dme-mir-962- Best orthologs

dme-mir-962	chr2L:5641298-5641389 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 5641315-5641339
   star strand at position 5641352-5641373
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2L:5641283-5641404 +		1	GAATTC---AA--CTACT---T---C--GAT-GGGGC-ACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTA------------T----TCAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTG------------------------------------------ATA-----G---------------------------------TA
droSim1	chr2L:5434368-5434488 +	LASTZ	1	GAATCT-ACAA--CTACC---T---C--GAT-GGGGC-GCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTA------------T----TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CC--TGCAACAGTG------------------------------------------ATA-----------------------------------------
droSec1	super_5:3719023-3719143 +	LASTZ	1	GAATCT-ACAA--CTACC---T---C--GAT-GGGGC-ATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTA------------T----TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTG------------------------------------------GTA-----------------------------------------
droYak2	chr2L:13551914-13552032 -	LASTZ	1	GAATCC---AA--CCAAC---T---T--CAT-GGGGC-ACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTA------------T----TCAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------
droEre2	scaffold_4929:5729744-5729862 +	LASTZ	1	GAATCC---CA--GTACC---T---C--CTT-GGGGC-ACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTA------------T----TCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTG------------------------------------------ACA-----------------------------------------
droEug1	scf7180000409063:317598-317719 +	LASTZ	4	AAACCC---AA--CTTCC---T---C--GCC-GGGGC-ACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGCGT------------T----CTAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACCGGG------------------------------------------ATA-----C---------------------------------CG
droBia1	scf7180000302422:3830833-3830950 +	LASTZ	4	AGGCC----AA--CCAAC---C---C--G-T-CGGGC-ACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTCTA------------T----TCAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC-CA--TGCATCAGTG------------------------------------------ATA-----------------------------------------
droTak1	scf7180000415871:385570-385688 +	LASTZ	4	AAACCC---AA--CCAAC---T---C--GAC-GGGGC-ACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTCAA------------T----TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------
droEle1	scf7180000490753:30468-30581 +	LASTZ	4	GAACCC---AA--TTACC---T---C------GGGGC-ACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CACTA------------C----TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC--CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------
droRho1	scf7180000778253:33735-33851 -	LASTZ	4	GAGTTC---AA--CTACC---T---C--CAC-GGGGC-ACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATACTA-----------------CTGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC--CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------
droFic1	scf7180000453932:197438-197556 -	LASTZ	4	GAAGCC---AT--C--CC---C---C--CAC-TGGGC-AGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTACA------------T----CCAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACAA-G------------------------------------------ATA-----G---------------------------------TG
droKik1	scf7180000302389:430827-430949 -	LASTZ	4	TCCTGG---AA--CTCCC---T---G--CCC-AAGGC-ACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTCTAA--G--------C----TCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACAGTG------------------------------------------ATA-----A---------------------------------TG
droAna3	scaffold_12916:11085088-11085210 +	LASTZ	1	GGGCCC---AA--CCACC---T---G--GCCGAGGGC-ACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCA------------A----ATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CA--AGCAACAATG------------------------------------------ATA-----A---------------------------------CA
droBip1	scf7180000396572:742837-742959 +	LASTZ	4	GGGCCC---AA--CCACC---T---G--GTCGGGGGC-ACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTCCA------------A----ATAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT-CA--AGCAACCATG------------------------------------------ATA-----A---------------------------------TA
dp4	chr4_group4:3182204-3182349 -	LASTZ	1	GAGTGCCACAA--ATGCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT-----------T----CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGC-CAACAGCAACAGCT--------------------ACAAAACGAGTAACGAGGAGAGATA-----------------------------------------
droPer1	super_10:2201135-2201280 -	LASTZ	1	GAGTGCCACAA--ATGCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT-----------T----CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGC-CAACAGCAACAGCT--------------------ACAAAACGAGTAACGAGGAGAGATA-----------------------------------------
droWil1	scaffold_180708:8625857-8626006 -	LASTZ	1	GGATAC---ACGTTTTCTATTT---A--ATA-AGGAC-CCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATTTG--TAACAAT-TGT----TAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACA--TGCAACAACA-------------------TATAAT-------ACAATCAAACAAA-----------------------------------------
droVir3	scaffold_12963:3615418-3615613 +	LASTZ	1	ACACAC---AC--ACATA---A---G--AA--AGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT-TTACATATG--------G----TGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AA--TGCAACGGAACCATTTTGGAGGAACATCATAT-TT-------AGAATAAGCCACATGATAGGCAGCACATTTAGCATTTGAATGCCGGACTGCTCA
droMoj3	scaffold_6500:14018360-14018470 +	LASTZ	1	GT------------------------------AGAGC-GCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCATA--TAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AA--TGCAGCA-----------------------------------------------------------------------------------------
droGri2	scaffold_15252:3147228-3147335 +	LASTZ	1	TCATA-----A--CACAC---T---C----A-AGAGC-TCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA-----------------AAAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AA--TGCAACGG----------------------------------------------------------------------------------------

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	GAATTC---AA--CTACT---T---C--GAT-GGGGC-ACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTA------------T----TCAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTG------------------------------------------ATA-----G---------------------------------TA
droSim1	GAATCT-ACAA--CTACC---T---C--GAT-GGGGC-GCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTA------------T----TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CC--TGCAACAGTG------------------------------------------ATA-----------------------------------------
droSec1	GAATCT-ACAA--CTACC---T---C--GAT-GGGGC-ATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTA------------T----TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTG------------------------------------------GTA-----------------------------------------
droYak2	GAATCC---AA--CCAAC---T---T--CAT-GGGGC-ACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTA------------T----TCAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------
droEre2	GAATCC---CA--GTACC---T---C--CTT-GGGGC-ACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTA------------T----TCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTG------------------------------------------ACA-----------------------------------------
droEug1	AAACCC---AA--CTTCC---T---C--GCC-GGGGC-ACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGCGT------------T----CTAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACCGGG------------------------------------------ATA-----C---------------------------------CG
droBia1	AGGCC----AA--CCAAC---C---C--G-T-CGGGC-ACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTCTA------------T----TCAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC-CA--TGCATCAGTG------------------------------------------ATA-----------------------------------------
droTak1	AAACCC---AA--CCAAC---T---C--GAC-GGGGC-ACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTCAA------------T----TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------
droEle1	GAACCC---AA--TTACC---T---C------GGGGC-ACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CACTA------------C----TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC--CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------
droRho1	GAGTTC---AA--CTACC---T---C--CAC-GGGGC-ACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATACTA-----------------CTGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC--CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------
droFic1	GAAGCC---AT--C--CC---C---C--CAC-TGGGC-AGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTACA------------T----CCAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACAA-G------------------------------------------ATA-----G---------------------------------TG
droKik1	TCCTGG---AA--CTCCC---T---G--CCC-AAGGC-ACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTCTAA--G--------C----TCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACAGTG------------------------------------------ATA-----A---------------------------------TG
droAna3	GGGCCC---AA--CCACC---T---G--GCCGAGGGC-ACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCA------------A----ATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CA--AGCAACAATG------------------------------------------ATA-----A---------------------------------CA
droBip1	GGGCCC---AA--CCACC---T---G--GTCGGGGGC-ACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTCCA------------A----ATAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT-CA--AGCAACCATG------------------------------------------ATA-----A---------------------------------TA
dp4	GAGTGCCACAA--ATGCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT-----------T----CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGC-CAACAGCAACAGCT--------------------ACAAAACGAGTAACGAGGAGAGATA-----------------------------------------
droPer1	GAGTGCCACAA--ATGCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT-----------T----CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGC-CAACAGCAACAGCT--------------------ACAAAACGAGTAACGAGGAGAGATA-----------------------------------------
droWil1	GGATAC---ACGTTTTCTATTT---A--ATA-AGGAC-CCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATTTG--TAACAAT-TGT----TAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACA--TGCAACAACA-------------------TATAAT-------ACAATCAAACAAA-----------------------------------------
droVir3	ACACAC---AC--ACATA---A---G--AA--AGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT-TTACATATG--------G----TGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AA--TGCAACGGAACCATTTTGGAGGAACATCATAT-TT-------AGAATAAGCCACATGATAGGCAGCACATTTAGCATTTGAATGCCGGACTGCTCA
droMoj3	GT------------------------------AGAGC-GCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCATA--TAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AA--TGCAGCA-----------------------------------------------------------------------------------------
droGri2	TCATA-----A--CACAC---T---C----A-AGAGC-TCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA-----------------AAAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AA--TGCAACGG----------------------------------------------------------------------------------------

