dme-mir-4969

chr3R:17624235-17624393 -

Known_mirbase

[View on miRBase] [View on UCSC Genome Browser {Cornell Mirror}]

intron


Legend:

   mature strand at position 17624350-17624373
   star strand at position 17624257-17624278
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species Coordinate Alignment
dm3 chr3R:17624220-17624408 - TtTtTtTtTGTTTTTGTATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCT-GCCATTGTTT-GGTTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGATGCG-AgtTgtTgtTttTttTgtTgGggTTT
droSim1 chr3R:17429869-17430049 - TGTTTTTG--------TATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGTTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTAAATCAATA-----CCACCCCGCCGAAGCG-AgtTgtTgtTttTttTgtTgGggTGg
droSec1 super_0:17996591-17996759 - TGTTTTTt--------TtTGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGTTGATAAGGAAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAAGCG-AgtTg------------tTgGggTTT
droYak2 chr3R:18444204-18444377 - G---------------TATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGCTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCCCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAACCG-AgtTgtTgtTttTttTgtTgGggtGg
droEre2 scaffold_4820:10462897-10463070 + G---------------TATGAATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGCTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCCCTGTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAACCG-AgtTgtTgtTtGTttTgtTgGggtTg
droAna3 Unknown TACTT----------------ATTTCTCGGCG-GGATACGGCC--T------CTCGTAAATTGAATGATGAGCAG---------------------GAGGATGTCGCCTGCCATTGTTT-GGGAGATAAGGCACCCAGGGGCTGGGAACTATTACCTGGA-CGGGGAAACGGGATCCTGGCGGAGTCGGG----------------AG----------------CCTGTCAATCAATGGGATGCCACC--GCCACCGCC-A-----------------------TC
dp4 chr2:6481318-6481369 - TTTGGCTTTTTCCTTTT--------CCGT--AACCTT------TT-CCT----CG-------AAATGCGGAGTGG---------------------GG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA
droPer1 Unknown TTTTTTCCC-----TGTGCGGACTCTC-------------------ACC----CAACAAATTGAATGATGAACAGAGCCCGGCTGACAACAACAAGGATGATGTCGCT-GCCATTGTTC-GCCCGATAAGGGAGC-TGGCA------ACTATTACCTGGGTCGGGGGCGGGCGGTGGTGGTGGAGATGGG----------------A------------------CTGTCAATCAATA-----TGCCCC-------------------------------------
droWil1 scaffold_181130:11673057-11673207 - AATATCAAT--------TTTGCTG---------TTTT------TT-T-TCGATACCAAAATTGAATGATGAACAG---------------------GCACCTGACA---------ACT-----------TGGATGCGGGGGA-----AATACTATATATGATTTTAACATTCTA-----------------------------CCCCA----------------T-----CATCATCA-----TCAAGCATCCGACGCGTCGCCGCTGT---------TTGCCATT
droVir3 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:17209927-17210133 - TTTTTCTTCTTCTTCAT--------TTGG--GGCTCG------TG-T-CGGGCACCAGAATTGAATGATTTGTGA---------------------CTGACAGCAGCA-GCGGCGGGCCCCAAGGATGCGGGATATGGGTGATGGGGTATGCGTGACGAG-CAGCGATGCGGGAT--------GGATGGAGCTGCGTGGCAGAGTACACGTCGCATCGGATACGGATG-ACAGCGCTA-----CAACGGCGCCAAAGCC-ATT-----------------------
droGri2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species Coordinate Lastz Id Alignment
dm3 chr3R:17624220-17624408 - NA TATATATATGTTTTTGTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCT---------GCCATTGTTTGGTT-GATAA--GGG-----AGCCTGGC-----------------------------------------------------------------------------------------GCACTATTACCTG---------GCTCTCTG-------------------------------------------------------AAACGAGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGATG-------------------CGACATCATCATAATAATCATCGCCTTT
droSim1 chr3R:17429869-17430050 - 83 TGTTTTT--------GTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCA---------GCCATTGTTTGGTT-GATAA--GGG-----AGCCTGGC-----------------------------------------------------------------------------------------GCACTATTACCTG---------GCTCTCTG-------------------------------------------------------AAACGAGAGCCCA-------------CCTGTAAATCAATACCACCCCGC----CGAAG-------------------CGACATCATCATAATAATCATCGCCTGC
droSec1 super_0:17996591-17996767 - 110 TATATATATGTTTTTATATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCA---------GCCATTGTTTGGTT-GATAA--GGA-----AGCCTGGC-----------------------------------------------------------------------------------------GCACTATTACCTG---------GCTCTCTG-------------------------------------------------------AAACGAGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGAAG-------------------CGACA------------TCATCGCCTTT
droYak2 chr3R:18444204-18444378 - 87 ---------------GTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCA---------GCCATTGTTTGGCT-GATAA--GGG-----AGCCTGGC-----------------------------------------------------------------------------------------GCACTATTACCTG---------GCCCTCTG-------------------------------------------------------AAACGAGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGAAC-------------------CGACATCATCATAATAATCATCGCCAGC
droEre2 scaffold_4820:10462895-10463063 + 64 TG--------------TATGAATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCA---------GCCATTGTTTGGCT-GATAA--GGG-----AGCCTGGC-----------------------------------------------------------------------------------------GCACTATTACCTG---------GCCCTGTG-------------------------------------------------------AAACGAGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGAAC-------------------CGACATCATCATAGTAATCAT-------
droEug1 scf7180000409490:922102-922283 - 145 TT-------------GTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCC--------TGCTATTGTTCGGTT-GATAA--GGG-----AGCCTGGC------------------------------------------------------------------------------------------AACTATTACCTG---------GCGC--TG-------------------------------------------------------AAACGGGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGCATCAACATCATCGAACCACACCGACATCATCATAAT------------A
droBia1 scf7180000302402:6490942-6491130 + 31 TTTATTT--------GTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCC--------TGCCATTGTTCGGCC-GATAA--GGG-----AGCCTGCC------------------------------------------------------------------------------------------AACTATTACCTG---------GCGC--TG-------------------------------------------------------AAACGGGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGCATCAGCA----------GCAACGACACCATCATAATAATCACCGTCATC
droTak1 scf7180000415659:190736-190910 - 37 TATATATATTT--------------TTTAG------------------TAATTCGATCGG---------------------------------------------------------------------------------------------------------------------------------CCG--GTG-----GGCCTTGC--TTATATCTATAGCCATTGTGAAAGTACATCTCGAACTGTCCGCCTGTC---------------------------------------ACTCAGTCAATTG---------ATTTTCCG-------------------------------GTACCCACGGCACACTTGAC----ATGCATACAG--------------------------CGTGCT--------------------------GC---T------CATCATCATCATCATCATCATCATC
droEle1 scf7180000491212:2052035-2052195 - 385 AT---ATATATTTTTGTATGGATTATTCGGCGTGGC----------AGTAAATTGAATGA------------------------------CGAGTGGG----------------AG--------------------------------------GATGTCGCT---------GCCATTGTTCGCCT-GATAA--GGG-----AGCCGGGC-----------------------------------------------------------------------------------------CAACTATTACCTG---------GCGCGCTG-------------------------------------------------------AAACGGGAGCCCA-------------CCTGTCAATCAATACCACACCGC----CGCATC---------------------------------------------A
droRho1 scf7180000767859:662-810 + 3 TTT------------GTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------CGAGCGGG----------------AG--------------------------------------GATATCGCT---------GCCATTGTTCGGCT-GATAA--GGG-----AGCCGGGC------------------------------------------------------------------------------------------AACTATTACCTG---------GCGC--TG-------------------------------------------------------AAACGGGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGCATC---------------------------------------------A
droFic1 scf7180000454106:760656-760852 - 77 CT-------------GTATGGATTTTTCGGCGTGGCGT--------GGTAAATTGAATGATGAGTGGGTA--------------------TG--GGAGTGGGAGTGGCAGTGGGGG--------------------------------------GATGTCGCA---------GCCATTGTTCGGCT-GATAA--GGG-----AGCCGGGC--A----------------------------------------------------------------------------GG--------CAACTATTACCTG---------CCGC--TG-------------------------------------------------------GAACGGGAGTCCG-------------CCTGTCAATCAATACCACCCCGC----GGCATCATC-----------GCACCGACA---------------TCATCGTC
droKik1 scf7180000302344:1257937-1258077 - 71 TATATATATACTAATGTATATATTTAGCCAACAGG-------------------------------------------------------------------------------GGGTTAACTTTCTTATCGATGG-TTTTCGAGCATTTAAAATTGGTTGCT-----------GATTGCTGTCTT-CAAAA--TAA-----AGCCCAGC-----------------------------------------------------------------------------------------TTAGGTTTAACTT---------GGTCTAAG---------------------------------------------------------------AGCCA----------------------------------------------------------------------------------------CCCT
droAna3 scaffold_13417:705028-705198 + 76 TGTATATGTGT--------GGGTGTAGAGGTGTGTA----------GGTGTGCAGGTGTA------------------------------CGGTTGTG----------------TG--------------------------------------TGTGTGGCATTCGTTGCTACTTATGTTT----AAGCTT--CGTATTTAAGCTTTTT-----------------------------------------------------------------------------------------GCACGATTTCC-------------TCTAAC-------------------------------------------------------AAATGGATTTTCA-------------CTTGTTG----------CCCAGCCAGACG-AA-------------------CGAAGCCATCACAAAAA----------T
droBip1 scf7180000396708:224669-224886 + 16 TTCTCGGCGGGATA-------------CGGCCTC-T----------CGTAAATTGAATGA------------------------------TGAGCAGA----------------AGGGTGGGGTTTGGGTGGGTGGACGGTCTGGCATGACAATGATGTCGCC--------TGCCATTGTTTGGGA-GATAA--GGG-----ACCCAGGGTCT----------------------------------------------------------------------------GG--------GAACTATTACCTG---------GTCGGGTG------GG--------------------------------------------GAGAAACGAGATCCTGGCGGAGTCGGGAGCCTGTCAATCAATGGGATGC-------------------------------------------CACCGCCGCCGCCAGT
dp4 chr4_group3:1192892-1193069 - 106 TATATGGCCT--------------ATCCAGCAGGAATTTATCCAGCGGATGGTAG--------CTAGAGA--------------------TG--CAGTTGG-------------AG--------------------------------------GGGGGC------------ACCATAGTTTGGAG-TAGC---------------------------------------------------------------------------------------------------------------CAAATGCCAG---------GCGA--TA-----------------------------AGGCATGAAAAATACAACTAAT----AAACATAAACCAG-------------TCTTCTTTTAAAAGCT--------------------------GC---T------CATCATCATCATCATCATGATCATC
droPer1 super_7:2291330-2291534 - 109 CATAAAAGGGTCTGAGTA---------------------------------TCTGAGCGT-----------------------------CTGGGTGGA----------------AC--------------------------------------CTCTGTGCT---------GCTAATGTTA-GCT-GATCCCT----------------------------------------------------------CTCCTCCCTCCCACTCGGTCCCTGCCCCCGCTCCCTTGGTGGCTGTTGCACTTTCCCCCG---------GGGCTCTG------------GAGTGTGCACACTTTTGGCA---------TA--A--TACAACAAAATTGATT-------------------------------------TGC----AG------------------------CATGCATCATTATCAACATCGTCGTT
droWil1 scaffold_181089:335812-335995 + 262 TTTTTTGAAATGTTTGTA--------AATGTGTGTG----------TGTTTGTGTGTGAA------------------------------GAAGAAT--------------G--TG-------------TGTATGTG-------------------------------------------CTGACT-AGTTCAATAA-----TGCCCA----------------------------------------------------------------------------------GAGAATGTTACAAGTTTAATGG---------AAGTTTTC------------A------------------------------------------AATAGAAAAGCTA-------------AAAGGAATTTAATTTTAGACATC----AGTTTCG--------AA---G------CATCGGCATCACAATCATCCCCATT
droVir3 scaffold_12963:15197471-15197651 + 448 TATATATATAGATATATATATATATA--------TA----------TGCT--GGGTTATA------------------------------TG--------------------------------------------------------------------------------ACTTTTGG-GTGCT-GATAAGA-GG-----CGTTCAGC--------------------------------------------------------TCAGTGCCAGAGCCC--------AGC-------GGCTAATTGACAGCCCCACGGGCCATGC--------------------------GGTTA---------AATTA------------AAACGAAAAATCA-------------TTTGCCAGC---------------------AGCAACAGCAGC-AGCAGCAGCGGCAGCAGC-----------------A
droMoj3 scaffold_6496:7093711-7093898 - 2013 TAGCAACTCGTTTCTGTT----------------GC----------TGTATGTGTAGCTG------TAGCTGTATCTGTAGCTGTATCTGTGGCTGT--------------A--TC-------------TGTATCTG-------------------------------------------GCAGCT-GGCAG--CAG-----TAGCTGGT------------------------------------------------------------------------------------------AGCTGCTGCTGG---------CTCTGTTG------CTGCCAGAGTATCTGTATCTGTGGCGCGTCAT---------------------------------------------TGTTG--------------------TGCGT-------------------TGCCGTTGCCATCGTAACCAACGCCGTC
droGri2 scaffold_15126:1496468-1496644 - 2008 TACATCCACATCGCTGCT--------TCGGCTTATG------TTGTGGTAAGTCATTAGA------------------------------TG--CAGA----------------TG--------------------------------------ATTGGCGTC---------ATCATCGCCTGCTTCCACAT--CAT-----AGTCAAGG-----------------------------------------------------------------------------------------GTATTCTTTTCTG---------CCGT--CTCAATGAGCGCTAGCG--------CCGATGAGATATCAA-----------------------------------------------------CGAGGT--------------------------GC---T------CTTCATCATCATCATCATCGTCATC

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species Alignment
dm3
TtTtTtTtTGTTTTTGTATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCT-GCCATTGTTT-GGTTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGATGCG-AgtTgtTgtTttTttTgtTgGggTTTSizeHit CountTotal Norm
droSim1
TGTTTTTG--------TATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGTTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTAAATCAATA-----CCACCCCGCCGAAGCG-AgtTgtTgtTttTttTgtTgGggTGgSizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
.....................................................CGGTAAATTGAATGATGAGGGG---------------------G.............................................................................................................................................................................................2311.000.001.000.000.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................2411.000.001.000.000.00
.....................................................CGGTAAATCGAATGATGAGTGG---------------------..............................................................................................................................................................................................2211.000.001.000.000.00
droSec1
TGTTTTTt--------TtTGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGTTGATAAGGAAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAAGCG-AgtTg------------tTgGggTTTSizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
.....................................................CGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................221198.0012.009.00177.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................241138.003.00122.0013.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................23152.007.0012.0033.00
......................................................GGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................23112.004.004.004.00
.....................................................CGGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................21110.000.002.008.00
.....................................................CGGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................2018.000.000.008.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCACC......................................2214.000.004.000.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GAT...........................................................................................................................................................................................2514.000.001.003.00
...................GGATTTTTCGGCG-------------T-----GGCGG......................................................................................................................................................................................................................................1914.001.003.000.00
......................................................GGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................2213.001.000.002.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GT............................................................................................................................................................................................2413.002.000.001.00
.....................................................CGGTAAATTGAATGATGAG......................................................................................................................................................................................................................1913.000.000.003.00
.....................................................TGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................2412.000.002.000.00
.....................................................CGGTAAATTGAGTGATGAGTGG---------------------..............................................................................................................................................................................................2212.001.001.000.00
.......................................................GTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................2212.000.002.000.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCACT......................................2212.000.002.000.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------A.............................................................................................................................................................................................2312.000.000.002.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------T.............................................................................................................................................................................................2312.000.001.001.00
.....................................................CGGTAAATTGAATGATGAGCGG---------------------..............................................................................................................................................................................................2211.000.000.001.00
.....................................................CTGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2211.000.000.001.00
........................................................TAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................2011.001.000.000.00
....TTTA--------TATGGATTTTTCGGCG-------------T-----GG.........................................................................................................................................................................................................................................2311.000.000.001.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GC............................................................................................................................................................................................2411.000.000.001.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GTC...........................................................................................................................................................................................2511.000.000.001.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------GA............................................................................................................................................................................................2411.000.001.000.00
..TTTTTT--------TTTGGxTTTTTGGG................................................................................................................................................................................................................................................................1911.000.000.001.00
......................................................GGTAAATTGAATGATGAGTGG---------------------GC............................................................................................................................................................................................2311.000.001.000.00
.....................................................CGGTAAATTGAATGATGAGCGG---------------------GA............................................................................................................................................................................................2411.000.001.000.00
.............................................T-----GGCGGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................2411.001.000.000.00
.....................................................CGGTAAATTGAATGATGAATGG---------------------G.............................................................................................................................................................................................2311.000.000.001.00
.....................................................CGGTAAATTAAATGATGAGTGG---------------------..............................................................................................................................................................................................2211.000.000.001.00
....................................................GCGGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................2111.000.000.001.00
.........................................................AAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................2011.001.000.000.00
.....................................................AGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2211.000.000.001.00
.....................................................CGGTAAATTGAATGATTAGTGG---------------------..............................................................................................................................................................................................2211.000.000.001.00
...........................................................................................................................................................................................................................................................CTGAAGCG-AGTGG------------TTGGG....1811.000.000.001.00
.....................................................CGGTAAAATGAATGATGAGTGG---------------------..............................................................................................................................................................................................2211.000.000.001.00
.................................................................................................................TGGTTT-GCTTGATAAGGA..........................................................................................................................................................1811.000.000.001.00
.....................................................CGGTAACTTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................2411.000.001.000.00
................................................................................................................ATTGTTT-GGTTGATAAGGAAGCCTG....................................................................................................................................................2511.000.001.000.00
............................................................TTGAATGATGAGTGG---------------------GAGGATG.......................................................................................................................................................................................2211.000.000.001.00
.....................................................CGTTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................2411.000.001.000.00
......................................................GGTAAATTGAACGATGAGTGG---------------------..............................................................................................................................................................................................2111.000.000.001.00
.....................................................CGGTAAATTGAATGATGAGGGG---------------------GA............................................................................................................................................................................................2411.000.001.000.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------..............................................................................................................................................................................................2211.001.000.000.00
........................................................TAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................1911.001.000.000.00
.....................................................CGTTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................2311.000.000.001.00
......................................................CGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................2211.000.000.001.00
.....................................................CGGTACATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2211.000.000.001.00
.....................................................CGGTAAATTGAATGATGCGTGG---------------------G.............................................................................................................................................................................................2311.000.000.001.00
......................................................CGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2111.001.000.000.00
.........................................................AAATTGAATGATGAGTGG---------------------GT............................................................................................................................................................................................2011.001.000.000.00
.....................................................CGGTAAATTGAATAATGAGTGG---------------------G.............................................................................................................................................................................................2311.000.001.000.00
.....................................................TGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2211.000.000.001.00
droYak2
G---------------TATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGCTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCCCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAACCG-AgtTgtTgtTttTttTgtTgGggtGgSizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
.....................................................CGGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................231625.0021.0071.0084.00303.00146.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................221624.008.0039.00123.00215.00239.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................241439.00173.0016.0072.0082.0096.00
.....................................................CGGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................201142.000.008.0013.0055.0066.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GAA...........................................................................................................................................................................................25144.000.002.001.002.0039.00
.....................................................CGGTAAATTGAATGATGAG......................................................................................................................................................................................................................19141.000.004.004.0015.0018.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCACC......................................22139.0033.000.000.000.006.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GT............................................................................................................................................................................................24132.000.004.001.0018.009.00
......................................................GGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................23125.003.001.0012.009.000.00
.....................................................CGGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................21118.001.002.001.0011.003.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GG............................................................................................................................................................................................24112.000.000.000.001.0011.00
....................................................GCGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2318.001.000.000.003.004.00
.....................................................CGGTAAATTGAATGATGAGG.....................................................................................................................................................................................................................2018.000.000.000.000.008.00
.....................................................CGGTAAATTGAATGATGAGTGT---------------------G.............................................................................................................................................................................................2318.000.002.000.006.000.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GC............................................................................................................................................................................................2417.002.000.000.003.002.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------T.............................................................................................................................................................................................2316.000.001.000.005.000.00
.......................................................GTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................2216.001.000.003.002.000.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GAT...........................................................................................................................................................................................2516.001.000.001.002.002.00
.....................................................CGGTAAATTGAATGATGAGTGT---------------------..............................................................................................................................................................................................2216.000.000.001.005.000.00
.....................................................CGGTAAATTGACTGATGAGTGG---------------------G.............................................................................................................................................................................................2315.000.000.000.005.000.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------G.............................................................................................................................................................................................2315.000.000.000.004.001.00
.....................................................CGGCAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2215.000.000.000.005.000.00
.....................................................CGGCAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................2315.000.001.000.004.000.00
......................................................GGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................2215.000.001.000.004.000.00
.....................................................CGGTAAATTGAATGATGAGTTG---------------------..............................................................................................................................................................................................2214.000.000.000.004.000.00
........................................................TAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................2114.000.000.004.000.000.00
.....................................................CGGTAAATTGAATGATGAGC.....................................................................................................................................................................................................................2014.000.000.001.000.003.00
.....................................................CGGAAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................2313.000.000.000.002.001.00
.....................................................CGGTAAATTGAATGCTGAGTGG---------------------..............................................................................................................................................................................................2213.000.000.000.003.000.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------A.............................................................................................................................................................................................2313.000.001.000.002.000.00
.....................................................CGGGAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2213.000.000.000.002.001.00
.....................................................CGGTAAATTGAATGATGAGTTG---------------------G.............................................................................................................................................................................................2313.000.001.000.002.000.00
.....................................................CGGTAAATTGAGTGATGAGTGG---------------------G.............................................................................................................................................................................................2313.001.000.000.002.000.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCACT......................................2213.003.000.000.000.000.00
droEre2
G---------------TATGAATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGCTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCCCTGTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAACCG-AgtTgtTgtTtGTttTgtTgGggtTgSizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
.....................................................CGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2219588.0011.00217.000.009360.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................2315037.0038.00326.000.004673.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................2412136.00143.00105.000.001888.00
.....................................................CGGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................2111364.005.0041.000.001318.00
.....................................................CGGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................2011225.000.0048.000.001177.00
.....................................................CGGTAAATTGAATGATGAG......................................................................................................................................................................................................................191616.000.0017.000.00599.00
......................................................GGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................231246.005.007.000.00234.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GT............................................................................................................................................................................................241150.000.004.000.00146.00
.....................................................CGGTAAATTGAATGATGAGTGT---------------------..............................................................................................................................................................................................221127.000.008.000.00119.00
.....................................................CGGTAAATTGAATGATGAGTTG---------------------G.............................................................................................................................................................................................231110.000.001.000.00109.00
.....................................................CGGTAAATTGAATGATTAGTGG---------------------..............................................................................................................................................................................................221101.000.000.000.00101.00
.....................................................AGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................221100.000.000.000.00100.00
.....................................................CGGTAAATTGAATGATGAGTTG---------------------..............................................................................................................................................................................................22190.000.000.000.0090.00
.....................................................CGGTAAATTGAATGATGAGTGA---------------------..............................................................................................................................................................................................22185.000.004.000.0081.00
.....................................................CTGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22178.000.000.000.0078.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------T.............................................................................................................................................................................................23178.000.004.000.0074.00
......................................................GGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................22176.000.006.000.0070.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCACC......................................22167.0016.002.000.0049.00
......................................................GGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................21162.000.002.000.0060.00
.....................................................CGGTAAATTTAATGATGAGTGG---------------------..............................................................................................................................................................................................22159.000.000.000.0059.00
.....................................................CGGTAAATTGAATTATGAGTGG---------------------..............................................................................................................................................................................................22156.000.000.000.0056.00
.....................................................CGGTAAATTGAATGATGAGTTG---------------------GA............................................................................................................................................................................................24154.003.000.000.0051.00
.....................................................CGGTAAATTGAATGATTAGTGG---------------------G.............................................................................................................................................................................................23148.001.000.000.0047.00
.....................................................CTGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................23148.000.000.000.0048.00
.....................................................AGGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................23145.000.000.000.0045.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------A.............................................................................................................................................................................................23144.000.001.000.0043.00
.....................................................CGTTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22144.000.000.000.0044.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------C.............................................................................................................................................................................................23140.000.002.000.0038.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GAT...........................................................................................................................................................................................25135.000.002.000.0033.00
....................................................GCGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................23135.000.002.000.0033.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------G.............................................................................................................................................................................................23134.000.004.000.0030.00
.....................................................CGGTAAATTGAATGATGAGTGT---------------------GA............................................................................................................................................................................................24132.006.003.000.0023.00
.....................................................CGTTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................23131.000.001.000.0030.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------..............................................................................................................................................................................................22131.000.001.000.0030.00
.....................................................CGGTAAATTGAATGATGAGTGT---------------------G.............................................................................................................................................................................................23129.001.0010.000.0018.00
.....................................................CGGCAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22128.000.000.000.0028.00
.....................................................CGGTAAATTTAATGATGAGTGG---------------------G.............................................................................................................................................................................................23127.000.000.000.0027.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------TA............................................................................................................................................................................................24126.003.000.000.0023.00
.....................................................CGGTAAATTGAATGATTAGTGG---------------------GA............................................................................................................................................................................................24125.002.001.000.0022.00
.....................................................CTGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................24124.000.000.000.0024.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------CA............................................................................................................................................................................................24124.000.000.000.0024.00
.....................................................CGGTAAATTGAATGATTAGTG....................................................................................................................................................................................................................21120.000.000.000.0020.00
.......................................................GTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................20120.000.001.000.0019.00
.......................................................GTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................22119.000.000.000.0019.00
.....................................................CGGTAAATTAAATGATGAGTGG---------------------..............................................................................................................................................................................................22119.000.000.000.0019.00
.......................................................GTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................21119.000.001.000.0018.00
.....................................................CGATAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22117.000.000.000.0017.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GAA...........................................................................................................................................................................................25117.000.001.000.0016.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCAC.......................................21117.001.002.000.0014.00
.....................................................AGGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................21117.000.000.000.0017.00
.....................................................AGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................24117.000.000.000.0017.00
.....................................................TGGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................23116.000.000.000.0016.00
.....................................................CGGTAAATTTAATGATGAGTGG---------------------GA............................................................................................................................................................................................24116.001.000.000.0015.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GC............................................................................................................................................................................................24116.002.003.000.0011.00
.....................................................TGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22116.000.002.000.0014.00
.....................................................CGGTAAATTGAATTATGAGTGG---------------------G.............................................................................................................................................................................................23115.000.000.000.0015.00
.....................................................CGGTAAATTTAATGATGAGTG....................................................................................................................................................................................................................21114.000.000.000.0014.00
........................................................TAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................20113.000.000.000.0013.00
.....................................................CGGCAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................23113.000.003.000.0010.00
.....................................................CGGTAAATTGAGTGATGAGTGG---------------------..............................................................................................................................................................................................22113.000.000.000.0013.00
.....................................................CGCTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22113.000.000.000.0013.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------AA............................................................................................................................................................................................24113.000.000.000.0013.00
.....................................................CGGTAAATTGAATGATGAGCGG---------------------..............................................................................................................................................................................................22113.000.000.000.0013.00
.....................................................CCGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22112.000.001.000.0011.00
......................................................GGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................20112.000.000.000.0012.00
.....................................................CGGAAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22112.000.000.000.0012.00
.....................................................CGGTAAATTGAATGATTAGT.....................................................................................................................................................................................................................20112.000.000.000.0012.00
.....................................................CGGTAAATTGAATGGTGAGTGG---------------------..............................................................................................................................................................................................22111.000.000.000.0011.00
.....................................................CTGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................20111.000.000.000.0011.00
.....................................................CGTTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................24110.003.000.000.007.00
.....................................................CGGTAAATTGAATGATAAGTGG---------------------..............................................................................................................................................................................................22110.000.000.000.0010.00
.....................................................CGGTAAATTGAATTATGAGTGG---------------------GA............................................................................................................................................................................................24110.000.000.000.0010.00
.....................................................CGATAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................23110.000.001.000.009.00
.....................................................CGGTAAATTGAATGATTAG......................................................................................................................................................................................................................19110.000.000.000.0010.00
.....................................................CGGTxAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................21110.000.000.000.0010.00
.....................................................CGGTAAATTGAATGATGAGGGG---------------------..............................................................................................................................................................................................22110.000.000.000.0010.00
.....................................................CGGTAAACTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22110.000.000.000.0010.00
.....................................................CAGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22110.000.000.000.0010.00
.....................................................CGGTAAATTGAATGATGA.......................................................................................................................................................................................................................18110.000.000.000.0010.00
.....................................................CGCTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................23110.000.000.000.0010.00
.....................................................CGGTAAATTGAATGATGGGTGG---------------------..............................................................................................................................................................................................22110.000.001.000.009.00
.....................................................CGGTAAATTAAATGATGAGTGG---------------------G.............................................................................................................................................................................................23110.000.001.000.009.00
.....................................................CGGTAAGTTGAATGATGAGTGG---------------------..............................................................................................................................................................................................22110.000.001.000.009.00
.....................................................CGGTAAATTGAATGATGACTGG---------------------..............................................................................................................................................................................................22110.000.000.000.0010.00
.....................................................CGGTAAATTGAATAATGAGTGG---------------------..............................................................................................................................................................................................2219.000.000.000.009.00
.....................................................CGGTAAATCGAATGATGAGTGG---------------------..............................................................................................................................................................................................2219.000.000.000.009.00
.....................................................CGGTAAATTGAATGATGAGTAG---------------------..............................................................................................................................................................................................2219.000.002.000.007.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------GA............................................................................................................................................................................................2419.003.000.000.006.00
.....................................................CGGTAAATTTAATGATGAGT.....................................................................................................................................................................................................................2019.000.000.000.009.00
.....................................................CTGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................2119.000.000.000.009.00
.....................................................AGGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................2019.000.001.000.008.00
........................................................TAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................2119.000.000.000.009.00
.....................................................CGGTAAATTGAATGACGAGTGG---------------------..............................................................................................................................................................................................2219.000.000.000.009.00
.....................................................CGGAAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................2318.000.002.000.006.00
.....................................................CGGTAAATTGAATGCTGAGTGG---------------------..............................................................................................................................................................................................2218.000.000.000.008.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GTT...........................................................................................................................................................................................2518.000.000.000.008.00
......................................................CGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2118.000.000.000.008.00
.....................................................CGGTAAATTGAATGCTGAGTGG---------------------G.............................................................................................................................................................................................2318.000.001.000.007.00
.....................................................CGGTAAATTGAATGATGAGTGA---------------------G.............................................................................................................................................................................................2318.000.000.000.008.00
.....................................................CGGGAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................2218.000.001.000.007.00
.....................................................CGGTAAATTGAATGGTGAGTGG---------------------G.............................................................................................................................................................................................2318.000.001.000.007.00
droAna3
TACTT----------------ATTTCTCGGCG-GGATACGGCC--T------CTCGTAAATTGAATGATGAGCAG---------------------GAGGATGTCGCCTGCCATTGTTT-GGGAGATAAGGCACCCAGGGGCTGGGAACTATTACCTGGA-CGGGGAAACGGGATCCTGGCGGAGTCGGG----------------AG----------------CCTGTCAATCAATGGGATGCCACC--GCCACCGCC-A-----------------------TCSizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
.......................TTCTCGGTG-GGATACGGTC--.................................................................................................................................................................................................................................................1911.001.000.000.000.00
......................................................................................................................T-GGGGGATAAGGGACCC......................................................................................................................................................1711.000.000.001.000.00
......................................................CGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................2211.000.001.000.000.00
.....................................................CGGTAAATTGAATGATGAG......................................................................................................................................................................................................................1911.000.001.000.000.00
.....................................................................................................................................................................................................................................CAATCACTGGGATGACAC.......................................1811.000.001.000.000.00
................................................................ATGATGATAAG---------------------GAGGAT........................................................................................................................................................................................1711.000.000.001.000.00
dp4
TTTGGCTTTTTCCTTTT--------CCGT--AACCTT------TT-CCT----CG-------AAATGCGGAGTGG---------------------GG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAASizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
droPer1
TTTTTTCCC-----TGTGCGGACTCTC-------------------ACC----CAACAAATTGAATGATGAACAGAGCCCGGCTGACAACAACAAGGATGATGTCGCT-GCCATTGTTC-GCCCGATAAGGGAGC-TGGCA------ACTATTACCTGGGTCGGGGGCGGGCGGTGGTGGTGGAGATGGG----------------A------------------CTGTCAATCAATA-----TGCCCC-------------------------------------SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
......................................................................................................................................................................GCGGGTGTTGGTGGTGGA......................................................................................................1814.004.000.000.000.000.00
................................................................................................................................................................TAGGGGGCGGGCGGTGTT............................................................................................................1812.000.000.000.002.000.00
...........................................................ATTGAATGATGAACAGAGCCC..............................................................................................................................................................................................................2111.000.000.000.000.001.00
............................................................................................................................................................................GGTGGTGGTGGGGAAGGG----------------A------------------.............................................................1911.001.000.000.000.000.00
................................................................................................................................................................TGGGGGGCGGGCGGTGTT............................................................................................................1811.000.000.000.001.000.00
..........................................................................................AACAAGGATGTTGTCGTT-.................................................................................................................................................................................1811.000.000.000.001.000.00
......................................................................................................................................................................GAGGGCGGTGGTGGTGGAGG....................................................................................................2011.001.000.000.000.000.00
..................................................................................................................................................................GGGGGCGGAGGGTGGTGG..........................................................................................................1811.000.000.001.000.000.00
..................................................................................................................................................................GTGGGCGGGTGGTGGTGGTGG.......................................................................................................2111.001.000.000.000.000.00
.............................................................................................................................AAAAGGGAGC-TGCCA------ACT........................................................................................................................................1811.000.000.000.001.000.00
..........................................................................................................................................................................GCGGTGGTGGTGGAGGAGG.................................................................................................1911.001.000.000.000.000.00
......................................................................................................................................................................GTGGGxGGTGGTGGTGGAG.....................................................................................................1811.000.000.000.001.000.00
..................................................................................................................................................................GGGGGTGGGGGGTGGTGG..........................................................................................................1811.000.000.001.000.000.00
...................................................................................................................................................................TGGGCGGGCGGTGGTGGG.........................................................................................................1811.001.000.000.000.000.00
..................................................................................................................................................................GCGGGCGGTCGxxGGTGGTGG.......................................................................................................1911.001.000.000.000.000.00
......................................................................................................................................................................GAGGGCGGTGGTGGTGGAG.....................................................................................................1911.001.000.000.000.000.00
..................................................................................................................................................................GGGGGCGGGCGGTGGTGGTGG.......................................................................................................2111.000.000.001.000.000.00
............................................................................................................................................................................GGTGGTGGTGGAGAGGGG----------------................................................................................1811.001.000.000.000.000.00
.................................................................................................................................................................TGGGGGCGGGCGGGGGTG...........................................................................................................1811.000.000.000.001.000.00
................................................................................................................................................................TCGGGGGCGGGCGGTxGTGCTG........................................................................................................2111.000.000.000.001.000.00
.................................................................................................................................................................CTGGGGCGGGxGGTGGTGG..........................................................................................................1811.000.000.000.001.000.00
..................................................................................................................................................................GGGGGTGGGAGGTGGTGG..........................................................................................................1811.001.000.000.000.000.00
............................................................................................CGAGGATGAxGTCGCT-GCC..............................................................................................................................................................................1811.000.000.000.000.001.00
................................................................................................................................................................TGGGGGGCGGGCGGTGAT............................................................................................................1811.000.000.000.001.000.00
...........................................................................................................................................................GTGGGTCGAGGGCGGGCGG................................................................................................................1911.000.000.000.001.000.00
............................................................................................................................................................TGGGTCGGGGGCxGGCGGGG..............................................................................................................1911.000.000.001.000.000.00
.............................................................................................................................................................................GTGGTGGTGGGGAAGGG----------------A------------------C............................................................1911.001.000.000.000.000.00
droWil1
AATATCAAT--------TTTGCTG---------TTTT------TT-T-TCGATACCAAAATTGAATGATGAACAG---------------------GCACCTGACA---------ACT-----------TGGATGCGGGGGA-----AATACTATATATGATTTTAACATTCTA-----------------------------CCCCA----------------T-----CATCATCA-----TCAAGCATCCGACGCGTCGCCGCTGT---------TTGCCATTSizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
................................................................................................................................................................................................................................T-----CATCATCA-----TCxAGCATCAG................................1911.000.000.000.001.00
...............................................................................................................................................................................................................A----------------T-----CATCATCA-----TCAACCATCA.................................2011.000.000.001.000.00
..........................................................................................................................................................................................................................................ATCA-----TCAAGxATCGGACGC............................1811.000.000.001.000.00
............................................................TTGAATGATGAACAG---------------------GCACCTGACA---------A..........................................................................................................................................................................2611.000.000.000.001.00
..............................................................................................................................................................................................................CA----------------T-----CATCATCA-----TCxATCATC..................................1911.000.001.000.000.00
droVir3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
droMoj3
TTTTTCTTCTTCTTCAT--------TTGG--GGCTCG------TG-T-CGGGCACCAGAATTGAATGATTTGTGA---------------------CTGACAGCAGCA-GCGGCGGGCCCCAAGGATGCGGGATATGGGTGATGGGGTATGCGTGACGAG-CAGCGATGCGGGAT--------GGATGGAGCTGCGTGGCAGAGTACACGTCGCATCGGATACGGATG-ACAGCGCTA-----CAACGGCGCCAAAGCC-ATT-----------------------SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
...................................................................................................................................GATATGGGAGATGGGCT..........................................................................................................................................1711.000.001.000.000.00
..............................................................................................................................TGCGGGATATGGGTGCAG..............................................................................................................................................1811.001.000.000.000.00
...................................................................................................................................GATATGGTAGATGGGGTA.........................................................................................................................................1811.000.001.000.000.00
............................................................................................................................GATGCGGGCTATTGGTGA................................................................................................................................................1811.001.000.000.000.00
droGri2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormV109
Male body

12-way Secondary Structure

dm3 droSim1 droSec1 droYak2 droEre2 droAna3 dp4 droPer1 droWil1 droVir3 droMoj3 droGri2
RNAfold Image None None
UNAFold Image None None

20-way Secondary Structure

dm3 droSim1 droSec1 droYak2 droEre2 droEug1 droBia1 droTak1 droEle1 droRho1 droFic1 droKik1 droAna3 droBip1 dp4 droPer1 droWil1 droVir3 droMoj3 droGri2
RNAfold Image
UNAFold Image

Generated: 04/20/2012 at 05:23:05 EDT