dme-mir-6-3- 12- and 20-way alignments

dme-mir-6-3	chr2R:15548221-15548300 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 15548227-15548248
   star strand at position 15548270-15548292
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:15548206-15548315 -	AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTTGAAACTC----TCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droSim1	chr2R:14253641-14253750 -	AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTC----TCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droSec1	super_1:13062939-13063048 -	AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTC----TCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droYak2	chr2R:13624474-13624583 +	AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTC----TCTCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACAT
droEre2	scaffold_4845:9748460-9748569 -	AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTCGAAACTC----TCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGT
droAna3	scaffold_13266:9732107-9732212 +	AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT----ATTC----GCATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT
dp4	chr3:12676789-12676898 -	AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTTTT----GCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGA
droPer1	super_2:8906774-8906883 +	AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTTTC----GCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGA
droWil1	scaffold_180701:1650985-1651089 -	ATTTT-----TTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTATACCATTTTGTTTAACAA--TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC--
droVir3	scaffold_12875:4112942-4113048 +	CGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-CGACCTTT----GTACTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAAC--
droMoj3	scaffold_6496:20935943-20936052 -	TGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCGAATTCAT----TTAATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGT
droGri2	scaffold_15112:2107905-2108014 -	CACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTCATGATTC----AAATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTT

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:15548206-15548315 -	NA	AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droSim1	chr2R:14253641-14253750 -	1	AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droSec1	super_1:13062939-13063048 -	1	AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droYak2	chr2R:13624474-13624583 +	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCT----CTCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACAT
droEre2	scaffold_4845:9748460-9748569 -	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGT
droEug1	scf7180000409474:2397534-2397643 +	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droBia1	scf7180000302143:3059125-3059234 -	1	AAA-----TTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACTCT----CACAGTTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT
droTak1	scf7180000415384:84743-84852 +	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droEle1	scf7180000491201:2013284-2013393 -	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droRho1	scf7180000780066:74356-74465 +	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGT
droFic1	scf7180000454039:847346-847455 -	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATTCT----CACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGT
droKik1	scf7180000302679:88651-88761 -	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATTCA----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droAna3	scaffold_13266:9732107-9732212 +	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATTCG----CATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT
droBip1	scf7180000396427:875054-875159 +	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATTCG----CCTCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
dp4	chr3:12676789-12676898 -	2	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTTG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGA
droPer1	super_2:8906774-8906883 +	1	AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTCG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGA
droWil1	scaffold_180701:1650985-1651090 -	3	CAT-----TT----TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAA--TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC--
droVir3	scaffold_12875:4112942-4113050 +	1	CGC-----TCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTTTG----TACTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAACTT
droMoj3	scaffold_6496:20935943-20936057 -	1	AATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCATT----TAATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGT
droGri2	scaffold_15112:2107905-2108014 -	3	A-C-----TCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATGATTCA----AATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTT

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTTGAAACTC----TCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT

Size

Hit Count

Total Norm

droSim1

AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTC----TCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	2237.00	2.33	3.67	2.33	2228.67
.......................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	1354.33	1.00	3.67	3.00	1346.67
.......................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	959.00	1.00	1.00	0.67	956.33
.......................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	890.33	1.67	1.67	3.67	883.33
.......................................................................TATCACAGTGGCTGGTTTTTTTT....................	23	1	1321.00	1.00	1.00	1.00	1318.00
.......................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	329.67	0.00	0.00	1.33	328.33
.......................................................................TATCACAGTGGCTGGTCTTTTTTT...................	24	2	241.00	0.00	0.50	0.00	240.50
.......................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	131.33	3.00	0.00	0.33	128.00
.......................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	114.33	0.33	2.00	0.67	111.33
.......................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	3	44.00	0.00	0.00	0.00	44.00
.......................................................................TATCACAGTGGCTGGTTTTT.......................	20	3	31.00	1.00	0.33	0.00	29.67
.......................AGGGAACGGTTGCTGATGATGTA....................................................................	23	1	93.00	76.00	0.00	0.00	17.00
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	27.67	0.33	0.33	0.00	27.00
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	27.33	1.00	0.00	0.00	26.33
.......................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	26.67	1.00	0.33	0.00	25.33
.......................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	1	78.00	3.00	0.00	0.00	75.00
.......................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	25.33	0.00	0.00	0.00	25.33
.......................................................................TATCACAGTGGCTTTTCTTTTTG....................	23	3	18.00	0.00	0.00	0.00	18.00
.......................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	16.33	1.00	0.00	0.00	15.33
.......................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	13.00	3.00	0.00	0.00	10.00
.......................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	3	12.33	0.00	0.00	0.00	12.33
.......................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	11.00	0.00	0.00	0.00	11.00
.......................................................................TATCACATTGGCTGGTCTTTTT.....................	22	3	10.67	0.00	0.00	0.00	10.67
.......................................................................TATCACAGTGGCTGGTCTTTTTTG...................	24	2	10.00	0.00	0.00	0.00	10.00
.......................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	6.67	4.33	0.00	0.00	2.33
.......................................................................TATCACAGTGGCTGTTTTTTT......................	21	4	4.75	0.00	0.00	0.00	4.75
.......................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	6.33	4.00	0.00	0.00	2.33
.......................................................................TATCACAGTGGCTGGTCTT........................	19	3	5.67	0.67	0.00	0.00	5.00
........................................................................ATCACAGTGGCTGGTCTTTTT.....................	21	3	5.33	0.00	0.00	0.00	5.33
.......................AGGGAACGGTTGCTGATGATG......................................................................	21	1	16.00	13.00	0.00	0.00	3.00
.......................................................................TATCACAGTGGCTGTTTTTTTTT....................	23	3	5.33	0.00	0.00	0.00	5.33
.......................................................................TATCACAGTGGCTGGTATTTTTT....................	23	1	14.00	2.00	0.00	0.00	12.00
.......................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	3.25	0.00	0.00	0.00	3.25
.......................................................................TATCACAGTGGCTGGGCTTTTTT....................	23	1	13.00	3.00	0.00	0.00	10.00
.......................................................................TATCACAGTGGCTGGTCTTTTTTTT..................	25	1	13.00	0.00	0.00	0.00	13.00
.......................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	4.33	0.00	0.00	0.00	4.33
.......................AGGGAACGGTTGCTGATGATGT.....................................................................	22	1	13.00	12.00	0.00	0.00	1.00
.......................................................................TATCACAGCGGCTGGTCTTTTT.....................	22	3	4.00	0.00	0.00	0.00	4.00
.......................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	3.67	0.00	0.00	0.00	3.67
.......................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	3.67	2.00	0.00	0.00	1.67
.......................................................................TATCACAGTGGCCGTTCTTTTTG....................	23	3	3.33	0.00	0.00	0.00	3.33
.......................................................................TATCACAGTGACTGTTCTTTTTG....................	23	3	3.00	0.00	0.00	0.00	3.00
.......................................................................TATCACAGTGGCTGGTCT.........................	18	3	2.67	0.00	0.00	0.00	2.67
.......................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	2.67	0.67	0.00	0.00	2.00
.......................................................................TATCGCAGTGGCTGGTCTTTTT.....................	22	3	2.67	0.00	0.33	0.00	2.33
.......................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	3	2.67	2.00	0.00	0.00	0.67
.......................................................................TATCACAGTGGCTGTTTTTT.......................	20	4	2.00	0.00	0.00	0.00	2.00
.......................................................................TATCACAGTGGCTxTTCTTTT......................	20	3	2.67	0.00	0.33	0.00	2.33
.......................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	2.67	0.00	0.00	0.00	2.67
.......................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	3	2.33	0.00	0.00	0.00	2.33
.......................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	3	2.33	0.00	0.00	0.00	2.33
.......................................................................TATCACAGTGGCTGGGCTTTT......................	21	3	2.33	0.33	0.00	0.00	2.00
.......................................................................TATCACATTGGCTGTTCTTTT......................	21	3	2.33	0.00	0.00	0.00	2.33
.......................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	2.33	1.33	0.00	0.00	1.00
........................................................................ATCACAGTGGCTGGTCTTTTTT....................	22	3	2.00	0.00	0.00	0.00	2.00
.......................................................................TATCACAGTGACTGTTCTTTT......................	21	3	2.00	0.67	0.00	0.00	1.33
.......................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	2.00	1.67	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	3	2.00	0.33	0.00	0.00	1.67
.......................................................................TATCACAGTGGCTGGTATTTT......................	21	3	2.00	0.00	0.00	0.00	2.00
.......................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	2.00	0.00	0.00	0.00	2.00
........................................................................ATCACAGTGGCTGGTCTTTT......................	20	3	2.00	0.00	0.00	0.00	2.00
.......................................................................TATCACAGTGGCTCTTCTTTTTG....................	23	3	2.00	0.00	0.00	0.00	2.00
.......................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	1.25	0.25	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGGTCTTTTTTA...................	24	1	5.00	0.00	0.00	0.00	5.00
.......................................................................TACCACAGTGGCTGGTCTTTTT.....................	22	3	1.67	0.00	0.00	0.00	1.67
.........................................................................TCACAGTGGCTGGTCTTTTT.....................	20	3	1.67	0.00	0.00	0.00	1.67
.......................................................................TATCACATTGGCTGTTCTTTTTT....................	23	3	1.67	0.00	0.00	0.00	1.67
.......................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	1.67	1.33	0.00	0.00	0.33
.......................................................................TATCACACTGGCTGGTCTTTTT.....................	22	3	1.67	0.00	0.00	0.00	1.67
.......................................................................TATCACAGTGGCCGTTCTTTT......................	21	3	1.67	0.00	0.00	0.00	1.67
.......................................................................TATCACAGTGGCTGTTCTTTTTTT...................	24	3	1.67	0.00	0.00	0.00	1.67
.......................................................................TATCACGGTGGCTGTTCTTTTTT....................	23	3	1.33	1.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTGTT........................	19	3	1.33	1.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGTTGTTTTTTT...................	24	2	2.00	2.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTTC...................	24	1	4.00	0.00	0.00	0.00	4.00
.......................................................................TATCGCAGTGGCTGGTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
.......................................................................TATCACAGTGGCTGGTCTTTTTA....................	23	3	1.33	0.00	0.00	0.00	1.33
........................................................................ATCACAGTGGCTGGTTTTTTT.....................	21	3	1.33	0.00	0.00	0.00	1.33
.......................................................................TATCACACTGGCTGTTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
.......................................................................TATCACGGTGGCTGTTCTTTTTG....................	23	3	1.33	0.00	0.00	0.00	1.33
.......................................................................TATCACAGTGGCTGTTGTTTTTT....................	23	3	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
.......................................................................TATCACATTGGCTGGTCTTTT......................	21	3	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGTTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
.......................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGGTTTT........................	19	3	1.00	0.33	0.00	0.00	0.67
.......................................................................TATCACAGCGGCTGGTCTTTTTT....................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................TATCACAGTGGCTGGCCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
.......................................................................TACCACAGTGGCTGGTCTTTT......................	21	3	1.00	0.00	0.00	0.00	1.00
...........................................................................ACAGTGGCTGGTCTTTTT.....................	18	3	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	3	1.00	0.00	0.00	0.00	1.00
.......................AGGGAACGGTTGCTGATGAT.......................................................................	20	1	3.00	1.00	0.00	0.00	2.00
.......................................................................TATCACAGTGTCTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
.......................................................................TATCACAxTGGCTGTTCTTTTTG....................	22	3	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	1.00	1.00	0.00	0.00	0.00

droSec1

AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTC----TCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	26569.33	4.67	26307.33	257.33
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	7989.67	3.33	7940.33	46.00
.......................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	2352.67	0.33	2326.33	26.00
.......................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	1409.33	1.00	1396.67	11.67
.......................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	374.33	0.00	373.33	1.00
.......................................................................TATCACAGTGGCTGTTCTT........................	19	3	258.67	0.00	252.33	6.33
.......................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	165.33	0.33	164.67	0.33
.......................................................................TATCACAGTGGCTGTTCTTTTTA....................	23	3	125.67	0.00	122.67	3.00
...........................................................................ACAGTGGCTGTTCTTTTT.....................	18	3	112.00	0.00	111.33	0.67
.......................................................................TATCACAGTGGCTGTTCCTTTT.....................	22	4	77.75	0.00	76.75	1.00
.........................................................................TATCAGTGGCTGTTCTTTTT.....................	20	3	101.00	0.00	100.67	0.33
.......................AGGGAACGGTTGCTGATGATGTA....................................................................	23	1	248.00	2.00	242.00	4.00
.......................................................................TATCACAGTGGCTGTTCTCTTT.....................	22	3	80.00	0.33	78.67	1.00
.......................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	57.00	0.00	55.50	1.50
.......................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	3	71.67	0.00	71.00	0.67
.......................................................................TATTACAGTGGCTGTTCTTTTT.....................	22	3	69.33	0.00	69.33	0.00
.......................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	67.00	0.00	66.00	1.00
.......................................................................TATCACAGTGGCTGTTCT.........................	18	3	67.00	0.00	65.33	1.67
.......................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	59.00	0.00	58.00	1.00
.......................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	49.67	0.00	49.67	0.00
.......................................................................TATCGCAGTGGCTGTTCTTTTT.....................	22	3	48.33	0.00	47.67	0.67
........................................................................ATCACAGTGGCTGTTCTTTTT.....................	21	3	43.00	0.00	42.67	0.33
.......................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	3	42.00	0.00	41.67	0.33
.......................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	41.00	0.00	40.00	1.00
.......................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	40.67	0.00	40.00	0.67
.......................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	36.67	0.00	36.67	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTTGA...................	24	3	36.00	0.00	36.00	0.00
.......................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	3	35.00	0.00	35.00	0.00
.......................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	3	33.33	0.00	32.67	0.67
.......................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	3	32.33	0.00	31.67	0.67
.......................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	3	31.67	0.00	31.33	0.33
.......................................................................TATCATAGTGGCTGTTCTTTTT.....................	22	3	31.33	0.00	31.33	0.00
.......................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	23.00	0.00	22.75	0.25
.......................................................................TACCACAGTGGCTGTTCTTTTT.....................	22	3	29.33	0.00	28.67	0.67
.........................................................................TATCAGTGGCTGTTCTTTT......................	19	3	29.00	0.00	28.33	0.67
.......................................................................TATCACAGTGGCTGTTCTTTTC.....................	22	3	28.67	0.00	28.33	0.33
.......................................................................TATCACAGTCGCTGTTCTTTTT.....................	22	3	28.33	0.00	28.33	0.00
.......................................................................GATCACAGTGGCTGTTCTTTTT.....................	22	3	28.33	0.00	28.33	0.00
......................................................................CTATCACAGTGGCTGTTCTTTTT.....................	23	3	28.00	0.00	28.00	0.00
.......................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	26.33	0.00	26.33	0.00
.......................................................................TATCACAGTGGCTGATCTTTTT.....................	22	3	24.67	0.00	24.67	0.00
.......................................................................TATTACAGTGGCTGTTCTTTT......................	21	3	24.33	0.00	24.33	0.00
.......................................................................TATCACAGTGGCTGTTCCTTT......................	21	4	17.75	0.00	17.75	0.00
.......................................................................CATCACAGTGGCTGTTCTTTTT.....................	22	3	23.33	0.00	23.33	0.00
.......................................................................TATCACTGTGGCTGTTCTTTTT.....................	22	3	23.00	0.00	23.00	0.00
.......................................................................TATCACAGTGGCTxTTCTTTT......................	20	3	22.00	0.00	22.00	0.00
.......................................................................TATCACACTGGCTGTTCTTTTT.....................	22	3	21.67	0.00	21.67	0.00
.......................................................................TATCACAGTGGCTGTTTTTTT......................	21	4	16.25	0.00	16.00	0.25
.......................................................................TATCACAGTGTCTGTTCTTTTT.....................	22	3	21.33	0.00	20.33	1.00
.......................................................................TATCACAGTGGTTGTTCTTTT......................	21	3	21.00	0.00	21.00	0.00
.......................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	3	21.00	0.00	20.33	0.67
.......................................................................TATCACAGTGGCTCTTCTTTTT.....................	22	3	19.33	0.00	19.00	0.33
.......................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	19.33	0.00	19.33	0.00
.......................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	19.00	0.00	19.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTCTT.....................	22	3	18.67	0.00	18.67	0.00
.......................................................................TATCTCAGTGGCTGTTCTTTTT.....................	22	3	18.00	0.00	18.00	0.00
.......................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	17.00	0.00	17.00	0.00
.......................................................................TATCATAGTGGCTGTTCTTTT......................	21	3	17.00	0.00	17.00	0.00
.......................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	16.33	0.00	16.00	0.33
.........................................................................TCACAGTGGCTGTTCTTTTT.....................	20	3	16.33	0.00	16.00	0.33
.......................................................................TGTCACAGTGGCTGTTCTTTTT.....................	22	3	15.67	0.00	15.67	0.00
.......................................................................TATCACAGAGGCTGTTCTTTTT.....................	22	3	15.33	0.00	15.00	0.33
.......................................................................TATCGCAGTGGCTGTTCTTTT......................	21	3	15.33	0.00	15.33	0.00
.......................................................................TATCACAGTGGCTGTTCTTTCT.....................	22	3	14.33	0.00	14.33	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	3	14.00	0.00	13.67	0.33
.......................................................................TATCACAATGGCTGTTCTTTTT.....................	22	3	12.67	0.00	12.67	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	3	12.67	0.00	12.67	0.00
.......................................................................TATCACAGTGGCAGTTCTTTTT.....................	22	3	12.33	0.00	12.33	0.00
.......................AGGGAACGGTTGCTGATGATGT.....................................................................	22	1	35.00	0.00	35.00	0.00
.......................................................................TATCACAGTGGCCGTTCTTTT......................	21	3	11.33	0.00	11.00	0.33
.......................................................................TTTCACAGTGGCTGTTCTTTTT.....................	22	3	11.33	0.00	11.33	0.00
.......................................................................TATCACAGTGGCTATTCTTTTT.....................	22	3	11.33	0.00	11.33	0.00
...........................................................................ACAGTGGCTGTTCTTTTTG....................	19	3	11.00	0.00	11.00	0.00
.......................................................................TATCACAGTGGCTGTCCTTTT......................	21	3	10.67	0.00	10.33	0.33
.......................................................................TATCACAGTGGCTGTTCTTTTTC....................	23	3	10.67	0.00	10.67	0.00
.......................................................................TATCACAGTGGCTTTTCTTTT......................	21	3	10.33	0.00	10.33	0.00
.......................................................................TATCACAGTGGCTGTTCTCTTTG....................	23	3	10.33	0.00	10.33	0.00
.......................................................................TATCACAGCGGCTGTTCTTTT......................	21	3	10.00	0.00	10.00	0.00
...........................................................................ACAGTGGCTGGTCTTTTT.....................	18	3	10.00	0.00	10.00	0.00
........................................................................ATCACAGTGGCTGTTCTTTTTG....................	22	3	9.67	0.00	9.67	0.00
.......................................................................TATCACAGTGGCTGTACTTTTT.....................	22	3	9.67	0.00	9.67	0.00
.......................................................................TATCACCGTGGCTGTTCTTTTT.....................	22	3	9.00	0.00	8.67	0.33
.......................................................................TATCACATTGGCTGTTCTTTT......................	21	3	9.00	0.00	9.00	0.00
.......................................................................CATCACAGTGGCTGTTCTTTT......................	21	3	8.67	0.00	8.67	0.00
.......................................................................TATCACAGTxGCTGTTCTTTT......................	20	3	8.67	0.00	8.67	0.00
.......................................................................GATCACAGTGGCTGTTCTTTT......................	21	3	8.33	0.00	8.33	0.00
........................................................................TTCACAGTGGCTGTTCTTTTT.....................	21	3	8.33	0.00	8.33	0.00
.......................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	3	8.00	0.00	8.00	0.00
.......................................................................TACCACAGTGGCTGTTCTTTT......................	21	3	8.00	0.00	8.00	0.00
.......................................................................TATCACAGTGGCTGTTCTCTT......................	21	3	8.00	0.00	8.00	0.00
.......................................................................TATCACAGTGGTTGTTCTTTTTG....................	23	3	7.67	0.00	7.33	0.33
.......................................................................TATCACACTGGCTGTTCTTTT......................	21	3	7.67	0.00	7.67	0.00
......................................................................CTATCACAGTGGCTGTTCTTTT......................	22	3	7.67	0.00	7.67	0.00
.......................................................................TATCACAGTGCCTGTTCTTTT......................	21	3	7.67	0.00	7.67	0.00
.......................................................................TATCACAGTGGCTGTTCTTCT......................	21	3	7.67	0.00	7.67	0.00
.......................................................................TATCACAGTGGCxxTTCTTTT......................	19	3	7.67	0.00	7.67	0.00
.......................................................................TATCACAGTGGCTCTTCTTTT......................	21	3	7.33	0.00	7.33	0.00
.......................................................................TGTCACAGTGGCTGTTCTTTT......................	21	3	7.33	0.00	7.33	0.00
.......................................................................TATCACAGAGGCTGTTCTTTT......................	21	3	7.33	0.00	7.33	0.00
.......................................................................TCTCACAGTGGCTGTTCTTTTT.....................	22	3	7.33	0.00	7.33	0.00
.........................................................................TATCAGTGGCTGTTCTTT.......................	18	3	7.00	0.00	6.67	0.33

droYak2

AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTC----TCTCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACAT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................AGGGAACGGTTGCTGATGATGTA....................................................................	23	1	102.00	102.00	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	5.67	1.67	0.00	4.00	0.00	0.00
.......................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	5.67	5.67	0.00	0.00	0.00	0.00
.......................AGGGAACGGTTGCTGATGATGT.....................................................................	22	1	17.00	17.00	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	5.00	5.00	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	3.67	3.67	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	3.67	3.00	0.00	0.33	0.00	0.33
.......................AGGGAACGGTTGCTGATGATG......................................................................	21	1	9.00	8.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	3.00	0.33	0.00	2.67	0.00	0.00
.......................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	2.67	2.67	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	2.67	2.67	0.00	0.00	0.00	0.00
.......................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	2.00	2.00	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	1.67	1.67	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	1.67	0.67	0.00	0.00	0.33	0.67
.......................................................................TATCACAGTGACTGTTCTTTT......................	21	3	1.67	1.67	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	1.33	1.33	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	1.33	1.33	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCCTTTT.....................	22	3	1.33	1.33	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	3	1.33	1.33	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTTTT........................	19	3	1.33	1.33	0.00	0.00	0.00	0.00
.......................................................................TATCACGGTGGCTGGTCTTTTT.....................	22	3	1.33	1.33	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGGTGTTCTTTTT.....................	22	3	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	1.00	1.00	0.00	0.00	0.00	0.00
....................AGAAGGGAACGGTTGCTGATGAT.......................................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	1.00	0.67	0.00	0.00	0.00	0.33

droEre2

AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTCGAAACTC----TCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......................AGGGAACGGTGGCTGATGATGTA....................................................................	23	1	28.00	28.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	7.67	1.67	0.00	0.67	5.33
.......................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	6.00	4.00	0.00	2.00	0.00
.......................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	6.00	3.33	0.00	2.67	0.00
.......................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	3.00	2.67	0.00	0.33	0.00
.......................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	2.67	2.33	0.00	0.33	0.00
.......................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	2.67	1.67	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	2.00	0.67	0.00	1.33	0.00
.......................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	2.00	0.67	0.00	1.33	0.00
.......................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	2.00	1.00	0.00	1.00	0.00
.......................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	2.00	0.33	0.00	1.67	0.00
.......................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	1.67	1.00	0.00	0.67	0.00
.......................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	1.25	1.00	0.00	0.25	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTTTT..................	25	1	5.00	1.00	0.00	4.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	1.67	0.33	0.00	0.00	1.33
.......................................................................TATCACAGTGGCTGGTCTTTTTTTTT.................	26	1	4.00	1.00	0.00	3.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	1.33	0.67	0.00	0.67	0.00
.......................................................................TATCACAGTGGCTGGTTTTT.......................	20	3	1.00	1.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	1.00	0.33	0.00	0.67	0.00
.......................AGGGAACGGTGGCTGATGATGT.....................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.......................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	1.00	1.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	1	3.00	2.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.33	0.33
.......................AGGGAACGGTGGCTGATGATG......................................................................	21	1	3.00	3.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTC....................	23	3	1.00	1.00	0.00	0.00	0.00

droAna3

AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT----ATTC----GCATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.......................AGGGAACGGTCGCTGCTGATGTA....................................................................	23	1	21.00	0.00	1.00	0.00	20.00
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	4.00	0.67	2.67	0.00	0.67
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	3.67	2.33	1.33	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	3.33	2.67	0.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTT........................	19	3	1.67	0.67	1.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	1.00	0.33	0.00	0.00	0.67
.......................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	1.00	0.33	0.33	0.00	0.33
.......................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	0.67	0.00	0.67	0.00	0.00
.......................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.67
.......................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	0.50	0.00	0.00	0.00	0.50
.......................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.67
.......................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.67
.......................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	0.67	0.33	0.33	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTTTTT.................	26	1	2.00	0.00	0.00	0.00	2.00
.......................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTCT.........................	18	3	0.33	0.00	0.33	0.00	0.00
......................AAGGGAACGGGCGGTGC...........................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTTTTTT.................	26	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGTTGTTTTTTTT..................	25	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGTGCTTTT......................	21	3	0.33	0.33	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTTTTTT................	27	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACATTGTCTGTTCTTTT......................	21	3	0.33	0.33	0.00	0.00	0.00
.......................AGGGAACGGTCGCTGCTGATGT.....................................................................	22	1	1.00	0.00	0.00	0.00	1.00
....TGAAATTTGTTCCAAAAGA...........................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
.......................AGGGAACGGTCGCTGCTCATGTA....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.........ATTGTTGAAAAGGAAGGG.......................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTC......................	21	3	0.33	0.00	0.33	0.00	0.00
......................AAGGGAACGGTCTTTGC...........................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	0.33	0.00	0.33	0.00	0.00
.......................AGGGAACGGTCGCTGCTGATCAA....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	0.33	0.00	0.33	0.00	0.00
.......................................................................TATCACAGTCGCTGTTCTTTTTTT...................	24	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGGTCGTTTTT....................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGGGGCTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
.......................AGGGAACGGGCGCTGCTGTTGTA....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	3	0.33	0.00	0.33	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	3	0.33	0.33	0.00	0.00	0.00
.......................AGGGAACGGTCGCTGCCGATGTA....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................................................GATCACAGTGGCTGTGCT.........................	18	3	0.33	0.00	0.00	0.00	0.33
.......................AGGGAACGGTTGCTGCTGATGTA....................................................................	23	2	0.50	0.00	0.00	0.00	0.50
.......................................................................TATCACAGTGGCTGTTGTTTTTT....................	23	3	0.33	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	0.25	0.00	0.25	0.00	0.00
.......................................................................TATCACAGTGGCTGTTGTTTTTTTTT.................	26	1	1.00	0.00	0.00	0.00	1.00
.......................AGGGATCGGGCGCTGCT..........................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	1	1.00	0.00	0.00	0.00	1.00
......................AAGGGAACGGCCGGTGC...........................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTGTTTTTGT......................	21	3	0.33	0.00	0.00	0.33	0.00
.......................................................................TATAACAGTGGCTGTTCTTTT......................	21	3	0.33	0.00	0.33	0.00	0.00
.......................................................................TATCACAGTGACTGTTCTTTTTT....................	23	3	0.33	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTCTTTTTTT...................	24	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
.........ATTGTTGAAAGAGAAGGG.......................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.......................................................................TATCACAGCGGCTGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
......................AAGGGAACGGGAGCTG............................................................................	16	1	1.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
.....................CAAGGGAACGGGCGCTG............................................................................	17	1	1.00	0.00	0.00	1.00	0.00
........AATTGTTGAAAGAGAAGGG.......................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTGTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGTTCTTTTTCTT..................	25	1	1.00	0.00	0.00	0.00	1.00
......................AAGGGAACGGGAGCTGCT..........................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	0.33	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
......................AAGGGAACGGGCTCTGC...........................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTTTTGTTTT......................	21	3	0.33	0.00	0.00	0.00	0.33
.....................CAAGGGAACGGGCGCTGCT..........................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTTC...................	24	2	0.50	0.00	0.00	0.00	0.50
.......................................................................TATCACAGTGGTTGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	0.33	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGTCCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGATGTTCTTT.......................	20	3	0.33	0.33	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGGCTTTTTT....................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGCTCCTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
.......AAATTGTTCAAAGGGAAGG........................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGxTCTTTTTTTTT.................	25	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGTTCTTGTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGGCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTCTTCTT.....................	22	3	0.33	0.00	0.00	0.00	0.33

dp4

AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTTTT----GCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................AGGGAACGGTTGCTGCTGATGTA....................................................................	23	1	135.00	0.00	135.00	0.00	0.00
.......................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	4.00	0.00	4.00	0.00	0.00
.......................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	3.67	0.00	3.67	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	3.33	0.00	3.33	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	3.33	2.33	1.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	3.00	0.00	3.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	2.67	0.00	2.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	2.33	1.67	0.67	0.00	0.00
.......................AGGGAACGGTTGCTGCTGATG......................................................................	21	1	6.00	0.00	6.00	0.00	0.00
.......................AGGGAACGGTTGCTGCTGATGT.....................................................................	22	1	6.00	0.00	6.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	1.67	0.00	1.67	0.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	1.67	0.00	1.67	0.00	0.00
.......................................................................TATCACGGTGGCTGTTCTTTTTT....................	23	3	1.33	0.00	1.33	0.00	0.00
.......................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	1.33	0.00	1.33	0.00	0.00
.......................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	1.00	0.00	1.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	1.00	0.00	1.00	0.00	0.00
.......................AGGGAACGGTTGCTGCTGATTTA....................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTGTT........................	19	3	1.00	0.00	1.00	0.00	0.00
.......................AGGGAACGGTTGCTGCTGATGTAA...................................................................	24	1	3.00	0.00	3.00	0.00	0.00
.......................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	1.00	0.00	1.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGGCTTTTTT....................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................TATCACAGTAGCTGTTCTTT.......................	20	3	1.00	0.00	1.00	0.00	0.00

droPer1

AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTTTC----GCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	135.67	0.33	0.00	0.00	0.00	135.33
.......................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	98.00	0.00	0.00	0.00	0.00	98.00
.......................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	83.67	0.33	0.67	0.00	0.00	82.67
.......................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	25.67	0.00	0.00	0.00	0.00	25.67
.......................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	16.67	0.33	0.00	0.00	0.00	16.33
.......................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	11.33	0.00	0.00	0.00	0.00	11.33
.......................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	10.67	0.00	0.00	0.00	0.00	10.67
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	8.33	5.00	0.00	0.00	0.33	3.00
.......................................................................TATCACAGTGGCTGGTTTTTTTT....................	23	1	25.00	0.00	0.00	0.00	0.00	25.00
.......................AGGGAACGGTTGCTGCTGATGTA....................................................................	23	1	15.00	0.00	11.00	0.00	0.00	4.00
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	4.33	1.67	0.00	0.00	0.00	2.67
.......................................................................TATCACATTGGCTGGTCTTTTT.....................	22	3	3.67	0.00	0.00	0.00	0.00	3.67
.......................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	2.67	0.00	0.00	0.00	0.00	2.67
.......................................................................TATCACAGTGGCTGGTTTTT.......................	20	3	2.67	0.00	0.00	0.00	0.00	2.67
.......................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	2.67	0.00	1.67	0.00	0.33	0.67
.......................AGGGAACTGTTGCTGCTGATATA....................................................................	23	2	3.50	0.00	0.00	0.00	0.00	3.50
.......................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	2.33	0.33	0.00	0.00	0.00	2.00
.......................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	2.00	0.00	0.33	0.00	0.33	1.33
.......................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	1.25	0.50	0.00	0.00	0.00	0.75
.......................................................................TATCACAGTGGCTGGTCTT........................	19	3	1.67	0.00	0.33	0.00	0.00	1.33
.......................................................................TATCACAGTGGCTTTTCTTTTTG....................	23	3	1.33	0.00	0.00	0.00	0.00	1.33
.......................................................................TATCACAGTGGCTGGTCTTTTTTT...................	24	2	2.00	0.00	0.00	0.00	0.00	2.00
.......................AGGGAACGGTTGCTGCTGATG......................................................................	21	1	4.00	0.00	2.00	0.00	1.00	1.00
.......................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	1.33	0.00	1.33	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCT.........................	18	3	1.00	0.00	0.00	0.00	0.00	1.00
.......................AGGGAACGGTTGCTCCTGATGTA....................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
.............................CGGTTGCTGTTGATGTCG...................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	3	0.67	0.00	0.67	0.00	0.00	0.00
......................................................................CTATCACAGTGGCTGGTCTT........................	20	3	0.67	0.00	0.00	0.00	0.00	0.67
.......................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.00	0.67
.......................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	0.67	0.00	0.33	0.00	0.33	0.00
.......................AGGGAACGGTTGCTGCTGATGTAA...................................................................	24	1	2.00	0.00	2.00	0.00	0.00	0.00
.......................AGTGAACGGTTGCTGCTGATG......................................................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.00	0.67
...............................GTTGCTGCGGATGGAGTTC................................................................	19	1	2.00	2.00	0.00	0.00	0.00	0.00
......................................................................ATATCACAGTGGCTGGTCTTTT......................	22	3	0.67	0.00	0.00	0.00	0.00	0.67
.......................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	0.67	0.00	0.00	0.00	0.00	0.67
.......................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.00	0.67
.......................................................................TATCACAGTGGCTAATCTTTTT.....................	22	3	0.67	0.00	0.67	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	3	0.67	0.00	0.00	0.00	0.00	0.67
.......................................................................TATCACAGTGGCTGGTCTTTTTC....................	23	3	0.67	0.00	0.00	0.00	0.00	0.67
.......................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGGCTTT.......................	20	3	0.33	0.00	0.33	0.00	0.00	0.00
.......................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	0.25	0.00	0.25	0.00	0.00	0.00
........................................................................ATCACAGTGGCTGGTCTTTTTT....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGACTGTTCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTCTTTTTTTTT.................	26	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGAGCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33	0.00
.......................................................................TATCACAGTGGCTGGTATTTT......................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTCCT........................	19	3	0.33	0.00	0.33	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACGGTGGCTGGTCTTTTT.....................	22	3	0.33	0.00	0.33	0.00	0.00	0.00
.......................................................................TATCACATTGGCTGTTCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCGCAGTGGCTGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCCGTTCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGGGGCTGTTCTTTTTT....................	23	3	0.33	0.00	0.33	0.00	0.00	0.00
.......................................................................TATCACATTGGCTGTTTTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
......................AAGGGAACGATTGCTGGT..........................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................AGGGACCGGTTGGTGCTGATGTA....................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................ATCACAGTGGCTGGTCTTTTT.....................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................AGGGAACGGTTGCTGATGATGTA....................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGGCTTTTTT....................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................................................ATATCACAGTGGCTGGTTTTTT......................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	0.33	0.00	0.33	0.00	0.00	0.00
.......................................................................TACCACAGTGGCTGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................AGGGAACGGTTGCTGCTGATGTAGT..................................................................	25	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................AGGGAACGGTTGCTGCTGCTCTA....................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................TATCACAGTGGCTTTTCTT........................	19	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	3	0.33	0.00	0.33	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTTTTCT.........................	18	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
..............................TGTTGCTGCTGATGTTGT..................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................TATCACAGTGCCTGGTCTTT.......................	20	3	0.33	0.00	0.00	0.00	0.33	0.00
.......................................................................TATCACATTGACTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACxxTGGCTGTTCTTTTT.....................	20	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTCGTTTT.....................	22	3	0.33	0.00	0.33	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACGGTGGCTGTTCTTT.......................	20	3	0.33	0.00	0.33	0.00	0.00	0.00
.......................................................................TATCACAGCGGCTGGTCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................AGGGAACGGTTGCTGCTGATGT.....................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTATTTTTT....................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................................TATCACxxTGGCTGTTCTTTT......................	19	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGTTCTTC.......................	20	3	0.33	0.00	0.00	0.00	0.00	0.33
......................................................................ATATCACAGTGGCTGGTTTTTTT.....................	23	3	0.33	0.00	0.00	0.00	0.00	0.33
........................................................................ATCACAGTGGCTGGTCTTTTTG....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTGTT........................	19	3	0.33	0.00	0.33	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTxTTCTTTT......................	20	3	0.33	0.00	0.00	0.00	0.00	0.33
.......................................................................TATCACAGCGGCTGGTCTTT.......................	20	3	0.33	0.00	0.00	0.00	0.00	0.33

droWil1

ATTTT-----TTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTATACCATTTTGTTTAACAA--TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC--	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	34553.33	0.00	34551.67	1.67	0.00
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	8102.33	0.33	8101.33	0.67	0.00
.......................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	1149.00	1.67	1147.00	0.33	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTTA....................	23	3	1096.00	0.00	1096.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	575.33	0.00	570.67	4.00	0.67
.......................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	515.33	0.00	515.00	0.33	0.00
.......................................................................TATCACAGTGGCTGTTCTT........................	19	3	318.00	0.00	316.67	1.33	0.00
.......................AGGGAACGGTTGCTGTTGATGTA....................................................................	23	1	841.00	0.00	841.00	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	3	215.33	0.00	215.33	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	3	188.33	0.00	188.33	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCT.........................	18	3	127.33	0.00	127.33	0.00	0.00
.......................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	3	91.33	0.00	91.33	0.00	0.00
.......................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	3	89.00	0.00	88.67	0.33	0.00
.......................................................................TATCACAGTGGATGTTCTTTTT.....................	22	3	80.00	0.00	80.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	75.67	0.00	73.00	1.33	1.33
.......................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	72.00	0.00	72.00	0.00	0.00
.......................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	53.75	0.00	53.50	0.25	0.00
.......................................................................TATCACAGTGGCTGTTCCTTTT.....................	22	4	53.25	0.00	53.25	0.00	0.00
.......................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	48.50	0.00	48.50	0.00	0.00
.......................................................................TATCACAGTGTCTGTTCTTTTT.....................	22	3	64.00	0.00	64.00	0.00	0.00
.......................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	3	58.33	0.00	58.33	0.00	0.00
.......................................................................TATAACAGTGGCTGTTCTTTTT.....................	22	3	56.67	0.00	56.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	53.67	0.00	53.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTATTTTT.....................	22	3	50.33	0.00	50.33	0.00	0.00
...........................................................................ACAGTGGCTGTTCTTTTT.....................	18	3	44.67	0.00	44.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTCTTT.....................	22	3	42.67	0.00	42.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTAA....................	23	3	41.67	0.00	41.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTC.....................	22	3	40.00	0.00	40.00	0.00	0.00
.......................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	39.33	0.00	39.00	0.33	0.00
.......................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	37.67	0.00	37.67	0.00	0.00
.......................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	35.33	0.00	35.33	0.00	0.00
......................................................................CTATCACAGTGGCTGTTCTTTTT.....................	23	3	33.00	0.00	33.00	0.00	0.00
.......................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	3	32.67	0.00	32.67	0.00	0.00
.......................................................................TATCGCAGTGGCTGTTCTTTTT.....................	22	3	32.67	0.00	32.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTTC....................	23	3	32.33	0.00	32.33	0.00	0.00
.......................................................................TATCACAGTCGCTGTTCTTTTT.....................	22	3	30.33	0.00	30.00	0.33	0.00
.......................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	30.00	0.00	30.00	0.00	0.00
.......................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	29.33	0.00	29.33	0.00	0.00
.......................................................................TACCACAGTGGCTGTTCTTTTT.....................	22	3	29.00	0.00	29.00	0.00	0.00
.......................AGGGAACGGTTGCTGTTGATGT.....................................................................	22	1	85.00	0.00	85.00	0.00	0.00
.......................................................................CATCACAGTGGCTGTTCTTTTT.....................	22	3	27.67	0.00	27.67	0.00	0.00
.......................................................................TATCACACTGGCTGTTCTTTTT.....................	22	3	24.00	0.00	24.00	0.00	0.00
.......................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	3	23.33	0.00	23.33	0.00	0.00
.......................................................................TATCACAGTGGCTxTTCTTTT......................	20	3	23.00	0.00	22.67	0.33	0.00
........................................................................ATCACAGTGGCTGTTCTTTTT.....................	21	3	22.67	0.00	22.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTCTT.....................	22	3	21.67	0.00	21.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCCTTT......................	21	4	16.25	0.00	16.00	0.25	0.00
.......................................................................TATCACAGTGGCTGTTCTTTCT.....................	22	3	20.67	0.00	20.67	0.00	0.00
.......................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	3	20.33	0.00	20.33	0.00	0.00
.......................................................................TATCACAGTGGATGTTCTTTT......................	21	3	19.00	0.00	19.00	0.00	0.00
.......................................................................TATCACAGCGGCTGTTCTTTT......................	21	3	19.00	0.00	19.00	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTG.....................	22	3	18.67	0.00	18.67	0.00	0.00
.......................................................................TATCACAGTTGCTGTTCTTTT......................	21	4	13.50	0.00	13.50	0.00	0.00
.......................AGGGAACGGTTGCTGTTGATG......................................................................	21	1	54.00	0.00	54.00	0.00	0.00
.......................................................................TATTACAGTGGCTGTTCTTTTT.....................	22	3	17.67	0.00	17.67	0.00	0.00
.......................................................................TATCACAGTGTCTGTTCTTTT......................	21	3	16.33	0.00	16.33	0.00	0.00
.......................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	16.33	0.00	16.33	0.00	0.00
.......................................................................TATCACAGTGGCTGATCTTTTT.....................	22	3	16.00	0.00	16.00	0.00	0.00
.......................................................................TATCACAGTGGCTATTCTTTTT.....................	22	3	16.00	0.00	16.00	0.00	0.00
.......................................................................TATCATAGTGGCTGTTCTTTTT.....................	22	3	15.67	0.00	15.67	0.00	0.00
.......................................................................TGTCACAGTGGCTGTTCTTTTT.....................	22	3	15.67	0.00	15.67	0.00	0.00
.......................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	15.00	0.00	15.00	0.00	0.00
.......................................................................TATCACAGTGGCTCTTCTTTTT.....................	22	3	14.00	0.00	13.67	0.33	0.00
.......................................................................TATCACATTGGCTGTTCTTTT......................	21	3	14.00	0.00	14.00	0.00	0.00
.........................................................................TATCAGTGGCTGTTCTTTTT.....................	20	3	13.67	0.00	13.67	0.00	0.00
.......................................................................TATCACAATGGCTGTTCTTTTT.....................	22	3	13.33	0.00	13.33	0.00	0.00
.......................................................................TATCCCAGTGGCTGTTCTTTTT.....................	22	3	13.33	0.00	13.33	0.00	0.00
.......................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	13.00	0.00	13.00	0.00	0.00
.......................................................................TATCACAGTGGCTGTTATTTT......................	21	3	12.67	0.00	12.67	0.00	0.00
.......................................................................TATCACCGTGGCTGTTCTTTTT.....................	22	3	12.00	0.00	12.00	0.00	0.00
.......................................................................TATAACAGTGGCTGTTCTTTT......................	21	3	10.67	0.00	10.67	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTA....................	23	3	10.67	0.00	10.67	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	10.33	0.00	9.67	0.00	0.67
.......................................................................TATCACAGTGGCTTTTCTTTT......................	21	3	10.33	0.00	10.33	0.00	0.00
.......................AGGGAACGGTTGCTGTTGATGTAA...................................................................	24	1	31.00	0.00	31.00	0.00	0.00
......................................................................CTATCACAGTGGCTGTTCTTTT......................	22	3	10.33	0.00	10.33	0.00	0.00
.......................................................................TATCGCAGTGGCTGTTCTTTT......................	21	3	10.00	0.00	10.00	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTTTA...................	24	3	10.00	0.00	10.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	9.67	0.00	9.00	0.33	0.33
.......................................................................TATCACAGTGGCTGTTCTTTA......................	21	3	9.00	0.00	9.00	0.00	0.00
.......................................................................TCTCACAGTGGCTGTTCTTTTT.....................	22	3	9.00	0.00	9.00	0.00	0.00
......................................................................ATATCACAGTGGCTGTTCTTTT......................	22	3	8.67	0.00	8.67	0.00	0.00
.......................................................................GATCACAGTGGCTGTTCTTTTT.....................	22	3	8.67	0.00	8.67	0.00	0.00
.......................................................................TATCACAGTxGCTGTTCTTTT......................	20	3	8.33	0.00	8.33	0.00	0.00
.......................................................................TATCACAGTGGCCGTTCTTTT......................	21	3	8.33	0.00	8.33	0.00	0.00
.......................................................................TATCACAGTGGCTGTTTTTTT......................	21	4	6.00	0.00	6.00	0.00	0.00
.......................................................................TATCACAGAGGCTGTTCTTTTT.....................	22	3	8.00	0.00	8.00	0.00	0.00
.......................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	7.67	0.00	7.67	0.00	0.00
.......................................................................TACCACAGTGGCTGTTCTTTT......................	21	3	7.67	0.00	7.67	0.00	0.00
.......................................................................CATCACAGTGGCTGTTCTTTT......................	21	3	7.67	0.00	7.67	0.00	0.00
.......................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	7.33	0.00	4.67	1.33	1.33
.......................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	3	7.33	0.00	7.33	0.00	0.00
.......................................................................TAACACAGTGGCTGTTCTTTTT.....................	22	3	7.33	0.00	7.33	0.00	0.00
.......................................................................TATCAAAGTGGCTGTTCTTTTT.....................	22	3	7.00	0.00	7.00	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTTTTT...................	24	3	6.67	0.00	6.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTCTT......................	21	3	6.67	0.00	6.67	0.00	0.00
.......................................................................TATCACAGGGGCTGTTCTTTTT.....................	22	3	6.33	0.00	6.33	0.00	0.00
.........................................................................TCACAGTGGCTGTTCTTTTT.....................	20	3	6.33	0.00	6.33	0.00	0.00
.......................................................................TATCACAGTGCCTGTTCTTTT......................	21	3	6.00	0.00	5.67	0.33	0.00
.......................................................................TATTACAGTGGCTGTTCTTTT......................	21	3	6.00	0.00	6.00	0.00	0.00
..........................................................................CACAGTGGCTGTTCTTTTT.....................	19	3	6.00	0.00	6.00	0.00	0.00

droVir3

CGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-CGACCTTT----GTACTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAAC--	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................AGAGAACGTTCGCTGTTGATGTA....................................................................	23	1	147.00	0.00	0.00	147.00	0.00	0.00
.......................AGAGAACGTTCGCTGTTGATGT.....................................................................	22	1	40.00	0.00	0.00	40.00	0.00	0.00
.......................AGAGAACGTTCGCTGTTGATG......................................................................	21	1	37.00	1.00	0.00	36.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	3.00	0.00	0.00	2.00	0.67	0.33
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	2.67	2.00	0.00	0.67	0.00	0.00
.......................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	2.67	0.00	0.00	2.67	0.00	0.00
.......................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	2.00	0.33	0.00	1.67	0.00	0.00
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	1.67	1.33	0.00	0.33	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTTTT..................	25	1	5.00	0.00	0.00	4.00	0.00	1.00
.......................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	1.33	0.00	0.00	1.33	0.00	0.00
.......................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	1.33	0.00	0.00	1.33	0.00	0.00
.......................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	1.33	0.00	0.00	0.33	1.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	1.33	0.00	0.00	0.67	0.00	0.67
.......................AGAGAACGTTCGCTGTTGATGTT....................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
........AATTGTTGAAAAGGAAGGG.......................................................................................	19	1	3.00	3.00	0.00	0.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	1.00	0.00	0.00	0.67	0.00	0.33
.......................................................................TATCACAGTGGCTGGTCTTTTTTTTT.................	26	1	3.00	0.00	0.00	3.00	0.00	0.00
.......................AGAGAACGTTCGCTGTTGATTTA....................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
.......................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	1.00	0.00	0.00	1.00	0.00	0.00
.......................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	1.00	0.00	0.00	1.00	0.00	0.00

droMoj3

TGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCGAATTCAT----TTAATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................AGAGAACGTTCGCTGTTGATGT.....................................................................	22	1	204.00	0.00	0.00	0.00	204.00
.......................AGAGAACGTTCGCTGTTGATGTA....................................................................	23	1	146.00	0.00	0.00	0.00	146.00
.......................AGAGAACGTTCGCTGTTGATG......................................................................	21	1	64.00	0.00	0.00	0.00	64.00
......................AAGAGAACGTTCGCTGTTGATGT.....................................................................	23	1	45.00	0.00	0.00	0.00	45.00
.......................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	7.33	0.00	0.00	0.00	7.33
......................AAGAGAACGTTCGCTGTTGATG......................................................................	22	1	19.00	0.00	0.00	0.00	19.00
.......................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	5.67	0.00	0.00	0.00	5.67
.......................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	4.00	0.00	0.00	0.00	4.00
.......................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	4.00	0.33	0.00	0.00	3.67
.......................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	3.67	0.00	0.00	0.00	3.67
.......................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	3.00	0.00	0.00	0.00	3.00
.......................................................................TATCACAGTGACTGTTCTTTT......................	21	3	2.67	0.00	0.00	0.00	2.67
.......................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	2.67	0.00	0.00	0.00	2.67
.......................AGAGAACGTTCGCTGTTGATGTT....................................................................	23	1	8.00	0.00	0.00	0.00	8.00
.......................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	2.67	0.00	0.00	0.00	2.67
.......................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	2.33	0.00	0.00	0.00	2.33
.......................................................................TATCACAGTGGCTGGTGTT........................	19	3	2.00	0.00	0.00	0.00	2.00
.......................AGAGAACGTTCGCTGTTGATGTAA...................................................................	24	1	6.00	0.00	0.00	0.00	6.00
.......................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	2.00	0.00	0.00	0.00	2.00
.......................................................................TATCACAGTGGCTGGTGTTTTTT....................	23	1	6.00	0.00	0.00	0.00	6.00
.......................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	2.00	0.00	0.00	0.00	2.00
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	2.00	1.67	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGTTGTTTTTTT...................	24	2	2.00	0.00	0.00	0.00	2.00
.......................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
.......................................................................TATCACAGTGGCCGGTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
.......................................................................TATCACAGTGGCTGGTCTT........................	19	3	1.33	0.00	0.33	0.00	1.00
.......................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
.......................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
.......................................................................TATCACAGTGACTGTTCTTTTTC....................	23	3	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	1.00	0.00	0.33	0.00	0.67
.......................................................................TATCACAGTGGCTGGGCTTTTTT....................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................TATCACAGTGGCTGGTCGT........................	19	3	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	1.00	0.67	0.00	0.00	0.33
.......................................................................TATCACAGTGGCTGGTTTTTTTT....................	23	1	3.00	0.00	0.00	0.00	3.00
.....................GAAGAGAACGTTCGCTGTTGATG......................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................TATAACAGTGGCTGTTCGT........................	19	3	1.00	0.00	0.00	0.00	1.00
.......................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	1.00	0.00	0.00	0.00	1.00

droGri2

CACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTCATGATTC----AAATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTT	Size	Hit Count	Total Norm	V109 Male body
.......................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	3.00	3.00
.......................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	1.67	1.67
.......................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	0.67	0.67
.......................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	0.33	0.33
.......................................................................TATCACTGTGGCTGTTCTTTTT.....................	22	3	0.33	0.33
.......AAATTGTTGAAAGGGAAG.........................................................................................	18	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image