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

GAATCT-ACAA--CTACC---T---C--GAT-GGGGC-GCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTA------------T----TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CC--TGCAACAGTG------------------------------------------ATA-----------------------------------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...............................................ATAAGGTAGAGAAATTGATGTTGTC....................................................................................................................................................................	25	1	268.00	6.00	0.00	243.00	19.00
...............................................ATAAGGTAGAGAAATTGATGTTGTCT...................................................................................................................................................................	26	1	55.00	1.00	0.00	52.00	2.00
...............................................ATAAGGTAGAGAAATTGATGTTGT.....................................................................................................................................................................	24	1	40.00	0.00	0.00	40.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTT.......................................................................................................................................................................	22	1	26.00	3.00	1.00	22.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTTGTCC...................................................................................................................................................................	26	1	6.00	0.00	0.00	5.00	1.00
...............................................ATAAGGTAGAGAAATTGATG.........................................................................................................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
.....................................................................................................CTTCAGTTTCATTGCCTTTCA..................................................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTTGC.....................................................................................................................................................................	24	1	2.00	0.00	0.00	2.00	0.00
...............................................ATAAGGGAGAGAAATTGATGTTGTC....................................................................................................................................................................	25	1	2.00	0.00	0.00	2.00	0.00
...............................................ATAAGGTAGAGAAATTGATGT........................................................................................................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTTG......................................................................................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTTGTCG...................................................................................................................................................................	26	1	2.00	0.00	0.00	2.00	0.00
................................................TAAGGTAGAGAAATTGATGTTGTCT...................................................................................................................................................................	25	1	2.00	0.00	0.00	2.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTTGG.....................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAAGGAAGAGAAATTGATGTTGTC....................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAAGGGAGAGAAATTGATGTTGTCT...................................................................................................................................................................	26	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................ACTTCAGTTTCATTGCCTTTCA..................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGATxTTGTCC...................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAATGTAGAGAAATTGATGTTGT.....................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGATATTGATGTTGTT....................................................................................................................................................................	25	1	1.00	1.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTTGTT....................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGCTATTGATGTT.......................................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
............................................................ATGGATGTTGTCTACGCT..............................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................................CTTCAGTTTCATTGCCTTTCAA.................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAATGTAGAGAAATTGATGTTGTC....................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAACGTAGAGAAATTGATGTTGTC....................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGGGAAATTGATGTTGT.....................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTCGTCT...................................................................................................................................................................	26	1	1.00	0.00	0.00	1.00	0.00
................................................TAAGGTAGAGAAATTGATGTTGTCC...................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAAGGAAGAGAAGTTGATGTTGTC....................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTTGTCTT..................................................................................................................................................................	27	1	1.00	0.00	0.00	1.00	0.00
................................................................................................TCAGACTTCAGTTTCATTGCCT......................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00

droSec1

GAATCT-ACAA--CTACC---T---C--GAT-GGGGC-ATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTA------------T----TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTG------------------------------------------GTA-----------------------------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...............................................ATAAGGTAGAGAAATTGATGTT.......................................................................................................................................................................	22	1	812.00	649.00	157.00	6.00
...............................................ATAAGGTAGAGAAATTGATGTTGT.....................................................................................................................................................................	24	1	762.00	697.00	61.00	4.00
...............................................ATAAGGTAGAGAAATTGATGTTGTC....................................................................................................................................................................	25	1	751.00	542.00	200.00	9.00
...............................................ATAAGGTAGAGAAATTGATGTTGTCT...................................................................................................................................................................	26	1	486.00	352.00	130.00	4.00
...............................................ATAAGGTAGAGAAATTGATGTTG......................................................................................................................................................................	23	1	389.00	376.00	10.00	3.00
...............................................ATAAGGTAGAGAAATTGATGT........................................................................................................................................................................	21	1	26.00	22.00	4.00	0.00
...............................................ATAAGGTAGAGAAATTGACGTTGT.....................................................................................................................................................................	24	1	11.00	11.00	0.00	0.00
................................................TAAGGTAGAGAAATTGATGTTGTCT...................................................................................................................................................................	25	1	8.00	6.00	2.00	0.00
...............................................ATAAGGTAGAGAAATTGATG.........................................................................................................................................................................	20	1	7.00	7.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGAAGTTGT.....................................................................................................................................................................	24	1	6.00	6.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTTT......................................................................................................................................................................	23	1	6.00	6.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTTGTT....................................................................................................................................................................	25	1	6.00	5.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGACGTTGTC....................................................................................................................................................................	25	1	5.00	5.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGACGTTG......................................................................................................................................................................	23	1	5.00	5.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGACGTTGTCT...................................................................................................................................................................	26	1	5.00	5.00	0.00	0.00
...............................................ATAAGGGAGAGAAATTGATGTTGTC....................................................................................................................................................................	25	1	5.00	4.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGAAGTTGTC....................................................................................................................................................................	25	1	5.00	5.00	0.00	0.00
................................................TAAGGTAGAGAAATTGATGTTGTC....................................................................................................................................................................	24	1	4.00	4.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGACGTT.......................................................................................................................................................................	22	1	4.00	4.00	0.00	0.00
................................................TAAGGTAGAGAAATTGATGTTGT.....................................................................................................................................................................	23	1	4.00	3.00	1.00	0.00
...............................................ATAAGGGAGAGAAATTGATGTT.......................................................................................................................................................................	22	1	4.00	3.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTTGTCTT..................................................................................................................................................................	27	1	4.00	2.00	2.00	0.00
...............................................ATAAGGCAGAGAAATTGATGTT.......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00
...............................................ATAAGGCAGAGAAATTGATGTTGTCT...................................................................................................................................................................	26	1	3.00	3.00	0.00	0.00
...............................................ATAAGGGAGAGAAATTGATGTTG......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGGTGTTGTC....................................................................................................................................................................	25	1	3.00	2.00	1.00	0.00
................................................TAAGGTAGAGAAATTGATGTTG......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGAGGTTGT.....................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGAAGTTG......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00
...............................................ATAAGGCAGAGAAATTGATGTTGT.....................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00
...............................................ATAAGGGAGAGAAATTGATGTTGT.....................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00

droYak2

GAATCC---AA--CCAAC---T---T--CAT-GGGGC-ACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTA------------T----TCAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................ATAAGGTAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1206.00	1.00	1.00	1158.00	16.00	30.00
...............................................ATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	615.00	0.00	0.00	600.00	2.00	13.00
...............................................ATAAGGTAGAGAAATTGTTGT........................................................................................................................................................................	21	1	110.00	0.00	0.00	107.00	2.00	1.00
................................................TAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	22	1	43.00	0.00	0.00	43.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTG.........................................................................................................................................................................	20	1	21.00	0.00	0.00	20.00	1.00	0.00
...............................................ATAAGGGAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	10.00	0.00	0.00	8.00	1.00	1.00
...............................................ATAAGGCAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
...............................................ATAAGGTAGAGACATTGTTGTCT......................................................................................................................................................................	23	1	6.00	0.00	0.00	6.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGTTGTC.......................................................................................................................................................................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTTTTGTC.......................................................................................................................................................................	22	1	5.00	0.00	0.00	4.00	0.00	1.00
...............................................ATAAGGTAGAGAAATTGTTGTCC......................................................................................................................................................................	23	1	4.00	0.00	0.00	2.00	0.00	2.00
...............................................ATAAGGTAGAGAAAATGTTGTCT......................................................................................................................................................................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
...............................................ATAAGGTxxAGAAATTGTTGTC.......................................................................................................................................................................	20	1	3.00	0.00	0.00	3.00	0.00	0.00
...............................................ATAAGGAAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCA......................................................................................................................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
...............................................ATAAGGTAGAGACATTGTTGTC.......................................................................................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
...............................................ATAAGGGAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	3.00	0.00	0.00	2.00	0.00	1.00
...............................................ATAAGGTAGGGAAATTGTTGTC.......................................................................................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGCCT......................................................................................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00	0.00
...............................................ATAAGGTGGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
...............................................ATAAGGTAGAGAGATTGTTGTC.......................................................................................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTTTTGTCT......................................................................................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGCTGTCT......................................................................................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00	0.00
...............................................ATAAGGTCGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
...............................................ATAAGGTAGAGACATTGTTGAC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................TCATAAGGTAGAGAAATTGTTGTC.......................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAGTTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................ACAAGGTAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATGAGGAAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTT..........................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATTAGGTAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATCGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAACTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGGGATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..............................................TATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTATTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................AAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTCTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................ATAGGGTAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTTGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................TAAGGTAGAGAAATTGTTGTCTA.....................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................TAAGGTAGAGAAAATGTTGTCT......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGGTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGT...........................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGGAATTGTTGT........................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGGAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGCTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTT.....................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTGGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGAC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAGATTGTTGT........................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGGAATTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGCTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................TAAGGTAGAGCAATTGTTGTCT......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................CAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTTCT.....................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATCAGGTAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGACT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................CATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................TAAGGTAGAGAAATTGTTGCCT......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTATAGAAATTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAACTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................TAAGGTAGAGAAATTGTTCT........................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTCGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTATC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTxTTGTC.......................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTAGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................GTAAGGTAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATGTAGAGAAATTGTTGTC.......................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTATAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTT.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGTTAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................AGGTAGAGAAATTGTTGTC.......................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTACAGAAATTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTCTTGT........................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGCAATTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCG......................................................................................................................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................ATAAGGCAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTACAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................................................................CTTGCAATTTGTTTGGCC......................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................ATAAAGTAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGxAATTGTTGTC.......................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTCGAGACATTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGACAAATTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGCAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGTTGTCC......................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTCC....................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGATAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGTTG.........................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAATTTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTCTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGTTGT........................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

GAATCC---CA--GTACC---T---C--CTT-GGGGC-ACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTA------------T----TCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTG------------------------------------------ACA-----------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...............................................ATAAGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	767.00	3.00	35.00	0.00	729.00
...............................................ATAAGGTAGAAAAATTGTTGT........................................................................................................................................................................	21	1	52.00	0.00	1.00	0.00	51.00
...............................................ATAAGGTAGAAAAATTGTTGTCT......................................................................................................................................................................	23	1	35.00	0.00	4.00	0.00	31.00
...............................................ATAAGGTAGAAAAATTGTTG.........................................................................................................................................................................	20	1	10.00	0.00	1.00	0.00	9.00
...............................................ATAATGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
...............................................ATAAGGTAGAAAAATTTTTGTC.......................................................................................................................................................................	22	1	7.00	0.00	0.00	0.00	7.00
...............................................ATAAGGTATAAAAATTGTTGTC.......................................................................................................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
...............................................ATAAGGCAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	4.00	0.00	0.00	0.00	4.00
...............................................ATAAGGTAGxAAAATTGTTGTC.......................................................................................................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
...............................................ATAGGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................ATAAGGTAGAAAAATTGTTGTA.......................................................................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
................................................TAAGGTAGAAAAATTGTTGTCT......................................................................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................ATAAGTTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................GTAAGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................ATCAGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................ATAAGGTAGAAAAATTGTCGTC.......................................................................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................ATAAGGTAGAAAAGTTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAxAAAAATTGTTGTC.......................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................ATGAGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGAAAGATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGAAAAATCGTTG.........................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
...............................................ATACGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGAAAAATCGTTTTC.......................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
................................................AAAGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGxxGAAAAATTGTTGTC.......................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
................................................TAAGGTAGAAAAATTGTTGTCTT.....................................................................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................ATCAGGTAGACAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................ATAAGTTAGAAAAATTGTTGT........................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGAAAAATCGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGAAAAATTGTTGTCA......................................................................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGATAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGAAAAATTGCTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGAAAAATTATTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGTTAGAAAAATTGTTGTCT......................................................................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGAAAACTTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
................................................TAAGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGAAAAATTTTTGT........................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGAAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGGAGAAACATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGTAAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGCAGAAAAATTGTTGT........................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTACAAAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGAAAAATTxTTGTC.......................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTGGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGATAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAAGGTAGACAAACTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAATGTAGAAAAATTTTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................CTAAGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................ATAATGTAGAAAAATTGTTGT........................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00

droEug1

AAACCC---AA--CTTCC---T---C--GCC-GGGGC-ACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGCGT------------T----CTAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACCGGG------------------------------------------ATA-----C---------------------------------CG

Size

Hit Count

Total Norm

droBia1

AGGCC----AA--CCAAC---C---C--G-T-CGGGC-ACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTCTA------------T----TCAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC-CA--TGCATCAGTG------------------------------------------ATA-----------------------------------------

