dme-mir-927- 12- and 20-way alignments

dme-mir-927	chrX:15859980-15860071 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 15860035-15860056
   star strand at position 15859995-15860016
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:15859965-15860086 -	GGCAATATTAAATTGTGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATC-------ATGTTAAAAAAAA
droSim1	chrX:12269401-12269519 -	AGCCATATTAAATTGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATC-------ATGTTATTA---A
droSec1	super_37:439538-439656 -	GGCAATATTAAATTGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATC-------ATGTTATTA---A
droYak2	chrX:10049093-10049217 -	GGCAGTTAAAAATTGTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACC-ATATTATTA---A
droEre2	scaffold_4690:11188754-11188872 +	GGCAATAATAAATTGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATC-------ATATTATTA---A
droAna3	scaffold_13250:3108664-3108784 +	T--------AAAAAAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAATGTGTTTTCATAAATA
dp4	Unknown_group_79:17437-17547 +	ATAGATAG-ATAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCAT---------------TCA---A
droPer1	super_192:48564-48674 +	ATAGATAG-ATAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCAT---------------TCA---A
droWil1	scaffold_180777:2521622-2521707 -	C--AATCTGACATTG--------GTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTA---------------------------------
droVir3	scaffold_12970:3343533-3343627 -	AATAA----------TGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATG---------------------GTCG---G
droMoj3	Unknown	---------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATATCGATTTATCACG-------ATGT--TCG---A
droGri2	scaffold_15203:10526919-10527010 +	C-------------GTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTG---------------------GTCA---G

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:15859965-15860086 -	NA	GGCA----ATATTAAAT---------------------TGTGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCAT--------GTTAAAA-----AAA----A
droSim1	chrX:12269402-12269519 -	3	AGCC----ATATTAAAT---------------------TGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT--------GTTATTA-------------
droSec1	super_37:439539-439656 -	11	GGCA----ATATTAAAT---------------------TGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT--------GTTATTA-------------
droYak2	chrX:10049094-10049217 -	34	GGCA----GTTAAAAAT---------------------TGTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACCAT--ATTATT-------------A
droEre2	scaffold_4690:11188754-11188871 +	39	GGCA----ATAATAAAT---------------------TGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCAT--------ATTATTA-------------
droEug1	scf7180000409111:14061-14198 +	46	AGAACTATATATTAAATTGTTATAAATG-------CAGC-TGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAAGTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCGTTATCTT--------TTTATTA------AC----A
droBia1	scf7180000302126:1157191-1157325 +	3	CGAT----ATGTTAAATTGTTAAAAACA-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCCC--------TTGATTA------AC----A
droTak1	scf7180000415169:54687-54821 +	8	GTGG----GTATCAAATTGTTATAAATG-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCTT--------TTAATTA------AC----A
droEle1	scf7180000491044:230803-230920 +	1	GCTT----G--------------------------CACCTTGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAGTCCATTATCTT--------TTTATTC-----AAA----A
droRho1	scf7180000777033:165059-165189 +	1	TACA----A----------------ATGCGGCTTGCACCTTGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAATCCATTATCTT--------TTTATTAACAA-TAA----A
droFic1	scf7180000454038:1133641-1133743 -	38	C-------------------------------------TTTGGGTATTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCTT--------TTT-----------------
droKik1	scf7180000302230:275958-276095 -	9	CTAT----ATATT-----CTCATGAATTGGGCA--AGTCTGGGGCGTTGTAGGGCTTTAGAATTCCTACGCTTTACCGTGGCA-TTCGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGCGTCCGTGAGTAAAGAAAA--TT---T------GAA----A
droAna3	scaffold_13250:3108664-3108783 +	3	TAAA----A-----------------------------AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAATGTGTTTTCA------T-AAA----T
droBip1	scf7180000393580:5789-5909 -	16	AAAA----GTAACCAGA---------------------AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGC--TATGATATTTGGCAAAGCGTTTGGATTCTGGAACCCTACGTATTCATTTTTTT--------GTAAAAA-----GGG----A
dp4	Unknown_group_79:17437-17552 +	5	ATAG----ATAGA----------------------TAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTCA-------------------ACAAA----A
droPer1	super_192:48564-48679 +	10	ATAG----ATAGA----------------------TAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTCA-------------------ACAAA----A
droWil1	scaffold_180777:2521614-2521709 -	63	CACA----ATCTGACAT---------------------T--------GGTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCA-----------------------------------
droVir3	scaffold_12970:3343518-3343635 -	441	AACT----TTT---AAT---------------------AATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTCGGTAACA-------------------ACAAAAACAG
droMoj3	scaffold_6473:7790778-7790858 -	1283	----------------------------------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATA-------------------------------------------
droGri2	scaffold_15203:10526906-10527015 +	15	GATA----GTAGTTTAC---------------------CGTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTGGTCAGAA-------------------------AC----A

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

GGCAATATTAAATTGTGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATC-------ATGTTAAAAAAAA

Size

Hit Count

Total Norm

droSim1

AGCCATATTAAATTGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATC-------ATGTTATTA---A	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	57808.00	152.00	55264.00	439.00	1953.00
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	7670.00	20.00	6461.00	110.00	1079.00
.......................................................................CAAAGCGTTTGGATTCTGAAA......................................	21	1	5488.00	1.00	5025.00	104.00	358.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	4224.00	6.00	4152.00	20.00	46.00
......................................................................GCAAAGCGTTTGGATTCTGAAA......................................	22	1	1770.00	2.00	1385.00	40.00	343.00
..............................TTTAGAATTCCTACGCTTTACCG.............................................................................	23	1	1361.00	11.00	1265.00	13.00	72.00
.......................................................................CAAAGCGTTTGGATTCTGAAACA....................................	23	1	1057.00	11.00	945.00	22.00	79.00
.......................................................................CAAAGCGTTTGGATTCTGAAAA.....................................	22	1	811.00	0.00	775.00	11.00	25.00
.......................................................................CAAAGCGTTTGGATTCTGAA.......................................	20	1	558.00	0.00	520.00	9.00	29.00
......................................................................GCAAAGCGTTTGGATTCTGAA.......................................	21	1	258.00	0.00	236.00	5.00	17.00
.......................................................................CAAAGCGTTTGGATTCTGAAACT....................................	23	1	227.00	1.00	206.00	3.00	17.00
......................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................	23	1	183.00	0.00	131.00	1.00	51.00
..............................TTTAGAATTCCTACGCTTT.................................................................................	19	1	152.00	0.00	151.00	1.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGA........................................	19	1	145.00	0.00	142.00	0.00	3.00
..............................TTTAGAATTCCTACGCTTTGCC..............................................................................	22	1	107.00	2.00	101.00	1.00	3.00
..............................TTTAGAATTCCTACGCTTTA................................................................................	20	1	86.00	0.00	86.00	0.00	0.00
..............................TTTAGAATTCCTACGCTTTACCT.............................................................................	23	1	77.00	0.00	77.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAAAA....................................	23	1	74.00	0.00	70.00	1.00	3.00
..............................TTTAGAATTCCTACGCTT..................................................................................	18	1	60.00	0.00	60.00	0.00	0.00
..............................TTTAGAATTTCTACGCTTTACC..............................................................................	22	1	55.00	0.00	54.00	0.00	1.00
..............................TTTAGAATTCTTACGCTTTACC..............................................................................	22	1	54.00	0.00	51.00	0.00	3.00
..............................TTTAGAATTCCTACGCCTTACC..............................................................................	22	1	54.00	0.00	53.00	0.00	1.00
......................................................................GCAAAGCGTTTGGATTCTGA........................................	20	1	49.00	0.00	49.00	0.00	0.00
..............................TTTAGAATTCCCACGCTTTACC..............................................................................	22	1	42.00	0.00	41.00	0.00	1.00
..............................TTTAGAATTCCTACTCTTTACC..............................................................................	22	1	42.00	0.00	33.00	1.00	8.00
.......................................................................CAAAGCGTTTGGATTCTTAAAC.....................................	22	1	38.00	0.00	32.00	0.00	6.00
.......................................................................CAAAGCGTTTGGATTCTGAAACC....................................	23	1	36.00	0.00	32.00	0.00	4.00
..............................TTTAGAATTCCTACGCTTACC...............................................................................	21	1	35.00	0.00	34.00	0.00	1.00
..............................TTTAGAATTCCTACCCTTTACC..............................................................................	22	1	34.00	0.00	33.00	0.00	1.00
..............................TTTAGAATCCCTACGCTTTACC..............................................................................	22	1	33.00	0.00	31.00	0.00	2.00
.......................................................................CAAAGCGTTTGGATTCTGAAACAA...................................	24	1	33.00	0.00	27.00	2.00	4.00
..............................TTTAGAATTCCTACGCTTTAAC..............................................................................	22	1	31.00	1.00	30.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTT.........................................	18	1	31.00	0.00	31.00	0.00	0.00
..............................TTTAGAATTxCTACGCTTTACC..............................................................................	21	1	31.00	0.00	31.00	0.00	0.00
..............................CTTAGAATTCCTACGCTTTACC..............................................................................	22	1	29.00	0.00	26.00	0.00	3.00
...............................TTAGAATTCCTACGCTTTACC..............................................................................	21	1	28.00	0.00	27.00	1.00	0.00
....................................................GTGGCA-TACGAAATTCGG...........................................................	18	1	27.00	17.00	4.00	0.00	6.00
..............................TTTAGAATTCCTACACTTTACC..............................................................................	22	1	27.00	0.00	24.00	0.00	3.00
..............................TTTAGAATTCCTACGCTTTACT..............................................................................	22	1	25.00	0.00	22.00	2.00	1.00
..............................TTTAGAGTTCCTACGCTTTACC..............................................................................	22	1	24.00	0.00	23.00	0.00	1.00
...............................TTAGAATTCCTACGCTTTACCG.............................................................................	22	1	23.00	0.00	22.00	0.00	1.00
..............................TTTAGAATTACTACGCTTTACC..............................................................................	22	1	22.00	1.00	20.00	0.00	1.00
..............................TTTAGAATTCCTACGCTTTACCA.............................................................................	23	1	22.00	0.00	20.00	0.00	2.00
.......................................................................CAAAGCTTTTGGATTCTGAAA......................................	21	1	22.00	0.00	22.00	0.00	0.00
.......................................................................CAAAGCGTTTGTATTCTGAAAC.....................................	22	1	21.00	0.00	17.00	1.00	3.00
..............................TTTAGAATTCCTGCGCTTTACC..............................................................................	22	1	21.00	0.00	20.00	1.00	0.00
..............................TTTAAAATTCCTACGCTTTACC..............................................................................	22	1	19.00	0.00	18.00	1.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGG........................................	19	1	19.00	0.00	19.00	0.00	0.00
......................................................................GCAAAGCGTTTGGATTCTGAAAA.....................................	23	1	19.00	0.00	19.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAACG....................................	23	1	18.00	0.00	15.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATTCTAAAAC.....................................	22	1	17.00	0.00	13.00	0.00	4.00
..............................TTTAGAATTCCTACGCTTTACA..............................................................................	22	1	16.00	0.00	15.00	0.00	1.00
.......................................................................CAAGGCGTTTGGATTCTGAAAC.....................................	22	1	16.00	0.00	15.00	0.00	1.00
..............................TTTAGAATTCCTATGCTTTACC..............................................................................	22	1	16.00	0.00	15.00	0.00	1.00
..............................TTTAGAATTCCTACGCTTTATC..............................................................................	22	1	16.00	0.00	16.00	0.00	0.00
..............................TTTAGAACTCCTACGCTTTACC..............................................................................	22	1	15.00	0.00	14.00	0.00	1.00
.......................................................................CAAAGCGTTTCGATTCTGAAAC.....................................	22	1	15.00	0.00	14.00	0.00	1.00
.......................................................................CAAAGCGTTTGGATTCTGAAG......................................	21	1	15.00	0.00	14.00	0.00	1.00
..............................TTTAGAATTCCTACGATTTACC..............................................................................	22	1	14.00	1.00	13.00	0.00	0.00
........................................................................AAAGCGTTTGGATTCTGAAAC.....................................	21	1	14.00	0.00	14.00	0.00	0.00
..............................TTTAGAATTGCTACGCTTTACC..............................................................................	22	1	14.00	1.00	13.00	0.00	0.00
..............................TTTAGAATTCCTAAGCTTTACC..............................................................................	22	1	13.00	0.00	13.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAT......................................	21	1	13.00	0.00	13.00	0.00	0.00
..............................TTTAGGATTCCTACGCTTTACC..............................................................................	22	1	13.00	0.00	13.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAAT.....................................	22	1	13.00	0.00	13.00	0.00	0.00
..............................TTTAGAATTCGTACGCTTTACC..............................................................................	22	1	12.00	0.00	11.00	0.00	1.00
..............................TTTGGAATTCCTACGCTTTACC..............................................................................	22	1	12.00	1.00	11.00	0.00	0.00
..............................TTTAGAATTCCTACxCTTTACC..............................................................................	21	1	12.00	0.00	12.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTAAAC......................................	21	1	12.00	0.00	11.00	0.00	1.00
..............................TTTAGAATTCCTACGCTTTGC...............................................................................	21	1	12.00	0.00	12.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAGC.....................................	22	1	11.00	0.00	9.00	0.00	2.00
.......................................................................CAAAGCGTTTGGATTCTCAAAC.....................................	22	1	11.00	0.00	10.00	0.00	1.00
.......................................................................CAAAGCTTTTGGATTCTGAAAC.....................................	22	1	11.00	0.00	11.00	0.00	0.00
..............................TTTAGAATTCCTACxCTTTAC...............................................................................	20	1	11.00	0.00	11.00	0.00	0.00
......................................................................GCAAAGCGTTTGGATTCTG.........................................	19	1	10.00	0.00	10.00	0.00	0.00
..............................TTTAGAATTCCTACCCTTTAC...............................................................................	21	1	10.00	0.00	10.00	0.00	0.00
.........................................................................AAGCGTTTGGATTCTGAAAC.....................................	20	1	10.00	0.00	9.00	1.00	0.00
.......................................................................CAAGGCGTTTGGATTCTGAAA......................................	21	1	10.00	0.00	10.00	0.00	0.00
..........................................................................AGCGTTTGGATTCTGAAAC.....................................	19	1	10.00	0.00	10.00	0.00	0.00
..........................................................................AGCGTTTGGATTCTGAAA......................................	18	1	10.00	0.00	10.00	0.00	0.00
..............................TCTAGAATTCCTACGCTTTACC..............................................................................	22	1	10.00	0.00	10.00	0.00	0.00
..............................TTTAGAATTCCTACGCTCTACC..............................................................................	22	1	9.00	1.00	7.00	0.00	1.00
..............................TTTAGAATTCCTACGCTTTAA...............................................................................	21	1	9.00	0.00	9.00	0.00	0.00
.......................................................................CAAAGCGTTTTGATTCTGAAAC.....................................	22	1	9.00	0.00	6.00	0.00	3.00
.......................................................................CAAAGCGGTTGGATTCTGAAA......................................	21	1	9.00	0.00	8.00	1.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAT.......................................	20	1	9.00	0.00	9.00	0.00	0.00
..............................TTTAGAATTCCTACGCTTCACC..............................................................................	22	1	9.00	0.00	9.00	0.00	0.00
.......................................................................CAAAGCGTCTGGATTCTGAAAC.....................................	22	1	9.00	0.00	8.00	0.00	1.00
.......................................................................CAAAGCGTTTGGATTCTG.........................................	18	1	9.00	0.00	9.00	0.00	0.00
.............................CTTTAGAATTCCTACGCTTTACC..............................................................................	23	1	9.00	2.00	6.00	0.00	1.00
........................................................................AAAGCGTTTGGATTCTGAAA......................................	20	1	8.00	0.00	6.00	2.00	0.00
.......................................................................TAAAGCGTTTGGATTCTGAAAC.....................................	22	1	8.00	0.00	7.00	0.00	1.00
.......................................................................CAAAGCGxTTGGATTCTGAAAC.....................................	21	1	8.00	0.00	7.00	1.00	0.00
...........................................................................GCGTTTGGATTCTGAAAC.....................................	18	1	8.00	0.00	8.00	0.00	0.00
......................................................................TCAAAGCGTTTGGATTCTGAAAC.....................................	23	1	8.00	0.00	3.00	0.00	5.00
..............................TTTAGAATTCCTACGGTTTACC..............................................................................	22	1	7.00	0.00	7.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTAAAA......................................	21	1	7.00	1.00	4.00	0.00	2.00
..............................TTTAGAATTCCTACTCTTTAC...............................................................................	21	1	7.00	0.00	7.00	0.00	0.00
..............................GTTAGAATTCCTACGCTTTACC..............................................................................	22	1	7.00	0.00	7.00	0.00	0.00
.......................................................................CAAAGCGGTTGGATTCTGAAAC.....................................	22	1	7.00	0.00	7.00	0.00	0.00

droSec1

GGCAATATTAAATTGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATC-------ATGTTATTA---A	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	1096.00	26.00	84.00	986.00
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	721.00	56.00	229.00	436.00
.......................................................................CAAAGCGTTTGGATTCTGAAACA....................................	23	1	365.00	23.00	71.00	271.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	160.00	1.00	1.00	158.00
.......................................................................CAAAGCGTTTGGATTCTGAAA......................................	21	1	147.00	20.00	17.00	110.00
..............................TTTAGAATTCCTACGCTTTACCG.............................................................................	23	1	113.00	0.00	13.00	100.00
.......................................................................CAAAGCGTTTGGATTCTGA........................................	19	1	51.00	4.00	0.00	47.00
.......................................................................CAAAGCGTTTGGATTCTGAA.......................................	20	1	39.00	1.00	3.00	35.00
......................................................................GCAAAGCGTTTGGATTCTGAAA......................................	22	1	36.00	4.00	11.00	21.00
......................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................	23	1	32.00	1.00	23.00	8.00
.......................................................................CAAAGCGTTTGGATTCTGAAAA.....................................	22	1	28.00	1.00	5.00	22.00
.......................................................................CAAAGCGTTTGGATTCTGAAACT....................................	23	1	23.00	0.00	4.00	19.00
....................................................GTCGCA-TACGAAATTCGG...........................................................	18	1	18.00	0.00	10.00	8.00
..............................TTTAGAATTCCTACGCTTTA................................................................................	20	1	15.00	1.00	0.00	14.00
......................................................................GCAAAGCGTTTGGATTCTGA........................................	20	1	14.00	3.00	1.00	10.00
.......................................................................CAAAGCGTTTGGATTCTG.........................................	18	1	13.00	0.00	0.00	13.00
..............................TTTAGAATTCCTACGCTTTACCGT............................................................................	24	1	12.00	0.00	0.00	12.00
......................................................................GCAAAGCGTTTGGATTCTGAA.......................................	21	1	12.00	1.00	1.00	10.00
........................................................................AAAGCGTTTGGATTCTGAAAC.....................................	21	1	10.00	0.00	4.00	6.00
.......................................................................CAAAGCGTTTGGATTCTGT........................................	19	1	10.00	1.00	0.00	9.00
.......................................................................CAAAGCGTTTGGATTCTGAAAAA....................................	23	1	8.00	1.00	0.00	7.00
...AATATTAAATTATGGAAG.............................................................................................................	18	1	8.00	0.00	7.00	1.00
..............................TTTAGAATTCCTGCGCTTTACC..............................................................................	22	1	6.00	1.00	0.00	5.00
.......................................................................CAAAGCGTTTGGATTCTAAAAC.....................................	22	1	4.00	0.00	1.00	3.00
......................................................................GCAAAGCGTTTGGATTCTG.........................................	19	1	4.00	0.00	0.00	4.00
..............................TTTAGAATTCCTATGCTTTACC..............................................................................	22	1	4.00	0.00	2.00	2.00
.......................................................................CAAAGCGTTTGGATTCTGAAACG....................................	23	1	4.00	1.00	1.00	2.00
..............................TTTAGAATCCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	3.00
..........AATTGTGGATGCTGTAGAGT....................................................................................................	20	1	3.00	0.00	0.00	3.00
..............................ATTAGAATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	3.00
.............................CTTTAGAATTCCTACGCTTTACC..............................................................................	23	1	3.00	0.00	0.00	3.00
..............................TTTAGAATTCCTACGCTTCACC..............................................................................	22	1	3.00	0.00	0.00	3.00

droYak2

GGCAGTTAAAAATTGTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACC-ATATTATTA---A	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	12041.00	74.00	109.00	16.00	266.00	11576.00
.......................................................................CAAAGCGTTTGGATTCTGAAA......................................	21	1	1994.00	2.00	15.00	13.00	67.00	1897.00
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	1940.00	13.00	36.00	43.00	136.00	1712.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	1077.00	2.00	14.00	1.00	42.00	1018.00
......................................................................GCAAAGCGTTTGGATTCTGAAA......................................	22	1	872.00	0.00	1.00	3.00	4.00	864.00
..............................TTTAGAATTCCTACGCTTTACCG.............................................................................	23	1	398.00	11.00	6.00	0.00	8.00	373.00
.......................................................................CAAAGCGTTTGGATTCTGAAACT....................................	23	1	367.00	0.00	3.00	5.00	17.00	342.00
.......................................................................CAAAGCGTTTGGATTCTGAAACA....................................	23	1	354.00	6.00	11.00	23.00	46.00	268.00
.......................................................................CAAAGCGTTTGGATTCTGAA.......................................	20	1	249.00	0.00	6.00	2.00	14.00	227.00
.......................................................................CAAAGCGTTTGGATTCTGAAAA.....................................	22	1	218.00	0.00	3.00	2.00	4.00	209.00
.......................................................................CAAAGCGTTTGGATTCTGA........................................	19	1	115.00	0.00	2.00	3.00	9.00	101.00
......................................................................GCAAAGCGTTTGGATTCTGAA.......................................	21	1	115.00	0.00	1.00	0.00	1.00	113.00
....................................................GTCGCA-TACGAAATTCGG...........................................................	18	1	82.00	2.00	1.00	0.00	1.00	78.00
......................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................	23	1	40.00	0.00	1.00	0.00	1.00	38.00
..............................TTTAGAATTCCTACGCTTTGCC..............................................................................	22	1	30.00	0.00	0.00	0.00	1.00	29.00
..............................TTTAGAATTCCTACGCTTTAAC..............................................................................	22	1	27.00	0.00	0.00	0.00	0.00	27.00
..............................TTTAGAATTCCTACGCTTTACCT.............................................................................	23	1	26.00	0.00	0.00	0.00	1.00	25.00
..............................TTTAGAATTCTTACGCTTTACC..............................................................................	22	1	23.00	0.00	0.00	0.00	0.00	23.00
......................................................................GCAAAGCGTTTGGATTCTGA........................................	20	1	20.00	0.00	0.00	0.00	2.00	18.00
..............................TTTAGAATTCCTACGCTTT.................................................................................	19	1	18.00	0.00	0.00	0.00	0.00	18.00
..............................TTTAGAATTTCTACGCTTTACC..............................................................................	22	1	17.00	0.00	0.00	0.00	0.00	17.00
.......................................................................CAAAGCGTTTGGATTCTGAAACC....................................	23	1	16.00	0.00	0.00	0.00	2.00	14.00
.......................................................................CAAAGCGTTTGGATTCTGG........................................	19	1	16.00	0.00	0.00	0.00	0.00	16.00
.......................................................................CAAAGCGTTTGGATTCTGAAAAA....................................	23	1	15.00	0.00	0.00	0.00	1.00	14.00
...............................TTAGAATTCCTACGCTTTACCG.............................................................................	22	1	15.00	0.00	0.00	0.00	1.00	14.00
.........................................................................AAGCGTTTGGATTCTGAAAC.....................................	20	1	14.00	0.00	0.00	0.00	1.00	13.00
............TTGTGGGCGCTGTAGAGT....................................................................................................	18	1	14.00	0.00	1.00	0.00	2.00	11.00
........................................................................AAAGCGTTTGGATTCTGAAAC.....................................	21	1	13.00	3.00	0.00	1.00	0.00	9.00
..............................TTTAGAATTCCTACGCTTTA................................................................................	20	1	13.00	0.00	2.00	0.00	1.00	10.00
..............................TTTAGAATTCCTACGCTTTCCC..............................................................................	22	1	13.00	0.00	0.00	0.00	1.00	12.00
..............................TTTAGAATTCCTACCCTTTACC..............................................................................	22	1	12.00	0.00	1.00	0.00	3.00	8.00
.......................................................................CAAAGCGTTTGGATTCTTAAAC.....................................	22	1	12.00	0.00	1.00	0.00	0.00	11.00
.......................................................................CAAAGCGTTTGGATTCTG.........................................	18	1	12.00	0.00	3.00	0.00	5.00	4.00
..............................TTTAGAATTACTACGCTTTACC..............................................................................	22	1	12.00	0.00	0.00	0.00	0.00	12.00
..............................TTTAGAATTCCCACGCTTTACC..............................................................................	22	1	11.00	0.00	0.00	0.00	0.00	11.00
..............................TTTAGAATTCCTACTCTTTACC..............................................................................	22	1	10.00	0.00	0.00	0.00	0.00	10.00
...............................TTAGAATTCCTACGCTTTACC..............................................................................	21	1	10.00	2.00	0.00	0.00	1.00	7.00
..............................TTTAGAATTCCTACGCCTTACC..............................................................................	22	1	10.00	0.00	0.00	0.00	2.00	8.00
..............................CTTAGAATTCCTACGCTTTACC..............................................................................	22	1	9.00	1.00	0.00	0.00	2.00	6.00
.......................................................................CAAAGCGTTTGGATTCTGAAACAA...................................	24	1	9.00	0.00	0.00	0.00	1.00	8.00
.......................................................................CAAAGCGTTTGGATTCTGAAACG....................................	23	1	8.00	0.00	0.00	0.00	0.00	8.00
..............................TTTAGAATTCCTACGCTTACC...............................................................................	21	1	7.00	0.00	0.00	0.00	0.00	7.00
.......................................................................CAAAGCGTTTGGATTCTGCAA......................................	21	1	7.00	0.00	0.00	0.00	0.00	7.00
.......................................................................CAAAGCGTTTGGATTCTCAAAC.....................................	22	1	7.00	0.00	0.00	0.00	0.00	7.00
.......................................................................CAAAGCTTTTGGATTCTGAAA......................................	21	1	7.00	0.00	0.00	0.00	0.00	7.00
..............................TTTAGAATTCCTACGCTTTACCC.............................................................................	23	1	7.00	0.00	0.00	0.00	0.00	7.00
.......................................................................CAAAGCGTTTGGATTCTT.........................................	18	1	7.00	0.00	0.00	0.00	1.00	6.00
..............................TTTAGACTTCCTACGCTTTACC..............................................................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
..............................TTTAGAATTCCTGCGCTTTACC..............................................................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
.......................................................................CAAAGCGTTTGGATTCTGAAAT.....................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
.......................................................................CAAAGCGTTTGGATTCTGAAT......................................	21	1	6.00	0.00	0.00	0.00	1.00	5.00
..............................TTTAGAATCCCTACGCTTTACC..............................................................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
.......................................................................CAAAGCGTTTGGATTCTAAAAC.....................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
.......................................................................CAAAGCGTTTGGATTCTGACA......................................	21	1	6.00	0.00	0.00	0.00	4.00	2.00
..............................TTTAGAATTCCTACGCTTTACCGT............................................................................	24	1	6.00	0.00	2.00	0.00	3.00	1.00
..............................TTTAGAACTCCTACGCTTTACC..............................................................................	22	1	6.00	0.00	0.00	0.00	1.00	5.00
..............................TTTAGAATTxCTACGCTTTACC..............................................................................	21	1	6.00	0.00	0.00	0.00	0.00	6.00
.......................................................................CAAAGCGTTTGGATTCTGAAAG.....................................	22	1	5.00	0.00	1.00	0.00	0.00	4.00
......................................................................GCAAAGCGTTTGGATTCTGG........................................	20	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................................CAAAGCGTTTGGATTCTGACAC.....................................	22	1	5.00	0.00	1.00	0.00	2.00	2.00
...........ATTGTGGGCGCTGTAGAGT....................................................................................................	19	1	5.00	0.00	1.00	0.00	1.00	3.00
.......................................................................CAAGGCGTTTGGATTCTGAAA......................................	21	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................................CAAAGCGTTTGGATTCTGAAG......................................	21	1	5.00	0.00	0.00	0.00	0.00	5.00
..............................TTTAGAATTCCTACGCTT..................................................................................	18	1	5.00	0.00	0.00	0.00	0.00	5.00
..............................TTTAGAGTTCCTACGCTTTACC..............................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
..............................TTGAGAATTCCTACGCTTTACC..............................................................................	22	1	5.00	0.00	0.00	0.00	4.00	1.00
.......................................................................CAAAGCGTTTGGTTTCTGAAAC.....................................	22	1	5.00	0.00	0.00	0.00	5.00	0.00
..............................TTTAGAATTCCTACGCTTTACT..............................................................................	22	1	5.00	0.00	0.00	0.00	1.00	4.00
..............................TTTAGAATTCCTACACTTTACC..............................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
............................GTTTTAGAATTCCTACGCTTT.................................................................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
..............................TTTAGAATTCCTACGCTTTCC...............................................................................	21	1	4.00	0.00	0.00	0.00	1.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGAC.......................................	20	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................................CAAAGCGTTTGTATTCTGAAAC.....................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
..............................TTTAGAATTCATACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	0.00	1.00	3.00
.......................................................................CAAAGCTTTTGGATTCTGAAAC.....................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
..............................TTTAGGATTCCTACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
..............................TTTAGAATTGCTACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
..............................TTTAGAATTCCTACGCTCTACC..............................................................................	22	1	4.00	0.00	0.00	0.00	1.00	3.00
.......................................................................CAAAGCGTTTGCATTCTGAAAC.....................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
..............................TCTAGAATTCCTACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................................CAAAGCGTTTGGATTCTGAT.......................................	20	1	4.00	0.00	0.00	0.00	1.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGAAC......................................	21	1	4.00	0.00	0.00	0.00	2.00	2.00
.......................................................................CAAAGCGTTTGGATTCTGGAAC.....................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
..............................TTTAGAATTCCTACGCTTTG................................................................................	20	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................................CAAAGCGTTTAGATTCTGAAAC.....................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
..............................TTTAGAATTCCTACGCTTTACA..............................................................................	22	1	3.00	0.00	1.00	0.00	0.00	2.00
.......................................................................CAAAGCGGTTGGATTCTGAAAC.....................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
............................GTTTTAGAATTCCTACGCTTTA................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGTAA......................................	21	1	3.00	0.00	0.00	0.00	1.00	2.00
......................................................................TCAAAGCGTTTGGATTCTGAAA......................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................................................................AGCGTTTGGATTCTGAAACCC...................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTCCTACGTTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................CAGAGCGTTTGGATTCTGAAA......................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGAAACTT...................................	24	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGCAAC.....................................	22	1	3.00	0.00	1.00	0.00	0.00	2.00
..............................TTTAAAATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
..............................TTTAGCATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
..............................TTTAGAATTCCTACGCTTTACCA.............................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
......................................................................GCAAAGCGTTTGGATTCTAAAA......................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................TAAAGCGTTTGGATTCTGAAAC.....................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
......................................................................GCAAAGCGTTTGGATTCTG.........................................	19	1	3.00	0.00	0.00	0.00	2.00	1.00

droEre2

GGCAATAATAAATTGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATC-------ATATTATTA---A	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	3245.00	98.00	167.00	11.00	2969.00
.......................................................................CAAAGCGTTTGGATTCTGAAACA....................................	23	1	726.00	11.00	16.00	0.00	699.00
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	696.00	31.00	80.00	6.00	579.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	480.00	7.00	35.00	1.00	437.00
....................................................GTGGCA-TACGAAATTCGG...........................................................	18	1	231.00	10.00	6.00	0.00	215.00
..............................TTTAGAATTCCTACGCTTTACCG.............................................................................	23	1	203.00	11.00	2.00	0.00	190.00
.......................................................................CAAAGCGTTTGGATTCTGAAA......................................	21	1	152.00	4.00	7.00	0.00	141.00
......................................................................GCAAAGCGTTTGGATTCTGAAA......................................	22	1	81.00	4.00	3.00	0.00	74.00
.......................................................................CAAAGCGTTTGGATTCTGAA.......................................	20	1	75.00	0.00	1.00	0.00	74.00
.......................................................................CAAAGCGTTTGGATTCTGAAACT....................................	23	1	69.00	0.00	0.00	0.00	69.00
.......................................................................CAAAGCGTTTGGATTCTG.........................................	18	1	55.00	0.00	1.00	0.00	54.00
.......................................................................CAAAGCGTTTGGATTCTGAAAA.....................................	22	1	52.00	0.00	5.00	0.00	47.00
.......................................................................CAAAGCGTTTGGATTCTGA........................................	19	1	41.00	0.00	2.00	0.00	39.00
..............................TTTAGAATTCCTACGCTTTA................................................................................	20	1	36.00	0.00	2.00	0.00	34.00
......................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................	23	1	32.00	4.00	7.00	0.00	21.00
..............................TTTAGAATTCCTACTCTTTACC..............................................................................	22	1	28.00	4.00	1.00	0.00	23.00
..............................TTTAGAATTCCTACGCTTTACA..............................................................................	22	1	24.00	1.00	0.00	0.00	23.00
..............................TTTAGAATTCCTACGATTTACC..............................................................................	22	1	22.00	0.00	0.00	0.00	22.00
..............................TTTATAATTCCTACGCTTTACC..............................................................................	22	1	17.00	0.00	0.00	0.00	17.00
.......................................................................CAAAGCGTTTGGATTCTGAAACG....................................	23	1	17.00	0.00	0.00	0.00	17.00
..............................TTTAGAATTCATACGCTTTACC..............................................................................	22	1	16.00	0.00	0.00	0.00	16.00
..............................TTTAGAATTACTACGCTTTACC..............................................................................	22	1	15.00	0.00	0.00	0.00	15.00
.......................................................................CAAAGCGTTTGGATTCTGT........................................	19	1	14.00	0.00	1.00	0.00	13.00
.......................................................................CAAAGCGTTTGGATTCTGAAAAA....................................	23	1	13.00	0.00	0.00	0.00	13.00
..............................TTTGGAATTCCTACGCTTTACC..............................................................................	22	1	13.00	0.00	1.00	0.00	12.00
.......................................................................CAAAGCGTTTGGATTCTGAAACAA...................................	24	1	12.00	0.00	1.00	0.00	11.00
....................................................GTGGCA-TACGAAATTCGGT..........................................................	19	1	11.00	2.00	0.00	0.00	9.00
.......................................................................CAAAGCGTTTGGATTCTGAAACC....................................	23	1	11.00	0.00	1.00	0.00	10.00
.......................................................................AAAAGCGTTTGGATTCTGAAACA....................................	23	1	11.00	0.00	0.00	0.00	11.00
........................................................................AAAGCGTTTGGATTCTGAAAC.....................................	21	1	10.00	0.00	1.00	0.00	9.00
..............................TTTAGAATTCCTAAGCTTTACC..............................................................................	22	1	10.00	0.00	0.00	0.00	10.00
..............................TTTAGAATTCCTACGCTTTAAC..............................................................................	22	1	9.00	0.00	0.00	0.00	9.00
......................................................................GCAAAGCGTTTGGATTCTGAA.......................................	21	1	9.00	0.00	0.00	1.00	8.00
.......................................................................CAAAGCGTTTTGATTCTGAAAC.....................................	22	1	9.00	0.00	0.00	0.00	9.00
..............................TTTATAATTCCTACGCTTTAC...............................................................................	21	1	9.00	0.00	0.00	0.00	9.00
.............................CTTTAGAATTCCTACGCTTTACC..............................................................................	23	1	9.00	0.00	0.00	1.00	8.00
..............................TTTAGAATTCCTACGCTTT.................................................................................	19	1	8.00	0.00	0.00	0.00	8.00
.......................................................................CAAAGCGTTTGGATTCTTAAAC.....................................	22	1	8.00	2.00	0.00	1.00	5.00
.......................................................................CAAAGCGTTTGTATTCTGAAACA....................................	23	1	8.00	0.00	1.00	0.00	7.00
......................................................................GCAAAGCGTTTGGATTCTGA........................................	20	1	7.00	0.00	0.00	0.00	7.00
..............................TTTAGAATTCCTACGCTTTCCC..............................................................................	22	1	7.00	0.00	2.00	1.00	4.00
.......................................................................CAAAGCGTTTGGATTCTTAAACA....................................	23	1	7.00	0.00	0.00	0.00	7.00
.......................................................................AAAAGCGTTTGGATTCTGAAAC.....................................	22	1	7.00	0.00	0.00	0.00	7.00
.......................................................................CAAATCGTTTGGATTCTGAAAC.....................................	22	1	6.00	0.00	0.00	0.00	6.00
........................................................................AAAGCGTTTGGATTCTGAAACA....................................	22	1	6.00	0.00	0.00	0.00	6.00
..............................TTTAGAATTTCTACGCTTTACC..............................................................................	22	1	6.00	0.00	0.00	0.00	6.00
.......................................................................CAAAGCGTTTTGATTCTGAAACA....................................	23	1	6.00	0.00	0.00	0.00	6.00
..............................TTTAGAATTCCTACGCCTTACC..............................................................................	22	1	6.00	1.00	1.00	0.00	4.00
..............................TTTAGAATTCCTATGCTTTACC..............................................................................	22	1	5.00	0.00	2.00	0.00	3.00
....................................................GTGGCA-TACTAAATTCGG...........................................................	18	1	5.00	0.00	0.00	0.00	5.00
..............................TTAAGAATTCCTACGCTTTACC..............................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..............................TTCAGAATTCCTACGCTTTACC..............................................................................	22	1	5.00	1.00	0.00	0.00	4.00
..............................TTTAGAATTCTTACGCTTTACC..............................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..............................TTTAGAATTCCTCCGCTTTACC..............................................................................	22	1	4.00	1.00	0.00	0.00	3.00
..............................TTTAGAATTCCTACGCTTACC...............................................................................	21	1	4.00	0.00	1.00	0.00	3.00
.......................................................................CAAAGAGTTTGGATTCTGAAACA....................................	23	1	4.00	0.00	0.00	0.00	4.00
.......................................................................CAAAGCGTTTGGATTCTGAAAT.....................................	22	1	4.00	0.00	0.00	0.00	4.00
.......................................................................AAAAGCGTTTGGATTCTG.........................................	18	1	4.00	0.00	0.00	0.00	4.00
.......................................................................CAAAGCTTTTGGATTCTGAAAC.....................................	22	1	4.00	0.00	0.00	0.00	4.00
..............................CTTAGAATTCCTACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..............................TTTAGAATTCCTACTCTTTAC...............................................................................	21	1	4.00	0.00	0.00	0.00	4.00
.......................................................................CAAAGCGTTTGGATTATGAAAC.....................................	22	1	4.00	0.00	0.00	0.00	4.00
..............................TTTAGAATTCCTACGCTTTACCGT............................................................................	24	1	4.00	0.00	0.00	0.00	4.00
.......................................................................CAAAGCGTTTGGATTATGAAACA....................................	23	1	4.00	0.00	0.00	0.00	4.00
..............................TTTAGAATTCCTACGATTTAC...............................................................................	21	1	4.00	0.00	1.00	0.00	3.00
.............................CTTTAGAATTCCTACGCTTTAC...............................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.........................................................................AAGCGTTTGGATTCTGAAAC.....................................	20	1	3.00	1.00	0.00	0.00	2.00
....................................................GTGTCA-TACGAAATTCGG...........................................................	18	1	3.00	0.00	0.00	0.00	3.00
.......................................................................CGAAGCGTTTGGATTCTGAAAC.....................................	22	1	3.00	0.00	1.00	0.00	2.00
.......................................................................CAAAGAGTTTGGATTCTGAAA......................................	21	1	3.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTCCxACGCTTTACC..............................................................................	21	1	3.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTCCTGCGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTCCCACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATTCTCAAAC.....................................	22	1	3.00	0.00	1.00	0.00	2.00
.......................................................................CAAAGCGTTTGTATTCTGAAAC.....................................	22	1	3.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTCCTACGCTTTACCA.............................................................................	23	1	3.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTCCTACGCTT..................................................................................	18	1	3.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGAGTTTGGATTCTGAAAC.....................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................................TAAAGCGTTTGGATTCTGAAAC.....................................	22	1	3.00	1.00	0.00	0.00	2.00
..............................TTTAGAGTTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..............................TTGAGAATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..............................TTTACAATTCCTACGCTTTACC..............................................................................	22	1	3.00	1.00	0.00	0.00	2.00
..............................TTCAGAATTCCTACGCTTTAC...............................................................................	21	1	3.00	0.00	1.00	0.00	2.00
..............................TTTAGAATCCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..............................TTTAGGATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTCCTACGCTTTAA...............................................................................	21	1	3.00	1.00	0.00	0.00	2.00
................................TAGAATTCCTACGCTTTACC..............................................................................	20	1	3.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGGAACA....................................	23	1	3.00	0.00	0.00	0.00	3.00
..............................TCTAGAATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTCCTACGCTTTGCC..............................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.......................................................................CAAAGAGTTTGGATTCTGAAAA.....................................	22	1	3.00	0.00	0.00	0.00	3.00
...............................TTAGAATTCCTACGCTTTACC..............................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGCTTTTGGATTCTGAAACA....................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGGAAC.....................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATCCTGAAACA....................................	23	1	3.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTxCTACGCTTTACC..............................................................................	21	1	3.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTCCTACGCTTCACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00

droAna3

T--------AAAAAAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAATGTGTTTTCATAAATA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	2305.00	36.00	2091.00	140.00	38.00
.......................................................................CAAAGCGTTTGGATTCTGGAAC.....................................	22	1	2077.00	260.00	1321.00	484.00	12.00
.......................................................................CAAAGCGTTTGGATTCTGGAACA....................................	23	1	383.00	32.00	328.00	23.00	0.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	326.00	2.00	294.00	23.00	7.00
.......................................................................CAAAGCGTTTGGATTCTGGAA......................................	21	1	181.00	26.00	103.00	50.00	2.00
.......................................................................CAAAGCGTTTGGATTCTGGA.......................................	20	1	82.00	9.00	52.00	21.00	0.00
..............................TTTAGAATTCCTACGCTTTACCG.............................................................................	23	1	65.00	0.00	64.00	0.00	1.00
.......................................................................CAAAGCGTTTGGATTCTGG........................................	19	1	47.00	3.00	37.00	7.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGAACT....................................	23	1	44.00	3.00	37.00	4.00	0.00
..............................TTTAGAATTCCTACGCTTTA................................................................................	20	1	36.00	1.00	32.00	3.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGAAA.....................................	22	1	30.00	3.00	27.00	0.00	0.00
....................................................GTTGCA-TATGAAATTAGG...........................................................	18	1	25.00	0.00	24.00	0.00	1.00
......................................................................GCAAAGCGTTTGGATTCTGGAA......................................	22	1	24.00	0.00	23.00	1.00	0.00
..............................TTTAGAATTCCTACGCTTTGCC..............................................................................	22	1	24.00	0.00	21.00	3.00	0.00
..............................TTTGGAATTCCTACGCTTTACC..............................................................................	22	1	21.00	0.00	19.00	2.00	0.00
.......................................................................CAAATCGTTTGGATTCTGGAAC.....................................	22	1	21.00	4.00	17.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGAGC.....................................	22	1	20.00	5.00	12.00	3.00	0.00
..............................TTTAGAATTCCTACGATTTACC..............................................................................	22	1	18.00	0.00	18.00	0.00	0.00
..............................TTGAGAATTCCTACGCTTTACC..............................................................................	22	1	18.00	0.00	16.00	2.00	0.00
........................................................................AAAGCGTTTGGATTCTGGAAC.....................................	21	1	17.00	2.00	14.00	1.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGTAAC.....................................	22	1	14.00	2.00	10.00	2.00	0.00
..............................TTTAGAATTCCTACTCTTTACC..............................................................................	22	1	13.00	0.00	12.00	1.00	0.00
..............................TTTAGAATTCCTACGCTTT.................................................................................	19	1	13.00	0.00	12.00	1.00	0.00
..............................TTTAGAATTCCTACGCTTTACCGT............................................................................	24	1	13.00	0.00	12.00	1.00	0.00
..............................TTTAGAATTCCTACGCTTTACA..............................................................................	22	1	13.00	0.00	10.00	0.00	3.00
.......................................................................AAAAGCGTTTGGATTCTGGAAC.....................................	22	1	12.00	0.00	7.00	5.00	0.00
..............................TTTAGAATTCCTACGCTTTATC..............................................................................	22	1	12.00	0.00	11.00	1.00	0.00
..............................TTTATAATTCCTACGCTTTACC..............................................................................	22	1	11.00	0.00	8.00	2.00	1.00
.......................................................................CAAAGCGTTTGGATTCTGGAAT.....................................	22	1	11.00	1.00	7.00	3.00	0.00
......................................................................GCAAAGCGTTTGGATTCTGGA.......................................	21	1	11.00	0.00	7.00	4.00	0.00
.......................................................................CAAAGCGTTTGGATTATGGAAC.....................................	22	1	10.00	0.00	5.00	5.00	0.00
.......................................................................CAAAGCGTTTGTATTCTGGAAC.....................................	22	1	10.00	1.00	7.00	2.00	0.00
......................................................................GCAAAGCGTTTGGATTCTGG........................................	20	1	10.00	1.00	9.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGATC.....................................	22	1	9.00	3.00	2.00	4.00	0.00
.......................................................................CAAAGAGTTTGGATTCTGGAAC.....................................	22	1	9.00	3.00	4.00	2.00	0.00
..............................TTTAGAATTCCTACGCTTTAGC..............................................................................	22	1	9.00	2.00	6.00	0.00	1.00
.......................................................................CAAAGCGTTTTGATTCTGGAAC.....................................	22	1	9.00	3.00	6.00	0.00	0.00
.......................................................................CAAAGCGTTTGGCTTCTGGAAC.....................................	22	1	9.00	1.00	0.00	8.00	0.00
...............................TTAGAATTCCTACGCTTTACC..............................................................................	21	1	9.00	0.00	9.00	0.00	0.00
..............................TTTAGAATTCCTACGCTTTAAC..............................................................................	22	1	9.00	0.00	9.00	0.00	0.00
.......................................................................CAAGGCGTTTGGATTCTGGAAC.....................................	22	1	8.00	1.00	5.00	2.00	0.00
.......................................................................CAAAGCGTTTGGATTCTTGAAC.....................................	22	1	8.00	0.00	5.00	2.00	1.00
..............................TTTAGAATTCCTGCGCTTTACC..............................................................................	22	1	8.00	2.00	5.00	1.00	0.00
.......................................................................CAAAGCGTTTGGATTCTAGAAC.....................................	22	1	7.00	0.00	4.00	3.00	0.00
..............................TTTAGAATTCATACGCTTTACC..............................................................................	22	1	7.00	0.00	6.00	1.00	0.00
..............................TTTGGAATTCCTACGCTTTAC...............................................................................	21	1	6.00	0.00	6.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGAACG....................................	23	1	6.00	0.00	4.00	1.00	1.00
.......................................................................CAAAGCGTTTGGATTCTGGGAC.....................................	22	1	6.00	0.00	3.00	3.00	0.00
..............................TTGAGAATTCCTACGCTTTAC...............................................................................	21	1	6.00	0.00	6.00	0.00	0.00
..............................CTTAGAATTCCTACGCTTTACC..............................................................................	22	1	6.00	0.00	5.00	1.00	0.00
.......................................................................CAGAGCGTTTGGATTCTGGAAC.....................................	22	1	5.00	0.00	4.00	1.00	0.00
.......................................................................CAAAGCGTTTGGTTTCTGGAAC.....................................	22	1	5.00	1.00	0.00	4.00	0.00
.......................................................................CAAAGCGTTTCGATTCTGGAAC.....................................	22	1	5.00	0.00	2.00	3.00	0.00
........................................................................AAAGCGTTTGGATTCTGGAACA....................................	22	1	5.00	0.00	5.00	0.00	0.00
.......................................................................GAAAGCGTTTGGATTCTGGAAC.....................................	22	1	5.00	0.00	3.00	2.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGACC.....................................	22	1	5.00	2.00	3.00	0.00	0.00
..............................TTTAGAATTCCTACGCTTACC...............................................................................	21	1	5.00	0.00	5.00	0.00	0.00
..............................TTTAGAATTACTACGCTTTACC..............................................................................	22	1	5.00	0.00	4.00	1.00	0.00
.......................................................................CAAAGCGxTTGGATTCTGGAAC.....................................	21	1	5.00	2.00	3.00	0.00	0.00
..............................TTTAGAGTTCCTACGCTTTACC..............................................................................	22	1	4.00	0.00	3.00	1.00	0.00
.......................................................................CAAAGCGCTTGGATTCTGGAAC.....................................	22	1	4.00	0.00	1.00	3.00	0.00
.......................................................................CAAAGCGTTCGGATTCTGGAAC.....................................	22	1	4.00	1.00	2.00	1.00	0.00
..............................TTTAGAATTCCTACGATTTAC...............................................................................	21	1	4.00	0.00	4.00	0.00	0.00
..............................TTTAGAATTCCTACGCTTTACCGTT...........................................................................	25	1	4.00	0.00	4.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGAAAA....................................	23	1	4.00	1.00	2.00	1.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	4.00	0.00	2.00	1.00	1.00
..............................TTTAGAATTCCTAAGCTTTACC..............................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..............................TTTAGAATTCCTACGCTTCACC..............................................................................	22	1	4.00	0.00	1.00	3.00	0.00
.......................................................................TAAAGCGTTTGGATTCTGGAAC.....................................	22	1	4.00	0.00	2.00	2.00	0.00
.......................................................................CAAAGCTTTTGGATTCTGGAAC.....................................	22	1	4.00	0.00	4.00	0.00	0.00
......................................................................GCAAAGCGTTTGGATTCTGGAAA.....................................	23	1	4.00	0.00	4.00	0.00	0.00
..............................TTTAGAATTCCTACGCTTTGC...............................................................................	21	1	4.00	0.00	4.00	0.00	0.00
..............................TTTAGAATTCCTACGCTTTACT..............................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGCAAC.....................................	22	1	4.00	0.00	1.00	3.00	0.00
.......................................................................CAAAGCGTTAGGATTCTGGAAC.....................................	22	1	3.00	0.00	0.00	3.00	0.00
..............................TTTAGGATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................CGAAGCGTTTGGATTCTGGAAC.....................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................CAAAGCGTTTGCATTCTGGAAC.....................................	22	1	3.00	2.00	1.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAC......................................	21	1	3.00	0.00	3.00	0.00	0.00
.......................................................................CAAAGCGTTTGGGTTCTGGAAC.....................................	22	1	3.00	2.00	0.00	1.00	0.00
.......................................................................CAAAGCGTTTGGATTCTCGAAC.....................................	22	1	3.00	0.00	1.00	1.00	1.00
.......................................................................CAAAGCGTTTGGATTTTGGAAC.....................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGAG......................................	21	1	3.00	0.00	1.00	2.00	0.00
.......................................................................CAAAGCGTGTGGATTCTGGAAC.....................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................................CAAAGCGTTTAGATTCTGGAAC.....................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................CAAAGCGTTTGTATTCTGGAACA....................................	23	1	3.00	0.00	3.00	0.00	0.00
..............................TTTAGAATCCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..............................TTTAGAATTCTTACGCTTTACC..............................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATCCTGGAAC.....................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGT.......................................	20	1	3.00	0.00	2.00	1.00	0.00
..............................TTTAGAATTCCTACGCCTTACC..............................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..............................TTTAGAATTCCTATGCTTTACC..............................................................................	22	1	3.00	1.00	2.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTG.........................................	18	1	3.00	0.00	2.00	0.00	1.00
.......................................................................CAAAGCGGTTGGATTCTGGAAC.....................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAACA....................................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................CAAAGCGTTTGGATTCTTGAACA....................................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................CAAAGCGTTGGGATTCTGGAAC.....................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................................CAAAGCGGTGGGATTCTGGAAC.....................................	22	1	3.00	0.00	0.00	2.00	1.00
..............................TTTAGAATCCCTACGCTTTAC...............................................................................	21	1	3.00	0.00	3.00	0.00	0.00

dp4

ATAGATAG-ATAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCAT---------------TCA---A	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	575.00	21.00	228.00	299.00	27.00
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	501.00	48.00	112.00	323.00	18.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	204.00	3.00	36.00	161.00	4.00
.......................................................................CAAAGCGTTTGGATTCTGAAACA....................................	23	1	43.00	13.00	15.00	15.00	0.00
..............................TTTAGAATTCCTACGCTTTACCG.............................................................................	23	1	28.00	0.00	21.00	5.00	2.00
.......................................................................CAAAGCGTTTGGATTCTGAAA......................................	21	1	24.00	3.00	11.00	8.00	2.00
..............................TTTAGAATTCCTACGCTTTA................................................................................	20	1	12.00	0.00	2.00	10.00	0.00
......................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................	23	1	12.00	0.00	3.00	9.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAACC....................................	23	1	10.00	0.00	4.00	6.00	0.00
..............................TTTAGAATTCCTACGCTTTGCC..............................................................................	22	1	8.00	0.00	0.00	7.00	1.00
..............................TTTAGAATTCCTACGCTTT.................................................................................	19	1	8.00	0.00	2.00	6.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAA.......................................	20	1	8.00	0.00	2.00	6.00	0.00
..............................TTTAGAATTCCTACGCTTTACCGT............................................................................	24	1	7.00	0.00	1.00	6.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAACT....................................	23	1	7.00	2.00	2.00	3.00	0.00
..............................TTTAGAATTCCTACGCTTTATC..............................................................................	22	1	5.00	0.00	4.00	1.00	0.00
..............................TTTAGAATTCCTACGCTTTACA..............................................................................	22	1	4.00	0.00	3.00	1.00	0.00
......................................................................GCAAAGCGTTTGGATTCTGAAA......................................	22	1	4.00	1.00	0.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGA........................................	19	1	4.00	0.00	2.00	2.00	0.00
..............................TTTAGAATTCCTACCCTTTACC..............................................................................	22	1	4.00	0.00	0.00	4.00	0.00
.......................................................................CAAAGCGTTTGGTTTCTGAAAC.....................................	22	1	3.00	0.00	1.00	2.00	0.00
........................................................................AAAGCGTTTGGATTCTGAAAC.....................................	21	1	3.00	1.00	1.00	1.00	0.00
.......................................................................CAAGGCGTTTGGATTCTGAAAC.....................................	22	1	3.00	0.00	2.00	0.00	1.00
.......................................................................CAAAGCGTTTGGCTTCTGAAAC.....................................	22	1	3.00	0.00	2.00	1.00	0.00
..............................CTTAGAATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	1.00	1.00	1.00
.......................................................................CAAAGCGTTTGGATTCTGAACC.....................................	22	1	3.00	0.00	0.00	3.00	0.00
..............................TTTAGAATTCCTACGATTTACC..............................................................................	22	1	3.00	0.00	2.00	0.00	1.00
..............................TTTAGAATTCCTATGCTTTACC..............................................................................	22	1	3.00	0.00	2.00	1.00	0.00

droPer1

ATAGATAG-ATAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCAT---------------TCA---A	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	1826.00	78.00	25.00	426.00	629.00	668.00
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	1676.00	10.00	52.00	373.00	523.00	718.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	407.00	4.00	43.00	110.00	129.00	121.00
.......................................................................CAAAGCGTTTGGATTCTGAAA......................................	21	1	405.00	29.00	6.00	37.00	136.00	197.00
.......................................................................CAAAGCGTTTGGATTCTGAAACA....................................	23	1	121.00	11.00	1.00	17.00	67.00	25.00
.......................................................................CAAAGCGTTTGGATTCTGAAACC....................................	23	1	68.00	3.00	1.00	7.00	19.00	38.00
..............................TTTAGAATTCCTACGCTTTACCG.............................................................................	23	1	59.00	1.00	3.00	8.00	16.00	31.00
.......................................................................CAAAGCGTTTGGATTCTGAA.......................................	20	1	56.00	1.00	0.00	13.00	33.00	9.00
.......................................................................CAAAGCGTTTGGATTCTGA........................................	19	1	51.00	1.00	0.00	11.00	30.00	9.00
.......................................................................CAAAGCGTTTGGATTCTGAAACT....................................	23	1	49.00	2.00	0.00	6.00	18.00	23.00
......................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................	23	1	40.00	3.00	1.00	13.00	8.00	15.00
......................................................................GCAAAGCGTTTGGATTCTGAAA......................................	22	1	36.00	0.00	0.00	6.00	5.00	25.00
..............................TTTAGAATTCCTACGCTTTACCGT............................................................................	24	1	21.00	1.00	0.00	2.00	18.00	0.00
.......................................................................CAAAGCGTTTGGATTCTG.........................................	18	1	15.00	0.00	0.00	4.00	11.00	0.00
..............................TTTAGAATTCCTACGCTTTGCC..............................................................................	22	1	14.00	0.00	0.00	6.00	5.00	3.00
.......................................................................CAAAGCGTTTGGATTCTTAAAC.....................................	22	1	12.00	0.00	0.00	1.00	3.00	8.00
..............................TTTAGAATTCCTACGCTTTA................................................................................	20	1	12.00	0.00	1.00	3.00	8.00	0.00
.......................................................................CAAAGCGGTTGGATTCTGAAAC.....................................	22	1	10.00	0.00	0.00	1.00	9.00	0.00
..............................TTTAGAATTCCTACGCTTT.................................................................................	19	1	10.00	0.00	0.00	5.00	4.00	1.00
.......................................................................CAAAGCGCTTGGATTCTGAAAC.....................................	22	1	9.00	0.00	0.00	3.00	6.00	0.00
........................................................................AAAGCGTTTGGATTCTGAAAC.....................................	21	1	9.00	0.00	0.00	4.00	5.00	0.00
.......................................................................CAAGGCGTTTGGATTCTGAAAC.....................................	22	1	8.00	0.00	0.00	1.00	4.00	3.00
.......................................................................AAAAGCGTTTGGATTCTGAAAC.....................................	22	1	8.00	0.00	0.00	1.00	7.00	0.00
......................................................................GCAAAGCGTTTGGATTCTGAA.......................................	21	1	7.00	1.00	0.00	1.00	1.00	4.00
.......................................................................CAAAGAGTTTGGATTCTGAAAC.....................................	22	1	7.00	0.00	1.00	6.00	0.00	0.00
.......................................................................CAAAGCGTTTGGGTTCTGAAAC.....................................	22	1	7.00	0.00	0.00	0.00	5.00	2.00
.......................................................................CAAAGCGTTTGGTTTCTGAAAC.....................................	22	1	7.00	0.00	0.00	0.00	6.00	1.00
.......................................................................CAAAGCGTTTGGCTTCTGAAAC.....................................	22	1	7.00	0.00	0.00	0.00	6.00	1.00
.......................................................................CAAAGCGTTTGGATTCTCAAAC.....................................	22	1	6.00	0.00	0.00	1.00	1.00	4.00
..............................TTTAGAATTCCTAAGCTTTACC..............................................................................	22	1	6.00	0.00	1.00	1.00	4.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAAA.....................................	22	1	6.00	0.00	0.00	1.00	1.00	4.00
..............................TTTAGAATTCCTGCGCTTTACC..............................................................................	22	1	5.00	0.00	0.00	1.00	1.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGACAC.....................................	22	1	5.00	0.00	0.00	2.00	3.00	0.00
.......................................................................CAAAGCGTTTGTATTCTGAAAC.....................................	22	1	5.00	0.00	0.00	1.00	4.00	0.00
.......................................................................TAAAGCGTTTGGATTCTGAAAC.....................................	22	1	5.00	0.00	0.00	1.00	4.00	0.00
.......................................................................CAAAGCGTTTGGATTCTAAAAC.....................................	22	1	5.00	0.00	0.00	1.00	1.00	3.00
..............................TTTAGAATTCGTACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	1.00	2.00	1.00
..............................TTTGGAATTCCTACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
..............................TTTAGAATTCCGACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
........................................................................AAAGCGTTTGGATTCTGAAA......................................	20	1	4.00	0.00	0.00	0.00	4.00	0.00
..............................TTTAGAATTCTTACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	2.00	2.00	0.00
..............................TTTAGAAGTCCTACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
.......................................................................CAAAGCGGTTGGATTCTGAAA......................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
..............................TTGAGAATTCCTACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
.......................................................................GAAAGCGTTTGGATTCTGAAAC.....................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
..............................TTTAGAATTCCTACGCTTTACCA.............................................................................	23	1	4.00	0.00	0.00	1.00	3.00	0.00
..............................ATTAGAATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
..............................TGTAGAATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
..............................TTTAGAATTCATACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
...............................TTAGAATTCCTACGCTTTACC..............................................................................	21	1	3.00	0.00	0.00	1.00	2.00	0.00
..............................TTTAGAATGCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.............................CTTTAGAATTCCTACGCTTTACC..............................................................................	23	1	3.00	0.00	1.00	0.00	2.00	0.00
..............................TTTAGAATTCCTACGCTT..................................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATCCTGAAAC.....................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
..............................TTTAGAGTTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
..............................TTTAGAATTCCTCCGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	2.00	1.00
..............................TTTAGAATTCCTACGCTTTACCT.............................................................................	23	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................................CAAAGCTTTTGGATTCTGAAAC.....................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
..............................TTTAGAATTCCTACGCTTTACT..............................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................................CAAAGCGGTTGGTTTCTGAAAC.....................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
..............................TTTATAATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
..............................TTTAGAATTCCTACGCTTTAA...............................................................................	21	1	3.00	0.00	1.00	1.00	0.00	1.00
.......................................................................CAAAGCGTTGGGATTCTGAAAC.....................................	22	1	3.00	0.00	0.00	1.00	1.00	1.00
.......................................................................CAAAGCGTTTGGATTCTGAAACG....................................	23	1	3.00	0.00	0.00	0.00	2.00	1.00
.......................................................................CAACGCGTTTGGATTCTGAAAC.....................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
..............................TTTAGAATTCCTACGCCTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGAAC.....................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAACC.....................................	22	1	3.00	0.00	0.00	0.00	2.00	1.00
..............................TTTAGAATTTCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
..............................TTTAGAATTCCTACCCTTTACC..............................................................................	22	1	3.00	0.00	0.00	1.00	1.00	1.00
.......................................................................CAAAACGTTTGGATTCTGAAAC.....................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................CAAAGCGTTTGGTTTCTGATAC.....................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00

droWil1

C--AATCTGACATTG--------GTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTA---------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	60690.00	21.00	739.00	7119.00	52811.00
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	7168.00	56.00	371.00	848.00	5893.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	6113.00	1.00	24.00	644.00	5444.00
.......................................................................CAAAGCGTTTGGATTCTGAAA......................................	21	1	3364.00	13.00	30.00	112.00	3209.00
..............................TTTAGAATTCCTACGCTTTACCG.............................................................................	23	1	3173.00	3.00	119.00	1032.00	2019.00
......................................................................GCAAAGCGTTTGGATTCTGAAA......................................	22	1	698.00	0.00	3.00	20.00	675.00
.......................................................................CAAAGCGTTTGGATTCTGAAACT....................................	23	1	570.00	2.00	5.00	45.00	518.00
......................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................	23	1	561.00	2.00	50.00	68.00	441.00
.......................................................................CAAAGCGTTTGGATTCTGAA.......................................	20	1	332.00	4.00	7.00	42.00	279.00
..............................TTTAGAATTCCTACGCTTTACCT.............................................................................	23	1	311.00	0.00	1.00	6.00	304.00
..............................TTTAGAATTCCTACGCTTTGCC..............................................................................	22	1	299.00	0.00	0.00	39.00	260.00
.......................................................................CAAAGCGTTTGGATTCTGAAACC....................................	23	1	224.00	0.00	4.00	29.00	191.00
..............................TTTAGAATTCCTGCGCTTTACC..............................................................................	22	1	192.00	0.00	1.00	7.00	184.00
.......................................................................CAAAGCGTTTGGATTCTGAAACA....................................	23	1	171.00	6.00	20.00	69.00	76.00
.............................TTTTAGAATTCCTACGCTTTACC..............................................................................	23	1	111.00	0.00	0.00	6.00	105.00
.......................................................................CAAAGCGTTTGGATTCTGA........................................	19	1	91.00	2.00	3.00	18.00	68.00
..............................TTTAGAATTCCTACGCTTTA................................................................................	20	1	90.00	0.00	3.00	27.00	60.00
.............................TTTTAGAATTCCTACGCTTTAC...............................................................................	22	1	88.00	0.00	4.00	3.00	81.00
......................................................................GCAAAGCGTTTGGATTCTGAA.......................................	21	1	80.00	0.00	1.00	2.00	77.00
.........................................................................AAGCGTTTGGATTCTGAAAC.....................................	20	1	79.00	2.00	0.00	2.00	75.00
..............................TTTAGAATTCCTACGCTTTACCGT............................................................................	24	1	75.00	0.00	3.00	67.00	5.00
..............................CTTAGAATTCCTACGCTTTACC..............................................................................	22	1	74.00	0.00	2.00	43.00	29.00
..............................TTTAGAATTTCTACGCTTTACC..............................................................................	22	1	69.00	0.00	1.00	5.00	63.00
..............................TTTAGAATTCCTACGCTTTAAC..............................................................................	22	1	61.00	0.00	0.00	29.00	32.00
..............................TTTAGAATTCTTACGCTTTACC..............................................................................	22	1	61.00	0.00	3.00	5.00	53.00
..............................TTTAGAATTCCTACTCTTTACC..............................................................................	22	1	56.00	0.00	1.00	8.00	47.00
..............................TTTAGAATTCCCACGCTTTACC..............................................................................	22	1	55.00	0.00	0.00	14.00	41.00
..............................TTTAGAATTCCTACGCCTTACC..............................................................................	22	1	53.00	0.00	2.00	10.00	41.00
...............................TTAGAATTCCTACGCTTTACC..............................................................................	21	1	52.00	0.00	2.00	15.00	35.00
..............................TTTAGAATTCCTACGCTTACC...............................................................................	21	1	49.00	0.00	0.00	18.00	31.00
..............................TTTAGAATTCCTCCGCTTTACC..............................................................................	22	1	49.00	0.00	1.00	5.00	43.00
..............................TTTAGAATTCCTACGCTTT.................................................................................	19	1	47.00	0.00	0.00	2.00	45.00
........................................................................AAAGCGTTTGGATTCTGAAAC.....................................	21	1	44.00	0.00	6.00	10.00	28.00
..............................TTTAGAATTCCTACGCTTTACA..............................................................................	22	1	40.00	0.00	0.00	24.00	16.00
..............................TTTAGAATTCCTACACTTTACC..............................................................................	22	1	38.00	0.00	2.00	11.00	25.00
..............................TTTAGAATTCATACGCTTTACC..............................................................................	22	1	37.00	0.00	4.00	24.00	9.00
..............................TTTAGAATTACTACGCTTTACC..............................................................................	22	1	37.00	0.00	1.00	22.00	14.00
.......................................................................CAAAGCGTTTGGATTCTGAAAA.....................................	22	1	36.00	0.00	1.00	7.00	28.00
..............................TTTAGAATTCCTACGCTTTACCA.............................................................................	23	1	33.00	1.00	0.00	2.00	30.00
..............................TTTAGAATTCCTACGATTTACC..............................................................................	22	1	32.00	0.00	1.00	25.00	6.00
..............................TTTAGAGTTCCTACGCTTTACC..............................................................................	22	1	32.00	0.00	0.00	13.00	19.00
..............................TTTAGAATCCCTACGCTTTACC..............................................................................	22	1	30.00	0.00	0.00	9.00	21.00
..............................TTTAGAATTCCTACGCTT..................................................................................	18	1	29.00	0.00	1.00	0.00	28.00
..............................TTTAAAATTCCTACGCTTTACC..............................................................................	22	1	28.00	0.00	0.00	10.00	18.00
..............................TTTAGAATTCCTACGCTTTGC...............................................................................	21	1	28.00	0.00	0.00	2.00	26.00
..............................TTTAGAATTCCTACGCTTTACT..............................................................................	22	1	27.00	0.00	0.00	11.00	16.00
.......................................................................CAAAGCGTTTGGATTCTTAAAC.....................................	22	1	26.00	0.00	1.00	1.00	24.00
..............................TTTAGAATTxCTACGCTTTACC..............................................................................	21	1	26.00	0.00	0.00	4.00	22.00
.......................................................................CAAAGCTTTTGGATTCTGAAAC.....................................	22	1	25.00	0.00	1.00	3.00	21.00
....................................................GTCGCC-TACGAAACTCGG...........................................................	18	1	25.00	0.00	12.00	4.00	9.00
..............................TTTAGAATTCCTAAGCTTTACC..............................................................................	22	1	25.00	0.00	0.00	18.00	7.00
..............................TTTGGAATTCCTACGCTTTACC..............................................................................	22	1	24.00	0.00	0.00	12.00	12.00
..............................TTTAGAATTCCTACCCTTTACC..............................................................................	22	1	24.00	0.00	0.00	12.00	12.00
..............................TTTAGAATTCCTATGCTTTACC..............................................................................	22	1	24.00	0.00	1.00	11.00	12.00
..............................TTTAGAATTCCTACGCTTCACC..............................................................................	22	1	21.00	0.00	0.00	10.00	11.00
..............................TTTAGAATTCCTACGCTTTACCC.............................................................................	23	1	21.00	0.00	0.00	1.00	20.00
..............................GTTAGAATTCCTACGCTTTACC..............................................................................	22	1	21.00	0.00	0.00	16.00	5.00
......................................................................GCAAAGCTTTTGGATTCTGAAAC.....................................	23	1	21.00	0.00	0.00	1.00	20.00
.......................................................................CAAAGCGTTTGGGTTCTGAAAC.....................................	22	1	20.00	0.00	1.00	0.00	19.00
..............................TTTAGAATTCCTTCGCTTTACC..............................................................................	22	1	20.00	0.00	1.00	5.00	14.00
..............................TTTAGAACTCCTACGCTTTACC..............................................................................	22	1	20.00	0.00	0.00	9.00	11.00
..............................TTTAGAATTCCTACGCTTTATC..............................................................................	22	1	20.00	0.00	0.00	6.00	14.00
.......................................................................CAAAGCTTTTGGATTCTGAAA......................................	21	1	20.00	0.00	0.00	2.00	18.00
..............................TTTAGAATTCCTGCGCTTTAC...............................................................................	21	1	19.00	0.00	0.00	0.00	19.00
.......................................................................CAAAGCGTTTGGATTCTAAAAC.....................................	22	1	19.00	0.00	2.00	1.00	16.00
.......................................................................CAAGGCGTTTGGATTCTGAAAC.....................................	22	1	18.00	0.00	0.00	0.00	18.00
.......................................................................CAAAGCGTTTGGATTCTGAAACG....................................	23	1	18.00	0.00	1.00	8.00	9.00
..............................TTTAGAATTCCTACGTTTTACC..............................................................................	22	1	17.00	0.00	0.00	7.00	10.00
..............................ATTAGAATTCCTACGCTTTACC..............................................................................	22	1	17.00	0.00	0.00	15.00	2.00
..............................TTTAGAATTCCTACxCTTTACC..............................................................................	21	1	16.00	0.00	0.00	0.00	16.00
..............................TTCAGAATTCCTACGCTTTACC..............................................................................	22	1	16.00	0.00	0.00	6.00	10.00
..............................TTTAGAATTCCTACTCTTTAC...............................................................................	21	1	15.00	0.00	0.00	1.00	14.00
.............................CTTTAGAATTCCTACGCTTTACC..............................................................................	23	1	15.00	0.00	0.00	11.00	4.00
..............................TTTAGGATTCCTACGCTTTACC..............................................................................	22	1	15.00	0.00	2.00	7.00	6.00
..........................................................................AGCGTTTGGATTCTGAAAC.....................................	19	1	13.00	0.00	0.00	3.00	10.00
.......................................................................CAAAGCGTTTGTATTCTGAAAC.....................................	22	1	13.00	1.00	2.00	1.00	9.00
..............................TTTAGAATTGCTACGCTTTACC..............................................................................	22	1	13.00	0.00	0.00	4.00	9.00
..............................TTTAGAATTCCTACGCTCTACC..............................................................................	22	1	13.00	0.00	0.00	7.00	6.00
..............................TTTAGAATTCCTAxxCTTTACC..............................................................................	20	1	12.00	0.00	0.00	0.00	12.00
.......................................................................CAAAGCGTTTTGATTCTGAAAC.....................................	22	1	12.00	0.00	0.00	0.00	12.00
.......................................................................CAAAGCGTTTGGATTCTGAT.......................................	20	1	12.00	0.00	0.00	0.00	12.00
..............................TCTAGAATTCCTACGCTTTACC..............................................................................	22	1	12.00	0.00	0.00	6.00	6.00
.......................................................................CAGAGCGTTTGGATTCTGAAAC.....................................	22	1	12.00	0.00	0.00	0.00	12.00
..............................TTTAGAATTCCAACGCTTTACC..............................................................................	22	1	12.00	0.00	0.00	10.00	2.00
.......................................................................CAAAGCGTTTGGATTCTAAAC......................................	21	1	11.00	0.00	0.00	0.00	11.00
..............................TTTAGAATTCCTGCGCTTTACCG.............................................................................	23	1	11.00	0.00	0.00	0.00	11.00
.......................................................................CAAAGCGTTTGGATTCTG.........................................	18	1	11.00	0.00	1.00	2.00	8.00
..............................TTTAGAATTCCTACGCTTTAA...............................................................................	21	1	11.00	0.00	0.00	4.00	7.00
.......................................................................CAAAGCGTTTGGATTCTCAAAC.....................................	22	1	11.00	0.00	1.00	0.00	10.00
......................................................................TCAAAGCGTTTGGATTCTGAAAC.....................................	23	1	10.00	0.00	1.00	1.00	8.00
.......................................................................CAAAGCGTTTGGATTCTGG........................................	19	1	10.00	0.00	0.00	0.00	10.00
..............................TTTACAATTCCTACGCTTTACC..............................................................................	22	1	9.00	0.00	0.00	5.00	4.00
..............................TTTAGAATTCCTACGCxTTACCG.............................................................................	22	1	9.00	0.00	0.00	8.00	1.00
.............................TTTTAGAATTCCTACGCTTT.................................................................................	20	1	9.00	0.00	0.00	2.00	7.00
..............................TTTAGACTTCCTACGCTTTACC..............................................................................	22	1	9.00	0.00	0.00	1.00	8.00
.......................................................................CAAAGAGTTTGGATTCTGAAAC.....................................	22	1	9.00	1.00	0.00	6.00	2.00
..............................TTTAGAATTCCTACGCTTTTCC..............................................................................	22	1	8.00	0.00	0.00	4.00	4.00
.......................................................................TAAAGCGTTTGGATTCTGAAAC.....................................	22	1	8.00	0.00	0.00	4.00	4.00
..............................TTTATAATTCCTACGCTTTACC..............................................................................	22	1	8.00	0.00	0.00	3.00	5.00
..............................CTTAGAATTCCTACGCTTTAC...............................................................................	21	1	8.00	0.00	0.00	5.00	3.00
.......................................................................CAAGGCGTTTGGATTCTGAAA......................................	21	1	8.00	0.00	0.00	0.00	8.00

droVir3

AATAA----------TGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATG---------------------GTCG---G	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	4710.00	4.00	287.00	11.00	73.00	4335.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	562.00	1.00	91.00	1.00	5.00	464.00
.......................................................................CAAAGCGTTTGGATTCTGAAA......................................	21	1	509.00	3.00	18.00	0.00	18.00	470.00
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	468.00	5.00	26.00	6.00	8.00	423.00
.......................................................................CAAAGCGTTTGGATTCTGAAACT....................................	23	1	61.00	0.00	2.00	0.00	0.00	59.00
.......................................................................CAAAGCGTTTGGATTCTGAA.......................................	20	1	58.00	0.00	8.00	0.00	1.00	49.00
..............................TTTAGAATTCCTACGCTTT.................................................................................	19	1	34.00	0.00	2.00	0.00	1.00	31.00
..............................TTTAGAATTCCTACGCTTTA................................................................................	20	1	28.00	1.00	9.00	0.00	0.00	18.00
..............................TTTAGAATTCCTACGCTTTACCT.............................................................................	23	1	26.00	0.00	0.00	0.00	0.00	26.00
.......................................................................CAAAGCGTTTGGATTCTGA........................................	19	1	21.00	1.00	2.00	0.00	0.00	18.00
..............................TTTAGAATTCCTACGCTTTACCG.............................................................................	23	1	15.00	0.00	3.00	0.00	3.00	9.00
.......................................................................CAAAGCGTTTGGATTCTGAAACC....................................	23	1	15.00	0.00	1.00	0.00	0.00	14.00
.......................................................................CAAAGCGTTTGGATTCTT.........................................	18	1	14.00	0.00	0.00	0.00	0.00	14.00
.......................................................................CAAAGCGTTTGGATTCTGAAACA....................................	23	1	12.00	1.00	2.00	0.00	1.00	8.00
..............................TTTAGAATTCCTACGCTT..................................................................................	18	1	11.00	0.00	0.00	0.00	0.00	11.00
..............................TTTAGAATTCCTACGCTTTAAC..............................................................................	22	1	9.00	0.00	0.00	0.00	0.00	9.00
..............................TTTAGAATTCCTACTCTTTACC..............................................................................	22	1	9.00	0.00	5.00	0.00	0.00	4.00
..............................TTTAGAATTTCTACGCTTTACC..............................................................................	22	1	9.00	0.00	2.00	0.00	0.00	7.00
..............................TTTAGAATTCCTACGCTTTCCC..............................................................................	22	1	7.00	0.00	1.00	1.00	0.00	5.00
......................................................................GCAAAGCGTTTGGATTCTGAA.......................................	21	1	7.00	0.00	0.00	1.00	1.00	5.00
..............................TTTAGAATTCCTACGCTTTGCC..............................................................................	22	1	7.00	0.00	1.00	0.00	0.00	6.00
.......................................................................CAAAGCGTTTGGATTCTTAAAC.....................................	22	1	6.00	0.00	1.00	1.00	0.00	4.00
.......................................................................CAAAGCGTTTGGATTCTGAAAA.....................................	22	1	6.00	1.00	0.00	0.00	1.00	4.00
..............................TTTAGAATTCCTACGCCTTACC..............................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
..............................TTTAGAATTCCCACGCTTTACC..............................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
..............................TTTAGAATTCCTACGCTTTACA..............................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
..............................TTTAGACTTCCTACGCTTTACC..............................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
..............................TTTAGAATTCCTACxCTTTACC..............................................................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
........................................................................AAAGCGTTTGGATTCTGAAAC.....................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
..............................TTTAGAATTCCTACGCTTTACCC.............................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGG........................................	19	1	3.00	0.00	0.00	0.00	1.00	2.00
..............................TTGAGAATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
..............................TTTAGAATTCCTACGCTTTACCA.............................................................................	23	1	3.00	0.00	2.00	0.00	0.00	1.00
..............................TTTAGAATTCCTACACTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
.........................................................................AAGCGTTTGGATTCTGAAAC.....................................	20	1	3.00	0.00	0.00	0.00	0.00	3.00
..............................TTTAGAATTCCTACTCTTTAC...............................................................................	21	1	3.00	0.00	1.00	0.00	0.00	2.00
.............................CTTTAGAATTCCTACGCTTTACC..............................................................................	23	1	3.00	0.00	1.00	1.00	0.00	1.00
..............................CTTAGAATTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	1.00	0.00	0.00	2.00
..............................TTTAGAGTTCCTACGCTTTACC..............................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00

droMoj3

---------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATATCGATTTATCACG-------ATGT--TCG---A	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	719.00	56.00	392.00	219.00	52.00
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	209.00	48.00	105.00	48.00	8.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	77.00	5.00	41.00	28.00	3.00
.......................................................................CAAAGCGTTTGGATTCTGAAA......................................	21	1	60.00	6.00	40.00	12.00	2.00
..............................TTTAGAATTCCTACGCTTTA................................................................................	20	1	18.00	1.00	12.00	5.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAACA....................................	23	1	14.00	7.00	6.00	1.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGA........................................	19	1	10.00	5.00	3.00	2.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAAACT....................................	23	1	9.00	0.00	6.00	3.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGAA.......................................	20	1	8.00	5.00	2.00	1.00	0.00
.......................................................................CAAAGCGTTTGGATTCTGGAAC.....................................	22	1	8.00	0.00	0.00	8.00	0.00
..............................TTTAGAATTCCTACGCTTTGCC..............................................................................	22	1	7.00	1.00	4.00	1.00	1.00
..............................TTTAGAATTCCTACGCTTT.................................................................................	19	1	5.00	0.00	4.00	1.00	0.00
..............................TTTAGAATTCCTACGCTTTCCC..............................................................................	22	1	4.00	0.00	1.00	3.00	0.00
..............................TTTAGAATTCCTACGCCTTACC..............................................................................	22	1	3.00	0.00	0.00	2.00	1.00
......................................................................GCAAAGCGTTTGGATTCTGAAA......................................	22	1	3.00	1.00	2.00	0.00	0.00
..............................TTTAGAATTCCTAAGCTTTACC..............................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..............................TTTAGAATTCCTACTCTTTACC..............................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..............................TTTAGAATTCCTACGCTTTATC..............................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..............................TTTAGAATTCCTACGCTTTACA..............................................................................	22	1	3.00	0.00	3.00	0.00	0.00

droGri2

C-------------GTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTG---------------------GTCA---G	Size	Hit Count	Total Norm	V109 Male body
.......................................................................CAAAGCGTTTGGATTCTGAAAC.....................................	22	1	11.00	11.00
..............................TTTAGAATTCCTACGCTTTACC..............................................................................	22	1	4.00	4.00
.......................................................................CAAAGTGTTTGGATTCTGAAAC.....................................	22	1	1.00	1.00
.......................................................................CAAAGCGTTTGGATTCTGAAAG.....................................	22	1	1.00	1.00
.......................................................................CTAAGCGTTTGGATTCTGAAACA....................................	23	1	1.00	1.00
..............................TTTAGAATTCCTACGCTTTAC...............................................................................	21	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image