dme-mir-927- Best orthologs

dme-mir-927	chrX:15859980-15860071 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 15860035-15860056
   star strand at position 15859995-15860016
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chrX:15859965-15860086 -		1	GGCA----ATATTAAAT---------------------TGTGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCAT--------GTTAAAA-----AAA----A
droSim1	chrX:12269402-12269519 -	LASTZ	1	AGCC----ATATTAAAT---------------------TGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT--------GTTATTA-------------
droSec1	super_37:439539-439656 -	LASTZ	1	GGCA----ATATTAAAT---------------------TGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT--------GTTATTA-------------
droYak2	chrX:10049094-10049217 -	LASTZ	1	GGCA----GTTAAAAAT---------------------TGTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACCAT--ATTATT-------------A
droEre2	scaffold_4690:11188754-11188871 +	LASTZ	1	GGCA----ATAATAAAT---------------------TGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCAT--------ATTATTA-------------
droEug1	scf7180000409111:14061-14198 +	LASTZ	4	AGAACTATATATTAAATTGTTATAAATG-------CAGC-TGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAAGTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCGTTATCTT--------TTTATTA------AC----A
droBia1	scf7180000302126:1157191-1157325 +	LASTZ	4	CGAT----ATGTTAAATTGTTAAAAACA-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCCC--------TTGATTA------AC----A
droTak1	scf7180000415169:54687-54821 +	LASTZ	4	GTGG----GTATCAAATTGTTATAAATG-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCTT--------TTAATTA------AC----A
droEle1	scf7180000491044:230803-230920 +	LASTZ	4	GCTT----G--------------------------CACCTTGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAGTCCATTATCTT--------TTTATTC-----AAA----A
droRho1	scf7180000777033:165059-165189 +	LASTZ	4	TACA----A----------------ATGCGGCTTGCACCTTGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAATCCATTATCTT--------TTTATTAACAA-TAA----A
droFic1	scf7180000454038:1133641-1133743 -	LASTZ	4	C-------------------------------------TTTGGGTATTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCTT--------TTT-----------------
droKik1	scf7180000302230:275958-276095 -	LASTZ	4	CTAT----ATATT-----CTCATGAATTGGGCA--AGTCTGGGGCGTTGTAGGGCTTTAGAATTCCTACGCTTTACCGTGGCA-TTCGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGCGTCCGTGAGTAAAGAAAA--TT---T------GAA----A
droAna3	scaffold_13250:3108664-3108783 +	LASTZ	1	TAAA----A-----------------------------AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAATGTGTTTTCA------T-AAA----T
droBip1	scf7180000393580:5789-5909 -	LASTZ	4	AAAA----GTAACCAGA---------------------AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGC--TATGATATTTGGCAAAGCGTTTGGATTCTGGAACCCTACGTATTCATTTTTTT--------GTAAAAA-----GGG----A
dp4	Unknown_group_79:17437-17552 +	LASTZ	1	ATAG----ATAGA----------------------TAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTCA-------------------ACAAA----A
droPer1	super_192:48564-48679 +	LASTZ	1	ATAG----ATAGA----------------------TAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTCA-------------------ACAAA----A
droWil1	scaffold_180777:2521614-2521709 -	LASTZ	1	CACA----ATCTGACAT---------------------T--------GGTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCA-----------------------------------
droVir3	scaffold_12970:3343518-3343635 -	LASTZ	1	AACT----TTT---AAT---------------------AATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTCGGTAACA-------------------ACAAAAACAG
droMoj3	scaffold_6473:7790778-7790858 -	LASTZ	1	----------------------------------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATA-------------------------------------------
droGri2	scaffold_15203:10526906-10527015 +	LASTZ	1	GATA----GTAGTTTAC---------------------CGTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTGGTCAGAA-------------------------AC----A

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	GGCA----ATATTAAAT---------------------TGTGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCAT--------GTTAAAA-----AAA----A
droSim1	AGCC----ATATTAAAT---------------------TGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT--------GTTATTA-------------
droSec1	GGCA----ATATTAAAT---------------------TGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT--------GTTATTA-------------
droYak2	GGCA----GTTAAAAAT---------------------TGTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACCAT--ATTATT-------------A
droEre2	GGCA----ATAATAAAT---------------------TGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCAT--------ATTATTA-------------
droEug1	AGAACTATATATTAAATTGTTATAAATG-------CAGC-TGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAAGTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCGTTATCTT--------TTTATTA------AC----A
droBia1	CGAT----ATGTTAAATTGTTAAAAACA-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCCC--------TTGATTA------AC----A
droTak1	GTGG----GTATCAAATTGTTATAAATG-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCTT--------TTAATTA------AC----A
droEle1	GCTT----G--------------------------CACCTTGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAGTCCATTATCTT--------TTTATTC-----AAA----A
droRho1	TACA----A----------------ATGCGGCTTGCACCTTGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAATCCATTATCTT--------TTTATTAACAA-TAA----A
droFic1	C-------------------------------------TTTGGGTATTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCTT--------TTT-----------------
droKik1	CTAT----ATATT-----CTCATGAATTGGGCA--AGTCTGGGGCGTTGTAGGGCTTTAGAATTCCTACGCTTTACCGTGGCA-TTCGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGCGTCCGTGAGTAAAGAAAA--TT---T------GAA----A
droAna3	TAAA----A-----------------------------AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAATGTGTTTTCA------T-AAA----T
droBip1	AAAA----GTAACCAGA---------------------AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGC--TATGATATTTGGCAAAGCGTTTGGATTCTGGAACCCTACGTATTCATTTTTTT--------GTAAAAA-----GGG----A
dp4	ATAG----ATAGA----------------------TAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTCA-------------------ACAAA----A
droPer1	ATAG----ATAGA----------------------TAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTCA-------------------ACAAA----A
droWil1	CACA----ATCTGACAT---------------------T--------GGTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCA-----------------------------------
droVir3	AACT----TTT---AAT---------------------AATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTCGGTAACA-------------------ACAAAAACAG
droMoj3	----------------------------------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATA-------------------------------------------
droGri2	GATA----GTAGTTTAC---------------------CGTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTGGTCAGAA-------------------------AC----A