Size

Hit Count

Total Norm

droTak1

AAACCC---AA--CCAAC---T---C--GAC-GGGGC-ACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTCAA------------T----TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------

Size

Hit Count

Total Norm

droEle1

GAACCC---AA--TTACC---T---C------GGGGC-ACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CACTA------------C----TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC--CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------

Size

Hit Count

Total Norm

droRho1

GAGTTC---AA--CTACC---T---C--CAC-GGGGC-ACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATACTA-----------------CTGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC--CA--CGCAACAGTG------------------------------------------ATA-----------------------------------------

Size

Hit Count

Total Norm

droFic1

GAAGCC---AT--C--CC---C---C--CAC-TGGGC-AGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTACA------------T----CCAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACAA-G------------------------------------------ATA-----G---------------------------------TG

Size

Hit Count

Total Norm

droKik1

TCCTGG---AA--CTCCC---T---G--CCC-AAGGC-ACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTCTAA--G--------C----TCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CA--CGCAACAGTG------------------------------------------ATA-----A---------------------------------TG

Size

Hit Count

Total Norm

droAna3

GGGCCC---AA--CCACC---T---G--GCCGAGGGC-ACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCA------------A----ATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CA--AGCAACAATG------------------------------------------ATA-----A---------------------------------CA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............................................ATAAGGTAGAGAAAATAATGTCT......................................................................................................................................................................	23	1	1266.00	1118.00	122.00	26.00	0.00
...............................................ATAAGGTAGAGAAAATAATGTC.......................................................................................................................................................................	22	1	1211.00	1110.00	44.00	57.00	0.00
...............................................ATAAGGTAGAGAAAATAATGT........................................................................................................................................................................	21	1	166.00	152.00	6.00	8.00	0.00
...............................................ATAAGGTAGAGAAAATAATG.........................................................................................................................................................................	20	1	75.00	68.00	4.00	3.00	0.00
...............................................ATAAGGTAGAGAAAATAATGACT......................................................................................................................................................................	23	1	17.00	17.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATAATGAC.......................................................................................................................................................................	22	1	11.00	11.00	0.00	0.00	0.00
.....................................................................................................CATCAATTTCCCTAGCTTGCAT.................................................................................................................	22	1	11.00	8.00	3.00	0.00	0.00
...............................................ATAAGGTATAGAAAATAATGTC.......................................................................................................................................................................	22	1	10.00	9.00	1.00	0.00	0.00
...............................................ATAAGGGAGAGAAAATAATGTC.......................................................................................................................................................................	22	1	9.00	8.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAAATAATGCC.......................................................................................................................................................................	22	1	8.00	8.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGCAAATAATGTCT......................................................................................................................................................................	23	1	8.00	6.00	1.00	1.00	0.00
...............................................ATAAGGTAGAGGAAATAATGTC.......................................................................................................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAGAATAATGTC.......................................................................................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATAAT..........................................................................................................................................................................	19	1	6.00	4.00	2.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATAATGCCT......................................................................................................................................................................	23	1	6.00	6.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGTAAATAATGTC.......................................................................................................................................................................	22	1	6.00	5.00	1.00	0.00	0.00
...............................................ATAAGGTAGATAAAATAATGTCT......................................................................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAGATAATGTCT......................................................................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATAATGGC.......................................................................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
...............................................ATAAGGTAGATAAAATAATGTC.......................................................................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGCAAATAATGTC.......................................................................................................................................................................	22	1	5.00	4.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGGAAATAATGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAACAATGTC.......................................................................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAATGTAGAGAAAATAATGTCT......................................................................................................................................................................	23	1	4.00	3.00	1.00	0.00	0.00
...............................................ATAAGGAAGAGAAAATAATGTC.......................................................................................................................................................................	22	1	4.00	3.00	0.00	1.00	0.00
...............................................ATAAGGCAGAGAAAATAATGTC.......................................................................................................................................................................	22	1	4.00	3.00	0.00	1.00	0.00
...............................................ATAATGTAGAGAAAATAATGTC.......................................................................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATAATGTT.......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATAATGGCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATAATAATGTC.......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGTAAATAATGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAAGAATGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAAAAAATAATGTCT......................................................................................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAAAAAATGTC.......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATAATGTCA......................................................................................................................................................................	23	1	3.00	1.00	1.00	1.00	0.00
...............................................ATAAGGTATAGAAAATAATGTCT......................................................................................................................................................................	23	1	3.00	1.00	2.00	0.00	0.00
...............................................AGAAGGTAGAGAAAATAATGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAACATAATGTC.......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................ACAAGGTAGAGAAAATAATGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAACAATGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGGAGAGAAAATAATGTCT......................................................................................................................................................................	23	1	3.00	1.00	0.00	2.00	0.00
...............................................ATAAGGTAGAGAAAATAATTTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAGATAATGTC.......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00

droBip1

GGGCCC---AA--CCACC---T---G--GTCGGGGGC-ACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTCCA------------A----ATAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT-CA--AGCAACCATG------------------------------------------ATA-----A---------------------------------TA

Size

Hit Count

Total Norm

dp4

GAGTGCCACAA--ATGCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT-----------T----CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGC-CAACAGCAACAGCT--------------------ACAAAACGAGTAACGAGGAGAGATA-----------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..............................................TTTAAGGTACAGACTTTG---------AGTC...............................................................................................................................................................	22	1	217.00	201.00	0.00	8.00	8.00
..............................................TTTAAGGTACAGACTTTG---------AG.................................................................................................................................................................	20	1	32.00	26.00	0.00	2.00	4.00
..............................................TTTAAGGTACAGACTTTG---------AGTCT..............................................................................................................................................................	23	1	25.00	8.00	0.00	2.00	15.00
..............................................TTTAAGGTACAGACTTTG---------AGT................................................................................................................................................................	21	1	12.00	1.00	0.00	1.00	10.00
..............................................TTTAAGGTACAGACTTTG---------AGTT...............................................................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...............................................TTAAGGTACAGACTTTG---------AGTC...............................................................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
..............................................TTTAAGGTACATACTTTG---------AGTC...............................................................................................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
..............................................TTTAATGTACAGACTTTG---------AGTC...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................TAAGGTACAGACTTTT---------AGTC...............................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..............................................TTTAAGGTACAGACTTTG---------AGTTT..............................................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.AGTGCCACAA--ATGCCAAATGT....................................................................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------TGTCT..............................................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------AGCC...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTx---------AGTC...............................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------ATTT...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACxTTG---------AGTC...............................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................AGC-AGTCGTGTTTTAAGGTAC....................................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..............................................TTTAAGGTACAGACTTTG---------AGA................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..............................................TTTACGGTACAGACTTTG---------AGTC...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..............................................TTTAATGTACAGACTTTG---------AGTCT..............................................................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..............................................TTTAAGGTACAGACTTTG---------A..................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00

droPer1

GAGTGCCACAA--ATGCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT-----------T----CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGC-CAACAGCAACAGCT--------------------ACAAAACGAGTAACGAGGAGAGATA-----------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..............................................TTTAAGGTACAGACTTTG---------AGTC...............................................................................................................................................................	22	1	233.00	232.00	0.00	1.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------AGTCT..............................................................................................................................................................	23	1	37.00	37.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------AG.................................................................................................................................................................	20	1	32.00	32.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------AGT................................................................................................................................................................	21	1	14.00	14.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------AGTTT..............................................................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------AGTT...............................................................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------A..................................................................................................................................................................	19	1	5.00	5.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACGGACTTTG---------AGTC...............................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------GG.................................................................................................................................................................	20	1	2.00	2.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------AGTCA..............................................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACATACTTTG---------AGTC...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTCG---------AGTC...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACGTTG---------AGTCT..............................................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
...................CATGATGCxAAT-CGAGC-AGT...................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTAAAGACTTTG---------AGTC...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................................................................................................................................................................AACGAGTAACGxGGAGATA...........................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..............................................TTTAAGGTACAGACTTTG---------AGTA...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGAACAGACTTTG---------AG.................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGGCTTTG---------AGTC...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................TTAAGGTACAGGCTTTG---------AGTC...............................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................................TTTAAGGTACAGACTTTG---------AGAC...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................................CTTAAGGTACAGACTTTG---------AGTC...............................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00

droWil1

GGATAC---ACGTTTTCTATTT---A--ATA-AGGAC-CCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATTTG--TAACAAT-TGT----TAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACA--TGCAACAACA-------------------TATAAT-------ACAATCAAACAAA-----------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................ATAAGGTAGAGAAAATGTTGTCT......................................................................................................................................................................	23	10	186.50	176.20	1.40	6.30	2.60
...............................................ATAAGGTAGAGAAAATGTTGTC.......................................................................................................................................................................	22	10	123.10	117.90	1.30	2.70	1.20
...............................................ATAAGGTAGAGAAAATGTTGT........................................................................................................................................................................	21	15	10.60	10.40	0.00	0.20	0.00
...............................................ATAAGGTAGAGAAAATGTTGTCC......................................................................................................................................................................	23	10	5.20	4.30	0.00	0.20	0.70
...............................................ATAAGGTAGAGAAAATGTTG.........................................................................................................................................................................	20	15	2.60	2.60	0.00	0.00	0.00
................................................TAAGGTAGAGAAAATGTTGTCT......................................................................................................................................................................	22	10	3.10	2.80	0.10	0.20	0.00
...............................................ATAAGGTAGAGAAAATGTTGTCA......................................................................................................................................................................	23	10	2.20	2.20	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	12	1.83	1.83	0.00	0.00	0.00
...............................................ATAAGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	3	4.33	0.00	4.33	0.00	0.00
...........................................................................................T----TAAGACATCACTTTCACTAGC.......................................................................................................................	22	1	9.00	4.00	1.00	3.00	1.00
...............................................ATAAGGTAGAGAAAGTGTTGTCT......................................................................................................................................................................	23	12	0.67	0.50	0.00	0.17	0.00
...............................................ATAAGGTAGAGAAAATAATGTCT......................................................................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATAATGTC.......................................................................................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAGTGTTGTC.......................................................................................................................................................................	22	12	0.42	0.42	0.00	0.00	0.00
...............................................ATAAGGTAGAGACAATGTTGTCT......................................................................................................................................................................	23	10	0.50	0.50	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGTTGTT.......................................................................................................................................................................	22	15	0.33	0.33	0.00	0.00	0.00
...............................................ACAAGGTAGAGAAAATGTTGTC.......................................................................................................................................................................	22	10	0.50	0.40	0.00	0.10	0.00
...............................................ATAAGGTAGAGAAAATGTTGTCTT.....................................................................................................................................................................	24	10	0.50	0.50	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGTTGTCTA.....................................................................................................................................................................	24	10	0.40	0.30	0.00	0.10	0.00
...............................................GTAAGGTAGAGAAAATGTTGTCT......................................................................................................................................................................	23	10	0.40	0.30	0.00	0.00	0.10
...........................................................................................T----TAAGACATCACTTTCACTAG........................................................................................................................	21	12	0.33	0.25	0.00	0.00	0.08
...............................................ATAAGGTAGAGAAAATGTT..........................................................................................................................................................................	19	15	0.27	0.27	0.00	0.00	0.00
...............................................ATAAGTTAGAGAAAATGTTGTCT......................................................................................................................................................................	23	10	0.30	0.30	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGTTATC.......................................................................................................................................................................	22	10	0.30	0.20	0.00	0.10	0.00
...............................................ATAAGGTAGAGAAAATGTTGTCG......................................................................................................................................................................	23	10	0.30	0.20	0.00	0.00	0.10
...............................................ATAGGCTAGAGAAAATGT...........................................................................................................................................................................	18	10	0.30	0.00	0.30	0.00	0.00
...............................................ATAGGCTAGAGAAAATGTT..........................................................................................................................................................................	19	10	0.30	0.20	0.10	0.00	0.00
...............................................ATAAGGCAGAGAAAATGTTGTC.......................................................................................................................................................................	22	10	0.30	0.30	0.00	0.00	0.00
..............................................TATAAGGTAGAGAAAATGTTGTC.......................................................................................................................................................................	23	10	0.30	0.30	0.00	0.00	0.00
...............................................ATAAGGTAGAAAAAATGTTGTC.......................................................................................................................................................................	22	10	0.30	0.30	0.00	0.00	0.00
...............................................ATAAGGTAGAxAAAATGTTGTCT......................................................................................................................................................................	22	10	0.30	0.30	0.00	0.00	0.00
...............................................ATAACGTAGAGAAAATGTTGTCT......................................................................................................................................................................	23	10	0.30	0.30	0.00	0.00	0.00
..............................................TATAAGGTAGAGAAAATGTTGTCT......................................................................................................................................................................	24	10	0.30	0.20	0.00	0.10	0.00
...............................................ATAAGGTAGAGACAATGTTGT........................................................................................................................................................................	21	15	0.20	0.20	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGTTGCCT......................................................................................................................................................................	23	10	0.30	0.30	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAGTGTTGT........................................................................................................................................................................	21	15	0.20	0.20	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAACTGTTGTCT......................................................................................................................................................................	23	12	0.25	0.25	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGTTGTCTC.....................................................................................................................................................................	24	10	0.30	0.20	0.00	0.10	0.00
.....................................................................................................CATCACTTTCACTAGCTTTCA..................................................................................................................	21	1	3.00	2.00	0.00	1.00	0.00
...............................................ATAAGGGAGAGAAAATGTTGTC.......................................................................................................................................................................	22	10	0.30	0.30	0.00	0.00	0.00
...............................................ATAAGGTAGCGAAAATGTTGTCT......................................................................................................................................................................	23	10	0.30	0.30	0.00	0.00	0.00
...............................................ATAAGGTAGAGACAATGTTGTC.......................................................................................................................................................................	22	10	0.30	0.30	0.00	0.00	0.00
...............................................ATAAGGTAGAGAACATGTTGTCT......................................................................................................................................................................	23	12	0.25	0.25	0.00	0.00	0.00

droVir3

ACACAC---AC--ACATA---A---G--AA--AGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT-TTACATATG--------G----TGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AA--TGCAACGGAACCATTTTGGAGGAACATCATAT-TT-------AGAATAAGCCACATGATAGGCAGCACATTTAGCATTTGAATGCCGGACTGCTCA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............................................ATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	13949.00	13436.00	26.00	28.00	437.00	22.00
...............................................ATAAGGTAGAGAAATTGTTGTCC......................................................................................................................................................................	23	1	1385.00	1249.00	0.00	0.00	136.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTCC....................................................................................................................................................................	25	1	597.00	590.00	0.00	0.00	7.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	543.00	523.00	2.00	1.00	17.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTC.....................................................................................................................................................................	24	1	272.00	240.00	0.00	0.00	32.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGT........................................................................................................................................................................	21	1	149.00	142.00	3.00	2.00	2.00	0.00
................................................TAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	22	1	102.00	96.00	0.00	1.00	5.00	0.00
...............................................ATAAGGGAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	44.00	41.00	0.00	0.00	3.00	0.00
...............................................ATAAGGCAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	35.00	32.00	1.00	1.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGATGTCT......................................................................................................................................................................	23	1	35.00	35.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTTC....................................................................................................................................................................	25	1	32.00	31.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCCC.....................................................................................................................................................................	24	1	31.00	25.00	0.00	0.00	6.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCG......................................................................................................................................................................	23	1	27.00	1.00	0.00	0.00	25.00	1.00
...............................................ATAAGGAAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	26.00	26.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTATTGTCT......................................................................................................................................................................	23	1	25.00	23.00	0.00	0.00	2.00	0.00
...............................................ATAAGGTAGAGAAATTGCTGTCT......................................................................................................................................................................	23	1	24.00	24.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTxxAGAAATTGTTGTCT......................................................................................................................................................................	21	1	24.00	24.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAATGTTGTCT......................................................................................................................................................................	23	1	23.00	23.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTCCC-..................................................................................................................................................................	26	1	22.00	22.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGCCT......................................................................................................................................................................	23	1	18.00	18.00	0.00	0.00	0.00	0.00
................................................TAAGGTAGAGAAATTGTTGTCTA.....................................................................................................................................................................	23	1	18.00	18.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCA......................................................................................................................................................................	23	1	18.00	18.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAAAAATTGTTGTCT......................................................................................................................................................................	23	1	17.00	17.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAACTGTTGTCT......................................................................................................................................................................	23	1	16.00	16.00	0.00	0.00	0.00	0.00
...............................................GTAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	16.00	16.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGGGAAATTGTTGTCT......................................................................................................................................................................	23	1	16.00	15.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGTTG.........................................................................................................................................................................	20	1	15.00	14.00	1.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAGTTGTTGTCT......................................................................................................................................................................	23	1	14.00	14.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTTTCT......................................................................................................................................................................	23	1	12.00	11.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAACTTGTTGTCT......................................................................................................................................................................	23	1	12.00	11.00	1.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTC.........................................................................................................................................................................	20	1	11.00	10.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTCTTGTCT......................................................................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTGGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00	0.00
...............................................ACAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	10.00	9.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTTTTGTCT......................................................................................................................................................................	23	1	10.00	6.00	0.00	1.00	3.00	0.00
...............................................ATAAGGTAGAGAAATTGTCGTCT......................................................................................................................................................................	23	1	10.00	10.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTTC......................................................................................................................................................................	23	1	9.00	7.00	0.00	0.00	2.00	0.00
...............................................ATAAGTTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAGATTGTTGTCT......................................................................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTCTCT......................................................................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTATCT......................................................................................................................................................................	23	1	9.00	8.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGACT......................................................................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
..............................................CATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	24	1	9.00	8.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATCGTTGTCT......................................................................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTGT......................................................................................................................................................................	23	1	8.00	8.00	0.00	0.00	0.00	0.00
...............................................ATAAGGCAGAGAAATTGTTGTCC......................................................................................................................................................................	23	1	8.00	8.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAxAAATTGTTGTCT......................................................................................................................................................................	22	1	8.00	6.00	0.00	0.00	2.00	0.00
...............................................ATAATGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	7.00	4.00	1.00	0.00	2.00	0.00
...............................................ATAAGGTAGAGGAATTGTTGTCT......................................................................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
...............................................ATGAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTTT......................................................................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTCT....................................................................................................................................................................	25	1	7.00	7.00	0.00	0.00	0.00	0.00
...............................................ATAGGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	6.00	6.00	0.00	0.00	0.00	0.00
...............................................ATAAGGCAGAGAAATTGTTGTCTCC....................................................................................................................................................................	25	1	5.00	5.00	0.00	0.00	0.00	0.00
...............................................ATAAGGGAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGCAATTGTTGTCT......................................................................................................................................................................	23	1	5.00	4.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAAATxTTGTCT......................................................................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTCTCC......................................................................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
...............................................ATAAGCTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATAGTTGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCCCC....................................................................................................................................................................	25	1	4.00	2.00	0.00	0.00	2.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTTCC-..................................................................................................................................................................	26	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTATTGTCTCC....................................................................................................................................................................	25	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTAA......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTGGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTAT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATGGTTGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTAGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................ATAAGGAAGAGAAATTGTTGTCTCC....................................................................................................................................................................	25	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................TTAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................ATAACGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTA.....................................................................................................................................................................	24	1	4.00	3.00	0.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCCT.....................................................................................................................................................................	24	1	4.00	3.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGTCC.........................................................................................................................................................................	20	1	3.00	2.00	0.00	0.00	1.00	0.00
...............................................ATAAAGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGTGAAATTGTTGTCT......................................................................................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTCA....................................................................................................................................................................	25	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................CTAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAACTGTTGTCC......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGGTGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAAGTGTTGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAAGTAGAGAAATTGTTGTCC......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTT.......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTxTTGTCT......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTACAGAAATTGTTGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGGAGAGAAATTGTTGT........................................................................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGATAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGTTCT........................................................................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTCCT-..................................................................................................................................................................	26	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCTT.....................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGGCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGAAGAGAAATTGTTGTCC......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...............................................ATAAGGGAGAGAAATTGTTGTCC......................................................................................................................................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGCTGTCC......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00

droMoj3

GT------------------------------AGAGC-GCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCATA--TAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AA--TGCAGCA-----------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...............................................ATAAGGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	14832.00	14599.00	144.00	89.00	0.00
...............................................ATAAGGTAGAGATATTGTTGT........................................................................................................................................................................	21	1	1999.00	1866.00	87.00	46.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTC.......................................................................................................................................................................	22	1	1347.00	1321.00	17.00	9.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTC.....................................................................................................................................................................	24	1	859.00	847.00	9.00	3.00	0.00
................................................TAAGGTAGAGATATTGTTGTCT......................................................................................................................................................................	22	1	508.00	498.00	6.00	4.00	0.00
................................................TAAGGTAGAGATATTGTTGTCTTC....................................................................................................................................................................	24	1	298.00	298.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTTC....................................................................................................................................................................	25	1	129.00	129.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCC......................................................................................................................................................................	23	1	117.00	117.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTG.........................................................................................................................................................................	20	1	108.00	93.00	12.00	3.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTT.....................................................................................................................................................................	24	1	87.00	83.00	2.00	2.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTCC....................................................................................................................................................................	25	1	82.00	81.00	1.00	0.00	0.00
...............................................ATAAGGGAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	65.00	63.00	0.00	2.00	0.00
................................................TAAGGTAGAGATATTGTTGTCTT.....................................................................................................................................................................	23	1	63.00	61.00	2.00	0.00	0.00
................................................TAAGGTAGAGATATTGTTGTC.......................................................................................................................................................................	21	1	52.00	51.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTTTC...................................................................................................................................................................	26	1	34.00	34.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTCT....................................................................................................................................................................	25	1	31.00	30.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTTT....................................................................................................................................................................	25	1	31.00	29.00	2.00	0.00	0.00
................................................TAAGGTAGAGATATTGTTGTCTTT....................................................................................................................................................................	24	1	27.00	27.00	0.00	0.00	0.00
................................................TAAGGTAGAGATATTGTTGTCTTTC...................................................................................................................................................................	25	1	26.00	26.00	0.00	0.00	0.00
...............................................ATAAGGCAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	26.00	24.00	1.00	1.00	0.00
...............................................ATAAGGGAGAGATATTGTTGT........................................................................................................................................................................	21	1	18.00	18.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCA......................................................................................................................................................................	23	1	16.00	15.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTCA....................................................................................................................................................................	25	1	16.00	15.00	1.00	0.00	0.00
...............................................ATAAGGAAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	16.00	15.00	1.00	0.00	0.00
................................................TAAGGTAGAGATATTGTTGTCTTCC...................................................................................................................................................................	25	1	16.00	16.00	0.00	0.00	0.00
...............................................ATAAGGTxxAGATATTGTTGTCT......................................................................................................................................................................	21	1	16.00	16.00	0.00	0.00	0.00
...............................................ATAAGTTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	15.00	15.00	0.00	0.00	0.00
................................................TAAGGTAGAGATATTGTTGT........................................................................................................................................................................	20	1	14.00	12.00	2.00	0.00	0.00
................................................TAAGGTAGAGATATTGTTGTCTC.....................................................................................................................................................................	23	1	14.00	13.00	0.00	1.00	0.00
...............................................ATAAGGTGGAGATATTGTTGTCT......................................................................................................................................................................	23	1	12.00	11.00	0.00	1.00	0.00
...............................................ATAAGGTAGGGATATTGTTGTCT......................................................................................................................................................................	23	1	12.00	12.00	0.00	0.00	0.00
...............................................ATAAGGTAGATATATTGTTGTCT......................................................................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGGTATTGTTGTCT......................................................................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00
...............................................ATAGGGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00
...............................................ATAAGGTATAGATATTGTTGTCT......................................................................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTTTCT......................................................................................................................................................................	23	1	11.00	7.00	0.00	4.00	0.00
...............................................ATAATGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	10.00	10.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGC........................................................................................................................................................................	21	1	9.00	9.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTAT......................................................................................................................................................................	23	1	9.00	8.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTCTCT......................................................................................................................................................................	23	1	9.00	8.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGATATTATTGTCT......................................................................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00
...............................................ATAAGGCAGAGATATTGTTGT........................................................................................................................................................................	21	1	9.00	8.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGACATTGTTGTCT......................................................................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGCCT......................................................................................................................................................................	23	1	8.00	6.00	2.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTCGTCT......................................................................................................................................................................	23	1	8.00	8.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTA.....................................................................................................................................................................	24	1	7.00	7.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTCT........................................................................................................................................................................	21	1	7.00	7.00	0.00	0.00	0.00
...............................................ATAAGGGAGAGATATTGTTGTC.......................................................................................................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
...............................................ATAAGGCAGAGATATTGTTGTC.......................................................................................................................................................................	22	1	7.00	6.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTATCT......................................................................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGxxATTGTTGTCT......................................................................................................................................................................	21	1	7.00	7.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTCTTGTCT......................................................................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00
...............................................ACAAGGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	6.00	6.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTTTTGTCT......................................................................................................................................................................	23	1	6.00	6.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTTCC...................................................................................................................................................................	26	1	6.00	6.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTT.......................................................................................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
...............................................ATAAGGTxxAGATATTGTTGT........................................................................................................................................................................	19	1	6.00	6.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTTCT.....................................................................................................................................................................	24	1	6.00	6.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGCTGTCT......................................................................................................................................................................	23	1	6.00	5.00	1.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTTT......................................................................................................................................................................	23	1	5.00	3.00	2.00	0.00	0.00
...............................................ATAAGGTAGATATATTGTTGT........................................................................................................................................................................	21	1	5.00	5.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATACTGTTGTCT......................................................................................................................................................................	23	1	5.00	4.00	1.00	0.00	0.00
...............................................ATAAGATAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTxTTGTCT......................................................................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATATTTGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
...............................................ATACGGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	4.00	3.00	0.00	1.00	0.00
................................................TAAGGTAGAGATATTGTTGTCC......................................................................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCCC.....................................................................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAACGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	4.00	3.00	1.00	0.00	0.00
................................................TAAGGTAGAGATATTGTTGTCTTCA...................................................................................................................................................................	25	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATGTTGTTGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
...............................................TTAAGGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAAGGTATAGATATTGTTGTC.......................................................................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...............................................CTAAGGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..............................................CATAAGGTAGAGATATTGTTGTCT......................................................................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAAGGTAGACATATTGTTGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAAGGAAGAGATATTGTTGTC.......................................................................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAAGGTAGGGATATTGTTGT........................................................................................................................................................................	21	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAAGGTATAGATATTGTTGT........................................................................................................................................................................	21	1	4.00	4.00	0.00	0.00	0.00
...............................................GTAAGGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
...............................................ATAAGGTAAAGATATTGTTGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGTTATTGTTGTCT......................................................................................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
...............................................ATAAGGTAGTGATATTGTTGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTC..........................................................................................................................................................................	19	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTGGAGATATTGTTGT........................................................................................................................................................................	21	1	3.00	2.00	0.00	1.00	0.00
...............................................ATAAGTTAGAGATATTGTTGT........................................................................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTTTT...................................................................................................................................................................	26	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTTGTCTTTCT..................................................................................................................................................................	27	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGTT..........................................................................................................................................................................	19	1	3.00	2.00	0.00	1.00	0.00
...............................................ATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATAxTGTTGTCT......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGCGATATTGTTGTCT......................................................................................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
...............................................ATAAAGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAAAAATTGTTGTC.......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTGGAGATATTGTTGTC.......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTGxTGTCT......................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................ATAAGGTAGAGATATTTGT..........................................................................................................................................................................	19	1	3.00	3.00	0.00	0.00	0.00

droGri2

TCATA-----A--CACAC---T---C----A-AGAGC-TCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA-----------------AAAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AA--TGCAACGG----------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V109 Male body
...............................................ATAAGGTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	1200.00	1200.00
...............................................ATAAGGTAGAGATTTTGTTGT........................................................................................................................................................................	21	1	275.00	275.00
...............................................ATAAGGTAGAGATTTTGTTGTC.......................................................................................................................................................................	22	1	97.00	97.00
...............................................ATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................................	23	1	21.00	21.00
...............................................ATAAGGTAGAGATTTTGCTGTCT......................................................................................................................................................................	23	1	13.00	13.00
...............................................ATAAGGTAGAGATTTTGATGTCT......................................................................................................................................................................	23	1	11.00	11.00
...............................................ATAAGGTAGAGATATTGTTGTCT......................................................................................................................................................................	23	1	10.00	10.00
...............................................ATAAGGTAGAGATTTTGTTGTCC......................................................................................................................................................................	23	1	8.00	8.00
...............................................GTAAGGTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	5.00	5.00
...............................................ATAAGGTAGAGATTTTGTTG.........................................................................................................................................................................	20	1	5.00	5.00
...............................................ATAAGGTAGAGATTTTGTTGTCG......................................................................................................................................................................	23	1	5.00	5.00
...............................................ATAAGGTACAGATTTTGTTGTCT......................................................................................................................................................................	23	1	5.00	5.00
...............................................ATAAGGTAGAGATTTTGCTGT........................................................................................................................................................................	21	1	4.00	4.00
...............................................ATAAGGTAGAGCTTTTGTTGTCT......................................................................................................................................................................	23	1	4.00	4.00
...............................................ATAAGGTAGAGATTTTGGTGTCT......................................................................................................................................................................	23	1	3.00	3.00
...............................................ATAAGGTACAGATTTTGTTGT........................................................................................................................................................................	21	1	3.00	3.00
...............................................ATAAGGTATAGATTTTGTTGTCT......................................................................................................................................................................	23	1	3.00	3.00
................................................TAAGGTAGAGATTTTGTTGTCT......................................................................................................................................................................	22	1	3.00	3.00
...............................................ATAAGGTAGCGATTTTGTTGT........................................................................................................................................................................	21	1	3.00	3.00
...............................................ATAAGCTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	2.00	2.00
...............................................ATTAGGTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	2.00	2.00
...............................................ATAAGGTAGAGATTTTGATGT........................................................................................................................................................................	21	1	2.00	2.00
...............................................ATAAGGTATAGATTTTGTTGT........................................................................................................................................................................	21	1	2.00	2.00
...............................................ATAAGCTAGAGATTTTGTTGT........................................................................................................................................................................	21	1	2.00	2.00
...............................................ATAAGGTAGAGATTTTGGTGT........................................................................................................................................................................	21	1	2.00	2.00
...............................................ATAAGTTAGAGATTTTGTTGT........................................................................................................................................................................	21	1	2.00	2.00
...............................................ATAGGGTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	2.00	2.00
...............................................ATAAGGTAGAGATTTTGATGTC.......................................................................................................................................................................	22	1	2.00	2.00
...............................................ATAAGGTAGAGATTTTTTTGTCT......................................................................................................................................................................	23	1	2.00	2.00
...............................................ATAAGGTAGAGATTTTGTTGTA.......................................................................................................................................................................	22	1	2.00	2.00
...............................................ATAAGTTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	2.00	2.00
...............................................ATCAGGTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	2.00	2.00
...............................................AAAAGGTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	2.00	2.00
...............................................ATAAGGTAGAGAAATTGTTGTC.......................................................................................................................................................................	22	1	2.00	2.00
...............................................ATAAGGCAGAGATTTTGTTGT........................................................................................................................................................................	21	1	2.00	2.00
...............................................ATAAGGCAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	2.00	2.00
...............................................ATAAGGTAGAGATTTTGTTGTCA......................................................................................................................................................................	23	1	2.00	2.00
...............................................ATAAGGTAAAGATTTTGTTGTCT......................................................................................................................................................................	23	1	2.00	2.00
...............................................ATCAGGTAGAGATTTTGTTGTC.......................................................................................................................................................................	22	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTAGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTCT.........................................................................................................................................................................	20	1	1.00	1.00
................................................TAAGGTAGAGATATTGTTGTCT......................................................................................................................................................................	22	1	1.00	1.00
...............................................ATAAGGTGGAGATTTTGTTGTC.......................................................................................................................................................................	22	1	1.00	1.00
...............................................ATAAGATAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGGAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTCGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTCTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAAGTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTGGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTTTTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGCTAGAGATTTTGATGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGAAATTGTTG.........................................................................................................................................................................	20	1	1.00	1.00
...............................................ATAAGGAAGAGATTTTGTTG.........................................................................................................................................................................	20	1	1.00	1.00
...............................................ATAAGGTAGATATTTTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGxTGTCT......................................................................................................................................................................	22	1	1.00	1.00
...............................................ATAAGGAAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTATAGATTTTGTTGTC.......................................................................................................................................................................	22	1	1.00	1.00
...............................................ATAAGGTAGACATTTTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
................................................TAAGGTAGAGATTTTGTTGTCTT.....................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGCTGTAT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTxxAGATTTTGTTGTCT......................................................................................................................................................................	21	1	1.00	1.00
...............................................ATACGGTAGAGATTTTGTTGTC.......................................................................................................................................................................	22	1	1.00	1.00
...............................................ATAAGGTAGGGATTTTGTTGT........................................................................................................................................................................	21	1	1.00	1.00
...............................................ATAAGGTCGAGATTTTGTTGT........................................................................................................................................................................	21	1	1.00	1.00
...............................................ATAAGGTCGAGATTTTCTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTTATCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATATTGCTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATATTGTTGTCTTT....................................................................................................................................................................	25	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTTGTAT......................................................................................................................................................................	23	1	1.00	1.00
...............................................GTAAGGTAGAGATTTTGTTGTCC......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGGAGAGATTTTGGTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGACTTTGTTGT........................................................................................................................................................................	21	1	1.00	1.00
...............................................ATAAGGTAAAGATTTTGTTGTC.......................................................................................................................................................................	22	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTCTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTTGCCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGACTTTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTCGT........................................................................................................................................................................	21	1	1.00	1.00
................................................TAAGGTAGAGATATTGTTGTCTTC....................................................................................................................................................................	24	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTTGTCTT.....................................................................................................................................................................	24	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGGTGTC.......................................................................................................................................................................	22	1	1.00	1.00
...............................................ATAAGGTAGAGATTTCGTTGT........................................................................................................................................................................	21	1	1.00	1.00
...............................................ATAACGTAGAGATTTTGTTGTC.......................................................................................................................................................................	22	1	1.00	1.00
...............................................ATTAGGTAGAGATTTTCTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATACGGTAGAGATTTTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTTGACC......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTTTTGT........................................................................................................................................................................	21	1	1.00	1.00
...............................................ATAAGGTGTAGATTTTGTTGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTCGTCT......................................................................................................................................................................	23	1	1.00	1.00
...............................................ATAAGGTAGAGATTTTGTTGTTCT.....................................................................................................................................................................	24	1	1.00	1.00

Generated: 04/20/2012 at 05:19:21 EDT

dme-mir-962

chr2L:5641298-5641389 +

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup