dme-mir-962- 12- and 20-way alignments

dme-mir-962	chr2L:5641298-5641389 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 5641315-5641339
   star strand at position 5641352-5641373
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2L:5641283-5641404 +	GAAT---TCA-------------ACTACTTCG-ATGGGGCA-CTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTGATAG-----------------------------------TA
droSim1	chr2L:5434368-5434488 +	GAAT---CTACA-----------ACTACCTCG-ATGGGGCG-CTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CC--TGCAACAGTGATA--------------------------------------
droSec1	super_5:3719023-3719143 +	GAAT---CTACA-----------ACTACCTCG-ATGGGGCA-TTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTGGTA--------------------------------------
droYak2	chr2L:13551914-13552032 -	GAAT---CCA-------------ACCAACTTC-ATGGGGCA-CACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTAT--------------T----CAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTGATA--------------------------------------
droEre2	scaffold_4929:5729744-5729862 +	GAAT---CCC-------------AGTACCTCC-TTGGGGCA-CTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTAT--------------T----CGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTGACA--------------------------------------
droAna3	scaffold_12916:11085088-11085210 +	GGGC---CCA-------------ACCACCTGGCCGAGGGCA-CTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCAA--------------A----TAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CA--AGCAACAATGATAA-----------------------------------CA
dp4	chr4_group4:3182204-3182340 -	AAAT---GCCAC-----------ATGATGCAA-ATGGAGCA-GTCGTGTTTTAAGGTACAGACTTTGA---------GTCTAT--------------TC---TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGC-CAACAGCAACAGCTACA-----------AA----ACGAGTAACGAGGAGAG-ATA
droPer1	super_10:2201135-2201271 -	AAAT---GCCAC-----------ATGATGCAA-ATGGAGCA-GTCGTGTTTTAAGGTACAGACTTTGA---------GTCTAT--------------TC---TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGC-CAACAGCAACAGCTACA-----------AA----ACGAGTAACGAGGAGAG-ATA
droWil1	scaffold_180708:8625857-8626006 -	GGAT---ACACGTTT--------TCTATTTAA-TAAGGACC-CTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATT----TGTAACAAT-TGTT----AAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACA--TGCAACAACA-TA---------TAAT-----------ACAATCAAAC-AAA
droVir3	Unknown	ACAC---ACA-------------CACACATAAGAAAGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT---TTACATATG--------GT----GAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AA--TGCAACGGTGATAGGCAGCACATTTAGCATTTGAATGCC--GGACTGCTCA
droMoj3	scaffold_6500:14018361-14018470 +	G---------------------------------TAGAGCG-CTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCA----TATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AA--TGCAGCA--------------------------------------------
droGri2	scaffold_15252:3147210-3147335 +	ACTAAGAGCAGGTTACTTTCATAACACACTC---AAGAGCT-CTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA---------------A----AAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AA--TGCAACGG-------------------------------------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2L:5641283-5641404 +	NA	GAATTC--AACTACT----------------TCGAT-GGGGC-ACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTAT-----------------TCAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCCCA--TGCAACAG----------------------TGATAG------------------------------------------------------------------------TA
droSim1	chr2L:5434368-5434488 +	3	GAATCTACAACTACC----------------TCGAT-GGGGC-GCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT-----------------TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCCCC--TGCAACAG----------------------TGATA---------------------------------------------------------------------------
droSec1	super_5:3719023-3719143 +	6	GAATCTACAACTACC----------------TCGAT-GGGGC-ATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT-----------------TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCCCA--TGCAACAG----------------------TGGTA---------------------------------------------------------------------------
droYak2	chr2L:13551914-13552032 -	3	GAATCC--AACCAAC----------------TTCAT-GGGGC-ACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTAT-----------------TCAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCCCA--CGCAACAG----------------------TGATA---------------------------------------------------------------------------
droEre2	scaffold_4929:5729744-5729862 +	3	GAATCC--CAGTACC----------------TCCTT-GGGGC-ACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTAT-----------------TCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCCCA--CGCAACAG----------------------TGACA---------------------------------------------------------------------------
droEug1	scf7180000409063:317598-317719 +	5	AAACCC--AACTTCC----------------TCGCC-GGGGC-ACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGCGTT-----------------CTAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCCCA--CGCAACCG----------------------GGATAC------------------------------------------------------------------------CG
droBia1	scf7180000302422:3830833-3830950 +	4	AGGCC---AACCAAC----------------CCG-T-CGGGC-ACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTCTAT-----------------TCAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCCCA--TGCATCAG----------------------TGATA---------------------------------------------------------------------------
droTak1	scf7180000415871:385570-385688 +	5	AAACCC--AACCAAC----------------TCGAC-GGGGC-ACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTCAAT-----------------TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCCCA--CGCAACAG----------------------TGATA---------------------------------------------------------------------------
droEle1	scf7180000490753:30468-30581 +	1	GAACCC--AATTACC----------------TC----GGGGC-ACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CACTAC-----------------TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC-CA--CGCAACAG----------------------TGATA---------------------------------------------------------------------------
droRho1	scf7180000778253:33735-33851 -	12	GAGTTC--AACTACC----------------TCCAC-GGGGC-ACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATACTA------------------CTGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC-CA--CGCAACAG----------------------TGATA---------------------------------------------------------------------------
droFic1	scf7180000453932:197438-197556 -	5	GAAGCC--ATCC--C----------------CCCAC-TGGGC-AGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTACAT-----------------CCAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCCCA--CGCAACAA-----------------------GATAG------------------------------------------------------------------------TG
droKik1	scf7180000302389:430827-430949 -	7	TCCTGG--AACTCCC----------------TGCCC-AAGGC-ACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTCTAAG-------------C--TCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCCCA--CGCAACAG----------------------TGATAA------------------------------------------------------------------------TG
droAna3	scaffold_12916:11085088-11085210 +	6	GGGCCC--AACCACC----------------TGGCCGAGGGC-ACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCAA-----------------ATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCCCA--AGCAACAA----------------------TGATAA------------------------------------------------------------------------CA
droBip1	scf7180000396572:742837-742959 +	6	GGGCCC--AACCACC----------------TGGTCGGGGGC-ACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTCCAA-----------------ATAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCTCA--AGCAACCA----------------------TGATAA------------------------------------------------------------------------TA
dp4	chr4_group4:3182204-3182349 -	1	GAGTGC--CACAAAT-----GCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTATT----------------CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGCCAACAGCAACAGCTACAAAACGAGTAACGAGGAGAGATA---------------------------------------------------------------------------
droPer1	super_10:2201135-2201280 -	2	GAGTGC--CACAAAT-----GCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTATT----------------CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGCCAACAGCAACAGCTACAAAACGAGTAACGAGGAGAGATA---------------------------------------------------------------------------
droWil1	scaffold_181149:172447-172553 -	25	GATGAA--ATGGATACAAATT-TTTATTATTTAATA-AGGAC-CCTGAAGTTATAAGGTAGAGAAATTGTTGTGTTTA-TATTT--GTAACAAT-TG--T--TAAGACATCACTTTCACT---------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12963:3615418-3615613 +	10	ACACAC--ACACATA----------------AGAA--AGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT-TTACAT-ATG----------G--TGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCAAA--TGCAACGG----------------------AACCATTTTGGAGGAACATCATATTTAGAATAAGCCACATGATAGGCAGCACATTTAGCATTTGAATGCCGGACTGCTCA
droMoj3	scaffold_6500:14018360-14018470 +	10	GT-----------------------------------AGAGC-GCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTT-G-CAT-ATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTAAA--TGCAGCA-------------------------------------------------------------------------------------------------------
droGri2	scaffold_15252:3147228-3147335 +	6	TCAT----AACACAC----------------TC--A-AGAGC-TCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA------------------AAAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCAAA--TGCAACGG------------------------------------------------------------------------------------------------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

GAAT---TCA-------------ACTACTTCG-ATGGGGCA-CTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTGATAG-----------------------------------TA

Size

Hit Count

Total Norm

droSim1

GAAT---CTACA-----------ACTACCTCG-ATGGGGCG-CTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CC--TGCAACAGTGATA--------------------------------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................................ATAAGGTAGAGAAATTGATGTTGTC.........................................................................................................................	25	1	268.00	6.00	0.00	243.00	19.00
..................................................ATAAGGTAGAGAAATTGATGTTGTCT........................................................................................................................	26	1	55.00	1.00	0.00	52.00	2.00
..................................................ATAAGGTAGAGAAATTGATGTTGT..........................................................................................................................	24	1	40.00	0.00	0.00	40.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTT............................................................................................................................	22	1	26.00	3.00	1.00	22.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTTGTCC........................................................................................................................	26	1	6.00	0.00	0.00	5.00	1.00
..................................................ATAAGGTAGAGAAATTGATG..............................................................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
..........................................................................................................CTTCAGTTTCATTGCCTTTCA.....................................................................	21	1	3.00	0.00	0.00	3.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTTGC..........................................................................................................................	24	1	2.00	0.00	0.00	2.00	0.00
..................................................ATAAGGGAGAGAAATTGATGTTGTC.........................................................................................................................	25	1	2.00	0.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAATTGATGT.............................................................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTTG...........................................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTTGTCG........................................................................................................................	26	1	2.00	0.00	0.00	2.00	0.00
...................................................TAAGGTAGAGAAATTGATGTTGTCT........................................................................................................................	25	1	2.00	0.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTTGG..........................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGAAGAGAAATTGATGTTGTC.........................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGGAGAGAAATTGATGTTGTCT........................................................................................................................	26	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................ACTTCAGTTTCATTGCCTTTCA.....................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGATxTTGTCC........................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAATGTAGAGAAATTGATGTTGT..........................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGATATTGATGTTGTT.........................................................................................................................	25	1	1.00	1.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTTGTT.........................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGCTATTGATGTT............................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................ATGGATGTTGTCTACGCT...................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................................CTTCAGTTTCATTGCCTTTCAA....................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAATGTAGAGAAATTGATGTTGTC.........................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAACGTAGAGAAATTGATGTTGTC.........................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGGGAAATTGATGTTGT..........................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTCGTCT........................................................................................................................	26	1	1.00	0.00	0.00	1.00	0.00
...................................................TAAGGTAGAGAAATTGATGTTGTCC........................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGAAGAGAAGTTGATGTTGTC.........................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTTGTCTT.......................................................................................................................	27	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................T----CAGACTTCAGTTTCATTGCCT.........................................................................	22	1	1.00	0.00	0.00	0.00	1.00

droSec1

GAAT---CTACA-----------ACTACCTCG-ATGGGGCA-TTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTGGTA--------------------------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................ATAAGGTAGAGAAATTGATGTT............................................................................................................................	22	1	812.00	649.00	157.00	6.00
..................................................ATAAGGTAGAGAAATTGATGTTGT..........................................................................................................................	24	1	762.00	697.00	61.00	4.00
..................................................ATAAGGTAGAGAAATTGATGTTGTC.........................................................................................................................	25	1	751.00	542.00	200.00	9.00
..................................................ATAAGGTAGAGAAATTGATGTTGTCT........................................................................................................................	26	1	486.00	352.00	130.00	4.00
..................................................ATAAGGTAGAGAAATTGATGTTG...........................................................................................................................	23	1	389.00	376.00	10.00	3.00
..................................................ATAAGGTAGAGAAATTGATGT.............................................................................................................................	21	1	26.00	22.00	4.00	0.00
..................................................ATAAGGTAGAGAAATTGACGTTGT..........................................................................................................................	24	1	11.00	11.00	0.00	0.00
...................................................TAAGGTAGAGAAATTGATGTTGTCT........................................................................................................................	25	1	8.00	6.00	2.00	0.00
..................................................ATAAGGTAGAGAAATTGATG..............................................................................................................................	20	1	7.00	7.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGAAGTTGT..........................................................................................................................	24	1	6.00	6.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTTT...........................................................................................................................	23	1	6.00	6.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTTGTT.........................................................................................................................	25	1	6.00	5.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGACGTTGTC.........................................................................................................................	25	1	5.00	5.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGACGTTG...........................................................................................................................	23	1	5.00	5.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGACGTTGTCT........................................................................................................................	26	1	5.00	5.00	0.00	0.00
..................................................ATAAGGGAGAGAAATTGATGTTGTC.........................................................................................................................	25	1	5.00	4.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGAAGTTGTC.........................................................................................................................	25	1	5.00	5.00	0.00	0.00
...................................................TAAGGTAGAGAAATTGATGTTGTC.........................................................................................................................	24	1	4.00	4.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGACGTT............................................................................................................................	22	1	4.00	4.00	0.00	0.00
...................................................TAAGGTAGAGAAATTGATGTTGT..........................................................................................................................	23	1	4.00	3.00	1.00	0.00
..................................................ATAAGGGAGAGAAATTGATGTT............................................................................................................................	22	1	4.00	3.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTTGTCTT.......................................................................................................................	27	1	4.00	2.00	2.00	0.00
..................................................ATAAGGCAGAGAAATTGATGTT............................................................................................................................	22	1	3.00	3.00	0.00	0.00
..................................................ATAAGGCAGAGAAATTGATGTTGTCT........................................................................................................................	26	1	3.00	3.00	0.00	0.00
..................................................ATAAGGGAGAGAAATTGATGTTG...........................................................................................................................	23	1	3.00	3.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGGTGTTGTC.........................................................................................................................	25	1	3.00	2.00	1.00	0.00
...................................................TAAGGTAGAGAAATTGATGTTG...........................................................................................................................	22	1	3.00	3.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGAGGTTGT..........................................................................................................................	24	1	3.00	3.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGAAGTTG...........................................................................................................................	23	1	3.00	3.00	0.00	0.00
..................................................ATAAGGCAGAGAAATTGATGTTGT..........................................................................................................................	24	1	3.00	3.00	0.00	0.00
..................................................ATAAGGGAGAGAAATTGATGTTGT..........................................................................................................................	24	1	3.00	3.00	0.00	0.00

droYak2

GAAT---CCA-------------ACCAACTTC-ATGGGGCA-CACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTAT--------------T----CAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTGATA--------------------------------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................ATAAGGTAGAGAAATTGTTGTC............................................................................................................................	22	1	1206.00	1.00	1.00	1158.00	16.00	30.00
..................................................ATAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	615.00	0.00	0.00	600.00	2.00	13.00
..................................................ATAAGGTAGAGAAATTGTTGT.............................................................................................................................	21	1	110.00	0.00	0.00	107.00	2.00	1.00
...................................................TAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	22	1	43.00	0.00	0.00	43.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTG..............................................................................................................................	20	1	21.00	0.00	0.00	20.00	1.00	0.00
..................................................ATAAGGGAGAGAAATTGTTGTC............................................................................................................................	22	1	10.00	0.00	0.00	8.00	1.00	1.00
..................................................ATAAGGCAGAGAAATTGTTGTC............................................................................................................................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
..................................................ATAAGGTAGAGACATTGTTGTCT...........................................................................................................................	23	1	6.00	0.00	0.00	6.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGTC............................................................................................................................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTTTTGTC............................................................................................................................	22	1	5.00	0.00	0.00	4.00	0.00	1.00
..................................................ATAAGGTAGAGAAATTGTTGTCC...........................................................................................................................	23	1	4.00	0.00	0.00	2.00	0.00	2.00
..................................................ATAAGGTAGAGAAAATGTTGTCT...........................................................................................................................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
..................................................ATAAGGTxxAGAAATTGTTGTC............................................................................................................................	20	1	3.00	0.00	0.00	3.00	0.00	0.00
..................................................ATAAGGAAGAGAAATTGTTGTC............................................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCA...........................................................................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
..................................................ATAAGGTAGAGACATTGTTGTC............................................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
..................................................ATAAGGGAGAGAAATTGTTGTCT...........................................................................................................................	23	1	3.00	0.00	0.00	2.00	0.00	1.00
..................................................ATAAGGTAGGGAAATTGTTGTC............................................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGCCT...........................................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00	0.00
..................................................ATAAGGTGGAGAAATTGTTGTC............................................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
..................................................ATAAGGTAGAGAGATTGTTGTC............................................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTTTTGTCT...........................................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGCTGTCT...........................................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00	0.00
..................................................ATAAGGTCGAGAAATTGTTGTC............................................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
..................................................ATAAGGTAGAGACATTGTTGAC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................TCATAAGGTAGAGAAATTGTTGTC............................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAGTTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................ACAAGGTAGAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATGAGGAAGAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTT...............................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATTAGGTAGAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATCGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAACTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGGGATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................TATAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTATTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................................AAGGTAGAGAAATTGTTGTCT...........................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTCTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................ATAGGGTAGAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTTGAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................TAAGGTAGAGAAATTGTTGTCTA..........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................TAAGGTAGAGAAAATGTTGTCT...........................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGGTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGT................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGGAATTGTTGT.............................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGGAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGCTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTT..........................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTGGAGAAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGAC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAGATTGTTGT.............................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGGAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGCTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................TAAGGTAGAGCAATTGTTGTCT...........................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................CAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTTCT..........................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATCAGGTAGAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGACT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................CATAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................TAAGGTAGAGAAATTGTTGCCT...........................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTATAGAAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAACTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................TAAGGTAGAGAAATTGTTCT.............................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTCGAGAAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTATC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTxTTGTC............................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAAAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTAGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................GTAAGGTAGAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................................ATGTAGAGAAATTGTTGTC............................................................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTATAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTT............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGTTAGAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................................AGGTAGAGAAATTGTTGTC............................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTACAGAAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTCTTGT.............................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGCAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCG...........................................................................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................ATAAGGCAGAGAAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTACAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.........................................................................................................................CTTGCAATTTGTTTGGCC.........................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................ATAAAGTAGAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGxAATTGTTGTC............................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTCGAGACATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGACAAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGCAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGTCC...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTCC.........................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGATAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGTTG..............................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAATTTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTCTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGT.............................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

GAAT---CCC-------------AGTACCTCC-TTGGGGCA-CTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTAT--------------T----CGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTGACA--------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..................................................ATAAGGTAGAAAAATTGTTGTC............................................................................................................................	22	1	767.00	3.00	35.00	0.00	729.00
..................................................ATAAGGTAGAAAAATTGTTGT.............................................................................................................................	21	1	52.00	0.00	1.00	0.00	51.00
..................................................ATAAGGTAGAAAAATTGTTGTCT...........................................................................................................................	23	1	35.00	0.00	4.00	0.00	31.00
..................................................ATAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	28.00	0.00	0.00	28.00	0.00
..................................................ATAAGGTAGAAAAATTGTTG..............................................................................................................................	20	1	10.00	0.00	1.00	0.00	9.00
..................................................ATAATGTAGAAAAATTGTTGTC............................................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
..................................................ATAAGGTAGAAAAATTTTTGTC............................................................................................................................	22	1	7.00	0.00	0.00	0.00	7.00
..................................................ATAAGGTATAAAAATTGTTGTC............................................................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..................................................ATAAGGCAGAAAAATTGTTGTC............................................................................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..................................................ATAAGGTAGxAAAATTGTTGTC............................................................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
..................................................ATAGGGTAGAAAAATTGTTGTC............................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
..................................................ATAAGGTAGAAAAATTGTTGTA............................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...................................................TAAGGTAGAAAAATTGTTGTCT...........................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
..................................................ATAAGTTAGAAAAATTGTTGTC............................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
..................................................GTAAGGTAGAAAAATTGTTGTC............................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
..................................................ATCAGGTAGAAAAATTGTTGTC............................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
..................................................ATAAGGTAGAGAAATTGTTGT.............................................................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
..................................................ATAAGGTAGAAAAATTGTCGTC............................................................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
..................................................ATAAGGTAGAAAAGTTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAxAAAAATTGTTGTC............................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................ATGAGGTAGAAAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAAAGATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAAAAATCGTTG..............................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................ATACGGTAGAAAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAAAAATCGTTTTC............................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................AAAGGTAGAAAAATTGTTGTC............................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGxxGAAAAATTGTTGTC............................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................ATCAGGTAGACAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................TAAGGTAGAAAAATTGTTGTCTT..........................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGTTAGAAAAATTGTTGT.............................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAAAAATCGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAAAAATTGTTGTCA...........................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGATAGAAAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAAAAATTGCTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAGAAATTGTTTTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGTTAGAAAAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAAAAATTATTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAGAAATTTTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAAAACTTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...................................................TAAGGTAGAAAAATTGTTGTC............................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAAAAATTTTTGT.............................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGGAGAAACATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAGAAATTGTTGTCTA..........................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGAAGAAAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGCAGAGAAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................................ATCAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGTAAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGCAGAAAAATTGTTGT.............................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTACAAAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAAAAATTxTTGTC............................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGAGAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTGGAAAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGATAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAAGGTAGACAAACTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................ATAATGTAGAAAAATTTTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................CTAAGGTAGAAAAATTGTTGTC............................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...................................................TAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................ATAATGTAGAAAAATTGTTGT.............................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00

droAna3

GGGC---CCA-------------ACCACCTGGCCGAGGGCA-CTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCAA--------------A----TAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CA--AGCAACAATGATAA-----------------------------------CA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................ATAAGGTAGAGAAAATAATGTCT...........................................................................................................................	23	1	1266.00	1118.00	122.00	26.00	0.00
..................................................ATAAGGTAGAGAAAATAATGTC............................................................................................................................	22	1	1211.00	1110.00	44.00	57.00	0.00
..................................................ATAAGGTAGAGAAAATAATGT.............................................................................................................................	21	1	166.00	152.00	6.00	8.00	0.00
..................................................ATAAGGTAGAGAAAATAATG..............................................................................................................................	20	1	75.00	68.00	4.00	3.00	0.00
..................................................ATAAGGTAGAGAAAATAATGACT...........................................................................................................................	23	1	17.00	17.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATAATGAC............................................................................................................................	22	1	11.00	11.00	0.00	0.00	0.00
..........................................................................................................CATCAATTTCCCTAGCTTGCAT....................................................................	22	1	11.00	8.00	3.00	0.00	0.00
..................................................ATAAGGTATAGAAAATAATGTC............................................................................................................................	22	1	10.00	9.00	1.00	0.00	0.00
..................................................ATAAGGGAGAGAAAATAATGTC............................................................................................................................	22	1	9.00	8.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAAATAATGCC............................................................................................................................	22	1	8.00	8.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGCAAATAATGTCT...........................................................................................................................	23	1	8.00	6.00	1.00	1.00	0.00
..................................................ATAAGGTAGAGGAAATAATGTC............................................................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAGAATAATGTC............................................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATAAT...............................................................................................................................	19	1	6.00	4.00	2.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATAATGCCT...........................................................................................................................	23	1	6.00	6.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGTAAATAATGTC............................................................................................................................	22	1	6.00	5.00	1.00	0.00	0.00
..................................................ATAAGGTAGATAAAATAATGTCT...........................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAGATAATGTCT...........................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATAATGGC............................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
..................................................ATAAGGTAGATAAAATAATGTC............................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGCAAATAATGTC............................................................................................................................	22	1	5.00	4.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGGAAATAATGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAACAATGTC............................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAATGTAGAGAAAATAATGTCT...........................................................................................................................	23	1	4.00	3.00	1.00	0.00	0.00
..................................................ATAAGGAAGAGAAAATAATGTC............................................................................................................................	22	1	4.00	3.00	0.00	1.00	0.00
..................................................ATAAGGCAGAGAAAATAATGTC............................................................................................................................	22	1	4.00	3.00	0.00	1.00	0.00
..................................................ATAATGTAGAGAAAATAATGTC............................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATAATGTT............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATAATGGCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATAATAATGTC............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGTAAATAATGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAAGAATGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAAAAAATAATGTCT...........................................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAAAAAATGTC............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATAATGTCA...........................................................................................................................	23	1	3.00	1.00	1.00	1.00	0.00
..................................................ATAAGGTATAGAAAATAATGTCT...........................................................................................................................	23	1	3.00	1.00	2.00	0.00	0.00
..................................................AGAAGGTAGAGAAAATAATGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAACATAATGTC............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ACAAGGTAGAGAAAATAATGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAACAATGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGGAGAGAAAATAATGTCT...........................................................................................................................	23	1	3.00	1.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAAATAATTTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAGATAATGTC............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00

dp4

AAAT---GCCAC-----------ATGATGCAA-ATGGAGCA-GTCGTGTTTTAAGGTACAGACTTTGA---------GTCTAT--------------TC---TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGC-CAACAGCAACAGCTACA-----------AA----ACGAGTAACGAGGAGAG-ATA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.................................................TTTAAGGTACAGACTTTGA---------GTC....................................................................................................................	22	1	217.00	201.00	0.00	8.00	8.00
.................................................TTTAAGGTACAGACTTTGA---------G......................................................................................................................	20	1	32.00	26.00	0.00	2.00	4.00
.................................................TTTAAGGTACAGACTTTGA---------GTCT...................................................................................................................	23	1	25.00	8.00	0.00	2.00	15.00
.................................................TTTAAGGTACAGACTTTGA---------GT.....................................................................................................................	21	1	12.00	1.00	0.00	1.00	10.00
.................................................TTTAAGGTACAGACTTTGA---------GTT....................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................TTAAGGTACAGACTTTGA---------GTC....................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
.................................................TTTAAGGTACATACTTTGA---------GTC....................................................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------GA.....................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------TTT....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGT---------GTCT...................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTxA---------GTC....................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.................................................TTTAATGTACAGACTTTGA---------GTC....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------.......................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.................................................TTTAAGGTACAGACxTTGA---------GTC....................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.....................................AGCA-GTCGTGTTTTAAGGTAC.........................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................................................................CTGGCGG-CAGCAGCAACA............................................	18	1	1.00	1.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------GTTT...................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------GCC....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................................TAAGGTACAGACTTTTA---------GTC....................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.................................................TTTACGGTACAGACTTTGA---------GTC....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................TTTAATGTACAGACTTTGA---------GTCT...................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00

droPer1

AAAT---GCCAC-----------ATGATGCAA-ATGGAGCA-GTCGTGTTTTAAGGTACAGACTTTGA---------GTCTAT--------------TC---TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGC-CAACAGCAACAGCTACA-----------AA----ACGAGTAACGAGGAGAG-ATA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................................................TTTAAGGTACAGACTTTGA---------GTC....................................................................................................................	22	1	233.00	232.00	0.00	1.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------GTCT...................................................................................................................	23	1	37.00	37.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------G......................................................................................................................	20	1	32.00	32.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------GT.....................................................................................................................	21	1	14.00	14.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------GTT....................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------.......................................................................................................................	19	1	5.00	5.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------GTTT...................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACGGACTTTGA---------GTC....................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGG---------G......................................................................................................................	20	1	2.00	2.00	0.00	0.00	0.00	0.00
...........C-----------ATGATGCxA-ATCGAGCA-GT........................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTAAAGACTTTGA---------GTC....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------GTA....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACATACTTTGA---------GTC....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACGTTGA---------GTCT...................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGAACAGACTTTGA---------G......................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTCGA---------GTC....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------GTCA...................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGGCTTTGA---------GTC....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................CTTAAGGTACAGACTTTGA---------GTC....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................TTTAAGGTACAGACTTTGA---------GAC....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................TTAAGGTACAGGCTTTGA---------GTC....................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................................................................................A----ACGAGTAACGxGGAGAT-A..	18	1	1.00	0.00	0.00	0.00	1.00	0.00

droWil1

GGAT---ACACGTTT--------TCTATTTAA-TAAGGACC-CTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATT----TGTAACAAT-TGTT----AAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACA--TGCAACAACA-TA---------TAAT-----------ACAATCAAAC-AAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................ATAAGGTAGAGAAAATGTTGTCT...........................................................................................................................	23	1	1865.00	1762.00	14.00	63.00	26.00
..................................................ATAAGGTAGAGAAAATGTTGTC............................................................................................................................	22	1	1231.00	1179.00	13.00	27.00	12.00
..................................................ATAAGGTAGAGAAAATGTTGT.............................................................................................................................	21	1	159.00	156.00	0.00	3.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGTCC...........................................................................................................................	23	1	52.00	43.00	0.00	2.00	7.00
..................................................ATAAGGTAGAGAAAATGTTG..............................................................................................................................	20	1	39.00	39.00	0.00	0.00	0.00
...................................................TAAGGTAGAGAAAATGTTGTCT...........................................................................................................................	22	1	31.00	28.00	1.00	2.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGTCA...........................................................................................................................	23	1	22.00	22.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	22.00	22.00	0.00	0.00	0.00
..................................................ATAAGGTAGAAAAATTGTTGTC............................................................................................................................	22	1	13.00	0.00	13.00	0.00	0.00
................................................................................................TT----AAGACATCACTTTCACTAGC..........................................................................	22	1	9.00	4.00	1.00	3.00	1.00
..................................................ATAAGGTAGAGAAAGTGTTGTCT...........................................................................................................................	23	1	8.00	6.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAAATAATGTCT...........................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATAATGTC............................................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAGTGTTGTC............................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGACAATGTTGTCT...........................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGTT............................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
..................................................ACAAGGTAGAGAAAATGTTGTC............................................................................................................................	22	1	5.00	4.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGTCTT..........................................................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGTCTA..........................................................................................................................	24	1	4.00	3.00	0.00	1.00	0.00
..................................................GTAAGGTAGAGAAAATGTTGTCT...........................................................................................................................	23	1	4.00	3.00	0.00	0.00	1.00
................................................................................................TT----AAGACATCACTTTCACTAG...........................................................................	21	1	4.00	3.00	0.00	0.00	1.00
..................................................ATAAGGTAGAGAAAATGTT...............................................................................................................................	19	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGTTAGAGAAAATGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGTTATC............................................................................................................................	22	1	3.00	2.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGTCG...........................................................................................................................	23	1	3.00	2.00	0.00	0.00	1.00
..................................................ATAGGCTAGAGAAAATGT................................................................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
..................................................ATAGGCTAGAGAAAATGTT...............................................................................................................................	19	1	3.00	2.00	1.00	0.00	0.00
..................................................ATAAGGCAGAGAAAATGTTGTC............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.................................................TATAAGGTAGAGAAAATGTTGTC............................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAAAAAATGTTGTC............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAxAAAATGTTGTCT...........................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAACGTAGAGAAAATGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.................................................TATAAGGTAGAGAAAATGTTGTCT...........................................................................................................................	24	1	3.00	2.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGACAATGTTGT.............................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGCCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAGTGTTGT.............................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAACTGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGTCTC..........................................................................................................................	24	1	3.00	2.00	0.00	1.00	0.00
..........................................................................................................CATCACTTTCACTAGCTTTCA.....................................................................	21	1	3.00	2.00	0.00	1.00	0.00
..................................................ATAAGGGAGAGAAAATGTTGTC............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGCGAAAATGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGACAATGTTGTC............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAACATGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00

droVir3

ACAC---ACA-------------CACACATAAGAAAGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT---TTACATATG--------GT----GAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AA--TGCAACGGTGATAGGCAGCACATTTAGCATTTGAATGCC--GGACTGCTCA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................ATAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	13949.00	13436.00	26.00	28.00	437.00	22.00
..................................................ATAAGGTAGAGAAATTGTTGTCC...........................................................................................................................	23	1	1385.00	1249.00	0.00	0.00	136.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTCC.........................................................................................................................	25	1	597.00	590.00	0.00	0.00	7.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTC............................................................................................................................	22	1	543.00	523.00	2.00	1.00	17.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTC..........................................................................................................................	24	1	272.00	240.00	0.00	0.00	32.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGT.............................................................................................................................	21	1	149.00	142.00	3.00	2.00	2.00	0.00
...................................................TAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	22	1	102.00	96.00	0.00	1.00	5.00	0.00
..................................................ATAAGGGAGAGAAATTGTTGTCT...........................................................................................................................	23	1	44.00	41.00	0.00	0.00	3.00	0.00
..................................................ATAAGGTAGAGAAATTGATGTCT...........................................................................................................................	23	1	35.00	35.00	0.00	0.00	0.00	0.00
..................................................ATAAGGCAGAGAAATTGTTGTCT...........................................................................................................................	23	1	35.00	32.00	1.00	1.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTTC.........................................................................................................................	25	1	32.00	31.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCCC..........................................................................................................................	24	1	31.00	25.00	0.00	0.00	6.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCG...........................................................................................................................	23	1	27.00	1.00	0.00	0.00	25.00	1.00
..................................................ATAAGGAAGAGAAATTGTTGTCT...........................................................................................................................	23	1	26.00	26.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTATTGTCT...........................................................................................................................	23	1	25.00	23.00	0.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAATTGCTGTCT...........................................................................................................................	23	1	24.00	24.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTxxAGAAATTGTTGTCT...........................................................................................................................	21	1	24.00	24.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATGTTGTCT...........................................................................................................................	23	1	23.00	23.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTCCC---.....................................................................................................................	26	1	22.00	22.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCA...........................................................................................................................	23	1	18.00	18.00	0.00	0.00	0.00	0.00
...................................................TAAGGTAGAGAAATTGTTGTCTA..........................................................................................................................	23	1	18.00	18.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGCCT...........................................................................................................................	23	1	18.00	18.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAAAAATTGTTGTCT...........................................................................................................................	23	1	17.00	17.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAACTGTTGTCT...........................................................................................................................	23	1	16.00	16.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGGGAAATTGTTGTCT...........................................................................................................................	23	1	16.00	15.00	0.00	0.00	1.00	0.00
..................................................GTAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	16.00	16.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTG..............................................................................................................................	20	1	15.00	14.00	1.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAGTTGTTGTCT...........................................................................................................................	23	1	14.00	14.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTTTCT...........................................................................................................................	23	1	12.00	11.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAACTTGTTGTCT...........................................................................................................................	23	1	12.00	11.00	1.00	0.00	0.00	0.00
..................................................ATAAGGTGGAGAAATTGTTGTCT...........................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTC..............................................................................................................................	20	1	11.00	10.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTCTTGTCT...........................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTCGTCT...........................................................................................................................	23	1	10.00	10.00	0.00	0.00	0.00	0.00
..................................................ACAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	10.00	9.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTTTTGTCT...........................................................................................................................	23	1	10.00	6.00	0.00	1.00	3.00	0.00
..................................................ATAAGGTAGAGAAATTGTTCTCT...........................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
..................................................ATAAGTTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGACT...........................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTTC...........................................................................................................................	23	1	9.00	7.00	0.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAATTGTTATCT...........................................................................................................................	23	1	9.00	8.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAGATTGTTGTCT...........................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATCGTTGTCT...........................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
.................................................CATAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	24	1	9.00	8.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTGT...........................................................................................................................	23	1	8.00	8.00	0.00	0.00	0.00	0.00
..................................................ATAAGGCAGAGAAATTGTTGTCC...........................................................................................................................	23	1	8.00	8.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAxAAATTGTTGTCT...........................................................................................................................	22	1	8.00	6.00	0.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTTT...........................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
..................................................ATGAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
..................................................ATAATGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	7.00	4.00	1.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTCT.........................................................................................................................	25	1	7.00	7.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGGAATTGTTGTCT...........................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
..................................................ATAGGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	6.00	6.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAATxTTGTCT...........................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
..................................................ATAAGGGAGAGAAATTGTTGTC............................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGCAATTGTTGTCT...........................................................................................................................	23	1	5.00	4.00	0.00	0.00	1.00	0.00
..................................................ATAAGCTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
..................................................ATAAGGCAGAGAAATTGTTGTCTCC.........................................................................................................................	25	1	5.00	5.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTCTCC...........................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
..................................................ATAAGGAAGAGAAATTGTTGTCTCC.........................................................................................................................	25	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCCCC.........................................................................................................................	25	1	4.00	2.00	0.00	0.00	2.00	0.00
..................................................ATAAGGTAGAGAAATTGTAGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATGGTTGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................TTAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTAT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTAA...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTTCC---.....................................................................................................................	26	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATAGTTGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTGGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................ATAACGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTA..........................................................................................................................	24	1	4.00	3.00	0.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCCT..........................................................................................................................	24	1	4.00	3.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTATTGTCTCC.........................................................................................................................	25	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGTGAAATTGTTGTCT...........................................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGCTGTCC...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAAGTGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTCC..............................................................................................................................	20	1	3.00	2.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTCA.........................................................................................................................	25	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGATAGAGAAATTGTTGTCT...........................................................................................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTT..........................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTCT.............................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAACTGTTGTCC...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGGTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAAGTAGAGAAATTGTTGTCC...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGAAGAGAAATTGTTGTCC...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTxTTGTCT...........................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGGCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTT............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTACAGAAATTGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGGAGAGAAATTGTTGT.............................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................CTAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCTCCT---.....................................................................................................................	26	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................ATAAGGGAGAGAAATTGTTGTCC...........................................................................................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
..................................................ATAAAGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00

droMoj3

G---------------------------------TAGAGCG-CTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCA----TATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AA--TGCAGCA--------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................................ATAAGGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	14832.00	14599.00	144.00	89.00	0.00
..................................................ATAAGGTAGAGATATTGTTGT.............................................................................................................................	21	1	1999.00	1866.00	87.00	46.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTC............................................................................................................................	22	1	1347.00	1321.00	17.00	9.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTC..........................................................................................................................	24	1	859.00	847.00	9.00	3.00	0.00
...................................................TAAGGTAGAGATATTGTTGTCT...........................................................................................................................	22	1	508.00	498.00	6.00	4.00	0.00
...................................................TAAGGTAGAGATATTGTTGTCTTC.........................................................................................................................	24	1	298.00	298.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTTC.........................................................................................................................	25	1	129.00	129.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCC...........................................................................................................................	23	1	117.00	117.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTG..............................................................................................................................	20	1	108.00	93.00	12.00	3.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTT..........................................................................................................................	24	1	87.00	83.00	2.00	2.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTCC.........................................................................................................................	25	1	82.00	81.00	1.00	0.00	0.00
..................................................ATAAGGGAGAGATATTGTTGTCT...........................................................................................................................	23	1	65.00	63.00	0.00	2.00	0.00
...................................................TAAGGTAGAGATATTGTTGTCTT..........................................................................................................................	23	1	63.00	61.00	2.00	0.00	0.00
...................................................TAAGGTAGAGATATTGTTGTC............................................................................................................................	21	1	52.00	51.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTTTC........................................................................................................................	26	1	34.00	34.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTCT.........................................................................................................................	25	1	31.00	30.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTTT.........................................................................................................................	25	1	31.00	29.00	2.00	0.00	0.00
...................................................TAAGGTAGAGATATTGTTGTCTTT.........................................................................................................................	24	1	27.00	27.00	0.00	0.00	0.00
...................................................TAAGGTAGAGATATTGTTGTCTTTC........................................................................................................................	25	1	26.00	26.00	0.00	0.00	0.00
..................................................ATAAGGCAGAGATATTGTTGTCT...........................................................................................................................	23	1	26.00	24.00	1.00	1.00	0.00
..................................................ATAAGGGAGAGATATTGTTGT.............................................................................................................................	21	1	18.00	18.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCA...........................................................................................................................	23	1	16.00	15.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTCA.........................................................................................................................	25	1	16.00	15.00	1.00	0.00	0.00
..................................................ATAAGGAAGAGATATTGTTGTCT...........................................................................................................................	23	1	16.00	15.00	1.00	0.00	0.00
...................................................TAAGGTAGAGATATTGTTGTCTTCC........................................................................................................................	25	1	16.00	16.00	0.00	0.00	0.00
..................................................ATAAGGTxxAGATATTGTTGTCT...........................................................................................................................	21	1	16.00	16.00	0.00	0.00	0.00
..................................................ATAAGTTAGAGATATTGTTGTCT...........................................................................................................................	23	1	15.00	15.00	0.00	0.00	0.00
...................................................TAAGGTAGAGATATTGTTGT.............................................................................................................................	20	1	14.00	12.00	2.00	0.00	0.00
...................................................TAAGGTAGAGATATTGTTGTCTC..........................................................................................................................	23	1	14.00	13.00	0.00	1.00	0.00
..................................................ATAAGGTGGAGATATTGTTGTCT...........................................................................................................................	23	1	12.00	11.00	0.00	1.00	0.00
..................................................ATAAGGTAGGGATATTGTTGTCT...........................................................................................................................	23	1	12.00	12.00	0.00	0.00	0.00
..................................................ATAAGGTAGATATATTGTTGTCT...........................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGGTATTGTTGTCT...........................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00
..................................................ATAGGGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00
..................................................ATAAGGTATAGATATTGTTGTCT...........................................................................................................................	23	1	11.00	11.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTTTCT...........................................................................................................................	23	1	11.00	7.00	0.00	4.00	0.00
..................................................ATAATGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	10.00	10.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGC.............................................................................................................................	21	1	9.00	9.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTAT...........................................................................................................................	23	1	9.00	8.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTCTCT...........................................................................................................................	23	1	9.00	8.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGATATTATTGTCT...........................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00
..................................................ATAAGGCAGAGATATTGTTGT.............................................................................................................................	21	1	9.00	8.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGACATTGTTGTCT...........................................................................................................................	23	1	9.00	9.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGCCT...........................................................................................................................	23	1	8.00	6.00	2.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTCGTCT...........................................................................................................................	23	1	8.00	8.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTA..........................................................................................................................	24	1	7.00	7.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTCT.............................................................................................................................	21	1	7.00	7.00	0.00	0.00	0.00
..................................................ATAAGGGAGAGATATTGTTGTC............................................................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
..................................................ATAAGGCAGAGATATTGTTGTC............................................................................................................................	22	1	7.00	6.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTATCT...........................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGxxATTGTTGTCT...........................................................................................................................	21	1	7.00	7.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTCTTGTCT...........................................................................................................................	23	1	7.00	7.00	0.00	0.00	0.00
..................................................ACAAGGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	6.00	6.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTTTTGTCT...........................................................................................................................	23	1	6.00	6.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTTCC........................................................................................................................	26	1	6.00	6.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTT............................................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
..................................................ATAAGGTxxAGATATTGTTGT.............................................................................................................................	19	1	6.00	6.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTTCT..........................................................................................................................	24	1	6.00	6.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGCTGTCT...........................................................................................................................	23	1	6.00	5.00	1.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTTT...........................................................................................................................	23	1	5.00	3.00	2.00	0.00	0.00
..................................................ATAAGGTAGATATATTGTTGT.............................................................................................................................	21	1	5.00	5.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATACTGTTGTCT...........................................................................................................................	23	1	5.00	4.00	1.00	0.00	0.00
..................................................ATAAGATAGAGATATTGTTGTCT...........................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTxTTGTCT...........................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATATTTGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................ATACGGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	4.00	3.00	0.00	1.00	0.00
...................................................TAAGGTAGAGATATTGTTGTCC...........................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCCC..........................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAACGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	4.00	3.00	1.00	0.00	0.00
...................................................TAAGGTAGAGATATTGTTGTCTTCA........................................................................................................................	25	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATGTTGTTGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................TTAAGGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGGTATAGATATTGTTGTC............................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................CTAAGGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
.................................................CATAAGGTAGAGATATTGTTGTCT...........................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGGTAGACATATTGTTGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGGAAGAGATATTGTTGTC............................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGGTAGGGATATTGTTGT.............................................................................................................................	21	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGGTATAGATATTGTTGT.............................................................................................................................	21	1	4.00	4.00	0.00	0.00	0.00
..................................................GTAAGGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................ATAAGGTAAAGATATTGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGTTATTGTTGTCT...........................................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
..................................................ATAAGGTAGTGATATTGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTC...............................................................................................................................	19	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTGGAGATATTGTTGT.............................................................................................................................	21	1	3.00	2.00	0.00	1.00	0.00
..................................................ATAAGTTAGAGATATTGTTGT.............................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTTTT........................................................................................................................	26	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTTGTCTTTCT.......................................................................................................................	27	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGTT...............................................................................................................................	19	1	3.00	2.00	0.00	1.00	0.00
..................................................ATAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATAxTGTTGTCT...........................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGCGATATTGTTGTCT...........................................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
..................................................ATAAAGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAAAAATTGTTGTC............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTGGAGATATTGTTGTC............................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTGxTGTCT...........................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................ATAAGGTAGAGATATTTGT...............................................................................................................................	19	1	3.00	3.00	0.00	0.00	0.00

droGri2

ACTAAGAGCAGGTTACTTTCATAACACACTC---AAGAGCT-CTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA---------------A----AAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AA--TGCAACGG-------------------------------------------	Size	Hit Count	Total Norm	V109 Male body
..................................................ATAAGGTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	1200.00	1200.00
..................................................ATAAGGTAGAGATTTTGTTGT.............................................................................................................................	21	1	275.00	275.00
..................................................ATAAGGTAGAGATTTTGTTGTC............................................................................................................................	22	1	97.00	97.00
..................................................ATAAGGTAGAGAAATTGTTGTCT...........................................................................................................................	23	1	21.00	21.00
..................................................ATAAGGTAGAGATTTTGCTGTCT...........................................................................................................................	23	1	13.00	13.00
..................................................ATAAGGTAGAGATTTTGATGTCT...........................................................................................................................	23	1	11.00	11.00
..................................................ATAAGGTAGAGATATTGTTGTCT...........................................................................................................................	23	1	10.00	10.00
..................................................ATAAGGTAGAGATTTTGTTGTCC...........................................................................................................................	23	1	8.00	8.00
..................................................ATAAGGTACAGATTTTGTTGTCT...........................................................................................................................	23	1	5.00	5.00
..................................................GTAAGGTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	5.00	5.00
..................................................ATAAGGTAGAGATTTTGTTG..............................................................................................................................	20	1	5.00	5.00
..................................................ATAAGGTAGAGATTTTGTTGTCG...........................................................................................................................	23	1	5.00	5.00
..................................................ATAAGGTAGAGCTTTTGTTGTCT...........................................................................................................................	23	1	4.00	4.00
..................................................ATAAGGTAGAGATTTTGCTGT.............................................................................................................................	21	1	4.00	4.00
..................................................ATAAGGTAGAGATTTTGGTGTCT...........................................................................................................................	23	1	3.00	3.00
..................................................ATAAGGTAGCGATTTTGTTGT.............................................................................................................................	21	1	3.00	3.00
...................................................TAAGGTAGAGATTTTGTTGTCT...........................................................................................................................	22	1	3.00	3.00
..................................................ATAAGGTACAGATTTTGTTGT.............................................................................................................................	21	1	3.00	3.00
..................................................ATAAGGTATAGATTTTGTTGTCT...........................................................................................................................	23	1	3.00	3.00
..................................................ATAAGGTAGAGATTTTGTTGTA............................................................................................................................	22	1	2.00	2.00
..................................................ATAAGGTAGAGATTTTGATGTC............................................................................................................................	22	1	2.00	2.00
..................................................ATCAGGTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	2.00	2.00
..................................................ATAAGGTAGAGATTTTGTTGTCA...........................................................................................................................	23	1	2.00	2.00
..................................................ATAAGGTAGAGATTTTGGTGT.............................................................................................................................	21	1	2.00	2.00
..................................................ATAAGGCAGAGATTTTGTTGTCT...........................................................................................................................	23	1	2.00	2.00
..................................................ATAAGGTATAGATTTTGTTGT.............................................................................................................................	21	1	2.00	2.00
..................................................ATAAGCTAGAGATTTTGTTGT.............................................................................................................................	21	1	2.00	2.00
..................................................ATAAGGCAGAGATTTTGTTGT.............................................................................................................................	21	1	2.00	2.00
..................................................ATAAGGTAAAGATTTTGTTGTCT...........................................................................................................................	23	1	2.00	2.00
..................................................ATAAGCTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	2.00	2.00
..................................................ATTAGGTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	2.00	2.00
..................................................ATAAGGTAGAGATTTTTTTGTCT...........................................................................................................................	23	1	2.00	2.00
..................................................AAAAGGTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	2.00	2.00
..................................................ATAGGGTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	2.00	2.00
..................................................ATAAGTTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	2.00	2.00
..................................................ATAAGGTAGAGAAATTGTTGTC............................................................................................................................	22	1	2.00	2.00
..................................................ATAAGTTAGAGATTTTGTTGT.............................................................................................................................	21	1	2.00	2.00
..................................................ATAAGGTAGAGATTTTGATGT.............................................................................................................................	21	1	2.00	2.00
..................................................ATAAGGTAGAGATTCTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTCT..............................................................................................................................	20	1	1.00	1.00
..................................................ATAAxGTAGAGATTTTGTTGT.............................................................................................................................	20	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTTGACC...........................................................................................................................	23	1	1.00	1.00
..................................................ATTAGGTAGAGATTTTCTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGACATTTTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGGAGAGATTTTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTCGAGATTTTCTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................GTAAGGTAGAGATTTTGTTGTCC...........................................................................................................................	23	1	1.00	1.00
..................................................ATACGGTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGGAGAGATTTTGGTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAACGTAGAGATTTTGTTGTC............................................................................................................................	22	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTCGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTTTTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAAGTAGAGATTTTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTTGTCTT..........................................................................................................................	24	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTTATCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGAGATTTCGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATACGGTAGAGATTTTGTTGTC............................................................................................................................	22	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGxTGTCT...........................................................................................................................	22	1	1.00	1.00
..................................................ATAAGGTATAGATTTTGTTGTC............................................................................................................................	22	1	1.00	1.00
..................................................ATAAGGTGGAGATTTTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGAAGAGATTTTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTCGT.............................................................................................................................	21	1	1.00	1.00
..................................................ATCAGGTAGAGATTTTGTTGTC............................................................................................................................	22	1	1.00	1.00
..................................................ATAAGGTxxAGATTTTGTTGTCT...........................................................................................................................	21	1	1.00	1.00
..................................................ATAAGGTAGAGACTTTGTTGT.............................................................................................................................	21	1	1.00	1.00
..................................................ATAAGGTGGAGATTTTGTTGTC............................................................................................................................	22	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTTGTAT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGCTAGAGATTTTGATGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGATATTTTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGCTGTAT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTCTTGTCT...........................................................................................................................	23	1	1.00	1.00
...................................................TAAGGTAGAGATTTTGTTGTCTT..........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGAGATTTCGTTGT.............................................................................................................................	21	1	1.00	1.00
..................................................ATAAGGTAGGGATTTTGTTGT.............................................................................................................................	21	1	1.00	1.00
..................................................ATAAGGTAGAGATATTGCTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTTGTTCT..........................................................................................................................	24	1	1.00	1.00
..................................................ATAAGGAAGAGATTTTGTTG..............................................................................................................................	20	1	1.00	1.00
..................................................ATAAGGTAGAGATATTGTTGTCTTT.........................................................................................................................	25	1	1.00	1.00
..................................................ATAAGGTAGAGACTTTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAAAGATTTTGTTGTC............................................................................................................................	22	1	1.00	1.00
..................................................ATAAGGTCGAGATTTTGTTGT.............................................................................................................................	21	1	1.00	1.00
..................................................ATAAGGTGTAGATTTTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGATAGAGATTTTGTTGTCT...........................................................................................................................	23	1	1.00	1.00
...................................................TAAGGTAGAGATATTGTTGTCT...........................................................................................................................	22	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTAGTCT...........................................................................................................................	23	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTTTTGT.............................................................................................................................	21	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGTTGCCT...........................................................................................................................	23	1	1.00	1.00
...................................................TAAGGTAGAGATATTGTTGTCTTC.........................................................................................................................	24	1	1.00	1.00
..................................................ATAAGGTAGAGAAATTGTTG..............................................................................................................................	20	1	1.00	1.00
..................................................ATAAGGTAGAGATTTTGGTGTC............................................................................................................................	22	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image