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

AGCC----ATATTAAAT---------------------TGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT--------GTTATTA-------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	2	28904.00	76.00	27632.00	219.50	976.50
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	2	3835.00	10.00	3230.50	55.00	539.50
................................................................................................CAAAGCGTTTGGATTCTGAAA................................................	21	2	2744.00	0.50	2512.50	52.00	179.00
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	2	2112.00	3.00	2076.00	10.00	23.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAA................................................	22	2	885.00	1.00	692.50	20.00	171.50
.......................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................	23	2	680.50	5.50	632.50	6.50	36.00
................................................................................................CAAAGCGTTTGGATTCTGAAACA..............................................	23	2	528.50	5.50	472.50	11.00	39.50
................................................................................................CAAAGCGTTTGGATTCTGAAAA...............................................	22	2	405.50	0.00	387.50	5.50	12.50
................................................................................................CAAAGCGTTTGGATTCTGAA.................................................	20	2	279.00	0.00	260.00	4.50	14.50
...............................................................................................GCAAAGCGTTTGGATTCTGAA.................................................	21	2	129.00	0.00	118.00	2.50	8.50
................................................................................................CAAAGCGTTTGGATTCTGAAACT..............................................	23	2	113.50	0.50	103.00	1.50	8.50
...............................................................................................GCAAAGCGTTTGGATTCTGAAAC...............................................	23	2	91.50	0.00	65.50	0.50	25.50
.......................................................TTTAGAATTCCTACGCTTT...........................................................................................	19	2	76.00	0.00	75.50	0.50	0.00
................................................................................................CAAAGCGTTTGGATTCTGA..................................................	19	2	72.50	0.00	71.00	0.00	1.50
.......................................................TTTAGAATTCCTACGCTTTGCC........................................................................................	22	2	53.50	1.00	50.50	0.50	1.50
.......................................................TTTAGAATTCCTACGCTTTA..........................................................................................	20	2	43.00	0.00	43.00	0.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACCT.......................................................................................	23	2	38.50	0.00	38.50	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAAAA..............................................	23	2	37.00	0.00	35.00	0.50	1.50
.......................................................TTTAGAATTCCTACGCTT............................................................................................	18	2	30.00	0.00	30.00	0.00	0.00
.......................................................TTTAGAATTTCTACGCTTTACC........................................................................................	22	2	27.50	0.00	27.00	0.00	0.50
.......................................................TTTAGAATTCTTACGCTTTACC........................................................................................	22	2	27.00	0.00	25.50	0.00	1.50
.......................................................TTTAGAATTCCTACGCCTTACC........................................................................................	22	2	27.00	0.00	26.50	0.00	0.50
...............................................................................................GCAAAGCGTTTGGATTCTGA..................................................	20	2	24.50	0.00	24.50	0.00	0.00
.......................................................TTTAGAATTCCCACGCTTTACC........................................................................................	22	2	21.00	0.00	20.50	0.00	0.50
.......................................................TTTAGAATTCCTACTCTTTACC........................................................................................	22	2	21.00	0.00	16.50	0.50	4.00
................................................................................................CAAAGCGTTTGGATTCTTAAAC...............................................	22	2	19.00	0.00	16.00	0.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGAAACC..............................................	23	2	18.00	0.00	16.00	0.00	2.00
.......................................................TTTAGAATTCCTACGCTTACC.........................................................................................	21	2	17.50	0.00	17.00	0.00	0.50
.......................................................TTTAGAATTCCTACCCTTTACC........................................................................................	22	2	17.00	0.00	16.50	0.00	0.50
.......................................................TTTAGAATCCCTACGCTTTACC........................................................................................	22	2	16.50	0.00	15.50	0.00	1.00
................................................................................................CAAAGCGTTTGGATTCTGAAACAA.............................................	24	2	16.50	0.00	13.50	1.00	2.00
.......................................................TTTAGAATTCCTACGCTTTAAC........................................................................................	22	2	15.50	0.50	15.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTT...................................................	18	2	15.50	0.00	15.50	0.00	0.00
.......................................................TTTAGAATTxCTACGCTTTACC........................................................................................	21	2	15.50	0.00	15.50	0.00	0.00
.......................................................CTTAGAATTCCTACGCTTTACC........................................................................................	22	2	14.50	0.00	13.00	0.00	1.50
........................................................TTAGAATTCCTACGCTTTACC........................................................................................	21	2	14.00	0.00	13.50	0.50	0.00
.............................................................................GTGGCA-TACGAAATTCGG.....................................................................	18	2	13.50	8.50	2.00	0.00	3.00
.......................................................TTTAGAATTCCTACACTTTACC........................................................................................	22	2	13.50	0.00	12.00	0.00	1.50
.......................................................TTTAGAATTCCTACGCTTTACT........................................................................................	22	2	12.50	0.00	11.00	1.00	0.50
.......................................................TTTAGAGTTCCTACGCTTTACC........................................................................................	22	2	12.00	0.00	11.50	0.00	0.50
........................................................TTAGAATTCCTACGCTTTACCG.......................................................................................	22	2	11.50	0.00	11.00	0.00	0.50
.......................................................TTTAGAATTACTACGCTTTACC........................................................................................	22	2	11.00	0.50	10.00	0.00	0.50
.......................................................TTTAGAATTCCTACGCTTTACCA.......................................................................................	23	2	11.00	0.00	10.00	0.00	1.00
................................................................................................CAAAGCTTTTGGATTCTGAAA................................................	21	2	11.00	0.00	11.00	0.00	0.00
................................................................................................CAAAGCGTTTGTATTCTGAAAC...............................................	22	2	10.50	0.00	8.50	0.50	1.50
.......................................................TTTAGAATTCCTGCGCTTTACC........................................................................................	22	2	10.50	0.00	10.00	0.50	0.00
.......................................................TTTAAAATTCCTACGCTTTACC........................................................................................	22	2	9.50	0.00	9.00	0.50	0.00
................................................................................................CAAAGCGTTTGGATTCTGG..................................................	19	2	9.50	0.00	9.50	0.00	0.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAAA...............................................	23	2	9.50	0.00	9.50	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAACG..............................................	23	2	9.00	0.00	7.50	0.00	1.50
................................................................................................CAAAGCGTTTGGATTCTAAAAC...............................................	22	2	8.50	0.00	6.50	0.00	2.00
.......................................................TTTAGAATTCCTACGCTTTACA........................................................................................	22	2	8.00	0.00	7.50	0.00	0.50
................................................................................................CAAGGCGTTTGGATTCTGAAAC...............................................	22	2	8.00	0.00	7.50	0.00	0.50
.......................................................TTTAGAATTCCTATGCTTTACC........................................................................................	22	2	8.00	0.00	7.50	0.00	0.50
.......................................................TTTAGAATTCCTACGCTTTATC........................................................................................	22	2	8.00	0.00	8.00	0.00	0.00
.......................................................TTTAGAACTCCTACGCTTTACC........................................................................................	22	2	7.50	0.00	7.00	0.00	0.50
................................................................................................CAAAGCGTTTCGATTCTGAAAC...............................................	22	2	7.50	0.00	7.00	0.00	0.50
................................................................................................CAAAGCGTTTGGATTCTGAAG................................................	21	2	7.50	0.00	7.00	0.00	0.50
.......................................................TTTAGAATTCCTACGATTTACC........................................................................................	22	2	7.00	0.50	6.50	0.00	0.00
.................................................................................................AAAGCGTTTGGATTCTGAAAC...............................................	21	2	7.00	0.00	7.00	0.00	0.00
.......................................................TTTAGAATTGCTACGCTTTACC........................................................................................	22	2	7.00	0.50	6.50	0.00	0.00
.......................................................TTTAGAATTCCTAAGCTTTACC........................................................................................	22	2	6.50	0.00	6.50	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAT................................................	21	2	6.50	0.00	6.50	0.00	0.00
.......................................................TTTAGGATTCCTACGCTTTACC........................................................................................	22	2	6.50	0.00	6.50	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAAT...............................................	22	2	6.50	0.00	6.50	0.00	0.00
.......................................................TTTAGAATTCGTACGCTTTACC........................................................................................	22	2	6.00	0.00	5.50	0.00	0.50
.......................................................TTTGGAATTCCTACGCTTTACC........................................................................................	22	2	6.00	0.50	5.50	0.00	0.00
.......................................................TTTAGAATTCCTACxCTTTACC........................................................................................	21	2	6.00	0.00	6.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTAAAC................................................	21	2	6.00	0.00	5.50	0.00	0.50
.......................................................TTTAGAATTCCTACGCTTTGC.........................................................................................	21	2	6.00	0.00	6.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAGC...............................................	22	2	5.50	0.00	4.50	0.00	1.00
................................................................................................CAAAGCGTTTGGATTCTCAAAC...............................................	22	2	5.50	0.00	5.00	0.00	0.50
................................................................................................CAAAGCTTTTGGATTCTGAAAC...............................................	22	2	5.50	0.00	5.50	0.00	0.00
.......................................................TTTAGAATTCCTACxCTTTAC.........................................................................................	20	2	5.50	0.00	5.50	0.00	0.00
...............................................................................................GCAAAGCGTTTGGATTCTG...................................................	19	2	5.00	0.00	5.00	0.00	0.00
.......................................................TTTAGAATTCCTACCCTTTAC.........................................................................................	21	2	5.00	0.00	5.00	0.00	0.00
..................................................................................................AAGCGTTTGGATTCTGAAAC...............................................	20	2	5.00	0.00	4.50	0.50	0.00
................................................................................................CAAGGCGTTTGGATTCTGAAA................................................	21	2	5.00	0.00	5.00	0.00	0.00
...................................................................................................AGCGTTTGGATTCTGAAAC...............................................	19	2	5.00	0.00	5.00	0.00	0.00
...................................................................................................AGCGTTTGGATTCTGAAA................................................	18	2	5.00	0.00	5.00	0.00	0.00
.......................................................TCTAGAATTCCTACGCTTTACC........................................................................................	22	2	5.00	0.00	5.00	0.00	0.00
.......................................................TTTAGAATTCCTACGCTCTACC........................................................................................	22	2	4.50	0.50	3.50	0.00	0.50
.......................................................TTTAGAATTCCTACGCTTTAA.........................................................................................	21	2	4.50	0.00	4.50	0.00	0.00
................................................................................................CAAAGCGTTTTGATTCTGAAAC...............................................	22	2	4.50	0.00	3.00	0.00	1.50
................................................................................................CAAAGCGGTTGGATTCTGAAA................................................	21	2	4.50	0.00	4.00	0.50	0.00
................................................................................................CAAAGCGTTTGGATTCTGAT.................................................	20	2	4.50	0.00	4.50	0.00	0.00
.......................................................TTTAGAATTCCTACGCTTCACC........................................................................................	22	2	4.50	0.00	4.50	0.00	0.00
................................................................................................CAAAGCGTCTGGATTCTGAAAC...............................................	22	2	4.50	0.00	4.00	0.00	0.50
................................................................................................CAAAGCGTTTGGATTCTG...................................................	18	2	4.50	0.00	4.50	0.00	0.00
......................................................CTTTAGAATTCCTACGCTTTACC........................................................................................	23	2	4.50	1.00	3.00	0.00	0.50
.................................................................................................AAAGCGTTTGGATTCTGAAA................................................	20	2	4.00	0.00	3.00	1.00	0.00
................................................................................................TAAAGCGTTTGGATTCTGAAAC...............................................	22	2	4.00	0.00	3.50	0.00	0.50
................................................................................................CAAAGCGxTTGGATTCTGAAAC...............................................	21	2	4.00	0.00	3.50	0.50	0.00
....................................................................................................GCGTTTGGATTCTGAAAC...............................................	18	2	4.00	0.00	4.00	0.00	0.00
...............................................................................................TCAAAGCGTTTGGATTCTGAAAC...............................................	23	2	4.00	0.00	1.50	0.00	2.50
.......................................................TTTAGAATTCCTACGGTTTACC........................................................................................	22	2	3.50	0.00	3.50	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTAAAA................................................	21	2	3.50	0.50	2.00	0.00	1.00
.......................................................TTTAGAATTCCTACTCTTTAC.........................................................................................	21	2	3.50	0.00	3.50	0.00	0.00
.......................................................GTTAGAATTCCTACGCTTTACC........................................................................................	22	2	3.50	0.00	3.50	0.00	0.00
................................................................................................CAAAGCGGTTGGATTCTGAAAC...............................................	22	2	3.50	0.00	3.50	0.00	0.00

droSec1

GGCA----ATATTAAAT---------------------TGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT--------GTTATTA-------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	2	548.00	13.00	42.00	493.00
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	2	360.50	28.00	114.50	218.00
................................................................................................CAAAGCGTTTGGATTCTGAAACA..............................................	23	2	182.50	11.50	35.50	135.50
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	2	80.00	0.50	0.50	79.00
................................................................................................CAAAGCGTTTGGATTCTGAAA................................................	21	2	73.50	10.00	8.50	55.00
.......................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................	23	2	56.50	0.00	6.50	50.00
................................................................................................CAAAGCGTTTGGATTCTGA..................................................	19	2	25.50	2.00	0.00	23.50
................................................................................................CAAAGCGTTTGGATTCTGAA.................................................	20	2	19.50	0.50	1.50	17.50
...............................................................................................GCAAAGCGTTTGGATTCTGAAA................................................	22	2	18.00	2.00	5.50	10.50
...............................................................................................GCAAAGCGTTTGGATTCTGAAAC...............................................	23	2	16.00	0.50	11.50	4.00
................................................................................................CAAAGCGTTTGGATTCTGAAAA...............................................	22	2	14.00	0.50	2.50	11.00
................................................................................................CAAAGCGTTTGGATTCTGAAACT..............................................	23	2	11.50	0.00	2.00	9.50
.............................................................................GTCGCA-TACGAAATTCGG.....................................................................	18	2	9.00	0.00	5.00	4.00
.......................................................TTTAGAATTCCTACGCTTTA..........................................................................................	20	2	7.50	0.50	0.00	7.00
...............................................................................................GCAAAGCGTTTGGATTCTGA..................................................	20	2	7.00	1.50	0.50	5.00
................................................................................................CAAAGCGTTTGGATTCTG...................................................	18	2	6.50	0.00	0.00	6.50
.......................................................TTTAGAATTCCTACGCTTTACCGT......................................................................................	24	2	6.00	0.00	0.00	6.00
...............................................................................................GCAAAGCGTTTGGATTCTGAA.................................................	21	2	6.00	0.50	0.50	5.00
.................................................................................................AAAGCGTTTGGATTCTGAAAC...............................................	21	2	5.00	0.00	2.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGT..................................................	19	2	5.00	0.50	0.00	4.50
................................................................................................CAAAGCGTTTGGATTCTGAAAAA..............................................	23	2	4.00	0.50	0.00	3.50
...A----ATATTAAAT---------------------TATGGAAG.......................................................................................................................	18	1	8.00	0.00	7.00	1.00
.......................................................TTTAGAATTCCTGCGCTTTACC........................................................................................	22	2	3.00	0.50	0.00	2.50
................................................................................................CAAAGCGTTTGGATTCTAAAAC...............................................	22	2	2.00	0.00	0.50	1.50
...............................................................................................GCAAAGCGTTTGGATTCTG...................................................	19	2	2.00	0.00	0.00	2.00
.......................................................TTTAGAATTCCTATGCTTTACC........................................................................................	22	2	2.00	0.00	1.00	1.00
................................................................................................CAAAGCGTTTGGATTCTGAAACG..............................................	23	2	2.00	0.50	0.50	1.00
.......................................................TTTAGAATCCCTACGCTTTACC........................................................................................	22	2	1.50	0.00	0.00	1.50
..............AAT---------------------TGTGGATGCTGTAGAGT..............................................................................................................	20	2	1.50	0.00	0.00	1.50
.......................................................ATTAGAATTCCTACGCTTTACC........................................................................................	22	2	1.50	0.00	0.00	1.50
......................................................CTTTAGAATTCCTACGCTTTACC........................................................................................	23	2	1.50	0.00	0.00	1.50
.......................................................TTTAGAATTCCTACGCTTCACC........................................................................................	22	2	1.50	0.00	0.00	1.50

droYak2

GGCA----GTTAAAAAT---------------------TGTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACCAT--ATTATT-------------A	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	1	12041.00	74.00	109.00	16.00	266.00	11576.00
................................................................................................CAAAGCGTTTGGATTCTGAAA................................................	21	1	1994.00	2.00	15.00	13.00	67.00	1897.00
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	1	1940.00	13.00	36.00	43.00	136.00	1712.00
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	1	1077.00	2.00	14.00	1.00	42.00	1018.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAA................................................	22	1	872.00	0.00	1.00	3.00	4.00	864.00
.......................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................	23	1	398.00	11.00	6.00	0.00	8.00	373.00
................................................................................................CAAAGCGTTTGGATTCTGAAACT..............................................	23	1	367.00	0.00	3.00	5.00	17.00	342.00
................................................................................................CAAAGCGTTTGGATTCTGAAACA..............................................	23	1	354.00	6.00	11.00	23.00	46.00	268.00
................................................................................................CAAAGCGTTTGGATTCTGAA.................................................	20	1	249.00	0.00	6.00	2.00	14.00	227.00
................................................................................................CAAAGCGTTTGGATTCTGAAAA...............................................	22	1	218.00	0.00	3.00	2.00	4.00	209.00
................................................................................................CAAAGCGTTTGGATTCTGA..................................................	19	1	115.00	0.00	2.00	3.00	9.00	101.00
...............................................................................................GCAAAGCGTTTGGATTCTGAA.................................................	21	1	115.00	0.00	1.00	0.00	1.00	113.00
.............................................................................GTCGCA-TACGAAATTCGG.....................................................................	18	1	82.00	2.00	1.00	0.00	1.00	78.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAAC...............................................	23	1	40.00	0.00	1.00	0.00	1.00	38.00
.......................................................TTTAGAATTCCTACGCTTTGCC........................................................................................	22	1	30.00	0.00	0.00	0.00	1.00	29.00
.......................................................TTTAGAATTCCTACGCTTTAAC........................................................................................	22	1	27.00	0.00	0.00	0.00	0.00	27.00
.......................................................TTTAGAATTCCTACGCTTTACCT.......................................................................................	23	1	26.00	0.00	0.00	0.00	1.00	25.00
.......................................................TTTAGAATTCTTACGCTTTACC........................................................................................	22	1	23.00	0.00	0.00	0.00	0.00	23.00
...............................................................................................GCAAAGCGTTTGGATTCTGA..................................................	20	1	20.00	0.00	0.00	0.00	2.00	18.00
.......................................................TTTAGAATTCCTACGCTTT...........................................................................................	19	1	18.00	0.00	0.00	0.00	0.00	18.00
.......................................................TTTAGAATTTCTACGCTTTACC........................................................................................	22	1	17.00	0.00	0.00	0.00	0.00	17.00
................................................................................................CAAAGCGTTTGGATTCTGAAACC..............................................	23	1	16.00	0.00	0.00	0.00	2.00	14.00
................................................................................................CAAAGCGTTTGGATTCTGG..................................................	19	1	16.00	0.00	0.00	0.00	0.00	16.00
................................................................................................CAAAGCGTTTGGATTCTGAAAAA..............................................	23	1	15.00	0.00	0.00	0.00	1.00	14.00
........................................................TTAGAATTCCTACGCTTTACCG.......................................................................................	22	1	15.00	0.00	0.00	0.00	1.00	14.00
..................................................................................................AAGCGTTTGGATTCTGAAAC...............................................	20	1	14.00	0.00	0.00	0.00	1.00	13.00
................T---------------------TGTGGGCGCTGTAGAGT..............................................................................................................	18	1	14.00	0.00	1.00	0.00	2.00	11.00
.................................................................................................AAAGCGTTTGGATTCTGAAAC...............................................	21	1	13.00	3.00	0.00	1.00	0.00	9.00
.......................................................TTTAGAATTCCTACGCTTTA..........................................................................................	20	1	13.00	0.00	2.00	0.00	1.00	10.00
.......................................................TTTAGAATTCCTACGCTTTCCC........................................................................................	22	1	13.00	0.00	0.00	0.00	1.00	12.00
.......................................................TTTAGAATTCCTACCCTTTACC........................................................................................	22	1	12.00	0.00	1.00	0.00	3.00	8.00
................................................................................................CAAAGCGTTTGGATTCTTAAAC...............................................	22	1	12.00	0.00	1.00	0.00	0.00	11.00
................................................................................................CAAAGCGTTTGGATTCTG...................................................	18	1	12.00	0.00	3.00	0.00	5.00	4.00
.......................................................TTTAGAATTACTACGCTTTACC........................................................................................	22	1	12.00	0.00	0.00	0.00	0.00	12.00
.......................................................TTTAGAATTCCCACGCTTTACC........................................................................................	22	1	11.00	0.00	0.00	0.00	0.00	11.00
.......................................................TTTAGAATTCCTACTCTTTACC........................................................................................	22	1	10.00	0.00	0.00	0.00	0.00	10.00
........................................................TTAGAATTCCTACGCTTTACC........................................................................................	21	1	10.00	2.00	0.00	0.00	1.00	7.00
.......................................................TTTAGAATTCCTACGCCTTACC........................................................................................	22	1	10.00	0.00	0.00	0.00	2.00	8.00
.......................................................CTTAGAATTCCTACGCTTTACC........................................................................................	22	1	9.00	1.00	0.00	0.00	2.00	6.00
................................................................................................CAAAGCGTTTGGATTCTGAAACAA.............................................	24	1	9.00	0.00	0.00	0.00	1.00	8.00
................................................................................................CAAAGCGTTTGGATTCTGAAACG..............................................	23	1	8.00	0.00	0.00	0.00	0.00	8.00
.......................................................TTTAGAATTCCTACGCTTACC.........................................................................................	21	1	7.00	0.00	0.00	0.00	0.00	7.00
................................................................................................CAAAGCGTTTGGATTCTGCAA................................................	21	1	7.00	0.00	0.00	0.00	0.00	7.00
................................................................................................CAAAGCGTTTGGATTCTCAAAC...............................................	22	1	7.00	0.00	0.00	0.00	0.00	7.00
................................................................................................CAAAGCTTTTGGATTCTGAAA................................................	21	1	7.00	0.00	0.00	0.00	0.00	7.00
.......................................................TTTAGAATTCCTACGCTTTACCC.......................................................................................	23	1	7.00	0.00	0.00	0.00	0.00	7.00
................................................................................................CAAAGCGTTTGGATTCTT...................................................	18	1	7.00	0.00	0.00	0.00	1.00	6.00
.......................................................TTTAGACTTCCTACGCTTTACC........................................................................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
.......................................................TTTAGAATTCCTGCGCTTTACC........................................................................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
................................................................................................CAAAGCGTTTGGATTCTGAAAT...............................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
................................................................................................CAAAGCGTTTGGATTCTGAAT................................................	21	1	6.00	0.00	0.00	0.00	1.00	5.00
.......................................................TTTAGAATCCCTACGCTTTACC........................................................................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
................................................................................................CAAAGCGTTTGGATTCTAAAAC...............................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
................................................................................................CAAAGCGTTTGGATTCTGACA................................................	21	1	6.00	0.00	0.00	0.00	4.00	2.00
.......................................................TTTAGAATTCCTACGCTTTACCGT......................................................................................	24	1	6.00	0.00	2.00	0.00	3.00	1.00
.......................................................TTTAGAACTCCTACGCTTTACC........................................................................................	22	1	6.00	0.00	0.00	0.00	1.00	5.00
.......................................................TTTAGAATTxCTACGCTTTACC........................................................................................	21	1	6.00	0.00	0.00	0.00	0.00	6.00
................................................................................................CAAAGCGTTTGGATTCTGAAAG...............................................	22	1	5.00	0.00	1.00	0.00	0.00	4.00
...............................................................................................GCAAAGCGTTTGGATTCTGG..................................................	20	1	5.00	0.00	0.00	0.00	0.00	5.00
................................................................................................CAAAGCGTTTGGATTCTGACAC...............................................	22	1	5.00	0.00	1.00	0.00	2.00	2.00
...............AT---------------------TGTGGGCGCTGTAGAGT..............................................................................................................	19	1	5.00	0.00	1.00	0.00	1.00	3.00
................................................................................................CAAGGCGTTTGGATTCTGAAA................................................	21	1	5.00	0.00	0.00	0.00	0.00	5.00
................................................................................................CAAAGCGTTTGGATTCTGAAG................................................	21	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................TTTAGAATTCCTACGCTT............................................................................................	18	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................TTTAGAGTTCCTACGCTTTACC........................................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................TTGAGAATTCCTACGCTTTACC........................................................................................	22	1	5.00	0.00	0.00	0.00	4.00	1.00
................................................................................................CAAAGCGTTTGGTTTCTGAAAC...............................................	22	1	5.00	0.00	0.00	0.00	5.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACT........................................................................................	22	1	5.00	0.00	0.00	0.00	1.00	4.00
.......................................................TTTAGAATTCCTACACTTTACC........................................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
.....................................................GTTTTAGAATTCCTACGCTTT...........................................................................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................TTTAGAATTCCTACGCTTTCC.........................................................................................	21	1	4.00	0.00	0.00	0.00	1.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGAC.................................................	20	1	4.00	0.00	0.00	0.00	0.00	4.00
................................................................................................CAAAGCGTTTGTATTCTGAAAC...............................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................TTTAGAATTCATACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	0.00	1.00	3.00
................................................................................................CAAAGCTTTTGGATTCTGAAAC...............................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................TTTAGGATTCCTACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................TTTAGAATTGCTACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................TTTAGAATTCCTACGCTCTACC........................................................................................	22	1	4.00	0.00	0.00	0.00	1.00	3.00
................................................................................................CAAAGCGTTTGCATTCTGAAAC...............................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................TCTAGAATTCCTACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
................................................................................................CAAAGCGTTTGGATTCTGAT.................................................	20	1	4.00	0.00	0.00	0.00	1.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGAAC................................................	21	1	4.00	0.00	0.00	0.00	2.00	2.00
................................................................................................CAAAGCGTTTGGATTCTGGAAC...............................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................TTTAGAATTCCTACGCTTTG..........................................................................................	20	1	3.00	0.00	0.00	0.00	1.00	2.00
................................................................................................CAAAGCGTTTAGATTCTGAAAC...............................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................TTTAGAATTCCTACGCTTTACA........................................................................................	22	1	3.00	0.00	1.00	0.00	0.00	2.00
................................................................................................CAAAGCGGTTGGATTCTGAAAC...............................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
.....................................................GTTTTAGAATTCCTACGCTTTA..........................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGTAA................................................	21	1	3.00	0.00	0.00	0.00	1.00	2.00
...............................................................................................TCAAAGCGTTTGGATTCTGAAA................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
...................................................................................................AGCGTTTGGATTCTGAAACCC.............................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................TTTAGAATTCCTACGTTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................CAGAGCGTTTGGATTCTGAAA................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGAAACTT.............................................	24	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGCAAC...............................................	22	1	3.00	0.00	1.00	0.00	0.00	2.00
.......................................................TTTAAAATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................TTTAGCATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................TTTAGAATTCCTACGCTTTACCA.......................................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
...............................................................................................GCAAAGCGTTTGGATTCTAAAA................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................TAAAGCGTTTGGATTCTGAAAC...............................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
...............................................................................................GCAAAGCGTTTGGATTCTG...................................................	19	1	3.00	0.00	0.00	0.00	2.00	1.00

droEre2

GGCA----ATAATAAAT---------------------TGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCAT--------ATTATTA-------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	1	3234.00	98.00	167.00	0.00	2969.00
................................................................................................CAAAGCGTTTGGATTCTGAAACA..............................................	23	1	726.00	11.00	16.00	0.00	699.00
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	1	690.00	31.00	80.00	0.00	579.00
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	1	479.00	7.00	35.00	0.00	437.00
.............................................................................GTGGCA-TACGAAATTCGG.....................................................................	18	1	231.00	10.00	6.00	0.00	215.00
.......................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................	23	1	203.00	11.00	2.00	0.00	190.00
................................................................................................CAAAGCGTTTGGATTCTGAAA................................................	21	1	152.00	4.00	7.00	0.00	141.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAA................................................	22	1	81.00	4.00	3.00	0.00	74.00
................................................................................................CAAAGCGTTTGGATTCTGAA.................................................	20	1	75.00	0.00	1.00	0.00	74.00
................................................................................................CAAAGCGTTTGGATTCTGAAACT..............................................	23	1	69.00	0.00	0.00	0.00	69.00
................................................................................................CAAAGCGTTTGGATTCTG...................................................	18	1	55.00	0.00	1.00	0.00	54.00
................................................................................................CAAAGCGTTTGGATTCTGAAAA...............................................	22	1	52.00	0.00	5.00	0.00	47.00
................................................................................................CAAAGCGTTTGGATTCTGA..................................................	19	1	41.00	0.00	2.00	0.00	39.00
.......................................................TTTAGAATTCCTACGCTTTA..........................................................................................	20	1	36.00	0.00	2.00	0.00	34.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAAC...............................................	23	1	32.00	4.00	7.00	0.00	21.00
.......................................................TTTAGAATTCCTACTCTTTACC........................................................................................	22	1	28.00	4.00	1.00	0.00	23.00
.......................................................TTTAGAATTCCTACGCTTTACA........................................................................................	22	1	24.00	1.00	0.00	0.00	23.00
.......................................................TTTAGAATTCCTACGATTTACC........................................................................................	22	1	22.00	0.00	0.00	0.00	22.00
.......................................................TTTATAATTCCTACGCTTTACC........................................................................................	22	1	17.00	0.00	0.00	0.00	17.00
................................................................................................CAAAGCGTTTGGATTCTGAAACG..............................................	23	1	17.00	0.00	0.00	0.00	17.00
.......................................................TTTAGAATTCATACGCTTTACC........................................................................................	22	1	16.00	0.00	0.00	0.00	16.00
.......................................................TTTAGAATTACTACGCTTTACC........................................................................................	22	1	15.00	0.00	0.00	0.00	15.00
................................................................................................CAAAGCGTTTGGATTCTGT..................................................	19	1	14.00	0.00	1.00	0.00	13.00
................................................................................................CAAAGCGTTTGGATTCTGAAAAA..............................................	23	1	13.00	0.00	0.00	0.00	13.00
.......................................................TTTGGAATTCCTACGCTTTACC........................................................................................	22	1	13.00	0.00	1.00	0.00	12.00
................................................................................................CAAAGCGTTTGGATTCTGAAACAA.............................................	24	1	12.00	0.00	1.00	0.00	11.00
.............................................................................GTGGCA-TACGAAATTCGGT....................................................................	19	1	11.00	2.00	0.00	0.00	9.00
................................................................................................CAAAGCGTTTGGATTCTGAAACC..............................................	23	1	11.00	0.00	1.00	0.00	10.00
................................................................................................AAAAGCGTTTGGATTCTGAAACA..............................................	23	1	11.00	0.00	0.00	0.00	11.00
.................................................................................................AAAGCGTTTGGATTCTGAAAC...............................................	21	1	10.00	0.00	1.00	0.00	9.00
.......................................................TTTAGAATTCCTAAGCTTTACC........................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
.......................................................TTTAGAATTCCTACGCTTTAAC........................................................................................	22	1	9.00	0.00	0.00	0.00	9.00
................................................................................................CAAAGCGTTTTGATTCTGAAAC...............................................	22	1	9.00	0.00	0.00	0.00	9.00
.......................................................TTTATAATTCCTACGCTTTAC.........................................................................................	21	1	9.00	0.00	0.00	0.00	9.00
.......................................................TTTAGAATTCCTACGCTTT...........................................................................................	19	1	8.00	0.00	0.00	0.00	8.00
...............................................................................................GCAAAGCGTTTGGATTCTGAA.................................................	21	1	8.00	0.00	0.00	0.00	8.00
................................................................................................CAAAGCGTTTGTATTCTGAAACA..............................................	23	1	8.00	0.00	1.00	0.00	7.00
......................................................CTTTAGAATTCCTACGCTTTACC........................................................................................	23	1	8.00	0.00	0.00	0.00	8.00
................................................................................................CAAAGCGTTTGGATTCTTAAAC...............................................	22	1	7.00	2.00	0.00	0.00	5.00
...............................................................................................GCAAAGCGTTTGGATTCTGA..................................................	20	1	7.00	0.00	0.00	0.00	7.00
................................................................................................CAAAGCGTTTGGATTCTTAAACA..............................................	23	1	7.00	0.00	0.00	0.00	7.00
................................................................................................AAAAGCGTTTGGATTCTGAAAC...............................................	22	1	7.00	0.00	0.00	0.00	7.00
................................................................................................CAAATCGTTTGGATTCTGAAAC...............................................	22	1	6.00	0.00	0.00	0.00	6.00
.......................................................TTTAGAATTCCTACGCTTTCCC........................................................................................	22	1	6.00	0.00	2.00	0.00	4.00
.................................................................................................AAAGCGTTTGGATTCTGAAACA..............................................	22	1	6.00	0.00	0.00	0.00	6.00
.......................................................TTTAGAATTTCTACGCTTTACC........................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
................................................................................................CAAAGCGTTTTGATTCTGAAACA..............................................	23	1	6.00	0.00	0.00	0.00	6.00
.......................................................TTTAGAATTCCTACGCCTTACC........................................................................................	22	1	6.00	1.00	1.00	0.00	4.00
.......................................................TTTAGAATTCCTATGCTTTACC........................................................................................	22	1	5.00	0.00	2.00	0.00	3.00
.............................................................................GTGGCA-TACTAAATTCGG.....................................................................	18	1	5.00	0.00	0.00	0.00	5.00
.......................................................TTAAGAATTCCTACGCTTTACC........................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.......................................................TTCAGAATTCCTACGCTTTACC........................................................................................	22	1	5.00	1.00	0.00	0.00	4.00
.......................................................TTTAGAATTCTTACGCTTTACC........................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.......................................................TTTAGAATTCCTCCGCTTTACC........................................................................................	22	1	4.00	1.00	0.00	0.00	3.00
.......................................................TTTAGAATTCCTACGCTTACC.........................................................................................	21	1	4.00	0.00	1.00	0.00	3.00
................................................................................................CAAAGAGTTTGGATTCTGAAACA..............................................	23	1	4.00	0.00	0.00	0.00	4.00
................................................................................................CAAAGCGTTTGGATTCTGAAAT...............................................	22	1	4.00	0.00	0.00	0.00	4.00
................................................................................................AAAAGCGTTTGGATTCTG...................................................	18	1	4.00	0.00	0.00	0.00	4.00
................................................................................................CAAAGCTTTTGGATTCTGAAAC...............................................	22	1	4.00	0.00	0.00	0.00	4.00
.......................................................CTTAGAATTCCTACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.......................................................TTTAGAATTCCTACTCTTTAC.........................................................................................	21	1	4.00	0.00	0.00	0.00	4.00
................................................................................................CAAAGCGTTTGGATTATGAAAC...............................................	22	1	4.00	0.00	0.00	0.00	4.00
.......................................................TTTAGAATTCCTACGCTTTACCGT......................................................................................	24	1	4.00	0.00	0.00	0.00	4.00
................................................................................................CAAAGCGTTTGGATTATGAAACA..............................................	23	1	4.00	0.00	0.00	0.00	4.00
.......................................................TTTAGAATTCCTACGATTTAC.........................................................................................	21	1	4.00	0.00	1.00	0.00	3.00
......................................................CTTTAGAATTCCTACGCTTTAC.........................................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..................................................................................................AAGCGTTTGGATTCTGAAAC...............................................	20	1	3.00	1.00	0.00	0.00	2.00
.............................................................................GTGTCA-TACGAAATTCGG.....................................................................	18	1	3.00	0.00	0.00	0.00	3.00
................................................................................................CGAAGCGTTTGGATTCTGAAAC...............................................	22	1	3.00	0.00	1.00	0.00	2.00
................................................................................................CAAAGAGTTTGGATTCTGAAA................................................	21	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTAGAATTCCxACGCTTTACC........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTAGAATTCCTGCGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTAGAATTCCCACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
................................................................................................CAAAGCGTTTGGATTCTCAAAC...............................................	22	1	3.00	0.00	1.00	0.00	2.00
................................................................................................CAAAGCGTTTGTATTCTGAAAC...............................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTAGAATTCCTACGCTTTACCA.......................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTAGAATTCCTACGCTT............................................................................................	18	1	3.00	0.00	0.00	0.00	3.00
................................................................................................CAAAGAGTTTGGATTCTGAAAC...............................................	22	1	3.00	0.00	0.00	0.00	3.00
................................................................................................TAAAGCGTTTGGATTCTGAAAC...............................................	22	1	3.00	1.00	0.00	0.00	2.00
.......................................................TTTAGAGTTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTGAGAATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTACAATTCCTACGCTTTACC........................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.......................................................TTCAGAATTCCTACGCTTTAC.........................................................................................	21	1	3.00	0.00	1.00	0.00	2.00
.......................................................TTTAGAATCCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTAGGATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTAGAATTCCTACGCTTTAA.........................................................................................	21	1	3.00	1.00	0.00	0.00	2.00
.........................................................TAGAATTCCTACGCTTTACC........................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGGAACA..............................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................TCTAGAATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTAGAATTCCTACGCTTTGCC........................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
................................................................................................CAAAGAGTTTGGATTCTGAAAA...............................................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................TTAGAATTCCTACGCTTTACC........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
................................................................................................CAAAGCTTTTGGATTCTGAAACA..............................................	23	1	3.00	0.00	0.00	0.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGGAAC...............................................	22	1	3.00	0.00	0.00	0.00	3.00
................................................................................................CAAAGCGTTTGGATCCTGAAACA..............................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTAGAATTxCTACGCTTTACC........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.......................................................TTTAGAATTCCTACGCTTCACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00

droEug1

AGAACTATATATTAAATTGTTATAAATG-------CAGC-TGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAAGTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCGTTATCTT--------TTTATTA------AC----A

Size

Hit Count

Total Norm

droBia1

CGAT----ATGTTAAATTGTTAAAAACA-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCCC--------TTGATTA------AC----A

Size

Hit Count

Total Norm

droTak1

GTGG----GTATCAAATTGTTATAAATG-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCTT--------TTAATTA------AC----A

Size

Hit Count

Total Norm

droEle1

GCTT----G--------------------------CACCTTGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAGTCCATTATCTT--------TTTATTC-----AAA----A

Size

Hit Count

Total Norm

droRho1

TACA----A----------------ATGCGGCTTGCACCTTGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAATCCATTATCTT--------TTTATTAACAA-TAA----A

Size

Hit Count

Total Norm

droFic1

C-------------------------------------TTTGGGTATTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCTT--------TTT-----------------

Size

Hit Count

Total Norm

droKik1

CTAT----ATATT-----CTCATGAATTGGGCA--AGTCTGGGGCGTTGTAGGGCTTTAGAATTCCTACGCTTTACCGTGGCA-TTCGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGCGTCCGTGAGTAAAGAAAA--TT---T------GAA----A

Size

Hit Count

Total Norm

droAna3

TAAA----A-----------------------------AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAATGTGTTTTCA------T-AAA----T	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	1	2305.00	36.00	2091.00	140.00	38.00
................................................................................................CAAAGCGTTTGGATTCTGGAAC...............................................	22	1	2077.00	260.00	1321.00	484.00	12.00
................................................................................................CAAAGCGTTTGGATTCTGGAACA..............................................	23	1	383.00	32.00	328.00	23.00	0.00
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	1	326.00	2.00	294.00	23.00	7.00
................................................................................................CAAAGCGTTTGGATTCTGGAA................................................	21	1	181.00	26.00	103.00	50.00	2.00
................................................................................................CAAAGCGTTTGGATTCTGGA.................................................	20	1	82.00	9.00	52.00	21.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................	23	1	65.00	0.00	64.00	0.00	1.00
................................................................................................CAAAGCGTTTGGATTCTGG..................................................	19	1	47.00	3.00	37.00	7.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGAACT..............................................	23	1	44.00	3.00	37.00	4.00	0.00
.......................................................TTTAGAATTCCTACGCTTTA..........................................................................................	20	1	36.00	1.00	32.00	3.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGAAA...............................................	22	1	30.00	3.00	27.00	0.00	0.00
.............................................................................GTTGCA-TATGAAATTAGG.....................................................................	18	1	25.00	0.00	24.00	0.00	1.00
...............................................................................................GCAAAGCGTTTGGATTCTGGAA................................................	22	1	24.00	0.00	23.00	1.00	0.00
.......................................................TTTAGAATTCCTACGCTTTGCC........................................................................................	22	1	24.00	0.00	21.00	3.00	0.00
.......................................................TTTGGAATTCCTACGCTTTACC........................................................................................	22	1	21.00	0.00	19.00	2.00	0.00
................................................................................................CAAATCGTTTGGATTCTGGAAC...............................................	22	1	21.00	4.00	17.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGAGC...............................................	22	1	20.00	5.00	12.00	3.00	0.00
.......................................................TTTAGAATTCCTACGATTTACC........................................................................................	22	1	18.00	0.00	18.00	0.00	0.00
.......................................................TTGAGAATTCCTACGCTTTACC........................................................................................	22	1	18.00	0.00	16.00	2.00	0.00
.................................................................................................AAAGCGTTTGGATTCTGGAAC...............................................	21	1	17.00	2.00	14.00	1.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGTAAC...............................................	22	1	14.00	2.00	10.00	2.00	0.00
.......................................................TTTAGAATTCCTACTCTTTACC........................................................................................	22	1	13.00	0.00	12.00	1.00	0.00
.......................................................TTTAGAATTCCTACGCTTT...........................................................................................	19	1	13.00	0.00	12.00	1.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACCGT......................................................................................	24	1	13.00	0.00	12.00	1.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACA........................................................................................	22	1	13.00	0.00	10.00	0.00	3.00
................................................................................................AAAAGCGTTTGGATTCTGGAAC...............................................	22	1	12.00	0.00	7.00	5.00	0.00
.......................................................TTTAGAATTCCTACGCTTTATC........................................................................................	22	1	12.00	0.00	11.00	1.00	0.00
.......................................................TTTATAATTCCTACGCTTTACC........................................................................................	22	1	11.00	0.00	8.00	2.00	1.00
................................................................................................CAAAGCGTTTGGATTCTGGAAT...............................................	22	1	11.00	1.00	7.00	3.00	0.00
...............................................................................................GCAAAGCGTTTGGATTCTGGA.................................................	21	1	11.00	0.00	7.00	4.00	0.00
................................................................................................CAAAGCGTTTGGATTATGGAAC...............................................	22	1	10.00	0.00	5.00	5.00	0.00
................................................................................................CAAAGCGTTTGTATTCTGGAAC...............................................	22	1	10.00	1.00	7.00	2.00	0.00
...............................................................................................GCAAAGCGTTTGGATTCTGG..................................................	20	1	10.00	1.00	9.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGATC...............................................	22	1	9.00	3.00	2.00	4.00	0.00
................................................................................................CAAAGAGTTTGGATTCTGGAAC...............................................	22	1	9.00	3.00	4.00	2.00	0.00
.......................................................TTTAGAATTCCTACGCTTTAGC........................................................................................	22	1	9.00	2.00	6.00	0.00	1.00
................................................................................................CAAAGCGTTTTGATTCTGGAAC...............................................	22	1	9.00	3.00	6.00	0.00	0.00
................................................................................................CAAAGCGTTTGGCTTCTGGAAC...............................................	22	1	9.00	1.00	0.00	8.00	0.00
........................................................TTAGAATTCCTACGCTTTACC........................................................................................	21	1	9.00	0.00	9.00	0.00	0.00
.......................................................TTTAGAATTCCTACGCTTTAAC........................................................................................	22	1	9.00	0.00	9.00	0.00	0.00
................................................................................................CAAGGCGTTTGGATTCTGGAAC...............................................	22	1	8.00	1.00	5.00	2.00	0.00
................................................................................................CAAAGCGTTTGGATTCTTGAAC...............................................	22	1	8.00	0.00	5.00	2.00	1.00
.......................................................TTTAGAATTCCTGCGCTTTACC........................................................................................	22	1	8.00	2.00	5.00	1.00	0.00
................................................................................................CAAAGCGTTTGGATTCTAGAAC...............................................	22	1	7.00	0.00	4.00	3.00	0.00
.......................................................TTTAGAATTCATACGCTTTACC........................................................................................	22	1	7.00	0.00	6.00	1.00	0.00
.......................................................TTTGGAATTCCTACGCTTTAC.........................................................................................	21	1	6.00	0.00	6.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGAACG..............................................	23	1	6.00	0.00	4.00	1.00	1.00
................................................................................................CAAAGCGTTTGGATTCTGGGAC...............................................	22	1	6.00	0.00	3.00	3.00	0.00
.......................................................TTGAGAATTCCTACGCTTTAC.........................................................................................	21	1	6.00	0.00	6.00	0.00	0.00
.......................................................CTTAGAATTCCTACGCTTTACC........................................................................................	22	1	6.00	0.00	5.00	1.00	0.00
................................................................................................CAGAGCGTTTGGATTCTGGAAC...............................................	22	1	5.00	0.00	4.00	1.00	0.00
................................................................................................CAAAGCGTTTGGTTTCTGGAAC...............................................	22	1	5.00	1.00	0.00	4.00	0.00
................................................................................................CAAAGCGTTTCGATTCTGGAAC...............................................	22	1	5.00	0.00	2.00	3.00	0.00
.................................................................................................AAAGCGTTTGGATTCTGGAACA..............................................	22	1	5.00	0.00	5.00	0.00	0.00
................................................................................................GAAAGCGTTTGGATTCTGGAAC...............................................	22	1	5.00	0.00	3.00	2.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGACC...............................................	22	1	5.00	2.00	3.00	0.00	0.00
.......................................................TTTAGAATTCCTACGCTTACC.........................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
.......................................................TTTAGAATTACTACGCTTTACC........................................................................................	22	1	5.00	0.00	4.00	1.00	0.00
................................................................................................CAAAGCGxTTGGATTCTGGAAC...............................................	21	1	5.00	2.00	3.00	0.00	0.00
.......................................................TTTAGAGTTCCTACGCTTTACC........................................................................................	22	1	4.00	0.00	3.00	1.00	0.00
................................................................................................CAAAGCGCTTGGATTCTGGAAC...............................................	22	1	4.00	0.00	1.00	3.00	0.00
................................................................................................CAAAGCGTTCGGATTCTGGAAC...............................................	22	1	4.00	1.00	2.00	1.00	0.00
.......................................................TTTAGAATTCCTACGATTTAC.........................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACCGTT.....................................................................................	25	1	4.00	0.00	4.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGAAAA..............................................	23	1	4.00	1.00	2.00	1.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	1	4.00	0.00	2.00	1.00	1.00
.......................................................TTTAGAATTCCTAAGCTTTACC........................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.......................................................TTTAGAATTCCTACGCTTCACC........................................................................................	22	1	4.00	0.00	1.00	3.00	0.00
................................................................................................TAAAGCGTTTGGATTCTGGAAC...............................................	22	1	4.00	0.00	2.00	2.00	0.00
................................................................................................CAAAGCTTTTGGATTCTGGAAC...............................................	22	1	4.00	0.00	4.00	0.00	0.00
...............................................................................................GCAAAGCGTTTGGATTCTGGAAA...............................................	23	1	4.00	0.00	4.00	0.00	0.00
.......................................................TTTAGAATTCCTACGCTTTGC.........................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACT........................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGCAAC...............................................	22	1	4.00	0.00	1.00	3.00	0.00
................................................................................................CAAAGCGTTAGGATTCTGGAAC...............................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................TTTAGGATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
................................................................................................CGAAGCGTTTGGATTCTGGAAC...............................................	22	1	3.00	0.00	3.00	0.00	0.00
................................................................................................CAAAGCGTTTGCATTCTGGAAC...............................................	22	1	3.00	2.00	1.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAC................................................	21	1	3.00	0.00	3.00	0.00	0.00
................................................................................................CAAAGCGTTTGGGTTCTGGAAC...............................................	22	1	3.00	2.00	0.00	1.00	0.00
................................................................................................CAAAGCGTTTGGATTCTCGAAC...............................................	22	1	3.00	0.00	1.00	1.00	1.00
................................................................................................CAAAGCGTTTGGATTTTGGAAC...............................................	22	1	3.00	0.00	3.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGAG................................................	21	1	3.00	0.00	1.00	2.00	0.00
................................................................................................CAAAGCGTGTGGATTCTGGAAC...............................................	22	1	3.00	0.00	0.00	3.00	0.00
................................................................................................CAAAGCGTTTAGATTCTGGAAC...............................................	22	1	3.00	0.00	3.00	0.00	0.00
................................................................................................CAAAGCGTTTGTATTCTGGAACA..............................................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................TTTAGAATCCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.......................................................TTTAGAATTCTTACGCTTTACC........................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATCCTGGAAC...............................................	22	1	3.00	0.00	1.00	2.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGT.................................................	20	1	3.00	0.00	2.00	1.00	0.00
.......................................................TTTAGAATTCCTACGCCTTACC........................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.......................................................TTTAGAATTCCTATGCTTTACC........................................................................................	22	1	3.00	1.00	2.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTG...................................................	18	1	3.00	0.00	2.00	0.00	1.00
................................................................................................CAAAGCGGTTGGATTCTGGAAC...............................................	22	1	3.00	0.00	0.00	3.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAACA..............................................	23	1	3.00	0.00	3.00	0.00	0.00
................................................................................................CAAAGCGTTTGGATTCTTGAACA..............................................	23	1	3.00	0.00	3.00	0.00	0.00
................................................................................................CAAAGCGTTGGGATTCTGGAAC...............................................	22	1	3.00	0.00	1.00	2.00	0.00
................................................................................................CAAAGCGGTGGGATTCTGGAAC...............................................	22	1	3.00	0.00	0.00	2.00	1.00
.......................................................TTTAGAATCCCTACGCTTTAC.........................................................................................	21	1	3.00	0.00	3.00	0.00	0.00

droBip1

AAAA----GTAACCAGA---------------------AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGC--TATGATATTTGGCAAAGCGTTTGGATTCTGGAACCCTACGTATTCATTTTTTT--------GTAAAAA-----GGG----A

Size

Hit Count

Total Norm

dp4

ATAG----ATAGA----------------------TAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTCA-------------------ACAAA----A	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	1	575.00	21.00	228.00	299.00	27.00
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	1	501.00	48.00	112.00	323.00	18.00
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	1	204.00	3.00	36.00	161.00	4.00
................................................................................................CAAAGCGTTTGGATTCTGAAACA..............................................	23	1	43.00	13.00	15.00	15.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................	23	1	28.00	0.00	21.00	5.00	2.00
................................................................................................CAAAGCGTTTGGATTCTGAAA................................................	21	1	24.00	3.00	11.00	8.00	2.00
.......................................................TTTAGAATTCCTACGCTTTA..........................................................................................	20	1	12.00	0.00	2.00	10.00	0.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAAC...............................................	23	1	12.00	0.00	3.00	9.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAACC..............................................	23	1	10.00	0.00	4.00	6.00	0.00
.......................................................TTTAGAATTCCTACGCTTTGCC........................................................................................	22	1	8.00	0.00	0.00	7.00	1.00
.......................................................TTTAGAATTCCTACGCTTT...........................................................................................	19	1	8.00	0.00	2.00	6.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAA.................................................	20	1	8.00	0.00	2.00	6.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACCGT......................................................................................	24	1	7.00	0.00	1.00	6.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAACT..............................................	23	1	7.00	2.00	2.00	3.00	0.00
.......................................................TTTAGAATTCCTACGCTTTATC........................................................................................	22	1	5.00	0.00	4.00	1.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACA........................................................................................	22	1	4.00	0.00	3.00	1.00	0.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAA................................................	22	1	4.00	1.00	0.00	0.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGA..................................................	19	1	4.00	0.00	2.00	2.00	0.00
.......................................................TTTAGAATTCCTACCCTTTACC........................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
................................................................................................CAAAGCGTTTGGTTTCTGAAAC...............................................	22	1	3.00	0.00	1.00	2.00	0.00
.................................................................................................AAAGCGTTTGGATTCTGAAAC...............................................	21	1	3.00	1.00	1.00	1.00	0.00
................................................................................................CAAGGCGTTTGGATTCTGAAAC...............................................	22	1	3.00	0.00	2.00	0.00	1.00
................................................................................................CAAAGCGTTTGGCTTCTGAAAC...............................................	22	1	3.00	0.00	2.00	1.00	0.00
.......................................................CTTAGAATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	1.00	1.00	1.00
................................................................................................CAAAGCGTTTGGATTCTGAACC...............................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................TTTAGAATTCCTACGATTTACC........................................................................................	22	1	3.00	0.00	2.00	0.00	1.00
.......................................................TTTAGAATTCCTATGCTTTACC........................................................................................	22	1	3.00	0.00	2.00	1.00	0.00

droPer1

ATAG----ATAGA----------------------TAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTCA-------------------ACAAA----A	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	1	1826.00	78.00	25.00	426.00	629.00	668.00
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	1	1676.00	10.00	52.00	373.00	523.00	718.00
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	1	407.00	4.00	43.00	110.00	129.00	121.00
................................................................................................CAAAGCGTTTGGATTCTGAAA................................................	21	1	405.00	29.00	6.00	37.00	136.00	197.00
................................................................................................CAAAGCGTTTGGATTCTGAAACA..............................................	23	1	121.00	11.00	1.00	17.00	67.00	25.00
................................................................................................CAAAGCGTTTGGATTCTGAAACC..............................................	23	1	68.00	3.00	1.00	7.00	19.00	38.00
.......................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................	23	1	59.00	1.00	3.00	8.00	16.00	31.00
................................................................................................CAAAGCGTTTGGATTCTGAA.................................................	20	1	56.00	1.00	0.00	13.00	33.00	9.00
................................................................................................CAAAGCGTTTGGATTCTGA..................................................	19	1	51.00	1.00	0.00	11.00	30.00	9.00
................................................................................................CAAAGCGTTTGGATTCTGAAACT..............................................	23	1	49.00	2.00	0.00	6.00	18.00	23.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAAC...............................................	23	1	40.00	3.00	1.00	13.00	8.00	15.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAA................................................	22	1	36.00	0.00	0.00	6.00	5.00	25.00
.......................................................TTTAGAATTCCTACGCTTTACCGT......................................................................................	24	1	21.00	1.00	0.00	2.00	18.00	0.00
................................................................................................CAAAGCGTTTGGATTCTG...................................................	18	1	15.00	0.00	0.00	4.00	11.00	0.00
.......................................................TTTAGAATTCCTACGCTTTGCC........................................................................................	22	1	14.00	0.00	0.00	6.00	5.00	3.00
................................................................................................CAAAGCGTTTGGATTCTTAAAC...............................................	22	1	12.00	0.00	0.00	1.00	3.00	8.00
.......................................................TTTAGAATTCCTACGCTTTA..........................................................................................	20	1	12.00	0.00	1.00	3.00	8.00	0.00
................................................................................................CAAAGCGGTTGGATTCTGAAAC...............................................	22	1	10.00	0.00	0.00	1.00	9.00	0.00
.......................................................TTTAGAATTCCTACGCTTT...........................................................................................	19	1	10.00	0.00	0.00	5.00	4.00	1.00
................................................................................................CAAAGCGCTTGGATTCTGAAAC...............................................	22	1	9.00	0.00	0.00	3.00	6.00	0.00
.................................................................................................AAAGCGTTTGGATTCTGAAAC...............................................	21	1	9.00	0.00	0.00	4.00	5.00	0.00
................................................................................................CAAGGCGTTTGGATTCTGAAAC...............................................	22	1	8.00	0.00	0.00	1.00	4.00	3.00
................................................................................................AAAAGCGTTTGGATTCTGAAAC...............................................	22	1	8.00	0.00	0.00	1.00	7.00	0.00
...............................................................................................GCAAAGCGTTTGGATTCTGAA.................................................	21	1	7.00	1.00	0.00	1.00	1.00	4.00
................................................................................................CAAAGAGTTTGGATTCTGAAAC...............................................	22	1	7.00	0.00	1.00	6.00	0.00	0.00
................................................................................................CAAAGCGTTTGGGTTCTGAAAC...............................................	22	1	7.00	0.00	0.00	0.00	5.00	2.00
................................................................................................CAAAGCGTTTGGTTTCTGAAAC...............................................	22	1	7.00	0.00	0.00	0.00	6.00	1.00
................................................................................................CAAAGCGTTTGGCTTCTGAAAC...............................................	22	1	7.00	0.00	0.00	0.00	6.00	1.00
................................................................................................CAAAGCGTTTGGATTCTCAAAC...............................................	22	1	6.00	0.00	0.00	1.00	1.00	4.00
.......................................................TTTAGAATTCCTAAGCTTTACC........................................................................................	22	1	6.00	0.00	1.00	1.00	4.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAAA...............................................	22	1	6.00	0.00	0.00	1.00	1.00	4.00
.......................................................TTTAGAATTCCTGCGCTTTACC........................................................................................	22	1	5.00	0.00	0.00	1.00	1.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGACAC...............................................	22	1	5.00	0.00	0.00	2.00	3.00	0.00
................................................................................................CAAAGCGTTTGTATTCTGAAAC...............................................	22	1	5.00	0.00	0.00	1.00	4.00	0.00
................................................................................................TAAAGCGTTTGGATTCTGAAAC...............................................	22	1	5.00	0.00	0.00	1.00	4.00	0.00
................................................................................................CAAAGCGTTTGGATTCTAAAAC...............................................	22	1	5.00	0.00	0.00	1.00	1.00	3.00
.......................................................TTTAGAATTCGTACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	1.00	2.00	1.00
.......................................................TTTGGAATTCCTACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
.......................................................TTTAGAATTCCGACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
.................................................................................................AAAGCGTTTGGATTCTGAAA................................................	20	1	4.00	0.00	0.00	0.00	4.00	0.00
.......................................................TTTAGAATTCTTACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	2.00	2.00	0.00
.......................................................TTTAGAAGTCCTACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
................................................................................................CAAAGCGGTTGGATTCTGAAA................................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
.......................................................TTGAGAATTCCTACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
................................................................................................GAAAGCGTTTGGATTCTGAAAC...............................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACCA.......................................................................................	23	1	4.00	0.00	0.00	1.00	3.00	0.00
.......................................................ATTAGAATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................TGTAGAATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................TTTAGAATTCATACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
........................................................TTAGAATTCCTACGCTTTACC........................................................................................	21	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................TTTAGAATGCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
......................................................CTTTAGAATTCCTACGCTTTACC........................................................................................	23	1	3.00	0.00	1.00	0.00	2.00	0.00
.......................................................TTTAGAATTCCTACGCTT............................................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................CAAAGCGTTTGGATCCTGAAAC...............................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
.......................................................TTTAGAGTTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................TTTAGAATTCCTCCGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	2.00	1.00
.......................................................TTTAGAATTCCTACGCTTTACCT.......................................................................................	23	1	3.00	0.00	0.00	1.00	2.00	0.00
................................................................................................CAAAGCTTTTGGATTCTGAAAC...............................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................TTTAGAATTCCTACGCTTTACT........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
................................................................................................CAAAGCGGTTGGTTTCTGAAAC...............................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................TTTATAATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................TTTAGAATTCCTACGCTTTAA.........................................................................................	21	1	3.00	0.00	1.00	1.00	0.00	1.00
................................................................................................CAAAGCGTTGGGATTCTGAAAC...............................................	22	1	3.00	0.00	0.00	1.00	1.00	1.00
................................................................................................CAAAGCGTTTGGATTCTGAAACG..............................................	23	1	3.00	0.00	0.00	0.00	2.00	1.00
................................................................................................CAACGCGTTTGGATTCTGAAAC...............................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................TTTAGAATTCCTACGCCTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGAAC...............................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAACC...............................................	22	1	3.00	0.00	0.00	0.00	2.00	1.00
.......................................................TTTAGAATTTCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................TTTAGAATTCCTACCCTTTACC........................................................................................	22	1	3.00	0.00	0.00	1.00	1.00	1.00
................................................................................................CAAAACGTTTGGATTCTGAAAC...............................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
................................................................................................CAAAGCGTTTGGTTTCTGATAC...............................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00

droWil1

CACA----ATCTGACAT---------------------T--------GGTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCA-----------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	1	60690.00	21.00	739.00	7119.00	52811.00
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	1	7168.00	56.00	371.00	848.00	5893.00
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	1	6113.00	1.00	24.00	644.00	5444.00
................................................................................................CAAAGCGTTTGGATTCTGAAA................................................	21	1	3364.00	13.00	30.00	112.00	3209.00
.......................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................	23	1	3173.00	3.00	119.00	1032.00	2019.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAA................................................	22	1	698.00	0.00	3.00	20.00	675.00
................................................................................................CAAAGCGTTTGGATTCTGAAACT..............................................	23	1	570.00	2.00	5.00	45.00	518.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAAC...............................................	23	1	561.00	2.00	50.00	68.00	441.00
................................................................................................CAAAGCGTTTGGATTCTGAA.................................................	20	1	332.00	4.00	7.00	42.00	279.00
.......................................................TTTAGAATTCCTACGCTTTACCT.......................................................................................	23	1	311.00	0.00	1.00	6.00	304.00
.......................................................TTTAGAATTCCTACGCTTTGCC........................................................................................	22	1	299.00	0.00	0.00	39.00	260.00
................................................................................................CAAAGCGTTTGGATTCTGAAACC..............................................	23	1	224.00	0.00	4.00	29.00	191.00
.......................................................TTTAGAATTCCTGCGCTTTACC........................................................................................	22	1	192.00	0.00	1.00	7.00	184.00
................................................................................................CAAAGCGTTTGGATTCTGAAACA..............................................	23	1	171.00	6.00	20.00	69.00	76.00
......................................................TTTTAGAATTCCTACGCTTTACC........................................................................................	23	1	111.00	0.00	0.00	6.00	105.00
................................................................................................CAAAGCGTTTGGATTCTGA..................................................	19	1	91.00	2.00	3.00	18.00	68.00
.......................................................TTTAGAATTCCTACGCTTTA..........................................................................................	20	1	90.00	0.00	3.00	27.00	60.00
......................................................TTTTAGAATTCCTACGCTTTAC.........................................................................................	22	1	88.00	0.00	4.00	3.00	81.00
...............................................................................................GCAAAGCGTTTGGATTCTGAA.................................................	21	1	80.00	0.00	1.00	2.00	77.00
..................................................................................................AAGCGTTTGGATTCTGAAAC...............................................	20	1	79.00	2.00	0.00	2.00	75.00
.......................................................TTTAGAATTCCTACGCTTTACCGT......................................................................................	24	1	75.00	0.00	3.00	67.00	5.00
.......................................................CTTAGAATTCCTACGCTTTACC........................................................................................	22	1	74.00	0.00	2.00	43.00	29.00
.......................................................TTTAGAATTTCTACGCTTTACC........................................................................................	22	1	69.00	0.00	1.00	5.00	63.00
.......................................................TTTAGAATTCTTACGCTTTACC........................................................................................	22	1	61.00	0.00	3.00	5.00	53.00
.......................................................TTTAGAATTCCTACGCTTTAAC........................................................................................	22	1	61.00	0.00	0.00	29.00	32.00
.......................................................TTTAGAATTCCTACTCTTTACC........................................................................................	22	1	56.00	0.00	1.00	8.00	47.00
.......................................................TTTAGAATTCCCACGCTTTACC........................................................................................	22	1	55.00	0.00	0.00	14.00	41.00
.......................................................TTTAGAATTCCTACGCCTTACC........................................................................................	22	1	53.00	0.00	2.00	10.00	41.00
........................................................TTAGAATTCCTACGCTTTACC........................................................................................	21	1	52.00	0.00	2.00	15.00	35.00
.......................................................TTTAGAATTCCTACGCTTACC.........................................................................................	21	1	49.00	0.00	0.00	18.00	31.00
.......................................................TTTAGAATTCCTCCGCTTTACC........................................................................................	22	1	49.00	0.00	1.00	5.00	43.00
.......................................................TTTAGAATTCCTACGCTTT...........................................................................................	19	1	47.00	0.00	0.00	2.00	45.00
.................................................................................................AAAGCGTTTGGATTCTGAAAC...............................................	21	1	44.00	0.00	6.00	10.00	28.00
.......................................................TTTAGAATTCCTACGCTTTACA........................................................................................	22	1	40.00	0.00	0.00	24.00	16.00
.......................................................TTTAGAATTCCTACACTTTACC........................................................................................	22	1	38.00	0.00	2.00	11.00	25.00
.......................................................TTTAGAATTCATACGCTTTACC........................................................................................	22	1	37.00	0.00	4.00	24.00	9.00
.......................................................TTTAGAATTACTACGCTTTACC........................................................................................	22	1	37.00	0.00	1.00	22.00	14.00
................................................................................................CAAAGCGTTTGGATTCTGAAAA...............................................	22	1	36.00	0.00	1.00	7.00	28.00
.......................................................TTTAGAATTCCTACGCTTTACCA.......................................................................................	23	1	33.00	1.00	0.00	2.00	30.00
.......................................................TTTAGAGTTCCTACGCTTTACC........................................................................................	22	1	32.00	0.00	0.00	13.00	19.00
.......................................................TTTAGAATTCCTACGATTTACC........................................................................................	22	1	32.00	0.00	1.00	25.00	6.00
.......................................................TTTAGAATCCCTACGCTTTACC........................................................................................	22	1	30.00	0.00	0.00	9.00	21.00
.......................................................TTTAGAATTCCTACGCTT............................................................................................	18	1	29.00	0.00	1.00	0.00	28.00
.......................................................TTTAAAATTCCTACGCTTTACC........................................................................................	22	1	28.00	0.00	0.00	10.00	18.00
.......................................................TTTAGAATTCCTACGCTTTGC.........................................................................................	21	1	28.00	0.00	0.00	2.00	26.00
.......................................................TTTAGAATTCCTACGCTTTACT........................................................................................	22	1	27.00	0.00	0.00	11.00	16.00
.......................................................TTTAGAATTxCTACGCTTTACC........................................................................................	21	1	26.00	0.00	0.00	4.00	22.00
................................................................................................CAAAGCGTTTGGATTCTTAAAC...............................................	22	1	26.00	0.00	1.00	1.00	24.00
................................................................................................CAAAGCTTTTGGATTCTGAAAC...............................................	22	1	25.00	0.00	1.00	3.00	21.00
.............................................................................GTCGCC-TACGAAACTCGG.....................................................................	18	1	25.00	0.00	12.00	4.00	9.00
.......................................................TTTAGAATTCCTAAGCTTTACC........................................................................................	22	1	25.00	0.00	0.00	18.00	7.00
.......................................................TTTAGAATTCCTATGCTTTACC........................................................................................	22	1	24.00	0.00	1.00	11.00	12.00
.......................................................TTTGGAATTCCTACGCTTTACC........................................................................................	22	1	24.00	0.00	0.00	12.00	12.00
.......................................................TTTAGAATTCCTACCCTTTACC........................................................................................	22	1	24.00	0.00	0.00	12.00	12.00
.......................................................TTTAGAATTCCTACGCTTCACC........................................................................................	22	1	21.00	0.00	0.00	10.00	11.00
.......................................................TTTAGAATTCCTACGCTTTACCC.......................................................................................	23	1	21.00	0.00	0.00	1.00	20.00
.......................................................GTTAGAATTCCTACGCTTTACC........................................................................................	22	1	21.00	0.00	0.00	16.00	5.00
...............................................................................................GCAAAGCTTTTGGATTCTGAAAC...............................................	23	1	21.00	0.00	0.00	1.00	20.00
................................................................................................CAAAGCGTTTGGGTTCTGAAAC...............................................	22	1	20.00	0.00	1.00	0.00	19.00
.......................................................TTTAGAACTCCTACGCTTTACC........................................................................................	22	1	20.00	0.00	0.00	9.00	11.00
.......................................................TTTAGAATTCCTACGCTTTATC........................................................................................	22	1	20.00	0.00	0.00	6.00	14.00
................................................................................................CAAAGCTTTTGGATTCTGAAA................................................	21	1	20.00	0.00	0.00	2.00	18.00
.......................................................TTTAGAATTCCTTCGCTTTACC........................................................................................	22	1	20.00	0.00	1.00	5.00	14.00
................................................................................................CAAAGCGTTTGGATTCTAAAAC...............................................	22	1	19.00	0.00	2.00	1.00	16.00
.......................................................TTTAGAATTCCTGCGCTTTAC.........................................................................................	21	1	19.00	0.00	0.00	0.00	19.00
................................................................................................CAAGGCGTTTGGATTCTGAAAC...............................................	22	1	18.00	0.00	0.00	0.00	18.00
................................................................................................CAAAGCGTTTGGATTCTGAAACG..............................................	23	1	18.00	0.00	1.00	8.00	9.00
.......................................................ATTAGAATTCCTACGCTTTACC........................................................................................	22	1	17.00	0.00	0.00	15.00	2.00
.......................................................TTTAGAATTCCTACGTTTTACC........................................................................................	22	1	17.00	0.00	0.00	7.00	10.00
.......................................................TTCAGAATTCCTACGCTTTACC........................................................................................	22	1	16.00	0.00	0.00	6.00	10.00
.......................................................TTTAGAATTCCTACxCTTTACC........................................................................................	21	1	16.00	0.00	0.00	0.00	16.00
.......................................................TTTAGGATTCCTACGCTTTACC........................................................................................	22	1	15.00	0.00	2.00	7.00	6.00
......................................................CTTTAGAATTCCTACGCTTTACC........................................................................................	23	1	15.00	0.00	0.00	11.00	4.00
.......................................................TTTAGAATTCCTACTCTTTAC.........................................................................................	21	1	15.00	0.00	0.00	1.00	14.00
.......................................................TTTAGAATTCCTACGCTCTACC........................................................................................	22	1	13.00	0.00	0.00	7.00	6.00
................................................................................................CAAAGCGTTTGTATTCTGAAAC...............................................	22	1	13.00	1.00	2.00	1.00	9.00
...................................................................................................AGCGTTTGGATTCTGAAAC...............................................	19	1	13.00	0.00	0.00	3.00	10.00
.......................................................TTTAGAATTGCTACGCTTTACC........................................................................................	22	1	13.00	0.00	0.00	4.00	9.00
.......................................................TTTAGAATTCCTAxxCTTTACC........................................................................................	20	1	12.00	0.00	0.00	0.00	12.00
................................................................................................CAGAGCGTTTGGATTCTGAAAC...............................................	22	1	12.00	0.00	0.00	0.00	12.00
................................................................................................CAAAGCGTTTTGATTCTGAAAC...............................................	22	1	12.00	0.00	0.00	0.00	12.00
.......................................................TCTAGAATTCCTACGCTTTACC........................................................................................	22	1	12.00	0.00	0.00	6.00	6.00
................................................................................................CAAAGCGTTTGGATTCTGAT.................................................	20	1	12.00	0.00	0.00	0.00	12.00
.......................................................TTTAGAATTCCAACGCTTTACC........................................................................................	22	1	12.00	0.00	0.00	10.00	2.00
................................................................................................CAAAGCGTTTGGATTCTCAAAC...............................................	22	1	11.00	0.00	1.00	0.00	10.00
.......................................................TTTAGAATTCCTGCGCTTTACCG.......................................................................................	23	1	11.00	0.00	0.00	0.00	11.00
................................................................................................CAAAGCGTTTGGATTCTG...................................................	18	1	11.00	0.00	1.00	2.00	8.00
.......................................................TTTAGAATTCCTACGCTTTAA.........................................................................................	21	1	11.00	0.00	0.00	4.00	7.00
................................................................................................CAAAGCGTTTGGATTCTAAAC................................................	21	1	11.00	0.00	0.00	0.00	11.00
...............................................................................................TCAAAGCGTTTGGATTCTGAAAC...............................................	23	1	10.00	0.00	1.00	1.00	8.00
................................................................................................CAAAGCGTTTGGATTCTGG..................................................	19	1	10.00	0.00	0.00	0.00	10.00
.......................................................TTTAGAATTCCTACGCxTTACCG.......................................................................................	22	1	9.00	0.00	0.00	8.00	1.00
.......................................................TTTACAATTCCTACGCTTTACC........................................................................................	22	1	9.00	0.00	0.00	5.00	4.00
................................................................................................CAAAGAGTTTGGATTCTGAAAC...............................................	22	1	9.00	1.00	0.00	6.00	2.00
.......................................................TTTAGACTTCCTACGCTTTACC........................................................................................	22	1	9.00	0.00	0.00	1.00	8.00
......................................................TTTTAGAATTCCTACGCTTT...........................................................................................	20	1	9.00	0.00	0.00	2.00	7.00
................................................................................................TAAAGCGTTTGGATTCTGAAAC...............................................	22	1	8.00	0.00	0.00	4.00	4.00
.......................................................CTTAGAATTCCTACGCTTTAC.........................................................................................	21	1	8.00	0.00	0.00	5.00	3.00
................................................................................................CAAGGCGTTTGGATTCTGAAA................................................	21	1	8.00	0.00	0.00	0.00	8.00
.......................................................TTTATAATTCCTACGCTTTACC........................................................................................	22	1	8.00	0.00	0.00	3.00	5.00
.......................................................TTTAGAATTCCTACGCTTTTCC........................................................................................	22	1	8.00	0.00	0.00	4.00	4.00

droVir3

AACT----TTT---AAT---------------------AATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTCGGTAACA-------------------ACAAAAACAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	1	4710.00	4.00	287.00	11.00	73.00	4335.00
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	1	562.00	1.00	91.00	1.00	5.00	464.00
................................................................................................CAAAGCGTTTGGATTCTGAAA................................................	21	1	509.00	3.00	18.00	0.00	18.00	470.00
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	1	468.00	5.00	26.00	6.00	8.00	423.00
................................................................................................CAAAGCGTTTGGATTCTGAAACT..............................................	23	1	61.00	0.00	2.00	0.00	0.00	59.00
................................................................................................CAAAGCGTTTGGATTCTGAA.................................................	20	1	58.00	0.00	8.00	0.00	1.00	49.00
.......................................................TTTAGAATTCCTACGCTTT...........................................................................................	19	1	34.00	0.00	2.00	0.00	1.00	31.00
.......................................................TTTAGAATTCCTACGCTTTA..........................................................................................	20	1	28.00	1.00	9.00	0.00	0.00	18.00
.......................................................TTTAGAATTCCTACGCTTTACCT.......................................................................................	23	1	26.00	0.00	0.00	0.00	0.00	26.00
................................................................................................CAAAGCGTTTGGATTCTGA..................................................	19	1	21.00	1.00	2.00	0.00	0.00	18.00
.......................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................	23	1	15.00	0.00	3.00	0.00	3.00	9.00
................................................................................................CAAAGCGTTTGGATTCTGAAACC..............................................	23	1	15.00	0.00	1.00	0.00	0.00	14.00
................................................................................................CAAAGCGTTTGGATTCTT...................................................	18	1	14.00	0.00	0.00	0.00	0.00	14.00
................................................................................................CAAAGCGTTTGGATTCTGAAACA..............................................	23	1	12.00	1.00	2.00	0.00	1.00	8.00
.......................................................TTTAGAATTCCTACGCTT............................................................................................	18	1	11.00	0.00	0.00	0.00	0.00	11.00
.......................................................TTTAGAATTTCTACGCTTTACC........................................................................................	22	1	9.00	0.00	2.00	0.00	0.00	7.00
.......................................................TTTAGAATTCCTACGCTTTAAC........................................................................................	22	1	9.00	0.00	0.00	0.00	0.00	9.00
.......................................................TTTAGAATTCCTACTCTTTACC........................................................................................	22	1	9.00	0.00	5.00	0.00	0.00	4.00
...............................................................................................GCAAAGCGTTTGGATTCTGAA.................................................	21	1	7.00	0.00	0.00	1.00	1.00	5.00
.......................................................TTTAGAATTCCTACGCTTTGCC........................................................................................	22	1	7.00	0.00	1.00	0.00	0.00	6.00
.......................................................TTTAGAATTCCTACGCTTTCCC........................................................................................	22	1	7.00	0.00	1.00	1.00	0.00	5.00
................................................................................................CAAAGCGTTTGGATTCTGAAAA...............................................	22	1	6.00	1.00	0.00	0.00	1.00	4.00
................................................................................................CAAAGCGTTTGGATTCTTAAAC...............................................	22	1	6.00	0.00	1.00	1.00	0.00	4.00
.......................................................TTTAGAATTCCCACGCTTTACC........................................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................TTTAGAATTCCTACGCCTTACC........................................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
.................................................................................................AAAGCGTTTGGATTCTGAAAC...............................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................TTTAGAATTCCTACGCTTTACA........................................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................TTTAGAATTCCTACxCTTTACC........................................................................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................TTTAGACTTCCTACGCTTTACC........................................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
................................................................................................CAAAGCGTTTGGATTCTGG..................................................	19	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................CTTAGAATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	1.00	0.00	0.00	2.00
.......................................................TTTAGAATTCCTACTCTTTAC.........................................................................................	21	1	3.00	0.00	1.00	0.00	0.00	2.00
.......................................................TTTAGAATTCCTACGCTTTACCA.......................................................................................	23	1	3.00	0.00	2.00	0.00	0.00	1.00
.......................................................TTTAGAATTCCTACACTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
..................................................................................................AAGCGTTTGGATTCTGAAAC...............................................	20	1	3.00	0.00	0.00	0.00	0.00	3.00
......................................................CTTTAGAATTCCTACGCTTTACC........................................................................................	23	1	3.00	0.00	1.00	1.00	0.00	1.00
.......................................................TTTAGAGTTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................TTGAGAATTCCTACGCTTTACC........................................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACCC.......................................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00

droMoj3

----------------------------------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATA-------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	1	719.00	56.00	392.00	219.00	52.00
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	1	209.00	48.00	105.00	48.00	8.00
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	1	77.00	5.00	41.00	28.00	3.00
................................................................................................CAAAGCGTTTGGATTCTGAAA................................................	21	1	60.00	6.00	40.00	12.00	2.00
.......................................................TTTAGAATTCCTACGCTTTA..........................................................................................	20	1	18.00	1.00	12.00	5.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAACA..............................................	23	1	14.00	7.00	6.00	1.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGA..................................................	19	1	10.00	5.00	3.00	2.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAAACT..............................................	23	1	9.00	0.00	6.00	3.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGAA.................................................	20	1	8.00	5.00	2.00	1.00	0.00
................................................................................................CAAAGCGTTTGGATTCTGGAAC...............................................	22	1	8.00	0.00	0.00	8.00	0.00
.......................................................TTTAGAATTCCTACGCTTTGCC........................................................................................	22	1	7.00	1.00	4.00	1.00	1.00
.......................................................TTTAGAATTCCTACGCTTT...........................................................................................	19	1	5.00	0.00	4.00	1.00	0.00
.......................................................TTTAGAATTCCTACGCTTTCCC........................................................................................	22	1	4.00	0.00	1.00	3.00	0.00
.......................................................TTTAGAATTCCTACGCCTTACC........................................................................................	22	1	3.00	0.00	0.00	2.00	1.00
...............................................................................................GCAAAGCGTTTGGATTCTGAAA................................................	22	1	3.00	1.00	2.00	0.00	0.00
.......................................................TTTAGAATTCCTAAGCTTTACC........................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................TTTAGAATTCCTACTCTTTACC........................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.......................................................TTTAGAATTCCTACGCTTTATC........................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................TTTAGAATTCCTACGCTTTACA........................................................................................	22	1	3.00	0.00	3.00	0.00	0.00

droGri2

GATA----GTAGTTTAC---------------------CGTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTGGTCAGAA-------------------------AC----A	Size	Hit Count	Total Norm	V109 Male body
................................................................................................CAAAGCGTTTGGATTCTGAAAC...............................................	22	1	11.00	11.00
.......................................................TTTAGAATTCCTACGCTTTACC........................................................................................	22	1	4.00	4.00
................................................................................................CAAAGCGTTTGGATTCTGAAAG...............................................	22	1	1.00	1.00
.......................................................TTTAGAATTCCTACGCTTTAC.........................................................................................	21	1	1.00	1.00
................................................................................................CTAAGCGTTTGGATTCTGAAACA..............................................	23	1	1.00	1.00
................................................................................................CAAAGTGTTTGGATTCTGAAAC...............................................	22	1	1.00	1.00

Generated: 04/20/2012 at 05:20:10 EDT

dme-mir-927

chrX:15859980-15860071 -

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup