dme-mir-4969- Best orthologs

dme-mir-4969	chr3R:17624235-17624393 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 17624350-17624373
   star strand at position 17624257-17624278
   mutations
   read mismatches

Notes: droTak1 has only the miR region of the sequence missing; the other regions look very confident

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3R:17624220-17624408 -		1	TATATATATGTTTTTGTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCT---------GCCATTGTTTGGTT-GATAAGGGAGCCTGGCGC----------------------------------------------------------------------ACTATTACCTGGCTCTCTG----------------------------------AAACGAGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCGAT---GCGAC-------------------------ATCATCATAATAATCATCGCCTTT
droSim1	chr3R:17429869-17430050 -	LASTZ	1	TGTTTT--------TGTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCA---------GCCATTGTTTGGTT-GATAAGGGAGCCTGGCGC----------------------------------------------------------------------ACTATTACCTGGCTCTCTG----------------------------------AAACGAGAGCCCA---------------------CCTGTAAATCAATACCACCCCGCCGAA---GCGAC-------------------------ATCATCATAATAATCATCGCCTGC
droSec1	super_0:17996591-17996767 -	LASTZ	1	TATATATATGTTTTTATATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCA---------GCCATTGTTTGGTT-GATAAGGAAGCCTGGCGC----------------------------------------------------------------------ACTATTACCTGGCTCTCTG----------------------------------AAACGAGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCGAA---GCGAC-------------------------A------------TCATCGCCTTT
droYak2	chr3R:18444204-18444378 -	LASTZ	1	---------------GTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCA---------GCCATTGTTTGGCT-GATAAGGGAGCCTGGCGC----------------------------------------------------------------------ACTATTACCTGGCCCTCTG----------------------------------AAACGAGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCGAA---CCGAC-------------------------ATCATCATAATAATCATCGCCAGC
droEre2	scaffold_4820:10462895-10463063 +	LASTZ	1	T--------------GTATGAATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCA---------GCCATTGTTTGGCT-GATAAGGGAGCCTGGCGC----------------------------------------------------------------------ACTATTACCTGGCCCTGTG----------------------------------AAACGAGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCGAA---CCGAC-------------------------ATCATCATAGTAATCAT-------
droEug1	scf7180000409490:922102-922283 -	LASTZ	5	T-------------TGTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCC--------TGCTATTGTTCGGTT-GATAAGGGAGCCTGGC-----------------------------------------------------------------------AACTATTACCTGGCGC--TG----------------------------------AAACGGGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCG---------CATCAACATCATCGAACCACACCGACATCATCATAATA------------
droBia1	scf7180000302402:6490942-6491130 +	LASTZ	5	TTTATT--------TGTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCC--------TGCCATTGTTCGGCC-GATAAGGGAGCCTGCC-----------------------------------------------------------------------AACTATTACCTGGCGC--TG----------------------------------AAACGGGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCG---------CATCAGCA----------GCAACGACACCATCATAATAATCACCGTCATC
droTak1	scf7180000415711:1522484-1522611 +	LASTZ	5	T-------------TGTATGGATTTTTCGGCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCATTGTTCGGCT-GATAAGGGAGCCTGGC-----------------------------------------------------------------------AACTATTACCTGGCGC--TG----------------------------------AAACGGGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCG---------CATCA-------------------------GCATCAACATCACCG-----
droEle1	scf7180000491212:2052035-2052195 -	LASTZ	5	AT---ATATATTTTTGTATGGATTATTCGGCGTGGC-----------------AGTAAATTGAATGA------------------------------------------CGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCT---------GCCATTGTTCGCCT-GATAAGGGAGCCGGGCCA----------------------------------------------------------------------ACTATTACCTGGCGCGCTG----------------------------------AAACGGGAGCCCA---------------------CCTGTCAATCAATACCACACCGCCG---------CATCA---------------------------------------------
droRho1	scf7180000767859:662-810 +	LASTZ	5	TT------------TGTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------CGAGCGGG----------------AG--------------------------------------------------------------------------------------------------GATATCGCT---------GCCATTGTTCGGCT-GATAAGGGAGCCGGGC-----------------------------------------------------------------------AACTATTACCTGGCGC--TG----------------------------------AAACGGGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCG---------CATCA---------------------------------------------
droFic1	scf7180000454106:760656-760852 -	LASTZ	0	C-------------TGTATGGATTTTTCGGCGTGGC-------GT--------GGTAAATTGAATGATGAGTGGGTA--------------------------------TG--GGAGTGGGAGTGGCAGTGGGGG--------------------------------------------------------------------------------------------------GATGTCGCA---------GCCATTGTTCGGCT-GATAAGGGAGCCGGGC-------------------------------------------------------------------AGGCAACTATTACCTGCCGC--TG----------------------------------GAACGGGAGTCCG---------------------CCTGTCAATCAATACCACCCCGCGG---------CATCA-------------------------TCGCACC-GACATCATCGTC
droKik1	scf7180000302344:1257937-1258077 -	LASTZ	0	TATATATATACTAATGTATATA--------TTTA--------------------------------G------------------------------------------CCAACAGG----------------GGGTTAACTTTCTTAT-------CGATGG-TTTTCGAGCATTTAAAA-----------------------------------------------------TTGGTTGCT-----------GATTGCTGTCTT-CAAAATAAAGCCCAGCTT----------------------------------------------------------------------AGGTTTAACTTGGTCTAAG------------------------------------------AGCCA-----------------------------------------------------------------------------------------------------CCCT
droAna3	scaffold_13417:705028-705198 +	LASTZ	0	TGTATATGT--------GTGGGTGTAGAGGTGTGTA-----------------GGTGTGCAGGTGTA------------------------------------------CGGTTGTG----------------TG--------------------------------------------------------------------------------------------------TGTGTGGCATTCGTTGCTACTTATGTTT----AAGCTTCGTATTTAAG-------------------------------------------------------------------------------------------------------CTTTTTGCACGATTTCCTCTAACAAATGGATTTTCA---------------------CTTGTTG----------CCCAGCCAGACGAACGAA-------------------------GCCATCACAAAAAT----------
droBip1	scf7180000396708:224669-224886 +	LASTZ	0	TT-----------------------CTCGGCGGGATACGGCCTCT--------CGTAAATTGAATGA------------------------------------------TGAGCAGA----------------AGGGTGGGGTTTGGGT-------GGGTGGACGGTCTGGCATGACAAT-----------------------------------------------------GATGTCGCC--------TGCCATTGTTTGGGA-GATAAGGGACCCAGGGTC-----------------------------------------------------------------TGGGAACTATTACCTGGTCGGGTG-----------------------------GGGAGAAACGAGATCCTG--------GCGGAGTCGGGAGCCTGTCAATCAATGGGATGCCACC------------------------------------------------GCCGCCGCCAGT
dp4	chr4_group3:1192892-1193069 -	LASTZ	0	TATATG--------------GCCTATCCAGCAGGAA-------TTTATCCAGCG--------GATGGTAGCTAGAGA--------------------------------TG--CAGTTGG-------------AG--------------------------------------------------------------------------------------------------GGGGGC------------ACCATAGTTTGGAG-TAGCCAAATGCCAGGCGA-----------------------------------------------------------TAAGG------CATGAAA------AA--TA----------------------------------CAACTAATAAACATAAACCAG-------------TCTTCTTTTAAAAGCTGCT---------------C-------------------------ATCATCATCATCATCATGATCATC
droPer1	super_7:2291330-2291534 -	LASTZ	0	CATAAAAGGGTCTGAGTATC--------TGAG--------------------------------CGT----------CTGGGTGGAACCTC---TGTG----------CTG--CTAA----------------TG---------------------------------------------TTAGCTGATCCCTCTCCTCCCTCCCACTCGGTCCCTGCCCCC----------------------------------------GCT-C-CCTTGGTGGCTGTTGC----------------------------------------------------------------------ACTTTCCCCCGGGGCTCTGGAGTGTGCACACTTTTGGCATAATA----CAACAAAATTGATT---------------------------------------------TGCAG--------CA-------------------------TGCATCATTATCAACATCGTCGTT
droWil1	scaffold_181089:335812-335995 +	LASTZ	0	TTTTTTGAAATGTTTGTA--------AATGTGTGTG-----------------TGTTTGTGTGTGAA------------------------------------------GAAGAAT--------------G--TG-------------TGTATGTG------------------------CTGACTAGTT----------------------------CAATAATGCCCAGAGAATGTTA-------------------------------------------C----------------------------------------------------------------------AAGTTTAATGGAAGTTTTCA---------------------------------AATAGAAAAGCTA---------------------AAAGGAATTTAATTTTAGACATCAGTT---TCGAA-----------------GC------ATCGGCATCACAATCATCCCCATT
droVir3	scaffold_12963:15197471-15197651 +	LASTZ	0	TATATATATAGATATATATATA--------TATATA-----------------TGCT--GGGTTATA-----------------------------------------TGA--CTTT---------------------------------------------------------------------------------------------------------------------TGG-----------------------GTGCT-GATAAGAGG--CGTTCAG---------------CTCA-------GTGCCAGAGCCCAGCGGCTAATTGACAGCCCCACGGGCCATG--CGGTTAA------AT--TA----------------------------------AAACGAAAAATCA---------------------TTTGCCAGC-AGCA-------------------AC------AGCAGCA-GCAGCAGCGGCAGCAGC-----------------A
droMoj3	scaffold_6496:7093711-7093898 -	LASTZ	0	TAGCAACTCGTTTCTGTTGC--------TGTA-------------------------TGTGTAGCTG-----------------TAGCTGTATCTGTAGCTGTATCTG-TGGCTGT--------------A--TC-------------TGTATCTG------------------------GCAGCTGG------------------------------CAGCAGTAGCTGGTAGCTGCTG---------CTGGCTCT-------------------------------------------------------------------------------------------------GTTGCTGCCAGAGTATCTG---------TATCTGTGGCGCGTCA----T----------------------------------------TGTTGT----------------GCG---TTGCC-------------------------GTTGCCATCGTAACCAACGCCGTC
droGri2	scaffold_15126:1496468-1496644 -	LASTZ	0	TACATCCACATCGCTGCT--------TCGGCTTATG-------------TTGTGGTAAGTCATTAGA------------------------------------------TG--CAGA----------------TG--------------------------------------------------------------------------------------------------ATTGGCGTC---------ATCATCGCCTGCTTCCACATCATAGTCAAGGGTATTCTTTTCTGCCGTCTCAATGAGCG---CTAGCG-------------------C---------------CGATGAG-------------------------------ATATCA----A----------------------------------------CGA--------GGTGCT---------------C-------------------------TTCATCATCATCATCATCGTCATC

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	TATATATATGTTTTTGTATGGATTTTTCGGCGTGGCGGTAAATTGAATGATGAGTGGGAGGATGTCGC-TGCCATTGTTTGGTTGATAAGGGAGCCTGGCGCACTATTACCTGGCTCTCTGAAACGAGAGCCCACCTGTCAATCAATACCACCCCGCCGAT---------GCGAC-----------ATCATCATAATAATCATCGCCTTT
droSim1	T--------GTTTTTGTATGGATTTTTCGGCGTGGCGGTAAATTGAATGATGAGTGGGAGGATGTCGC-AGCCATTGTTTGGTTGATAAGGGAGCCTGGCGCACTATTACCTGGCTCTCTGAAACGAGAGCCCACCTGTAAATCAATACCACCCCGCCGAA---------GCGAC-----------ATCATCATAATAATCATCGCCTGC
droSec1	TATATATATGTTTTTATATGGATTTTTCGGCGTGGCGGTAAATTGAATGATGAGTGGGAGGATGTCGC-AGCCATTGTTTGGTTGATAAGGAAGCCTGGCGCACTATTACCTGGCTCTCTGAAACGAGAGCCCACCTGTCAATCAATACCACCCCGCCGAA---------GCGAC-----------ATC------------ATCGCCTTT
droYak2	---------------GTATGGATTTTTCGGCGTGGCGGTAAATTGAATGATGAGTGGGAGGATGTCGC-AGCCATTGTTTGGCTGATAAGGGAGCCTGGCGCACTATTACCTGGCCCTCTGAAACGAGAGCCCACCTGTCAATCAATACCACCCCGCCGAA---------CCGAC-----------ATCATCATAATAATCATCGCCAGC
droEre2	T--------------GTATGAATTTTTCGGCGTGGCGGTAAATTGAATGATGAGTGGGAGGATGTCGC-AGCCATTGTTTGGCTGATAAGGGAGCCTGGCGCACTATTACCTGGCCCTGTGAAACGAGAGCCCACCTGTCAATCAATACCACCCCGCCGAA---------CCGAC-----------ATCATCATAGTAATCAT-------
droEug1	T-------------TGTATGGATTTTTCGGCGTGGCGGTAAATTGAATGATGAGTGGGAGGATGTCGCCTGCTATTGTTCGGTTGATAAGGGAGCCTGGCA-ACTATTACCTGGCGC--TGAAACGGGAGCCCACCTGTCAATCAATACCACCCCGCCGCATCAACATCATCGA-ACCACACCGACATCATCATAATA------------
droBia1	TTTA--------TTTGTATGGATTTTTCGGCGTGGCGGTAAATTGAATGATGAGTGGGAGGATGTCGCCTGCCATTGTTCGGCCGATAAGGGAGCCTGCCA-ACTATTACCTGGCGC--TGAAACGGGAGCCCACCTGTCAATCAATACCACCCCGCCGCATCAGCAGCAACGAC-----------ACCATCATAATAATCACCGTCATC
droTak1	T-------------TGTATGGATTTTTCGGCGT------------------------------------TGCCATTGTTCGGCTGATAAGGGAGCCTGGCA-ACTATTACCTGGCGC--TGAAACGGGAGCCCACCTGTCAATCAATACCACCCCGCCGCATCA---------GC-----------AT------CAACATCACCG-----
droEle1	---ATATATATTTTTGTATGGATTATTCGGCGTGGCAGTAAATTGAATGACGAGTGGGAGGATGTCGC-TGCCATTGTTCGCCTGATAAGGGAGCCGGGCCAACTATTACCTGGCGCGCTGAAACGGGAGCCCACCTGTCAATCAATACCACACCGCCGCATCA----------------------------------------------
droRho1	T------------TTGTATGGATTTTTCGGCGTGGCGGTAAATTGAATGACGAGCGGGAGGATATCGC-TGCCATTGTTCGGCTGATAAGGGAGCCGGGCA-ACTATTACCTGGCGC--TGAAACGGGAGCCCACCTGTCAATCAATACCACCCCGCCGCATCA----------------------------------------------

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

TGTTTT--------TGTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCA---------GCCATTGTTTGGTT-GATAAGGGAGCCTGGCGC----------------------------------------------------------------------ACTATTACCTGGCTCTCTG----------------------------------AAACGAGAGCCCA---------------------CCTGTAAATCAATACCACCCCGCCGAA---GCGAC-------------------------ATCATCATAATAATCATCGCCTGC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGGGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
...................................C-----------------GGTAAATCGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00

droSec1

TATATATATGTTTTTATATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCA---------GCCATTGTTTGGTT-GATAAGGAAGCCTGGCGC----------------------------------------------------------------------ACTATTACCTGGCTCTCTG----------------------------------AAACGAGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCGAA---GCGAC-------------------------A------------TCATCGCCTTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	198.00	12.00	9.00	177.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	138.00	3.00	122.00	13.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	52.00	7.00	12.00	33.00
.....................................................GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	12.00	4.00	4.00	4.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	10.00	0.00	2.00	8.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	8.00	0.00	0.00	8.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AT--------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................	25	1	4.00	0.00	1.00	3.00
...................GGATTTTTCGGCGTGGC-----------------GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	1.00	3.00	0.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------------------CCTGTCAATCAATACCACC.................................................................	22	1	4.00	0.00	4.00	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------T.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	2.00	0.00	1.00
.....................................................GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	1.00	0.00	2.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAG............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	0.00	0.00	3.00
...................................C-----------------GGTAAATTGAGTGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	1.00	1.00	0.00
...................................T-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	0.00	2.00	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGA----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	0.00	0.00	2.00
......................................................GTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	0.00	2.00	0.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------------------CCTGTCAATCAATACCACT.................................................................	22	1	2.00	0.00	2.00	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGT----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	0.00	1.00	1.00
..................................GC-----------------GGTAAATTGAATGA------------------------------------------TGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00
...................................C-----------------GTTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00
.....................................................GGTAAATTGAACGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00
.....................................................CGTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
.......................................................TAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------C.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGCGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00
........................................................AAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00
..............................................................................................................................................................................................................................................................ATTGTTTGGTT-GATAAGGAAGCCTG.....................................................................................................................................................................................................................................................	25	1	1.00	0.00	1.00	0.00
...................................A-----------------GGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
...................................C-----------------GGTACATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGATTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1.00	0.00	0.00
................................TGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1.00	0.00	0.00
...................................C-----------------GGTAAAATGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
........................................................AAATTGAATGA------------------------------------------TGAGTGGG----------------T.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00
...................................C-----------------GGTAAATTAAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
.....................................................GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------C.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	0.00	1.00	0.00
...................................C-----------------GTTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TTAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAATGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGATTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00
...................................C-----------------GGTAACTTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00
.....................................................CGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGCGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00
.......................................................TAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------TC--------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00
...................................C-----------------GGTAAATTGAATAA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	0.00	1.00	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
...................................T-----------------GGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
............TTTATATGGATTTTTCGGCGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00
...............................................................................................................................................................................................................................................................TGGTTTGCTT-GATAAGGA...........................................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGGGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00
...........................................................TTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATG................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
...................................C-----------------TGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00

droYak2

---------------GTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCA---------GCCATTGTTTGGCT-GATAAGGGAGCCTGGCGC----------------------------------------------------------------------ACTATTACCTGGCCCTCTG----------------------------------AAACGAGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCGAA---CCGAC-------------------------ATCATCATAATAATCATCGCCAGC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	128.33	2.67	13.00	41.00	71.67	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	22	3	128.33	2.67	13.00	41.00	71.67	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	23	3	107.33	7.00	23.67	28.00	0.00	48.67
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	3	107.33	7.00	23.67	28.00	0.00	48.67
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	3	56.67	0.00	5.33	24.00	27.33	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	24	3	56.67	0.00	5.33	24.00	27.33	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	20	3	47.33	0.00	2.67	4.33	18.33	22.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	47.33	0.00	2.67	4.33	18.33	22.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAG............................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	13.67	0.00	1.33	1.33	5.00	6.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	19	3	13.67	0.00	1.33	1.33	5.00	6.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------------------CCTGTCAATCAATACCACC.................................................................	22	3	13.00	11.00	0.00	0.00	0.00	2.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	24	3	10.33	0.00	1.33	0.00	6.00	3.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------T.......................................................................................................................................................................................................................................................................................................................................................................................................	24	3	10.33	0.00	1.33	0.00	6.00	3.00
.....................................................GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	23	3	8.33	1.00	0.33	4.00	3.00	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	21	3	5.33	0.33	0.00	0.33	3.67	1.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	5.33	0.33	0.00	0.33	3.67	1.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	24	3	4.00	0.00	0.00	0.00	0.33	3.67
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------G.......................................................................................................................................................................................................................................................................................................................................................................................................	24	3	4.00	0.00	0.00	0.00	0.33	3.67
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	23	3	2.67	0.00	0.67	0.00	2.00	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGTG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	3	2.67	0.00	0.67	0.00	2.00	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	24	3	2.33	0.67	0.00	0.00	1.00	0.67
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------C.......................................................................................................................................................................................................................................................................................................................................................................................................	24	3	2.33	0.67	0.00	0.00	1.00	0.67
......................................................GTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	22	3	2.00	0.33	0.00	1.00	0.67	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	22	3	2.00	0.00	0.00	0.33	1.67	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	2.00	0.00	0.00	0.33	1.67	0.00
...................................C-----------------GGTAAATTGACTGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	3	1.67	0.00	0.00	0.00	1.67	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	22	3	1.67	0.00	0.00	0.00	1.67	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	23	3	1.67	0.00	0.33	0.00	1.33	0.00
...................................C-----------------GGCAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	1.67	0.00	0.00	0.00	1.67	0.00
...................................C-----------------GGCAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	3	1.67	0.00	0.33	0.00	1.33	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	23	3	1.67	0.00	0.00	0.00	1.67	0.00
.....................................................GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	22	3	1.67	0.00	0.33	0.00	1.33	0.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGATTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	3	1.33	0.00	0.00	0.00	1.33	0.00
..................................GC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	1.33	0.00	0.00	0.00	0.00	1.33
.......................................................TAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	21	3	1.33	0.00	0.00	1.33	0.00	0.00
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC	23	3	1.33	0.00	0.00	0.00	0.00	1.33
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	23	3	1.33	0.00	0.00	0.00	1.33	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	22	3	1.00	0.00	0.00	0.00	0.67	0.33
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	25	3	1.00	0.33	0.00	0.00	0.00	0.67
...................................C-----------------GGGAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	1.00	0.00	0.00	0.00	0.67	0.33
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AT--------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................	25	3	1.00	0.33	0.00	0.00	0.00	0.67
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	1.00	0.00	0.00	0.00	0.00	1.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	23	3	1.00	0.33	0.00	0.00	0.67	0.00
...................................C-----------------GGTAAATTGAGTGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	3	1.00	0.33	0.00	0.00	0.67	0.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------------------CCTGTCAATCAATACCACT.................................................................	22	3	1.00	1.00	0.00	0.00	0.00	0.00
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C	20	3	1.00	0.00	0.00	0.00	0.00	1.00

droEre2

T--------------GTATGAATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCA---------GCCATTGTTTGGCT-GATAAGGGAGCCTGGCGC----------------------------------------------------------------------ACTATTACCTGGCCCTGTG----------------------------------AAACGAGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCGAA---CCGAC-------------------------ATCATCATAGTAATCAT-------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	9588.00	11.00	217.00	0.00	9360.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5037.00	38.00	326.00	0.00	4673.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2136.00	143.00	105.00	0.00	1888.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1364.00	5.00	41.00	0.00	1318.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1225.00	0.00	48.00	0.00	1177.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAG............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	616.00	0.00	17.00	0.00	599.00
.....................................................GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	246.00	5.00	7.00	0.00	234.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------T.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	150.00	0.00	4.00	0.00	146.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	127.00	0.00	8.00	0.00	119.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTTGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	110.00	0.00	1.00	0.00	109.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TTAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	101.00	0.00	0.00	0.00	101.00
...................................A-----------------GGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	100.00	0.00	0.00	0.00	100.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	90.00	0.00	0.00	0.00	90.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	85.00	0.00	4.00	0.00	81.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGT----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	78.00	0.00	4.00	0.00	74.00
...................................C-----------------TGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	78.00	0.00	0.00	0.00	78.00
.....................................................GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	76.00	0.00	6.00	0.00	70.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------------------CCTGTCAATCAATACCACC.................................................................	22	1	67.00	16.00	2.00	0.00	49.00
.....................................................GGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	62.00	0.00	2.00	0.00	60.00
...................................C-----------------GGTAAATTTAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	59.00	0.00	0.00	0.00	59.00
...................................C-----------------GGTAAATTGAATTA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	56.00	0.00	0.00	0.00	56.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTTGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	54.00	3.00	0.00	0.00	51.00
...................................C-----------------TGTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	48.00	0.00	0.00	0.00	48.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TTAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	48.00	1.00	0.00	0.00	47.00
...................................A-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	45.00	0.00	0.00	0.00	45.00
...................................C-----------------GTTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	44.00	0.00	0.00	0.00	44.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGA----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	44.00	0.00	1.00	0.00	43.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGC----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	40.00	0.00	2.00	0.00	38.00
..................................GC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	35.00	0.00	2.00	0.00	33.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AT--------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................	25	1	35.00	0.00	2.00	0.00	33.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGATTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	34.00	0.00	4.00	0.00	30.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGTG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	32.00	6.00	3.00	0.00	23.00
...................................C-----------------GTTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	31.00	0.00	1.00	0.00	30.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGATTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	31.00	0.00	1.00	0.00	30.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGTG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	29.00	1.00	10.00	0.00	18.00
...................................C-----------------GGCAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	28.00	0.00	0.00	0.00	28.00
...................................C-----------------GGTAAATTTAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	27.00	0.00	0.00	0.00	27.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGT----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	26.00	3.00	0.00	0.00	23.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TTAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	25.00	2.00	1.00	0.00	22.00
...................................C-----------------TGTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	24.00	0.00	0.00	0.00	24.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGC----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	24.00	0.00	0.00	0.00	24.00
......................................................GTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	20.00	0.00	1.00	0.00	19.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TTAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	20.00	0.00	0.00	0.00	20.00
...................................C-----------------GGTAAATTAAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	19.00	0.00	0.00	0.00	19.00
......................................................GTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	19.00	0.00	0.00	0.00	19.00
......................................................GTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	19.00	0.00	1.00	0.00	18.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AA--------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................	25	1	17.00	0.00	1.00	0.00	16.00
...................................A-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	17.00	0.00	0.00	0.00	17.00
...................................A-----------------GGTAAATTGAATGA------------------------------------------TGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	17.00	0.00	0.00	0.00	17.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------------------CCTGTCAATCAATACCAC..................................................................	21	1	17.00	1.00	2.00	0.00	14.00
...................................C-----------------GATAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	17.00	0.00	0.00	0.00	17.00
...................................T-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	16.00	0.00	0.00	0.00	16.00
...................................C-----------------GGTAAATTTAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	16.00	1.00	0.00	0.00	15.00
...................................T-----------------GGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	16.00	0.00	2.00	0.00	14.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------C.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	16.00	2.00	3.00	0.00	11.00
...................................C-----------------GGTAAATTGAATTA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	15.00	0.00	0.00	0.00	15.00
...................................C-----------------GGTAAATTTAATGA------------------------------------------TGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	14.00	0.00	0.00	0.00	14.00
.......................................................TAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	13.00	0.00	0.00	0.00	13.00
...................................C-----------------GGTAAATTGAGTGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	13.00	0.00	0.00	0.00	13.00
...................................C-----------------GGCAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	13.00	0.00	3.00	0.00	10.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	13.00	0.00	0.00	0.00	13.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGA----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	13.00	0.00	0.00	0.00	13.00
...................................C-----------------GCTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	13.00	0.00	0.00	0.00	13.00
...................................C-----------------CGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	12.00	0.00	1.00	0.00	11.00
...................................C-----------------GGAAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	12.00	0.00	0.00	0.00	12.00
.....................................................GGTAAATTGAATGA------------------------------------------TGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	12.00	0.00	0.00	0.00	12.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TTAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	12.00	0.00	0.00	0.00	12.00
...................................C-----------------TGTAAATTGAATGA------------------------------------------TGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	11.00	0.00	0.00	0.00	11.00
...................................C-----------------GGTAAATTGAATGG------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	11.00	0.00	0.00	0.00	11.00
...................................C-----------------GGTAAATTAAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	10.00	0.00	1.00	0.00	9.00
...................................C-----------------GGTAAATTGAATTA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	10.00	0.00	0.00	0.00	10.00
...................................C-----------------GGTAAACTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGA.............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	10.00	0.00	0.00	0.00	10.00
...................................C-----------------GCTAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	10.00	0.00	0.00	0.00	10.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TTAG............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	10.00	0.00	0.00	0.00	10.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGACTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
...................................C-----------------GATAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	10.00	0.00	1.00	0.00	9.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	10.00	0.00	1.00	0.00	9.00
...................................C-----------------GTTAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	10.00	3.00	0.00	0.00	7.00
...................................C-----------------GGTxAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	10.00	0.00	0.00	0.00	10.00
...................................C-----------------AGTAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TAAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
...................................C-----------------GGTAAGTTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	10.00	0.00	1.00	0.00	9.00
...................................A-----------------GGTAAATTGAATGA------------------------------------------TGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	9.00	0.00	1.00	0.00	8.00
.......................................................TAAATTGAATGA------------------------------------------TGAGTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	0.00	0.00	0.00	9.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	9.00	0.00	2.00	0.00	7.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGATTGGG----------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	9.00	3.00	0.00	0.00	6.00
...................................C-----------------GGTAAATTTAATGA------------------------------------------TGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	9.00	0.00	0.00	0.00	9.00
...................................C-----------------GGTAAATCGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	9.00	0.00	0.00	0.00	9.00
...................................C-----------------TGTAAATTGAATGA------------------------------------------TGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	0.00	0.00	0.00	9.00
...................................C-----------------GGTAAATTGAATAA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	9.00	0.00	0.00	0.00	9.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------CGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	9.00	0.00	0.00	0.00	9.00
...................................C-----------------GGTAAATTGAATGC------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	8.00	0.00	1.00	0.00	7.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	8.00	0.00	1.00	0.00	7.00
...................................C-----------------GGAAAATTGAATGA------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	8.00	0.00	2.00	0.00	6.00
...................................C-----------------GGTAAATTGAATGC------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------TT--------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................	25	1	8.00	0.00	0.00	0.00	8.00
...................................C-----------------GGGAAATTGAATGA------------------------------------------TGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	8.00	0.00	1.00	0.00	7.00
...................................C-----------------GGTAAATTGAATGA------------------------------------------TGCGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
...................................C-----------------GGTAAATTGAATGG------------------------------------------TGAGTGGG----------------........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	8.00	0.00	1.00	0.00	7.00

droEug1

T-------------TGTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCC--------TGCTATTGTTCGGTT-GATAAGGGAGCCTGGC-----------------------------------------------------------------------AACTATTACCTGGCGC--TG----------------------------------AAACGGGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCG---------CATCAACATCATCGAACCACACCGACATCATCATAATA------------

Size

Hit Count

Total Norm

droBia1

TTTATT--------TGTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------TGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCC--------TGCCATTGTTCGGCC-GATAAGGGAGCCTGCC-----------------------------------------------------------------------AACTATTACCTGGCGC--TG----------------------------------AAACGGGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCG---------CATCAGCA----------GCAACGACACCATCATAATAATCACCGTCATC

Size

Hit Count

Total Norm

droTak1

T-------------TGTATGGATTTTTCGGCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCATTGTTCGGCT-GATAAGGGAGCCTGGC-----------------------------------------------------------------------AACTATTACCTGGCGC--TG----------------------------------AAACGGGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCG---------CATCA-------------------------GCATCAACATCACCG-----

Size

Hit Count

Total Norm

droEle1

AT---ATATATTTTTGTATGGATTATTCGGCGTGGC-----------------AGTAAATTGAATGA------------------------------------------CGAGTGGG----------------AG--------------------------------------------------------------------------------------------------GATGTCGCT---------GCCATTGTTCGCCT-GATAAGGGAGCCGGGCCA----------------------------------------------------------------------ACTATTACCTGGCGCGCTG----------------------------------AAACGGGAGCCCA---------------------CCTGTCAATCAATACCACACCGCCG---------CATCA---------------------------------------------

Size

Hit Count

Total Norm

droRho1

TT------------TGTATGGATTTTTCGGCGTGGC-----------------GGTAAATTGAATGA------------------------------------------CGAGCGGG----------------AG--------------------------------------------------------------------------------------------------GATATCGCT---------GCCATTGTTCGGCT-GATAAGGGAGCCGGGC-----------------------------------------------------------------------AACTATTACCTGGCGC--TG----------------------------------AAACGGGAGCCCA---------------------CCTGTCAATCAATACCACCCCGCCG---------CATCA---------------------------------------------

Size

Hit Count

Total Norm

droFic1

C-------------TGTATGGATTTTTCGGCGTGGC-------GT--------GGTAAATTGAATGATGAGTGGGTA--------------------------------TG--GGAGTGGGAGTGGCAGTGGGGG--------------------------------------------------------------------------------------------------GATGTCGCA---------GCCATTGTTCGGCT-GATAAGGGAGCCGGGC-------------------------------------------------------------------AGGCAACTATTACCTGCCGC--TG----------------------------------GAACGGGAGTCCG---------------------CCTGTCAATCAATACCACCCCGCGG---------CATCA-------------------------TCGCACC-GACATCATCGTC

Size

Hit Count

Total Norm

droKik1

TATATATATACTAATGTATATA--------TTTA--------------------------------G------------------------------------------CCAACAGG----------------GGGTTAACTTTCTTAT-------CGATGG-TTTTCGAGCATTTAAAA-----------------------------------------------------TTGGTTGCT-----------GATTGCTGTCTT-CAAAATAAAGCCCAGCTT----------------------------------------------------------------------AGGTTTAACTTGGTCTAAG------------------------------------------AGCCA-----------------------------------------------------------------------------------------------------CCCT

Size

Hit Count

Total Norm

droAna3

TGTATATGT--------GTGGGTGTAGAGGTGTGTA-----------------GGTGTGCAGGTGTA------------------------------------------CGGTTGTG----------------TG--------------------------------------------------------------------------------------------------TGTGTGGCATTCGTTGCTACTTATGTTT----AAGCTTCGTATTTAAG-------------------------------------------------------------------------------------------------------CTTTTTGCACGATTTCCTCTAACAAATGGATTTTCA---------------------CTTGTTG----------CCCAGCCAGACGAACGAA-------------------------GCCATCACAAAAAT----------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........T--------GTGGGCGTAGGGGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------	21	9	0.11	0.00	0.00	0.00	0.11
........T--------GTGGGTGTAGGGGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.....ATGT--------GTGGGTGxGGAGGTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00

droBip1

TT-----------------------CTCGGCGGGATACGGCCTCT--------CGTAAATTGAATGA------------------------------------------TGAGCAGA----------------AGGGTGGGGTTTGGGT-------GGGTGGACGGTCTGGCATGACAAT-----------------------------------------------------GATGTCGCC--------TGCCATTGTTTGGGA-GATAAGGGACCCAGGGTC-----------------------------------------------------------------TGGGAACTATTACCTGGTCGGGTG-----------------------------GGGAGAAACGAGATCCTG--------GCGGAGTCGGGAGCCTGTCAATCAATGGGATGCCACC------------------------------------------------GCCGCCGCCAGT

Size

Hit Count

Total Norm

dp4

TATATG--------------GCCTATCCAGCAGGAA-------TTTATCCAGCG--------GATGGTAGCTAGAGA--------------------------------TG--CAGTTGG-------------AG--------------------------------------------------------------------------------------------------GGGGGC------------ACCATAGTTTGGAG-TAGCCAAATGCCAGGCGA-----------------------------------------------------------TAAGG------CATGAAA------AA--TA----------------------------------CAACTAATAAACATAAACCAG-------------TCTTCTTTTAAAAGCTGCT---------------C-------------------------ATCATCATCATCATCATGATCATC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATCATCATCATCATC	19	44	0.02	0.00	0.02	0.00	0.00
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT---------------C-------------------------ATCATCATCATCATC.........	19	44	0.02	0.00	0.02	0.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCATCATCATCATCATC	22	27	0.04	0.04	0.00	0.00	0.00
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------ATCATCATCATCATCAGCA.....	20	34	0.03	0.03	0.00	0.00	0.00
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT	19	44	0.02	0.00	0.02	0.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATCATCATCATCATC...	19	44	0.02	0.00	0.02	0.00	0.00
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------ATCATCATCACCATCATCA.....	20	36	0.03	0.00	0.03	0.00	0.00
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------ATCATCATCATCATCACT......	19	20	0.05	0.05	0.00	0.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCATCACCATCATCA..	20	36	0.03	0.00	0.03	0.00	0.00
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------ATCATCATCATCATCATCATC...	22	27	0.04	0.04	0.00	0.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCATCATCATCAGCA..	20	34	0.03	0.03	0.00	0.00	0.00
......................................................................CGTGAGA--------------------------------TG--CAGTTGG-------------AG--------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------TTCATCATCATCATCATC......	19	44	0.02	0.00	0.02	0.00	0.00

droPer1

CATAAAAGGGTCTGAGTATC--------TGAG--------------------------------CGT----------CTGGGTGGAACCTC---TGTG----------CTG--CTAA----------------TG---------------------------------------------TTAGCTGATCCCTCTCCTCCCTCCCACTCGGTCCCTGCCCCC----------------------------------------GCT-C-CCTTGGTGGCTGTTGC----------------------------------------------------------------------ACTTTCCCCCGGGGCTCTGGAGTGTGCACACTTTTGGCATAATA----CAACAAAATTGATT---------------------------------------------TGCAG--------CA-------------------------TGCATCATTATCAACATCGTCGTT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................................................................................GTGGxACCTC---TGTT----------CTG--CT..........................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................................GGGTGGxACCTC---TGTT----------CTG--CT..........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00

droWil1

TTTTTTGAAATGTTTGTA--------AATGTGTGTG-----------------TGTTTGTGTGTGAA------------------------------------------GAAGAAT--------------G--TG-------------TGTATGTG------------------------CTGACTAGTT----------------------------CAATAATGCCCAGAGAATGTTA-------------------------------------------C----------------------------------------------------------------------AAGTTTAATGGAAGTTTTCA---------------------------------AATAGAAAAGCTA---------------------AAAGGAATTTAATTTTAGACATCAGTT---TCGAA-----------------GC------ATCGGCATCACAATCATCCCCATT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------AGAGGGATTTAATTTTA...................................................................	18	2	8.00	0.00	8.00	0.00	0.00
.............ATGTA--------AATGAGTGTG-----------------TGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	5.50	0.00	0.50	5.00	0.00
...........................ATGTGTGTG-----------------TGTGTGTATGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.50	0.00	0.36	0.14	0.00
..........TGTATGTA--------AATGAGTGTG-----------------TGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	0.00	0.00	6.00	0.00
...................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------AAAGGGATTTAATTTTT...................................................................	18	1	6.00	0.00	5.00	1.00	0.00
.............ATGTA--------AATGAGTGTG-----------------TGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	0.00	0.00	3.00	0.00
...................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------AGAGGAATTTAATTTTT...................................................................	18	1	3.00	0.00	2.00	1.00	0.00
.............ATGTA--------AATGTGTGTG-----------------TATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.75	0.00	0.75	0.00	0.00

droVir3

TATATATATAGATATATATATA--------TATATA-----------------TGCT--GGGTTATA-----------------------------------------TGA--CTTT---------------------------------------------------------------------------------------------------------------------TGG-----------------------GTGCT-GATAAGAGG--CGTTCAG---------------CTCA-------GTGCCAGAGCCCAGCGGCTAATTGACAGCCCCACGGGCCATG--CGGTTAA------AT--TA----------------------------------AAACGAAAAATCA---------------------TTTGCCAGC-AGCA-------------------AC------AGCAGCA-GCAGCAGCGGCAGCAGC-----------------A	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------AGCAGCA-GxAGCAGCGGC........................	19	31	0.13	0.13	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------AC------AGCAGCA-GCAGCAGTGGAAGC.....................	25	22	0.05	0.05	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------AC------AGCAGAA-GCAGCAGCGGCAGGA....................	26	10	0.10	0.00	0.00	0.10	0.00	0.00
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------AC------AGAAGCA-GCAGCAGCGGC........................	21	605	0.00	0.00	0.00	0.00	0.00	0.00
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCGGCAGCGGC-----------------A	19	38	0.03	0.00	0.00	0.03	0.00	0.00
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------AC------AGCAGCA-GCAGCAGTGGAAG......................	23	37	0.03	0.00	0.03	0.00	0.00	0.00
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------AC------AGCAGCA-GCAGCAGCGCCA.......................	22	17	0.06	0.06	0.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------AC------AGCAGCA-GCTGGAGCGGC........................	22	33	0.03	0.00	0.00	0.03	0.00	0.00
.......................................................................................................................................................................................................................................................................................TTTAG---------------CTCA-------GTGGCAGAG..............................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA-GCAGCAGCGTCAGCAGC-----------------A	25	41	0.02	0.00	0.00	0.02	0.00	0.00
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------AC------AGCAGCA-GCAGCAGTGGAAG......................	25	30	0.03	0.00	0.00	0.03	0.00	0.00

droMoj3

TAGCAACTCGTTTCTGTTGC--------TGTA-------------------------TGTGTAGCTG-----------------TAGCTGTATCTGTAGCTGTATCTG-TGGCTGT--------------A--TC-------------TGTATCTG------------------------GCAGCTGG------------------------------CAGCAGTAGCTGGTAGCTGCTG---------CTGGCTCT-------------------------------------------------------------------------------------------------GTTGCTGCCAGAGTATCTG---------TATCTGTGGCGCGTCA----T----------------------------------------TGTTGT----------------GCG---TTGCC-------------------------GTTGCCATCGTAACCAACGCCGTC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................................GAGTAGCTG-----------------TATCTGTATCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	0.00	0.00	0.00	0.20
..................................................................G-----------------TAGCTGTAGCTGTAGCTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	0.10	0.00	0.00	0.00
............................................................GTAGCTG-----------------TAGCTGTAGCTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	0.10	0.00	0.00	0.00

droGri2

TACATCCACATCGCTGCT--------TCGGCTTATG-------------TTGTGGTAAGTCATTAGA------------------------------------------TG--CAGA----------------TG--------------------------------------------------------------------------------------------------ATTGGCGTC---------ATCATCGCCTGCTTCCACATCATAGTCAAGGGTATTCTTTTCTGCCGTCTCAATGAGCG---CTAGCG-------------------C---------------CGATGAG-------------------------------ATATCA----A----------------------------------------CGA--------GGTGCT---------------C-------------------------TTCATCATCATCATCATCGTCATC	Size	Hit Count	Total Norm	V109 Male body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCCTCATCATCATCGTC...	21	17	0.06	0.06

Generated: 04/20/2012 at 05:28:54 EDT

dme-mir-4969

chr3R:17624235-17624393 -

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup