dme-mir-6-3- Best orthologs

dme-mir-6-3	chr2R:15548221-15548300 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 15548227-15548248
   star strand at position 15548270-15548292
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2R:15548206-15548315 -		1	AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droSim1	chr2R:14253641-14253750 -	LASTZ	1	AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droSec1	super_1:13062939-13063048 -	LASTZ	1	AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droYak2	chr2R:13624474-13624583 +	LASTZ	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CTCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACAT
droEre2	scaffold_4845:9748460-9748569 -	LASTZ	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGT
droEug1	scf7180000409474:2397534-2397643 +	LASTZ	4	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droBia1	scf7180000302143:3059125-3059234 -	LASTZ	4	AAA-----TTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACTCT----CACAGTTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT
droTak1	scf7180000415384:84743-84852 +	LASTZ	4	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droEle1	scf7180000491201:2013284-2013393 -	LASTZ	4	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droRho1	scf7180000780066:74356-74465 +	LASTZ	4	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGT
droFic1	scf7180000454039:847346-847455 -	LASTZ	4	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGT
droKik1	scf7180000302679:88651-88761 -	LASTZ	4	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATTCA----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droAna3	scaffold_13266:9732107-9732212 +	LASTZ	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATTCG----CATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT
droBip1	scf7180000396427:875054-875159 +	LASTZ	4	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATTCG----CCTCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
dp4	chr3:12676789-12676898 -	LASTZ	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTTG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGA
droPer1	super_2:8906774-8906883 +	LASTZ	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTCG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGA
droWil1	scaffold_180701:1650985-1651090 -	LASTZ	1	CAT-----TT----TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAA--TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC--
droVir3	scaffold_12875:4112942-4113050 +	LASTZ	1	CGC-----TCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTTTG----TACTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAACTT
droMoj3	scaffold_6496:20935943-20936057 -	LASTZ	1	AATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCATT----TAATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGT
droGri2	scaffold_15112:2107905-2108014 -	LASTZ	1	A-C-----TCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATGATTCA----AATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTT

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droSim1	AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droSec1	AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droYak2	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CTCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACAT
droEre2	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGT
droEug1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droBia1	AAA-----TTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACTCT----CACAGTTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT
droTak1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droEle1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droRho1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGT
droFic1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGT
droKik1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATTCA----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droAna3	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATTCG----CATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT
droBip1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATTCG----CCTCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
dp4	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTTG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGA
droPer1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTCG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGA
droWil1	CAT-----TT----TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAA--TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC--
droVir3	CGC-----TCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTTTG----TACTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAACTT
droMoj3	AATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCATT----TAATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGT
droGri2	A-C-----TCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATGATTCA----AATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTT

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.............................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	2237.00	2.33	3.67	2.33	2228.67
.............................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	1354.33	1.00	3.67	3.00	1346.67
.............................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	959.00	1.00	1.00	0.67	956.33
.............................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	890.33	1.67	1.67	3.67	883.33
.............................................................................TATCACAGTGGCTGGTTTTTTTT....................	23	1	1321.00	1.00	1.00	1.00	1318.00
.............................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	329.67	0.00	0.00	1.33	328.33
.............................................................................TATCACAGTGGCTGGTCTTTTTTT...................	24	2	241.00	0.00	0.50	0.00	240.50
.............................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	131.33	3.00	0.00	0.33	128.00
.............................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	114.33	0.33	2.00	0.67	111.33
.............................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	3	44.00	0.00	0.00	0.00	44.00
.............................................................................TATCACAGTGGCTGGTTTTT.......................	20	3	31.00	1.00	0.33	0.00	29.67
............................AGGGAACGGTTGCTGATGATGTA.....................................................................	23	1	93.00	76.00	0.00	0.00	17.00
.............................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	27.67	0.33	0.33	0.00	27.00
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	27.33	1.00	0.00	0.00	26.33
.............................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	26.67	1.00	0.33	0.00	25.33
.............................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	1	78.00	3.00	0.00	0.00	75.00
.............................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	25.33	0.00	0.00	0.00	25.33
.............................................................................TATCACAGTGGCTTTTCTTTTTG....................	23	3	18.00	0.00	0.00	0.00	18.00
.............................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	16.33	1.00	0.00	0.00	15.33
.............................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	13.00	3.00	0.00	0.00	10.00
.............................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	3	12.33	0.00	0.00	0.00	12.33
.............................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	11.00	0.00	0.00	0.00	11.00
.............................................................................TATCACATTGGCTGGTCTTTTT.....................	22	3	10.67	0.00	0.00	0.00	10.67
.............................................................................TATCACAGTGGCTGGTCTTTTTTG...................	24	2	10.00	0.00	0.00	0.00	10.00
.............................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	6.67	4.33	0.00	0.00	2.33
.............................................................................TATCACAGTGGCTGTTTTTTT......................	21	4	4.75	0.00	0.00	0.00	4.75
.............................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	6.33	4.00	0.00	0.00	2.33
.............................................................................TATCACAGTGGCTGGTCTT........................	19	3	5.67	0.67	0.00	0.00	5.00
..............................................................................ATCACAGTGGCTGGTCTTTTT.....................	21	3	5.33	0.00	0.00	0.00	5.33
............................AGGGAACGGTTGCTGATGATG.......................................................................	21	1	16.00	13.00	0.00	0.00	3.00
.............................................................................TATCACAGTGGCTGTTTTTTTTT....................	23	3	5.33	0.00	0.00	0.00	5.33
.............................................................................TATCACAGTGGCTGGTATTTTTT....................	23	1	14.00	2.00	0.00	0.00	12.00
.............................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	3.25	0.00	0.00	0.00	3.25
.............................................................................TATCACAGTGGCTGGGCTTTTTT....................	23	1	13.00	3.00	0.00	0.00	10.00
.............................................................................TATCACAGTGGCTGGTCTTTTTTTT..................	25	1	13.00	0.00	0.00	0.00	13.00
.............................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	4.33	0.00	0.00	0.00	4.33
............................AGGGAACGGTTGCTGATGATGT......................................................................	22	1	13.00	12.00	0.00	0.00	1.00
.............................................................................TATCACAGCGGCTGGTCTTTTT.....................	22	3	4.00	0.00	0.00	0.00	4.00
.............................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	3.67	0.00	0.00	0.00	3.67
.............................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	3.67	2.00	0.00	0.00	1.67
.............................................................................TATCACAGTGGCCGTTCTTTTTG....................	23	3	3.33	0.00	0.00	0.00	3.33
.............................................................................TATCACAGTGACTGTTCTTTTTG....................	23	3	3.00	0.00	0.00	0.00	3.00
.............................................................................TATCACAGTGGCTGGTCT.........................	18	3	2.67	0.00	0.00	0.00	2.67
.............................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	2.67	0.67	0.00	0.00	2.00
.............................................................................TATCGCAGTGGCTGGTCTTTTT.....................	22	3	2.67	0.00	0.33	0.00	2.33
.............................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	3	2.67	2.00	0.00	0.00	0.67
.............................................................................TATCACAGTGGCTGTTTTTT.......................	20	4	2.00	0.00	0.00	0.00	2.00
.............................................................................TATCACAGTGGCTxTTCTTTT......................	20	3	2.67	0.00	0.33	0.00	2.33
.............................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	2.67	0.00	0.00	0.00	2.67
.............................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	3	2.33	0.00	0.00	0.00	2.33
.............................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	3	2.33	0.00	0.00	0.00	2.33
.............................................................................TATCACAGTGGCTGGGCTTTT......................	21	3	2.33	0.33	0.00	0.00	2.00
.............................................................................TATCACATTGGCTGTTCTTTT......................	21	3	2.33	0.00	0.00	0.00	2.33
.............................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	2.33	1.33	0.00	0.00	1.00
..............................................................................ATCACAGTGGCTGGTCTTTTTT....................	22	3	2.00	0.00	0.00	0.00	2.00
.............................................................................TATCACAGTGACTGTTCTTTT......................	21	3	2.00	0.67	0.00	0.00	1.33
.............................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	2.00	1.67	0.00	0.00	0.33
.............................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	3	2.00	0.33	0.00	0.00	1.67
.............................................................................TATCACAGTGGCTGGTATTTT......................	21	3	2.00	0.00	0.00	0.00	2.00
.............................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	2.00	0.00	0.00	0.00	2.00
..............................................................................ATCACAGTGGCTGGTCTTTT......................	20	3	2.00	0.00	0.00	0.00	2.00
.............................................................................TATCACAGTGGCTCTTCTTTTTG....................	23	3	2.00	0.00	0.00	0.00	2.00
.............................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	1.25	0.25	0.00	0.00	1.00
.............................................................................TATCACAGTGGCTGGTCTTTTTTA...................	24	1	5.00	0.00	0.00	0.00	5.00
.............................................................................TACCACAGTGGCTGGTCTTTTT.....................	22	3	1.67	0.00	0.00	0.00	1.67
...............................................................................TCACAGTGGCTGGTCTTTTT.....................	20	3	1.67	0.00	0.00	0.00	1.67
.............................................................................TATCACATTGGCTGTTCTTTTTT....................	23	3	1.67	0.00	0.00	0.00	1.67
.............................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	1.67	1.33	0.00	0.00	0.33
.............................................................................TATCACACTGGCTGGTCTTTTT.....................	22	3	1.67	0.00	0.00	0.00	1.67
.............................................................................TATCACAGTGGCCGTTCTTTT......................	21	3	1.67	0.00	0.00	0.00	1.67
.............................................................................TATCACAGTGGCTGTTCTTTTTTT...................	24	3	1.67	0.00	0.00	0.00	1.67
.............................................................................TATCACGGTGGCTGTTCTTTTTT....................	23	3	1.33	1.00	0.00	0.00	0.33
.............................................................................TATCACAGTGGCTGGTGTT........................	19	3	1.33	1.00	0.00	0.00	0.33
.............................................................................TATCACAGTGGCTGTTGTTTTTTT...................	24	2	2.00	2.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTTC...................	24	1	4.00	0.00	0.00	0.00	4.00
.............................................................................TATCGCAGTGGCTGGTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
.............................................................................TATCACAGTGGCTGGTCTTTTTA....................	23	3	1.33	0.00	0.00	0.00	1.33
..............................................................................ATCACAGTGGCTGGTTTTTTT.....................	21	3	1.33	0.00	0.00	0.00	1.33
.............................................................................TATCACACTGGCTGTTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
.............................................................................TATCACGGTGGCTGTTCTTTTTG....................	23	3	1.33	0.00	0.00	0.00	1.33
.............................................................................TATCACAGTGGCTGTTGTTTTTT....................	23	3	1.00	0.00	0.00	0.00	1.00
.............................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
.............................................................................TATCACATTGGCTGGTCTTTT......................	21	3	1.00	0.00	0.00	0.00	1.00
.............................................................................TATCACAGTGGTTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
.............................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
.............................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
.............................................................................TATCACAGTGGCTGGTTTT........................	19	3	1.00	0.33	0.00	0.00	0.67
.............................................................................TATCACAGCGGCTGGTCTTTTTT....................	23	1	3.00	0.00	0.00	0.00	3.00
.............................................................................TATCACAGTGGCTGGCCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
.............................................................................TACCACAGTGGCTGGTCTTTT......................	21	3	1.00	0.00	0.00	0.00	1.00
.................................................................................ACAGTGGCTGGTCTTTTT.....................	18	3	1.00	0.00	0.00	0.00	1.00
.............................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	3	1.00	0.00	0.00	0.00	1.00
............................AGGGAACGGTTGCTGATGAT........................................................................	20	1	3.00	1.00	0.00	0.00	2.00
.............................................................................TATCACAGTGTCTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
.............................................................................TATCACAxTGGCTGTTCTTTTTG....................	22	3	1.00	0.00	0.00	0.00	1.00
.............................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	1.00	1.00	0.00	0.00	0.00

droSec1

AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	4	19927.00	3.50	19730.50	193.00
.............................................................................TATCACAGTGGCTGTTCTTTT......................	21	4	5992.25	2.50	5955.25	34.50
.............................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	4	1764.50	0.25	1744.75	19.50
.............................................................................TATCACAGTGGCTGTTCTTT.......................	20	4	1057.00	0.75	1047.50	8.75
.............................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	4	280.75	0.00	280.00	0.75
.............................................................................TATCACAGTGGCTGTTCTT........................	19	4	194.00	0.00	189.25	4.75
.............................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	4	124.00	0.25	123.50	0.25
.............................................................................TATCACAGTGGCTGTTCTTTTTA....................	23	4	94.25	0.00	92.00	2.25
.................................................................................ACAGTGGCTGTTCTTTTT.....................	18	4	84.00	0.00	83.50	0.50
.............................................................................TATCACAGTGGCTGTTCCTTTT.....................	22	5	62.20	0.00	61.40	0.80
...............................................................................TATCAGTGGCTGTTCTTTTT.....................	20	4	75.75	0.00	75.50	0.25
............................AGGGAACGGTTGCTGATGATGTA.....................................................................	23	1	248.00	2.00	242.00	4.00
.............................................................................TATCACAGTGGCTGTTCTCTTT.....................	22	4	60.00	0.25	59.00	0.75
.............................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	5	45.60	0.00	44.40	1.20
.............................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	4	53.75	0.00	53.25	0.50
.............................................................................TATTACAGTGGCTGTTCTTTTT.....................	22	4	52.00	0.00	52.00	0.00
.............................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	4	50.25	0.00	49.50	0.75
.............................................................................TATCACAGTGGCTGTTCT.........................	18	4	50.25	0.00	49.00	1.25
.............................................................................TATCACAGTGGCTGGTCTTTT......................	21	4	44.25	0.00	43.50	0.75
.............................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	4	37.25	0.00	37.25	0.00
.............................................................................TATCGCAGTGGCTGTTCTTTTT.....................	22	4	36.25	0.00	35.75	0.50
..............................................................................ATCACAGTGGCTGTTCTTTTT.....................	21	4	32.25	0.00	32.00	0.25
.............................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	4	31.50	0.00	31.25	0.25
.............................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	4	30.75	0.00	30.00	0.75
.............................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	4	30.50	0.00	30.00	0.50
.............................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	4	27.50	0.00	27.50	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTTGA...................	24	4	27.00	0.00	27.00	0.00
.............................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	4	26.25	0.00	26.25	0.00
.............................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	4	25.00	0.00	24.50	0.50
.............................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	4	24.25	0.00	23.75	0.50
.............................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	4	23.75	0.00	23.50	0.25
.............................................................................TATCATAGTGGCTGTTCTTTTT.....................	22	4	23.50	0.00	23.50	0.00
.............................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	5	18.40	0.00	18.20	0.20
.............................................................................TACCACAGTGGCTGTTCTTTTT.....................	22	4	22.00	0.00	21.50	0.50
...............................................................................TATCAGTGGCTGTTCTTTT......................	19	4	21.75	0.00	21.25	0.50
.............................................................................TATCACAGTGGCTGTTCTTTTC.....................	22	4	21.50	0.00	21.25	0.25
.............................................................................TATCACAGTCGCTGTTCTTTTT.....................	22	4	21.25	0.00	21.25	0.00
.............................................................................GATCACAGTGGCTGTTCTTTTT.....................	22	4	21.25	0.00	21.25	0.00
............................................................................CTATCACAGTGGCTGTTCTTTTT.....................	23	4	21.00	0.00	21.00	0.00
.............................................................................TATCACATTGGCTGTTCTTTTT.....................	22	4	19.75	0.00	19.75	0.00
.............................................................................TATCACAGTGGCTGATCTTTTT.....................	22	4	18.50	0.00	18.50	0.00
.............................................................................TATTACAGTGGCTGTTCTTTT......................	21	4	18.25	0.00	18.25	0.00
.............................................................................TATCACAGTGGCTGTTCCTTT......................	21	5	14.20	0.00	14.20	0.00
.............................................................................CATCACAGTGGCTGTTCTTTTT.....................	22	4	17.50	0.00	17.50	0.00
.............................................................................TATCACTGTGGCTGTTCTTTTT.....................	22	4	17.25	0.00	17.25	0.00
.............................................................................TATCACAGTGGCTxTTCTTTT......................	20	4	16.50	0.00	16.50	0.00
.............................................................................TATCACACTGGCTGTTCTTTTT.....................	22	4	16.25	0.00	16.25	0.00
.............................................................................TATCACAGTGGCTGTTTTTTT......................	21	5	13.00	0.00	12.80	0.20
.............................................................................TATCACAGTGTCTGTTCTTTTT.....................	22	4	16.00	0.00	15.25	0.75
.............................................................................TATCACAGTGGTTGTTCTTTT......................	21	4	15.75	0.00	15.75	0.00
.............................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	4	15.75	0.00	15.25	0.50
.............................................................................TATCACAGTGGCTCTTCTTTTT.....................	22	4	14.50	0.00	14.25	0.25
.............................................................................TATCACAGTGGCTGCTCTTTT......................	21	4	14.50	0.00	14.50	0.00
.............................................................................TATCACGGTGGCTGTTCTTTT......................	21	4	14.25	0.00	14.25	0.00
.............................................................................TATCACAGTGGCTGTTCTTCTT.....................	22	4	14.00	0.00	14.00	0.00
.............................................................................TATCTCAGTGGCTGTTCTTTTT.....................	22	4	13.50	0.00	13.50	0.00
.............................................................................TATCACAGTGACTGTTCTTTTT.....................	22	4	12.75	0.00	12.75	0.00
.............................................................................TATCATAGTGGCTGTTCTTTT......................	21	4	12.75	0.00	12.75	0.00
.............................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	4	12.25	0.00	12.00	0.25
...............................................................................TCACAGTGGCTGTTCTTTTT.....................	20	4	12.25	0.00	12.00	0.25
.............................................................................TGTCACAGTGGCTGTTCTTTTT.....................	22	4	11.75	0.00	11.75	0.00
.............................................................................TATCACAGAGGCTGTTCTTTTT.....................	22	4	11.50	0.00	11.25	0.25
.............................................................................TATCGCAGTGGCTGTTCTTTT......................	21	4	11.50	0.00	11.50	0.00
.............................................................................TATCACAGTGGCTGTTCTTTCT.....................	22	4	10.75	0.00	10.75	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	4	10.50	0.00	10.25	0.25
.............................................................................TATCACAATGGCTGTTCTTTTT.....................	22	4	9.50	0.00	9.50	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	4	9.50	0.00	9.50	0.00
.............................................................................TATCACAGTGGCAGTTCTTTTT.....................	22	4	9.25	0.00	9.25	0.00
............................AGGGAACGGTTGCTGATGATGT......................................................................	22	1	35.00	0.00	35.00	0.00
.............................................................................TATCACAGTGGCCGTTCTTTT......................	21	4	8.50	0.00	8.25	0.25
.............................................................................TTTCACAGTGGCTGTTCTTTTT.....................	22	4	8.50	0.00	8.50	0.00
.............................................................................TATCACAGTGGCTATTCTTTTT.....................	22	4	8.50	0.00	8.50	0.00
.................................................................................ACAGTGGCTGTTCTTTTTG....................	19	4	8.25	0.00	8.25	0.00
.............................................................................TATCACAGTGGCTGTCCTTTT......................	21	4	8.00	0.00	7.75	0.25
.............................................................................TATCACAGTGGCTGTTCTTTTTC....................	23	4	8.00	0.00	8.00	0.00
.............................................................................TATCACAGTGGCTTTTCTTTT......................	21	4	7.75	0.00	7.75	0.00
.............................................................................TATCACAGTGGCTGTTCTCTTTG....................	23	4	7.75	0.00	7.75	0.00
.............................................................................TATCACAGCGGCTGTTCTTTT......................	21	4	7.50	0.00	7.50	0.00
.................................................................................ACAGTGGCTGGTCTTTTT.....................	18	4	7.50	0.00	7.50	0.00
..............................................................................ATCACAGTGGCTGTTCTTTTTG....................	22	4	7.25	0.00	7.25	0.00
.............................................................................TATCACAGTGGCTGTACTTTTT.....................	22	4	7.25	0.00	7.25	0.00
.............................................................................TATCACCGTGGCTGTTCTTTTT.....................	22	4	6.75	0.00	6.50	0.25
.............................................................................TATCACATTGGCTGTTCTTTT......................	21	4	6.75	0.00	6.75	0.00
.............................................................................CATCACAGTGGCTGTTCTTTT......................	21	4	6.50	0.00	6.50	0.00
.............................................................................TATCACAGTxGCTGTTCTTTT......................	20	4	6.50	0.00	6.50	0.00
.............................................................................GATCACAGTGGCTGTTCTTTT......................	21	4	6.25	0.00	6.25	0.00
..............................................................................TTCACAGTGGCTGTTCTTTTT.....................	21	4	6.25	0.00	6.25	0.00
.............................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	4	6.00	0.00	6.00	0.00
.............................................................................TACCACAGTGGCTGTTCTTTT......................	21	4	6.00	0.00	6.00	0.00
.............................................................................TATCACAGTGGCTGTTCTCTT......................	21	4	6.00	0.00	6.00	0.00
.............................................................................TATCACAGTGGTTGTTCTTTTTG....................	23	4	5.75	0.00	5.50	0.25
.............................................................................TATCACACTGGCTGTTCTTTT......................	21	4	5.75	0.00	5.75	0.00
............................................................................CTATCACAGTGGCTGTTCTTTT......................	22	4	5.75	0.00	5.75	0.00
.............................................................................TATCACAGTGCCTGTTCTTTT......................	21	4	5.75	0.00	5.75	0.00
.............................................................................TATCACAGTGGCTGTTCTTCT......................	21	4	5.75	0.00	5.75	0.00
.............................................................................TATCACAGTGGCxxTTCTTTT......................	19	4	5.75	0.00	5.75	0.00
.............................................................................TATCACAGTGGCTCTTCTTTT......................	21	4	5.50	0.00	5.50	0.00
.............................................................................TGTCACAGTGGCTGTTCTTTT......................	21	4	5.50	0.00	5.50	0.00
.............................................................................TATCACAGAGGCTGTTCTTTT......................	21	4	5.50	0.00	5.50	0.00
.............................................................................TCTCACAGTGGCTGTTCTTTTT.....................	22	4	5.50	0.00	5.50	0.00
...............................................................................TATCAGTGGCTGTTCTTT.......................	18	4	5.25	0.00	5.00	0.25

droYak2

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CTCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACAT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............................AGGGAACGGTTGCTGATGATGTA.....................................................................	23	2	51.00	51.00	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	7	2.43	0.71	0.00	1.71	0.00	0.00
.............................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	7	2.43	2.43	0.00	0.00	0.00	0.00
............................AGGGAACGGTTGCTGATGATGT......................................................................	22	2	8.50	8.50	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGACTGTTCTTTTT.....................	22	7	2.14	2.14	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	7	1.57	1.57	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	7	1.57	1.29	0.00	0.14	0.00	0.14
............................AGGGAACGGTTGCTGATGATG.......................................................................	21	2	4.50	4.00	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGGCTGTTCTTTT......................	21	7	1.29	0.14	0.00	1.14	0.00	0.00
.............................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	7	1.14	1.14	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTATTTTT.....................	22	7	1.14	1.14	0.00	0.00	0.00	0.00
.............................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	7	0.86	0.86	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	7	0.71	0.71	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	7	0.71	0.29	0.00	0.00	0.14	0.29
.............................................................................TATCACAGTGACTGTTCTTTT......................	21	7	0.71	0.71	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTAGCTGTTCTTTT......................	21	7	0.57	0.57	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTGTTTT......................	21	7	0.57	0.57	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCCTTTT.....................	22	7	0.57	0.57	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	7	0.57	0.57	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTTTT........................	19	7	0.57	0.57	0.00	0.00	0.00	0.00
.............................................................................TATCACGGTGGCTGGTCTTTTT.....................	22	7	0.57	0.57	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	7	0.43	0.43	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGGTGTTCTTTTT.....................	22	7	0.43	0.43	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTGTTT.......................	20	7	0.43	0.43	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	7	0.43	0.43	0.00	0.00	0.00	0.00
.........................AGAAGGGAACGGTTGCTGATGAT........................................................................	23	2	1.50	1.00	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGGCTGGTTTTTT......................	21	7	0.43	0.29	0.00	0.00	0.00	0.14

droEre2

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................AGGGAACGGTGGCTGATGATGTA.....................................................................	23	1	28.00	28.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	4	5.25	1.25	0.00	0.00	4.00
.............................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	4	3.00	3.00	0.00	0.00	0.00
.............................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	4	2.50	2.50	0.00	0.00	0.00
.............................................................................TATCACAGTGACTGTTCTTTTT.....................	22	4	2.00	2.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	4	1.75	1.75	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	4	1.25	1.25	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTT.......................	20	4	1.25	0.25	0.00	0.00	1.00
.............................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	5	0.80	0.80	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTTTTT.......................	20	4	0.75	0.75	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTT......................	21	4	0.75	0.75	0.00	0.00	0.00
............................AGGGAACGGTGGCTGATGATGT......................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTATTTTT.....................	22	4	0.75	0.75	0.00	0.00	0.00
.............................................................................TATCACGGTGGCTGTTCTTTT......................	21	4	0.75	0.75	0.00	0.00	0.00
............................AGGGAACGGTGGCTGATGATG.......................................................................	21	1	3.00	3.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTC....................	23	4	0.75	0.75	0.00	0.00	0.00

droEug1

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT

Size

Hit Count

Total Norm

droBia1

AAA-----TTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACTCT----CACAGTTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT

Size

Hit Count

Total Norm

droTak1

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT

Size

Hit Count

Total Norm

droEle1

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT

Size

Hit Count

Total Norm

droRho1

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGT

Size

Hit Count

Total Norm

droFic1

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGT

Size

Hit Count

Total Norm

droKik1

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATTCA----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT

Size

Hit Count

Total Norm

droAna3

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATTCG----CATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................AGGGAACGGTCGCTGCTGATGTA.....................................................................	23	2	10.50	0.00	0.50	0.00	10.00
.............................................................................TATCACAGTGGCTGTTCTTTT......................	21	7	1.71	0.29	1.14	0.00	0.29
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	7	1.57	1.00	0.57	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTT.......................	20	7	1.43	1.14	0.29	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTT........................	19	7	0.71	0.29	0.43	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTT.......................	20	7	0.43	0.14	0.00	0.00	0.29
.............................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	7	0.43	0.14	0.14	0.00	0.14
.............................................................................TATCACAGTGGCTGGTCTTTT......................	21	7	0.29	0.00	0.29	0.00	0.00
.............................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.29
.............................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	8	0.25	0.00	0.00	0.00	0.25
.............................................................................TATCACAGTGACTGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.29
.............................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.29
.............................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	7	0.29	0.14	0.14	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTTTTT.................	26	2	1.00	0.00	0.00	0.00	1.00
.............................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGTCT.........................	18	7	0.14	0.00	0.14	0.00	0.00
...........................AAGGGAACGGGCGGTGC............................................................................	17	2	0.50	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTTTTTT.................	26	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGGCTGTTGTTTTTTTT..................	25	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGGCTGTGCTTTT......................	21	7	0.14	0.14	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTTTTTT................	27	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACATTGTCTGTTCTTTT......................	21	7	0.14	0.14	0.00	0.00	0.00
............................AGGGAACGGTCGCTGCTGATGT......................................................................	22	2	0.50	0.00	0.00	0.00	0.50
.........TGAAATTTGTTCCAAAAGA............................................................................................	19	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
............................AGGGAACGGTCGCTGCTCATGTA.....................................................................	23	2	0.50	0.00	0.00	0.00	0.50
..............ATTGTTGAAAAGGAAGGG........................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTC......................	21	7	0.14	0.00	0.14	0.00	0.00
...........................AAGGGAACGGTCTTTGC............................................................................	17	2	0.50	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	7	0.14	0.00	0.14	0.00	0.00
............................AGGGAACGGTCGCTGCTGATCAA.....................................................................	23	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	7	0.14	0.00	0.14	0.00	0.00
.............................................................................TATCACAGTCGCTGTTCTTTTTTT...................	24	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGGCTGGTCGTTTTT....................	23	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACAGGGGCTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
............................AGGGAACGGGCGCTGCTGTTGTA.....................................................................	23	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	7	0.14	0.00	0.14	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	7	0.14	0.14	0.00	0.00	0.00
............................AGGGAACGGTCGCTGCCGATGTA.....................................................................	23	2	0.50	0.00	0.00	0.00	0.50
.............................................................................GATCACAGTGGCTGTGCT.........................	18	7	0.14	0.00	0.00	0.00	0.14
............................AGGGAACGGTTGCTGCTGATGTA.....................................................................	23	5	0.20	0.00	0.00	0.00	0.20
.............................................................................TATCACAGTGGCTGTTGTTTTTT....................	23	7	0.14	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	8	0.13	0.00	0.13	0.00	0.00
.............................................................................TATCACAGTGGCTGTTGTTTTTTTTT.................	26	2	0.50	0.00	0.00	0.00	0.50
............................AGGGATCGGGCGCTGCT...........................................................................	17	2	0.50	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	2	0.50	0.00	0.00	0.00	0.50
...........................AAGGGAACGGCCGGTGC............................................................................	17	2	0.50	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGGCTGTTTTTGT......................	21	7	0.14	0.00	0.00	0.14	0.00
.............................................................................TATAACAGTGGCTGTTCTTTT......................	21	7	0.14	0.00	0.14	0.00	0.00
.............................................................................TATCACAGTGACTGTTCTTTTTT....................	23	7	0.14	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGTCTTTTTTT...................	24	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
..............ATTGTTGAAAGAGAAGGG........................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
.............................................................................TATCACAGCGGCTGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
...........................AAGGGAACGGGAGCTG.............................................................................	16	2	0.50	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
..........................CAAGGGAACGGGCGCTG.............................................................................	17	2	0.50	0.00	0.00	0.50	0.00
.............AATTGTTGAAAGAGAAGGG........................................................................................	19	2	0.50	0.00	0.50	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTGTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGTTCTTTTTCTT..................	25	2	0.50	0.00	0.00	0.00	0.50
...........................AAGGGAACGGGAGCTGCT...........................................................................	18	2	0.50	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGGCTGGTGTTTT......................	21	7	0.14	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
...........................AAGGGAACGGGCTCTGC............................................................................	17	2	0.50	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGGCTTTTGTTTT......................	21	7	0.14	0.00	0.00	0.00	0.14
..........................CAAGGGAACGGGCGCTGCT...........................................................................	19	2	0.50	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTTC...................	24	4	0.25	0.00	0.00	0.00	0.25
.............................................................................TATCACAGTGGTTGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGTTTTTT......................	21	7	0.14	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGTCCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGATGTTCTTT.......................	20	7	0.14	0.14	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGGCTTTTTT....................	23	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGGCTGCTCCTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
............AAATTGTTCAAAGGGAAGG.........................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGxTCTTTTTTTTT.................	25	2	0.50	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGGCTGTTCTTGTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGGCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGTCTTCTT.....................	22	7	0.14	0.00	0.00	0.00	0.14

droBip1

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATTCG----CCTCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT

Size

Hit Count

Total Norm

dp4

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTTG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............................AGGGAACGGTTGCTGCTGATGTA.....................................................................	23	2	67.50	0.00	67.50	0.00	0.00
.............................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	8	1.50	0.00	1.50	0.00	0.00
.............................................................................TATCACAGTGACTGTTCTTTTT.....................	22	8	1.38	0.00	1.38	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	8	1.25	0.00	1.25	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	8	1.25	0.88	0.38	0.00	0.00
.............................................................................TATCACAGTGGCTGGTATTTTT.....................	22	8	1.13	0.00	1.13	0.00	0.00
.............................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	8	1.00	0.00	1.00	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTT......................	21	8	0.88	0.63	0.25	0.00	0.00
............................AGGGAACGGTTGCTGCTGATG.......................................................................	21	2	3.00	0.00	3.00	0.00	0.00
............................AGGGAACGGTTGCTGCTGATGT......................................................................	22	2	3.00	0.00	3.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	8	0.63	0.00	0.63	0.00	0.00
.............................................................................TATCACAGTGGCTGGTGTTTT......................	21	8	0.63	0.00	0.63	0.00	0.00
.............................................................................TATCACGGTGGCTGTTCTTTTTT....................	23	8	0.50	0.00	0.50	0.00	0.00
.............................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	8	0.50	0.00	0.50	0.00	0.00
.............................................................................TATCACAGTAGCTGTTCTTTT......................	21	8	0.38	0.00	0.38	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTT......................	21	8	0.38	0.00	0.38	0.00	0.00
............................AGGGAACGGTTGCTGCTGATTTA.....................................................................	23	2	1.50	0.00	1.50	0.00	0.00
.............................................................................TATCACAGTGGCTGGTGTT........................	19	8	0.38	0.00	0.38	0.00	0.00
............................AGGGAACGGTTGCTGCTGATGTAA....................................................................	24	2	1.50	0.00	1.50	0.00	0.00
.............................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	8	0.38	0.00	0.38	0.00	0.00
.............................................................................TATCACAGTGGCTGGGCTTTTTT....................	23	2	1.50	0.00	1.50	0.00	0.00
.............................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	2	1.50	0.00	1.50	0.00	0.00
.............................................................................TATCACAGTAGCTGTTCTTT.......................	20	8	0.38	0.00	0.38	0.00	0.00

droPer1

AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTCG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.............................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	7	58.14	0.14	0.00	0.00	0.00	58.00
.............................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	7	42.00	0.00	0.00	0.00	0.00	42.00
.............................................................................TATCACAGTGGCTGGTCTTTT......................	21	7	35.86	0.14	0.29	0.00	0.00	35.43
.............................................................................TATCACAGTGGCTGGTTTTTT......................	21	7	11.00	0.00	0.00	0.00	0.00	11.00
.............................................................................TATCACAGTGGCTGGTCTTT.......................	20	7	7.14	0.14	0.00	0.00	0.00	7.00
.............................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	7	4.86	0.00	0.00	0.00	0.00	4.86
.............................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	7	4.57	0.00	0.00	0.00	0.00	4.57
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	7	3.57	2.14	0.00	0.00	0.14	1.29
.............................................................................TATCACAGTGGCTGGTTTTTTTT....................	23	2	12.50	0.00	0.00	0.00	0.00	12.50
............................AGGGAACGGTTGCTGCTGATGTA.....................................................................	23	2	7.50	0.00	5.50	0.00	0.00	2.00
.............................................................................TATCACAGTGGCTGTTCTTTT......................	21	7	1.86	0.71	0.00	0.00	0.00	1.14
.............................................................................TATCACATTGGCTGGTCTTTTT.....................	22	7	1.57	0.00	0.00	0.00	0.00	1.57
.............................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	7	1.14	0.00	0.00	0.00	0.00	1.14
.............................................................................TATCACAGTGGCTGGTTTTT.......................	20	7	1.14	0.00	0.00	0.00	0.00	1.14
.............................................................................TATCACAGTGACTGTTCTTTTT.....................	22	7	1.14	0.00	0.71	0.00	0.14	0.29
............................AGGGAACTGTTGCTGCTGATATA.....................................................................	23	5	1.40	0.00	0.00	0.00	0.00	1.40
.............................................................................TATCACAGTGGCTGTTCTTT.......................	20	7	1.00	0.14	0.00	0.00	0.00	0.86
.............................................................................TATCACAGTGGCTGGTGTTTT......................	21	7	0.86	0.00	0.14	0.00	0.14	0.57
.............................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	8	0.63	0.25	0.00	0.00	0.00	0.38
.............................................................................TATCACAGTGGCTGGTCTT........................	19	7	0.71	0.00	0.14	0.00	0.00	0.57
.............................................................................TATCACAGTGGCTTTTCTTTTTG....................	23	7	0.57	0.00	0.00	0.00	0.00	0.57
.............................................................................TATCACAGTGGCTGGTCTTTTTTT...................	24	4	1.00	0.00	0.00	0.00	0.00	1.00
............................AGGGAACGGTTGCTGCTGATG.......................................................................	21	2	2.00	0.00	1.00	0.00	0.50	0.50
.............................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	7	0.57	0.00	0.57	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCT.........................	18	7	0.43	0.00	0.00	0.00	0.00	0.43
............................AGGGAACGGTTGCTCCTGATGTA.....................................................................	23	2	1.50	0.00	0.00	0.00	0.00	1.50
..................................CGGTTGCTGTTGATGTCG....................................................................	18	4	0.75	0.00	0.00	0.00	0.00	0.75
.............................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	7	0.43	0.43	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	7	0.29	0.00	0.29	0.00	0.00	0.00
............................................................................CTATCACAGTGGCTGGTCTT........................	20	7	0.29	0.00	0.00	0.00	0.00	0.29
.............................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.00	0.29
.............................................................................TATCACAGTAGCTGTTCTTTT......................	21	7	0.29	0.00	0.14	0.00	0.14	0.00
............................AGGGAACGGTTGCTGCTGATGTAA....................................................................	24	2	1.00	0.00	1.00	0.00	0.00	0.00
............................AGTGAACGGTTGCTGCTGATG.......................................................................	21	2	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................TATCACAGTGGCTGGTATTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.00	0.29
....................................GTTGCTGCGGATGGAGTTC-................................................................	19	2	1.00	1.00	0.00	0.00	0.00	0.00
............................................................................ATATCACAGTGGCTGGTCTTTT......................	22	7	0.29	0.00	0.00	0.00	0.00	0.29
.............................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	7	0.29	0.00	0.00	0.00	0.00	0.29
.............................................................................TATCACATTGGCTGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.00	0.29
.............................................................................TATCACAGTGGCTAATCTTTTT.....................	22	7	0.29	0.00	0.29	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	7	0.29	0.00	0.00	0.00	0.00	0.29
.............................................................................TATCACAGTGGCTGGTCTTTTTC....................	23	7	0.29	0.00	0.00	0.00	0.00	0.29
.............................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGGCTTT.......................	20	7	0.14	0.00	0.14	0.00	0.00	0.00
.............................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	8	0.13	0.00	0.13	0.00	0.00	0.00
..............................................................................ATCACAGTGGCTGGTCTTTTTT....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGACTGTTCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGTCTTTTTTTTT.................	26	2	0.50	0.00	0.50	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGAGCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14	0.00
.............................................................................TATCACAGTGGCTGGTATTTT......................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGTCCT........................	19	7	0.14	0.00	0.14	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACGGTGGCTGGTCTTTTT.....................	22	7	0.14	0.00	0.14	0.00	0.00	0.00
.............................................................................TATCACATTGGCTGTTCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCGCAGTGGCTGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCCGTTCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGGGGCTGTTCTTTTTT....................	23	7	0.14	0.00	0.14	0.00	0.00	0.00
.............................................................................TATCACATTGGCTGTTTTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
...........................AAGGGAACGATTGCTGGT...........................................................................	18	2	0.50	0.00	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGGCTGGTGTTT.......................	20	7	0.14	0.00	0.00	0.00	0.00	0.14
............................AGGGACCGGTTGGTGCTGATGTA.....................................................................	23	2	0.50	0.00	0.50	0.00	0.00	0.00
..............................................................................ATCACAGTGGCTGGTCTTTTT.....................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
............................AGGGAACGGTTGCTGATGATGTA.....................................................................	23	2	0.50	0.50	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGGCTTTTTT....................	23	2	0.50	0.00	0.00	0.00	0.00	0.50
............................................................................ATATCACAGTGGCTGGTTTTTT......................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACGGTGGCTGTTCTTTT......................	21	7	0.14	0.00	0.14	0.00	0.00	0.00
.............................................................................TACCACAGTGGCTGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
............................AGGGAACGGTTGCTGCTGATGTAGT...................................................................	25	2	0.50	0.00	0.50	0.00	0.00	0.00
............................AGGGAACGGTTGCTGCTGCTCTA.....................................................................	23	2	0.50	0.00	0.00	0.00	0.50	0.00
.............................................................................TATCACAGTGGCTTTTCTT........................	19	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	7	0.14	0.00	0.14	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTTTTCT.........................	18	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	2	0.50	0.00	0.00	0.00	0.00	0.50
.............................................................................TATCACAGTGCCTGGTCTTT.......................	20	7	0.14	0.00	0.00	0.00	0.14	0.00
.............................................................................TATCACATTGACTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACxxTGGCTGTTCTTTTT.....................	20	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGTCGTTTT.....................	22	7	0.14	0.00	0.14	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACGGTGGCTGTTCTTT.......................	20	7	0.14	0.00	0.14	0.00	0.00	0.00
.............................................................................TATCACAGCGGCTGGTCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
............................AGGGAACGGTTGCTGCTGATGT......................................................................	22	2	0.50	0.00	0.50	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTATTTTTT....................	23	2	0.50	0.00	0.00	0.00	0.00	0.50
.............................................................................TATCACxxTGGCTGTTCTTTT......................	19	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGTTCTTC.......................	20	7	0.14	0.00	0.00	0.00	0.00	0.14
............................................................................ATATCACAGTGGCTGGTTTTTTT.....................	23	7	0.14	0.00	0.00	0.00	0.00	0.14
..............................................................................ATCACAGTGGCTGGTCTTTTTG....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGTGGCTGGTGTT........................	19	7	0.14	0.00	0.14	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTxTTCTTTT......................	20	7	0.14	0.00	0.00	0.00	0.00	0.14
.............................................................................TATCACAGCGGCTGGTCTTT.......................	20	7	0.14	0.00	0.00	0.00	0.00	0.14

droWil1

CAT-----TT----TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAA--TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC--	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	8	12957.50	0.00	12956.88	0.63	0.00
.............................................................................TATCACAGTGGCTGTTCTTTT......................	21	8	3038.38	0.13	3038.00	0.25	0.00
.............................................................................TATCACAGTGGCTGTTCTTT.......................	20	8	430.88	0.63	430.13	0.13	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTTA....................	23	8	411.00	0.00	411.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	8	215.75	0.00	214.00	1.50	0.25
.............................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	8	193.25	0.00	193.13	0.13	0.00
.............................................................................TATCACAGTGGCTGTTCTT........................	19	8	119.25	0.00	118.75	0.50	0.00
............................AGGGAACGGTTGCTGTTGATGTA.....................................................................	23	2	420.50	0.00	420.50	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	8	80.75	0.00	80.75	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	8	70.63	0.00	70.63	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCT.........................	18	8	47.75	0.00	47.75	0.00	0.00
.............................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	8	34.25	0.00	34.25	0.00	0.00
.............................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	8	33.38	0.00	33.25	0.13	0.00
.............................................................................TATCACAGTGGATGTTCTTTTT.....................	22	8	30.00	0.00	30.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTT......................	21	8	28.38	0.00	27.38	0.50	0.50
.............................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	8	27.00	0.00	27.00	0.00	0.00
.............................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	10	21.50	0.00	21.40	0.10	0.00
.............................................................................TATCACAGTGGCTGTTCCTTTT.....................	22	10	21.30	0.00	21.30	0.00	0.00
.............................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	10	19.40	0.00	19.40	0.00	0.00
.............................................................................TATCACAGTGTCTGTTCTTTTT.....................	22	8	24.00	0.00	24.00	0.00	0.00
.............................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	8	21.88	0.00	21.88	0.00	0.00
.............................................................................TATAACAGTGGCTGTTCTTTTT.....................	22	8	21.25	0.00	21.25	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	8	20.13	0.00	20.13	0.00	0.00
.............................................................................TATCACAGTGGCTGTTATTTTT.....................	22	8	18.88	0.00	18.88	0.00	0.00
.................................................................................ACAGTGGCTGTTCTTTTT.....................	18	8	16.75	0.00	16.75	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTCTTT.....................	22	8	16.00	0.00	16.00	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTAA....................	23	8	15.63	0.00	15.63	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTC.....................	22	8	15.00	0.00	15.00	0.00	0.00
.............................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	8	14.75	0.00	14.63	0.13	0.00
.............................................................................TATCACATTGGCTGTTCTTTTT.....................	22	8	14.13	0.00	14.13	0.00	0.00
.............................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	8	13.25	0.00	13.25	0.00	0.00
............................................................................CTATCACAGTGGCTGTTCTTTTT.....................	23	8	12.38	0.00	12.38	0.00	0.00
.............................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	8	12.25	0.00	12.25	0.00	0.00
.............................................................................TATCGCAGTGGCTGTTCTTTTT.....................	22	8	12.25	0.00	12.25	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTTC....................	23	8	12.13	0.00	12.13	0.00	0.00
.............................................................................TATCACAGTCGCTGTTCTTTTT.....................	22	8	11.38	0.00	11.25	0.13	0.00
.............................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	8	11.25	0.00	11.25	0.00	0.00
.............................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	8	11.00	0.00	11.00	0.00	0.00
.............................................................................TACCACAGTGGCTGTTCTTTTT.....................	22	8	10.88	0.00	10.88	0.00	0.00
............................AGGGAACGGTTGCTGTTGATGT......................................................................	22	2	42.50	0.00	42.50	0.00	0.00
.............................................................................CATCACAGTGGCTGTTCTTTTT.....................	22	8	10.38	0.00	10.38	0.00	0.00
.............................................................................TATCACACTGGCTGTTCTTTTT.....................	22	8	9.00	0.00	9.00	0.00	0.00
.............................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	8	8.75	0.00	8.75	0.00	0.00
.............................................................................TATCACAGTGGCTxTTCTTTT......................	20	8	8.63	0.00	8.50	0.13	0.00
..............................................................................ATCACAGTGGCTGTTCTTTTT.....................	21	8	8.50	0.00	8.50	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCCTTT......................	21	10	6.50	0.00	6.40	0.10	0.00
.............................................................................TATCACAGTGGCTGTTCTTCTT.....................	22	8	8.13	0.00	8.13	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTCT.....................	22	8	7.75	0.00	7.75	0.00	0.00
.............................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	8	7.63	0.00	7.63	0.00	0.00
.............................................................................TATCACAGTGGATGTTCTTTT......................	21	8	7.13	0.00	7.13	0.00	0.00
.............................................................................TATCACAGCGGCTGTTCTTTT......................	21	8	7.13	0.00	7.13	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTG.....................	22	8	7.00	0.00	7.00	0.00	0.00
............................AGGGAACGGTTGCTGTTGATG.......................................................................	21	2	27.00	0.00	27.00	0.00	0.00
.............................................................................TATCACAGTTGCTGTTCTTTT......................	21	10	5.40	0.00	5.40	0.00	0.00
.............................................................................TATTACAGTGGCTGTTCTTTTT.....................	22	8	6.63	0.00	6.63	0.00	0.00
.............................................................................TATCACAGTGTCTGTTCTTTT......................	21	8	6.13	0.00	6.13	0.00	0.00
.............................................................................TATCACAGTGACTGTTCTTTTT.....................	22	8	6.13	0.00	6.13	0.00	0.00
.............................................................................TATCACAGTGGCTATTCTTTTT.....................	22	8	6.00	0.00	6.00	0.00	0.00
.............................................................................TATCACAGTGGCTGATCTTTTT.....................	22	8	6.00	0.00	6.00	0.00	0.00
.............................................................................TGTCACAGTGGCTGTTCTTTTT.....................	22	8	5.88	0.00	5.88	0.00	0.00
.............................................................................TATCATAGTGGCTGTTCTTTTT.....................	22	8	5.88	0.00	5.88	0.00	0.00
.............................................................................TATCACAGTGGCTGCTCTTTT......................	21	8	5.63	0.00	5.63	0.00	0.00
.............................................................................TATCACATTGGCTGTTCTTTT......................	21	8	5.25	0.00	5.25	0.00	0.00
.............................................................................TATCACAGTGGCTCTTCTTTTT.....................	22	8	5.25	0.00	5.13	0.13	0.00
...............................................................................TATCAGTGGCTGTTCTTTTT.....................	20	8	5.13	0.00	5.13	0.00	0.00
.............................................................................TATCACAATGGCTGTTCTTTTT.....................	22	8	5.00	0.00	5.00	0.00	0.00
.............................................................................TATCCCAGTGGCTGTTCTTTTT.....................	22	8	5.00	0.00	5.00	0.00	0.00
.............................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	8	4.88	0.00	4.88	0.00	0.00
.............................................................................TATCACAGTGGCTGTTATTTT......................	21	8	4.75	0.00	4.75	0.00	0.00
.............................................................................TATCACCGTGGCTGTTCTTTTT.....................	22	8	4.50	0.00	4.50	0.00	0.00
.............................................................................TATAACAGTGGCTGTTCTTTT......................	21	8	4.00	0.00	4.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTA....................	23	8	4.00	0.00	4.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTT.......................	20	8	3.88	0.00	3.63	0.00	0.25
............................................................................CTATCACAGTGGCTGTTCTTTT......................	22	8	3.88	0.00	3.88	0.00	0.00
.............................................................................TATCACAGTGGCTTTTCTTTT......................	21	8	3.88	0.00	3.88	0.00	0.00
............................AGGGAACGGTTGCTGTTGATGTAA....................................................................	24	2	15.50	0.00	15.50	0.00	0.00
.............................................................................TATCGCAGTGGCTGTTCTTTT......................	21	8	3.75	0.00	3.75	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTTTA...................	24	8	3.75	0.00	3.75	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	8	3.63	0.00	3.38	0.13	0.13
.............................................................................TATCACAGTGGCTGTTCTTTA......................	21	8	3.38	0.00	3.38	0.00	0.00
.............................................................................TCTCACAGTGGCTGTTCTTTTT.....................	22	8	3.38	0.00	3.38	0.00	0.00
............................................................................ATATCACAGTGGCTGTTCTTTT......................	22	8	3.25	0.00	3.25	0.00	0.00
.............................................................................GATCACAGTGGCTGTTCTTTTT.....................	22	8	3.25	0.00	3.25	0.00	0.00
.............................................................................TATCACAGTGGCCGTTCTTTT......................	21	8	3.13	0.00	3.13	0.00	0.00
.............................................................................TATCACAGTxGCTGTTCTTTT......................	20	8	3.13	0.00	3.13	0.00	0.00
.............................................................................TATCACAGAGGCTGTTCTTTTT.....................	22	8	3.00	0.00	3.00	0.00	0.00
.............................................................................TATCACAGTGGCTGTTTTTTT......................	21	10	2.40	0.00	2.40	0.00	0.00
.............................................................................TACCACAGTGGCTGTTCTTTT......................	21	8	2.88	0.00	2.88	0.00	0.00
.............................................................................TATCACGGTGGCTGTTCTTTT......................	21	8	2.88	0.00	2.88	0.00	0.00
.............................................................................CATCACAGTGGCTGTTCTTTT......................	21	8	2.88	0.00	2.88	0.00	0.00
.............................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	8	2.75	0.00	2.75	0.00	0.00
.............................................................................TAACACAGTGGCTGTTCTTTTT.....................	22	8	2.75	0.00	2.75	0.00	0.00
.............................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	8	2.75	0.00	1.75	0.50	0.50
.............................................................................TATCAAAGTGGCTGTTCTTTTT.....................	22	8	2.63	0.00	2.63	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTTTTT...................	24	8	2.50	0.00	2.50	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTCTT......................	21	8	2.50	0.00	2.50	0.00	0.00
...............................................................................TCACAGTGGCTGTTCTTTTT.....................	20	8	2.38	0.00	2.38	0.00	0.00
.............................................................................TATCACAGGGGCTGTTCTTTTT.....................	22	8	2.38	0.00	2.38	0.00	0.00
.............................................................................TATTACAGTGGCTGTTCTTTT......................	21	8	2.25	0.00	2.25	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTCT......................	21	8	2.25	0.00	2.25	0.00	0.00
................................................................................CACAGTGGCTGTTCTTTTT.....................	19	8	2.25	0.00	2.25	0.00	0.00

droVir3

CGC-----TCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTTTG----TACTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAACTT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................AGAGAACGTTCGCTGTTGATGTA.....................................................................	23	2	73.50	0.00	0.00	73.50	0.00	0.00
............................AGAGAACGTTCGCTGTTGATGT......................................................................	22	2	20.00	0.00	0.00	20.00	0.00	0.00
............................AGAGAACGTTCGCTGTTGATG.......................................................................	21	2	18.50	0.50	0.00	18.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	7	1.29	0.00	0.00	0.86	0.29	0.14
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	7	1.14	0.86	0.00	0.29	0.00	0.00
.............................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	7	1.14	0.00	0.00	1.14	0.00	0.00
.............................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	7	0.86	0.14	0.00	0.71	0.00	0.00
.............................................................................TATCACAGTGGCTGTTCTTTT......................	21	7	0.71	0.57	0.00	0.14	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTTTT..................	25	2	2.50	0.00	0.00	2.00	0.00	0.50
.............................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	7	0.57	0.00	0.00	0.57	0.00	0.00
.............................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	7	0.57	0.00	0.00	0.57	0.00	0.00
.............................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	7	0.57	0.00	0.00	0.14	0.43	0.00
.............................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	7	0.57	0.00	0.00	0.29	0.00	0.29
............................AGAGAACGTTCGCTGTTGATGTT.....................................................................	23	2	1.50	0.00	0.00	1.50	0.00	0.00
.............AATTGTTGAAAAGGAAGGG........................................................................................	19	2	1.50	1.50	0.00	0.00	0.00	0.00
.............................................................................TATCACAGTGGCTGGTCTTTT......................	21	7	0.43	0.00	0.00	0.29	0.00	0.14
.............................................................................TATCACAGTGGCTGGTCTTTTTTTTT.................	26	2	1.50	0.00	0.00	1.50	0.00	0.00
............................AGAGAACGTTCGCTGTTGATTTA.....................................................................	23	2	1.50	0.00	0.00	1.50	0.00	0.00
.............................................................................TATCACAGTGGCTGGTATTTTT.....................	22	7	0.43	0.00	0.00	0.43	0.00	0.00
.............................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	7	0.43	0.00	0.00	0.43	0.00	0.00

droMoj3

AATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCATT----TAATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................AGAGAACGTTCGCTGTTGATGT......................................................................	22	1	204.00	0.00	0.00	0.00	204.00
............................AGAGAACGTTCGCTGTTGATGTA.....................................................................	23	1	146.00	0.00	0.00	0.00	146.00
............................AGAGAACGTTCGCTGTTGATG.......................................................................	21	1	64.00	0.00	0.00	0.00	64.00
...........................AAGAGAACGTTCGCTGTTGATGT......................................................................	23	1	45.00	0.00	0.00	0.00	45.00
.............................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	7.33	0.00	0.00	0.00	7.33
...........................AAGAGAACGTTCGCTGTTGATG.......................................................................	22	1	19.00	0.00	0.00	0.00	19.00
.............................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	5.67	0.00	0.00	0.00	5.67
.............................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	4.00	0.33	0.00	0.00	3.67
.............................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	4.00	0.00	0.00	0.00	4.00
.............................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	3.67	0.00	0.00	0.00	3.67
.............................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	3.00	0.00	0.00	0.00	3.00
............................AGAGAACGTTCGCTGTTGATGTT.....................................................................	23	1	8.00	0.00	0.00	0.00	8.00
.............................................................................TATCACAGTGACTGTTCTTTT......................	21	3	2.67	0.00	0.00	0.00	2.67
.............................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	2.67	0.00	0.00	0.00	2.67
.............................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	2.67	0.00	0.00	0.00	2.67
.............................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	2.33	0.00	0.00	0.00	2.33
.............................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	2.00	0.00	0.00	0.00	2.00
.............................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	2.00	1.67	0.00	0.00	0.33
.............................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	1	6.00	0.00	0.00	0.00	6.00
.............................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	2.00	0.00	0.00	0.00	2.00
............................AGAGAACGTTCGCTGTTGATGTAA....................................................................	24	1	6.00	0.00	0.00	0.00	6.00
.............................................................................TATCACAGTGGCTGGTGTT........................	19	3	2.00	0.00	0.00	0.00	2.00
.............................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
.............................................................................TATCACAGTGGCTGGTCTT........................	19	3	1.33	0.00	0.33	0.00	1.00
.............................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
.............................................................................TATCACAGTGGCTGTTGTTTTTTT...................	24	2	2.00	0.00	0.00	0.00	2.00
.............................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
.............................................................................TATCACAGTGGCCGGTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
.............................................................................TATCACAGTGGCTGGGCTTTTTT....................	23	1	3.00	0.00	0.00	0.00	3.00
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	1.00	0.67	0.00	0.00	0.33
.............................................................................TATAACAGTGGCTGTTCGT........................	19	3	1.00	0.00	0.00	0.00	1.00
.............................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	1.00	0.00	0.00	0.00	1.00
..........................GAAGAGAACGTTCGCTGTTGATG.......................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.............................................................................TATCACAGTGGCTGGTTTTTTTT....................	23	1	3.00	0.00	0.00	0.00	3.00
.............................................................................TATCACAGTGGCTGGTCGT........................	19	3	1.00	0.00	0.00	0.00	1.00
.............................................................................TATCACAGTGACTGTTCTTTTTC....................	23	3	1.00	0.00	0.00	0.00	1.00
.............................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	1.00	0.00	0.33	0.00	0.67

droGri2

A-C-----TCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATGATTCA----AATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTT	Size	Hit Count	Total Norm	V109 Male body
.............................................................................TATCACAGTGGCTGTTCTTTT......................	21	8	1.13	1.13
.............................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	8	0.63	0.63
.............................................................................TATCACAGTGGCTGTTCTTT.......................	20	8	0.25	0.25
.............................................................................TATCACAGTGGCTGGTCTTTT......................	21	8	0.13	0.13
............AAATTGTTGAAAGGGAAG..........................................................................................	18	2	0.50	0.50
.............................................................................TATCACTGTGGCTGTTCTTTTT.....................	22	8	0.13	0.13

Generated: 04/20/2012 at 05:29:54 EDT

dme-mir-6-3

chr2R:15548221-15548300 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup