	21	1	2.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTGGACACGTTGAGCTCGT...............................................................	21	1	2.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTTT.............................................................	23	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACATTGAGCTCGT...............................................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTCACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGGGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
.............................................................................GAGTTCAACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACGTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAGCTGGACACGTTGAG....................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCG................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACxGGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTAGACACGTTGATCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGATACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACCTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTxACACGTTGAGCTCGT...............................................................	20	1	1.00	1.00	0.00	0.00	0.00
.............................................................................GAGCTCCACCAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACTCGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
............................................................................CGAGTTCCACTAAGCAAGTTTG..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGTT..............................................................	23	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGATACCTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGCTGAGCGCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACGTGACACGTTGACCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTGGGCACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGTTGAG....................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.......AAATGTGTTTAGCTTTTT...................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGGCACGTTGAGCTCGTC..............................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCCT...............................................................	21	1	1.00	1.00	0.00	0.00	0.00
.............GTTGACTTTTTTT--------------------------GG--AAA.................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGGTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
............AGTTTACTTTTTTT--------------------------GG--AAA.................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGCTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........AATGCGATTATTTTTTTT--------------------------........................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCTC.................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.............................................................................GAGTTCTACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGATCTCGT...............................................................	21	1	1.00	1.00	0.00	0.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTCG................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.............GTTTATTTTTTTT--------------------------GA--AAAA................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACTTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................GACTTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGCTCAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................................CTTGACACGTTGAGCTCGTCT.............................................................	21	1	1.00	1.00	0.00	0.00	0.00
.............................................................................GAGTTCCACTAAGCAAGTTTTG.........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGATGCGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGATGAGCTCGT...............................................................	21	1	1.00	1.00	0.00	0.00	0.00
.............................................................................GAGTTCCACTAATCAAGTTTT..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AAATTGACACGGTGAGC...................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.............................................................................GATTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......ATATxTGTTTATTTTTTTT--------------------------........................................................................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25
........................................................................................................................AACTTGACACTTTGATCTCG................................................................	20	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACGCGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGATCGTC..............................................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGC...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
............................................................................AGAGTTCCACTAACCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGGCTG............................................................	24	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................................CTGGTCAGTGGGGCAG--A.................................................	17	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGA...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTCAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTCA.............................................................	23	1	1.00	0.00	0.00	1.00	0.00
......................................................................................................................AAACCTTGACACGTTGAGCTCG................................................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AAGTTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00

dp4

TTCCTGGAA------------------------------------------GCCATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTA-TATGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG---------------------------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	64.00	6.00	2.00	55.00	1.00
.............................................................................GAGTTCCACCATGCAAGTTTT..........................................................................................................	21	1	21.00	1.00	0.00	20.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTC.................................................................	20	1	12.00	0.00	0.00	10.00	2.00
.......................................................................................................................AAACTTGACACGTTGAGCTCG................................................................	21	1	7.00	0.00	0.00	7.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCG................................................................	20	1	5.00	0.00	1.00	4.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	4.00	0.00	1.00	3.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTG..............................................................	22	1	2.00	0.00	1.00	1.00	0.00
........................................................................................................................AAATTGACACGTTGAGCTCGT...............................................................	21	1	2.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTTGACACGTTACGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTAAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGTTAAGC...................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCT..................................................................	19	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTAACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTCGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGCTGAGCTCGTT..............................................................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTCGT...............................................................	23	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACTCGTTGTGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTCGACACGTTGAGCTC.................................................................	20	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTA..............................................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTC.................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.............................................................................GAGTTCCACCATGCAAGTTT...........................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGTTGAACTC.................................................................	20	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTCAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................................ACTTGACACGTTGAGCTCGTGT.............................................................	22	1	1.00	1.00	0.00	0.00	0.00
.......................................................................................................................AAAATTGACACGTTGAGCTCGT...............................................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGCTGAGCGCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTAGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00

droPer1

TTCCTGGAA------------------------------------------GCCATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTA-TATGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG---------------------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	160.00	3.00	3.00	52.00	73.00	29.00
.............................................................................GAGTTCCACCATGCAAGTTTT..........................................................................................................	21	1	53.00	2.00	0.00	19.00	32.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCG................................................................	21	1	16.00	0.00	0.00	8.00	8.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	15.00	0.00	0.00	8.00	5.00	2.00
........................................................................................................................AACTTGACACGTTGAGCTCG................................................................	20	1	12.00	1.00	0.00	2.00	9.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTC.................................................................	20	1	9.00	0.00	0.00	3.00	6.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	7.00	0.00	0.00	2.00	5.00	0.00
.............................................................................GAGTTCCACCATGCAAGTTT...........................................................................................................	20	1	7.00	2.00	0.00	2.00	3.00	0.00
............................................................................CGAGTTCCACCATGCAAGTTTT..........................................................................................................	22	1	7.00	0.00	0.00	3.00	4.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTCGT...............................................................	23	1	7.00	1.00	0.00	3.00	3.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTG..............................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
........................................................................................................................AACTTGACACGTTGCGCTCGT...............................................................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTCG................................................................	22	1	2.00	0.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTC.................................................................	19	1	2.00	0.00	0.00	0.00	2.00	0.00
.............................................................................GAGTTCCACCATGCAAGT.............................................................................................................	18	1	2.00	0.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTTGACACGCTGAGCTCGT...............................................................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGG...............................................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................................................................................AAACTTGACACGTTGAGCACA................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACGCGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................................................AATCTTGACACGTTGAGCTCG................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTAAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AATTTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGTGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................GAGTTCCACCATGCAAGCTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................GAGTTCCACCATCCACGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................GAGGTCCACCATGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................CAGGTCCACCATGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACxTCACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGACCTCTTG..............................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AAATTGAAACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACAAGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGxxACGTTGAGCTCGT...............................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTTGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACCTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGGTGAGCTCG................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
........A------------------------------------------GCCATCTAGGAGCTGGT........................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCT..................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................GAGTTCCACCCTGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AAATTGACACGTTAAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGCGCT..................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................GAGCTCCATCATGCAAGTTT...........................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AAATTGACACGTCGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGATACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................GAGCTCCACCATGCAAGATTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTCACACGTTGAGTTCG................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGCACTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................GAGTTCCACAATGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AGCTTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACCCGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTC.................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTCGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

droWil1

TTTAT--------------------------------------------------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCATA--TTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGACAG--AA---------------------------------CGAACA---------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	1440.00	17.00	149.00	226.00	1048.00
............................................................................TGAGTTCCACTAAGCAAGTTTT..........................................................................................................	22	1	115.00	0.00	3.00	108.00	4.00
........................................................................................................................AACTTGACACGTTGAGCTCGG...............................................................	21	1	85.00	0.00	0.00	0.00	85.00
.............................................................................GAGTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	62.00	0.00	12.00	49.00	1.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	57.00	3.00	0.00	6.00	48.00
........................................................................................................................AACTTGACACGTTGAGCTCG................................................................	20	1	48.00	0.00	0.00	2.00	46.00
..........................................................................................................................CTTGACACGTTGAGCTCGTCT.............................................................	21	1	31.00	0.00	0.00	0.00	31.00
.......................................................................................................................AAACTTGACACGTTGAGCTCG................................................................	21	1	25.00	0.00	0.00	0.00	25.00
........................................................................................................................AACTTGACACGTTGAGCTCGC...............................................................	21	1	23.00	0.00	1.00	0.00	22.00
............................................................................TGAGTTCCACTAAGCAAGTTT...........................................................................................................	21	1	22.00	0.00	1.00	21.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	21.00	2.00	10.00	5.00	4.00
...........................................................................ATGAGTTCCACTAAGCAAGTTT...........................................................................................................	22	1	21.00	0.00	0.00	21.00	0.00
...........................................................................ATGAGTTCCACTAAGCAAGTT............................................................................................................	21	1	14.00	0.00	0.00	14.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTCT.............................................................	23	1	9.00	0.00	0.00	0.00	9.00
........................................................................................................................AACTTGACACGTTGATCTCGT...............................................................	21	1	8.00	0.00	0.00	1.00	7.00
.............................................................................GAGTTCCACTAAGCAAGTTT...........................................................................................................	20	1	7.00	0.00	1.00	6.00	0.00
............................................................................TGAGTTCCACTAAGCAAGTT............................................................................................................	20	1	4.00	0.00	0.00	4.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTCG................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................................AAACTTGACACGTTGAGCTC.................................................................	20	1	4.00	0.00	0.00	0.00	4.00
........................................................................................................................AACTTGACACGTTGGGCTCGT...............................................................	21	1	4.00	0.00	0.00	1.00	3.00
..........................................................................................................................CTTGACACGTTGAGCTCGTCC.............................................................	21	1	4.00	0.00	0.00	0.00	4.00
............................................................................TGAGTTCCACTAAGCAAGTTTTT.........................................................................................................	23	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGG...............................................................	22	1	3.00	0.00	0.00	0.00	3.00
..............................................................................AGTTCCACTAAGCAAGTTTT..........................................................................................................	20	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGC...............................................................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................AGCTTGACACGTTGAGCTCGT...............................................................	21	1	3.00	0.00	0.00	1.00	2.00
...........................................................................ATGAGTTCCACTAAGCAAGTTTT..........................................................................................................	23	1	3.00	0.00	0.00	3.00	0.00
........................................................................................................................AACTTGACACGTAGAGCTCGT...............................................................	21	1	3.00	0.00	0.00	0.00	3.00
............................................................................TGAGTTCCACTAAGCACGTTTT..........................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00
..........................................................................................................................GTTGACACGTTGAGCTCGT...............................................................	19	1	2.00	0.00	0.00	0.00	2.00
........................................................................................................................AACTTGACACGTTGAGGTCGT...............................................................	21	1	2.00	0.00	0.00	1.00	1.00
........................................................................................................................AACTTGACACGTTGAGCCCGT...............................................................	21	1	2.00	0.00	0.00	1.00	1.00
........................................................................................................................TACTTGACACGTTGAGCTCGT...............................................................	21	1	2.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTTxACACGTTGAGCTCGT...............................................................	20	1	2.00	0.00	0.00	0.00	2.00
............................................................................TGAGTTCCACTAAGCAAGTTTTG.........................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTTGGCACGTTGAGCTCGT...............................................................	21	1	2.00	0.00	0.00	0.00	2.00
........................................................................................................................AACTTGACACATTGAGCTCGT...............................................................	21	1	2.00	0.00	1.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGACCTCGT...............................................................	21	1	2.00	0.00	0.00	0.00	2.00
........................................................................................................................AACTTGACGCGTTGAGCTCGT...............................................................	21	1	2.00	0.00	1.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCTC.................................................................	19	1	2.00	0.00	0.00	0.00	2.00
............................................................................TGAGTTCCACTAAGCAATTTTT..........................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTTGACACGTCGAGCTCG................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................AAACTTGGCACGTTGAGCTCGT...............................................................	22	1	1.00	0.00	0.00	0.00	1.00
............................................................................TGAGTTCCACTAAGCAAG..............................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
............................................................................TGAGTTCAACTAAGCAAGTTT...........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
............................................................................TGATTTCCACTAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................................................................................TTGACACGTTGAGCCCGT...............................................................	18	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACAAGTTGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCTT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGTTGAACTCGT...............................................................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCGCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AAGTTCCACTAAGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGGCACGTTGAGCTCGG...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................................TGAGTTCCACTAAGCAAGTTTTA.........................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................GGGCATA--TTTCAAAAACAAA....................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................AAACTTGACACGTTGATCTCGT...............................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................AAACTTGACACGATGAGCTCGT...............................................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................................................TGAGTTCCGCTAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGATGAGCTCG................................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTCGACACGTTGAGCTCGTT..............................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................................CTTGACACGTTGAGCTCGTCG.............................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACATGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
..............................................................TCCTGTCCTACGCATGAGTTCC........................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................................................TGAGTTCCCCTAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................................................TGAGTTCCAATAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................................................CGAGTTCCACTAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTGGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTTACACGTTGAGCTCGG...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................................TGAGTTCCACTAATCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGAAACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
.............................................................................GAGTTCCACTAAGCAAGTTTTT.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................................................TGAGTTTCACTAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGGTGAGCTCG................................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGGTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTTACACGTTGAGCT..................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.........................................................................................................................ACTTGACACGTTGAGCTCGTCC.............................................................	22	1	1.00	0.00	0.00	0.00	1.00
.........................................................................................................................ACTTGACACGTTGAGCTCGTCT.............................................................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGATACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
...........................................................................ACGAGTTCCACTAAGCAAGTTTT..........................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
............................................................................TGAGTTCCACTAAGCAAATTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................................................TTAGTTCCACTAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTAACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................AAACTTGACACGTTGAGCTGG................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................GAGTTCCACTACGCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTCG.............................................................	23	1	1.00	0.00	0.00	0.00	1.00
...........................................................................ATGAGTTCCACTAAGCAAATTTT..........................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACGTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................................TGAGCTCCACTAAGCAAGTTT...........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................................................TGAGCTCGTCTGTGTGACAG--AA---------------------------------C..............	23	1	1.00	0.00	0.00	0.00	1.00
............................................................................AGAGTTCCACTAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTCGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGATGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................................................................CTGAGTTCCACTAAGCAAGTTTT..........................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGATCTCGG...............................................................	21	1	1.00	0.00	0.00	0.00	1.00

droVir3

CTTTCAAGA------------------------------------------GCAGCTCGCGCTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGGA--TTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGGCGG--CAT-----------------------T---CAAGCCAGAAG----AGCAC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	122.00	7.00	31.00	0.00	6.00	78.00
..............................................................................AGTTCCACTAATCAAGTTTTG.........................................................................................................	21	1	64.00	2.00	59.00	1.00	0.00	2.00
..............................................................................AGTTCCACTAATCAAGTTTTGA........................................................................................................	22	1	43.00	1.00	42.00	0.00	0.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTCG................................................................	22	1	29.00	2.00	8.00	0.00	0.00	19.00
.......................................................................................................................AAACTTGACACGTTGAGCTCG................................................................	21	1	22.00	0.00	3.00	0.00	0.00	19.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	12.00	3.00	4.00	1.00	0.00	4.00
........................................................................................................................AACTTGACACGTTGAGCTCGG...............................................................	21	1	10.00	0.00	0.00	0.00	0.00	10.00
........................................................................................................................AACTTGACACGTTGAGCTCG................................................................	20	1	8.00	0.00	4.00	0.00	2.00	2.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	6.00	0.00	2.00	0.00	0.00	4.00
..............................................................................AGTTCCACTAATCAAGTTTT..........................................................................................................	20	1	6.00	0.00	6.00	0.00	0.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTC.................................................................	21	1	5.00	0.00	2.00	0.00	1.00	2.00
........................................................................................................................AACTTGACACGTTGAGCTCGC...............................................................	21	1	5.00	0.00	1.00	0.00	0.00	4.00
.............................................................................GAGTTCCACTAATCAAGTTTT..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
........................................................................................................................AGCTTGACACGTTGAGCTCGT...............................................................	21	1	3.00	0.00	1.00	0.00	0.00	2.00
..............................................................................AGTTCCACTAATCAAGTTT...........................................................................................................	19	1	2.00	0.00	2.00	0.00	0.00	0.00
..............................................................................AGTTCCACTAATCAAGTTTTGT........................................................................................................	22	1	2.00	0.00	2.00	0.00	0.00	0.00
...............................................................................................................AAAGTCGAAAACTTGACACGTTGAGCT..................................................................	27	1	2.00	0.00	0.00	0.00	0.00	2.00
..................................................................................................GAGCGTA--TTCGAAAGTCGAA....................................................................................	20	1	2.00	0.00	0.00	0.00	0.00	2.00
..............................................................................AGTTCCACTAATCAAGTTTTT.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................GAGTTCCACTAATCAAGTT............................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGGTCCACTAATCATGTTTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGCTCCACTAATCAAGTTTT..........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACCCGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
..............................................................................AGTTCCACTAATCAAGTCTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................GAGTTCCACTAATCAAGTTT...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................................................................AAACTTGACACGTTGCGCCCGT...............................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGATCCACTAATCAAGTTTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGTTTAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................................................AGTTCCACTAATAAAGTTTCG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTTT.............................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGTTCGACTAATCAAGTTTT..........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................................................................................CTTGACACGTTGAGCTCGTTT.............................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
..............................................................................AGTTACACTAATCAAGTTTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................................................................AAACTTGACACGTTTAGCT..................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................................................................AAACTTGACACGTTGACCTCGC...............................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................GAGTTCCACTAATCAAATTTT..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................................................................................................................ACTTGACACGTTGAGCTCGTC..............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCGCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGGTCCACTAATCAAGTTTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGTCGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGCGATCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTT.................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
..............................................................................AGTTCCACTAATCCCGTTTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGTTCCACTAATTAAGTTTTGAG.......................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGTTCCACTAATCAGGTTTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AGCTTGACACGTTGACCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................GAGCGGA--TTCGAAAGTCG......................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................................CGAGTTCCACTAATCAAGTTT...........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................GAGTTGCCCTAATCAAGTTT...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGTTCCACTAAGCAAGATTTGA........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................CACTTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGTCCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCC..................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................................................................................AAACTTGACACGTTGAGCTC.................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTGAGCTC.................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................................AACTTGACACGTTAGGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCGTC..............................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGTT..............................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGTTCCGCTAATCAAGTTTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................................................GA--TTCGAAAGTCGAAAACTTGA.............................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
..............................................................................AGTTCCACTAAGCAAGATTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTCT................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGTTCCACTAATCACGTTTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGATCCACTAATCAAGTTTTGA........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................................................................................GAAAACTTGACACGTTGAGCTCG................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGTTCCACAAATCAAGATTTGA........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................................................................................................CGAAAACTTGACACGTTGAGC...................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGATGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................................................................AGACTTGACACGTTGAGCTCG................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGTTCCACTGATCATGTTTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................AGTTCCACTAATCACGTTTTGA........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00

droMoj3

CTGGGTAAG---------TTGCTCAAGAGCCCAATCCTTATCCATACCATATCC--ACATTTGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAG--TG--TTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGGC----ACA-----------------------AGTTCAA--CAAAAGCAACAGATC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	130.00	40.00	50.00	36.00	4.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	19.00	16.00	1.00	2.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	7.00	2.00	3.00	2.00	0.00
.....................................................................................................................AAAAACTTGACACGTTGAGCTCG................................................................	23	1	6.00	1.00	5.00	0.00	0.00
..............................................................................AGTTCCACTAATCAAGTTTTGA........................................................................................................	22	1	3.00	1.00	2.00	0.00	0.00
.....................................................................................................................AAAAACTTGACACGTTGAGCTCGT...............................................................	24	1	3.00	2.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCG................................................................	20	1	3.00	1.00	0.00	2.00	0.00
..............................................................................AGTTCCACTAATCAAGTTTTG.........................................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
.............................................................................GAGTTCCACTAATCAAGTTTT..........................................................................................................	21	1	3.00	0.00	0.00	2.00	1.00
.....................................................................................................................AAAAACTTGACACGTTGAGCT..................................................................	21	1	2.00	0.00	1.00	1.00	0.00
..............................................................................AGTTCCACTAATCAAGTTT...........................................................................................................	19	1	2.00	0.00	1.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGATCGT...............................................................	21	1	2.00	1.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGCGCTCGT...............................................................	21	1	2.00	0.00	0.00	2.00	0.00
........................................................................................................................AACTTGACGCGTTGAGCTCGTT..............................................................	22	1	1.00	1.00	0.00	0.00	0.00
.............................................................................GAGTTCCACTAATCAAGTTT...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTAACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
..............................................................................AGTTCCACTAATCAATTTTTG.........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.............................................................................GAGTTCCACTCATCAAGTTTT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.............................................................................GAGTTCCACTAATCCAATTTT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
............................................................................CGAGTTCCACTAAGCAAGTTTT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................AAAAACTTGACACGTTGATC...................................................................	20	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AAGGTGACACGTTGAGCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................................................................GCGAGTTCCACTAATCAAG..............................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..............................................................................AGTTCCACTAAGCAAGTTGT..........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................................AAAACTTGACACGTTGAGCTCGTT..............................................................	24	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCG................................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGTTGAGCTCTT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGAACTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................AAAAACTTGACACGTTGAGCTC.................................................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AGGTTGACACGTTGAGCTCGTC..............................................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................AACTTGACACGGTGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................AACTTGACGCGTTGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00
..............................................................................AGTTCCACTAATCAAGTTTT..........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................AAAAACTTGACACGTTGAG....................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGTT..............................................................	23	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGTTGATCTCGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................CAACTTGACACGTTGAGCTCGT...............................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................AACTTGACACGCTGAGCTCGT...............................................................	21	1	1.00	0.00	1.00	0.00	0.00

droGri2

TTCGGTTTG---------TTCTTTTACAGCAG-------------------TGCATCCGGGTGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAG--CGTA-TTTGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTTGCGGAAATCAACTTACTCAAATCTGCTATAAGTTTAT--TAAAGAAAAAAAATA	Size	Hit Count	Total Norm	V109 Male body
.....................................................................................................................AAAAACTTGACACGTTGAGCTCG................................................................	23	1	30.00	30.00
........................................................................................................................AACTTGACACGTTGAGCTCGT...............................................................	21	1	6.00	6.00
........................................................................................................................AACTTGACACGTTGAGCTCGTT..............................................................	22	1	4.00	4.00
.......................................................................................................................AAACTTGACACGTTGAGCTCGT...............................................................	22	1	3.00	3.00
.....................................................................................................................AAAAACTTGACACGTTGAGCT..................................................................	21	1	2.00	2.00
.....................................................................................................................AAAAACTTGACACGTTGAGCTCGT...............................................................	24	1	1.00	1.00
.....................................................................................................................AAAAACTTGACACGTTGGGCTCG................................................................	23	1	1.00	1.00
.....................................................................................................................AAAAACTTGACGCGTTGAGCTCG................................................................	23	1	1.00	1.00
.....................................................................................................................AAAAACTTGACACGTTGAGCTTG................................................................	23	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image