dme-mir-4969- 12- and 20-way alignments

dme-mir-4969	chr3R:17624235-17624393 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 17624350-17624373
   star strand at position 17624257-17624278
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3R:17624220-17624408 -	TtTtTtTtTGTTTTTGTATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCT-GCCATTGTTT-GGTTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGATGCG-AgtTgtTgtTttTttTgtTgGggTTT
droSim1	chr3R:17429869-17430049 -	TGTTTTTG--------TATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGTTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTAAATCAATA-----CCACCCCGCCGAAGCG-AgtTgtTgtTttTttTgtTgGggTGg
droSec1	super_0:17996591-17996759 -	TGTTTTTt--------TtTGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGTTGATAAGGAAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAAGCG-AgtTg------------tTgGggTTT
droYak2	chr3R:18444204-18444377 -	G---------------TATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGCTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCCCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAACCG-AgtTgtTgtTttTttTgtTgGggtGg
droEre2	scaffold_4820:10462897-10463070 +	G---------------TATGAATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGCTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCCCTGTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAACCG-AgtTgtTgtTtGTttTgtTgGggtTg
droAna3	Unknown	TACTT----------------ATTTCTCGGCG-GGATACGGCC--T------CTCGTAAATTGAATGATGAGCAG---------------------GAGGATGTCGCCTGCCATTGTTT-GGGAGATAAGGCACCCAGGGGCTGGGAACTATTACCTGGA-CGGGGAAACGGGATCCTGGCGGAGTCGGG----------------AG----------------CCTGTCAATCAATGGGATGCCACC--GCCACCGCC-A-----------------------TC
dp4	chr2:6481318-6481369 -	TTTGGCTTTTTCCTTTT--------CCGT--AACCTT------TT-CCT----CG-------AAATGCGGAGTGG---------------------GG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA
droPer1	Unknown	TTTTTTCCC-----TGTGCGGACTCTC-------------------ACC----CAACAAATTGAATGATGAACAGAGCCCGGCTGACAACAACAAGGATGATGTCGCT-GCCATTGTTC-GCCCGATAAGGGAGC-TGGCA------ACTATTACCTGGGTCGGGGGCGGGCGGTGGTGGTGGAGATGGG----------------A------------------CTGTCAATCAATA-----TGCCCC-------------------------------------
droWil1	scaffold_181130:11673057-11673207 -	AATATCAAT--------TTTGCTG---------TTTT------TT-T-TCGATACCAAAATTGAATGATGAACAG---------------------GCACCTGACA---------ACT-----------TGGATGCGGGGGA-----AATACTATATATGATTTTAACATTCTA-----------------------------CCCCA----------------T-----CATCATCA-----TCAAGCATCCGACGCGTCGCCGCTGT---------TTGCCATT
droVir3	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:17209927-17210133 -	TTTTTCTTCTTCTTCAT--------TTGG--GGCTCG------TG-T-CGGGCACCAGAATTGAATGATTTGTGA---------------------CTGACAGCAGCA-GCGGCGGGCCCCAAGGATGCGGGATATGGGTGATGGGGTATGCGTGACGAG-CAGCGATGCGGGAT--------GGATGGAGCTGCGTGGCAGAGTACACGTCGCATCGGATACGGATG-ACAGCGCTA-----CAACGGCGCCAAAGCC-ATT-----------------------
droGri2	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3R:17624220-17624408 -	NA	TATATATATGTTTTTGTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCT---------GCCATTGTTTGGTT-GATAA--GGG-----AGCCTGGC-----------------------------------------------------------------------------------------GCACTATTACCTG---------GCTCTCTG-------------------------------------------------------AAACGAGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGATG-------------------CGACATCATCATAATAATCATCGCCTTT
droSim1	chr3R:17429869-17430050 -	83	TGTTTTT--------GTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCA---------GCCATTGTTTGGTT-GATAA--GGG-----AGCCTGGC-----------------------------------------------------------------------------------------GCACTATTACCTG---------GCTCTCTG-------------------------------------------------------AAACGAGAGCCCA-------------CCTGTAAATCAATACCACCCCGC----CGAAG-------------------CGACATCATCATAATAATCATCGCCTGC
droSec1	super_0:17996591-17996767 -	110	TATATATATGTTTTTATATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCA---------GCCATTGTTTGGTT-GATAA--GGA-----AGCCTGGC-----------------------------------------------------------------------------------------GCACTATTACCTG---------GCTCTCTG-------------------------------------------------------AAACGAGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGAAG-------------------CGACA------------TCATCGCCTTT
droYak2	chr3R:18444204-18444378 -	87	---------------GTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCA---------GCCATTGTTTGGCT-GATAA--GGG-----AGCCTGGC-----------------------------------------------------------------------------------------GCACTATTACCTG---------GCCCTCTG-------------------------------------------------------AAACGAGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGAAC-------------------CGACATCATCATAATAATCATCGCCAGC
droEre2	scaffold_4820:10462895-10463063 +	64	TG--------------TATGAATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCA---------GCCATTGTTTGGCT-GATAA--GGG-----AGCCTGGC-----------------------------------------------------------------------------------------GCACTATTACCTG---------GCCCTGTG-------------------------------------------------------AAACGAGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGAAC-------------------CGACATCATCATAGTAATCAT-------
droEug1	scf7180000409490:922102-922283 -	145	TT-------------GTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCC--------TGCTATTGTTCGGTT-GATAA--GGG-----AGCCTGGC------------------------------------------------------------------------------------------AACTATTACCTG---------GCGC--TG-------------------------------------------------------AAACGGGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGCATCAACATCATCGAACCACACCGACATCATCATAAT------------A
droBia1	scf7180000302402:6490942-6491130 +	31	TTTATTT--------GTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------TGAGTGGG----------------AG--------------------------------------GATGTCGCC--------TGCCATTGTTCGGCC-GATAA--GGG-----AGCCTGCC------------------------------------------------------------------------------------------AACTATTACCTG---------GCGC--TG-------------------------------------------------------AAACGGGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGCATCAGCA----------GCAACGACACCATCATAATAATCACCGTCATC
droTak1	scf7180000415659:190736-190910 -	37	TATATATATTT--------------TTTAG------------------TAATTCGATCGG---------------------------------------------------------------------------------------------------------------------------------CCG--GTG-----GGCCTTGC--TTATATCTATAGCCATTGTGAAAGTACATCTCGAACTGTCCGCCTGTC---------------------------------------ACTCAGTCAATTG---------ATTTTCCG-------------------------------GTACCCACGGCACACTTGAC----ATGCATACAG--------------------------CGTGCT--------------------------GC---T------CATCATCATCATCATCATCATCATC
droEle1	scf7180000491212:2052035-2052195 -	385	AT---ATATATTTTTGTATGGATTATTCGGCGTGGC----------AGTAAATTGAATGA------------------------------CGAGTGGG----------------AG--------------------------------------GATGTCGCT---------GCCATTGTTCGCCT-GATAA--GGG-----AGCCGGGC-----------------------------------------------------------------------------------------CAACTATTACCTG---------GCGCGCTG-------------------------------------------------------AAACGGGAGCCCA-------------CCTGTCAATCAATACCACACCGC----CGCATC---------------------------------------------A
droRho1	scf7180000767859:662-810 +	3	TTT------------GTATGGATTTTTCGGCGTGGC----------GGTAAATTGAATGA------------------------------CGAGCGGG----------------AG--------------------------------------GATATCGCT---------GCCATTGTTCGGCT-GATAA--GGG-----AGCCGGGC------------------------------------------------------------------------------------------AACTATTACCTG---------GCGC--TG-------------------------------------------------------AAACGGGAGCCCA-------------CCTGTCAATCAATACCACCCCGC----CGCATC---------------------------------------------A
droFic1	scf7180000454106:760656-760852 -	77	CT-------------GTATGGATTTTTCGGCGTGGCGT--------GGTAAATTGAATGATGAGTGGGTA--------------------TG--GGAGTGGGAGTGGCAGTGGGGG--------------------------------------GATGTCGCA---------GCCATTGTTCGGCT-GATAA--GGG-----AGCCGGGC--A----------------------------------------------------------------------------GG--------CAACTATTACCTG---------CCGC--TG-------------------------------------------------------GAACGGGAGTCCG-------------CCTGTCAATCAATACCACCCCGC----GGCATCATC-----------GCACCGACA---------------TCATCGTC
droKik1	scf7180000302344:1257937-1258077 -	71	TATATATATACTAATGTATATATTTAGCCAACAGG-------------------------------------------------------------------------------GGGTTAACTTTCTTATCGATGG-TTTTCGAGCATTTAAAATTGGTTGCT-----------GATTGCTGTCTT-CAAAA--TAA-----AGCCCAGC-----------------------------------------------------------------------------------------TTAGGTTTAACTT---------GGTCTAAG---------------------------------------------------------------AGCCA----------------------------------------------------------------------------------------CCCT
droAna3	scaffold_13417:705028-705198 +	76	TGTATATGTGT--------GGGTGTAGAGGTGTGTA----------GGTGTGCAGGTGTA------------------------------CGGTTGTG----------------TG--------------------------------------TGTGTGGCATTCGTTGCTACTTATGTTT----AAGCTT--CGTATTTAAGCTTTTT-----------------------------------------------------------------------------------------GCACGATTTCC-------------TCTAAC-------------------------------------------------------AAATGGATTTTCA-------------CTTGTTG----------CCCAGCCAGACG-AA-------------------CGAAGCCATCACAAAAA----------T
droBip1	scf7180000396708:224669-224886 +	16	TTCTCGGCGGGATA-------------CGGCCTC-T----------CGTAAATTGAATGA------------------------------TGAGCAGA----------------AGGGTGGGGTTTGGGTGGGTGGACGGTCTGGCATGACAATGATGTCGCC--------TGCCATTGTTTGGGA-GATAA--GGG-----ACCCAGGGTCT----------------------------------------------------------------------------GG--------GAACTATTACCTG---------GTCGGGTG------GG--------------------------------------------GAGAAACGAGATCCTGGCGGAGTCGGGAGCCTGTCAATCAATGGGATGC-------------------------------------------CACCGCCGCCGCCAGT
dp4	chr4_group3:1192892-1193069 -	106	TATATGGCCT--------------ATCCAGCAGGAATTTATCCAGCGGATGGTAG--------CTAGAGA--------------------TG--CAGTTGG-------------AG--------------------------------------GGGGGC------------ACCATAGTTTGGAG-TAGC---------------------------------------------------------------------------------------------------------------CAAATGCCAG---------GCGA--TA-----------------------------AGGCATGAAAAATACAACTAAT----AAACATAAACCAG-------------TCTTCTTTTAAAAGCT--------------------------GC---T------CATCATCATCATCATCATGATCATC
droPer1	super_7:2291330-2291534 -	109	CATAAAAGGGTCTGAGTA---------------------------------TCTGAGCGT-----------------------------CTGGGTGGA----------------AC--------------------------------------CTCTGTGCT---------GCTAATGTTA-GCT-GATCCCT----------------------------------------------------------CTCCTCCCTCCCACTCGGTCCCTGCCCCCGCTCCCTTGGTGGCTGTTGCACTTTCCCCCG---------GGGCTCTG------------GAGTGTGCACACTTTTGGCA---------TA--A--TACAACAAAATTGATT-------------------------------------TGC----AG------------------------CATGCATCATTATCAACATCGTCGTT
droWil1	scaffold_181089:335812-335995 +	262	TTTTTTGAAATGTTTGTA--------AATGTGTGTG----------TGTTTGTGTGTGAA------------------------------GAAGAAT--------------G--TG-------------TGTATGTG-------------------------------------------CTGACT-AGTTCAATAA-----TGCCCA----------------------------------------------------------------------------------GAGAATGTTACAAGTTTAATGG---------AAGTTTTC------------A------------------------------------------AATAGAAAAGCTA-------------AAAGGAATTTAATTTTAGACATC----AGTTTCG--------AA---G------CATCGGCATCACAATCATCCCCATT
droVir3	scaffold_12963:15197471-15197651 +	448	TATATATATAGATATATATATATATA--------TA----------TGCT--GGGTTATA------------------------------TG--------------------------------------------------------------------------------ACTTTTGG-GTGCT-GATAAGA-GG-----CGTTCAGC--------------------------------------------------------TCAGTGCCAGAGCCC--------AGC-------GGCTAATTGACAGCCCCACGGGCCATGC--------------------------GGTTA---------AATTA------------AAACGAAAAATCA-------------TTTGCCAGC---------------------AGCAACAGCAGC-AGCAGCAGCGGCAGCAGC-----------------A
droMoj3	scaffold_6496:7093711-7093898 -	2013	TAGCAACTCGTTTCTGTT----------------GC----------TGTATGTGTAGCTG------TAGCTGTATCTGTAGCTGTATCTGTGGCTGT--------------A--TC-------------TGTATCTG-------------------------------------------GCAGCT-GGCAG--CAG-----TAGCTGGT------------------------------------------------------------------------------------------AGCTGCTGCTGG---------CTCTGTTG------CTGCCAGAGTATCTGTATCTGTGGCGCGTCAT---------------------------------------------TGTTG--------------------TGCGT-------------------TGCCGTTGCCATCGTAACCAACGCCGTC
droGri2	scaffold_15126:1496468-1496644 -	2008	TACATCCACATCGCTGCT--------TCGGCTTATG------TTGTGGTAAGTCATTAGA------------------------------TG--CAGA----------------TG--------------------------------------ATTGGCGTC---------ATCATCGCCTGCTTCCACAT--CAT-----AGTCAAGG-----------------------------------------------------------------------------------------GTATTCTTTTCTG---------CCGT--CTCAATGAGCGCTAGCG--------CCGATGAGATATCAA-----------------------------------------------------CGAGGT--------------------------GC---T------CTTCATCATCATCATCATCGTCATC

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TtTtTtTtTGTTTTTGTATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCT-GCCATTGTTT-GGTTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGATGCG-AgtTgtTgtTttTttTgtTgGggTTT

Size

Hit Count

Total Norm

droSim1

TGTTTTTG--------TATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGTTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTAAATCAATA-----CCACCCCGCCGAAGCG-AgtTgtTgtTttTttTgtTgGggTGg	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....................................................CGGTAAATTGAATGATGAGGGG---------------------G.............................................................................................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
.....................................................CGGTAAATCGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00

droSec1

TGTTTTTt--------TtTGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGTTGATAAGGAAGCCTGGCGC-----ACTATTACCTGGCTCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAAGCG-AgtTg------------tTgGggTTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................................................CGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	198.00	12.00	9.00	177.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	138.00	3.00	122.00	13.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	52.00	7.00	12.00	33.00
......................................................GGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	23	1	12.00	4.00	4.00	4.00
.....................................................CGGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................	21	1	10.00	0.00	2.00	8.00
.....................................................CGGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................	20	1	8.00	0.00	0.00	8.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCACC......................................	22	1	4.00	0.00	4.00	0.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GAT...........................................................................................................................................................................................	25	1	4.00	0.00	1.00	3.00
...................GGATTTTTCGGCG-------------T-----GGCGG......................................................................................................................................................................................................................................	19	1	4.00	1.00	3.00	0.00
......................................................GGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	22	1	3.00	1.00	0.00	2.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GT............................................................................................................................................................................................	24	1	3.00	2.00	0.00	1.00
.....................................................CGGTAAATTGAATGATGAG......................................................................................................................................................................................................................	19	1	3.00	0.00	0.00	3.00
.....................................................TGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	2.00	0.00	2.00	0.00
.....................................................CGGTAAATTGAGTGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	2.00	1.00	1.00	0.00
.......................................................GTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	22	1	2.00	0.00	2.00	0.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCACT......................................	22	1	2.00	0.00	2.00	0.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------A.............................................................................................................................................................................................	23	1	2.00	0.00	0.00	2.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------T.............................................................................................................................................................................................	23	1	2.00	0.00	1.00	1.00
.....................................................CGGTAAATTGAATGATGAGCGG---------------------..............................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
.....................................................CTGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
........................................................TAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00
....TTTA--------TATGGATTTTTCGGCG-------------T-----GG.........................................................................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GC............................................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GTC...........................................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------GA............................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00
..TTTTTT--------TTTGGxTTTTTGGG................................................................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00
......................................................GGTAAATTGAATGATGAGTGG---------------------GC............................................................................................................................................................................................	23	1	1.00	0.00	1.00	0.00
.....................................................CGGTAAATTGAATGATGAGCGG---------------------GA............................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00
.............................................T-----GGCGGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................	24	1	1.00	1.00	0.00	0.00
.....................................................CGGTAAATTGAATGATGAATGG---------------------G.............................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00
.....................................................CGGTAAATTAAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
....................................................GCGGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00
.........................................................AAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00
.....................................................AGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
.....................................................CGGTAAATTGAATGATTAGTGG---------------------..............................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
...........................................................................................................................................................................................................................................................CTGAAGCG-AGTGG------------TTGGG....	18	1	1.00	0.00	0.00	1.00
.....................................................CGGTAAAATGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
.................................................................................................................TGGTTT-GCTTGATAAGGA..........................................................................................................................................................	18	1	1.00	0.00	0.00	1.00
.....................................................CGGTAACTTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00
................................................................................................................ATTGTTT-GGTTGATAAGGAAGCCTG....................................................................................................................................................	25	1	1.00	0.00	1.00	0.00
............................................................TTGAATGATGAGTGG---------------------GAGGATG.......................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
.....................................................CGTTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00
......................................................GGTAAATTGAACGATGAGTGG---------------------..............................................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00
.....................................................CGGTAAATTGAATGATGAGGGG---------------------GA............................................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------..............................................................................................................................................................................................	22	1	1.00	1.00	0.00	0.00
........................................................TAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00
.....................................................CGTTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00
......................................................CGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
.....................................................CGGTACATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
.....................................................CGGTAAATTGAATGATGCGTGG---------------------G.............................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00
......................................................CGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00
.........................................................AAATTGAATGATGAGTGG---------------------GT............................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00
.....................................................CGGTAAATTGAATAATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	1.00	0.00	1.00	0.00
.....................................................TGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00

droYak2

G---------------TATGGATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGCTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCCCTCTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAACCG-AgtTgtTgtTttTttTgtTgGggtGg	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................................CGGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	625.00	21.00	71.00	84.00	303.00	146.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	624.00	8.00	39.00	123.00	215.00	239.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	439.00	173.00	16.00	72.00	82.00	96.00
.....................................................CGGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................	20	1	142.00	0.00	8.00	13.00	55.00	66.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GAA...........................................................................................................................................................................................	25	1	44.00	0.00	2.00	1.00	2.00	39.00
.....................................................CGGTAAATTGAATGATGAG......................................................................................................................................................................................................................	19	1	41.00	0.00	4.00	4.00	15.00	18.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCACC......................................	22	1	39.00	33.00	0.00	0.00	0.00	6.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GT............................................................................................................................................................................................	24	1	32.00	0.00	4.00	1.00	18.00	9.00
......................................................GGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	23	1	25.00	3.00	1.00	12.00	9.00	0.00
.....................................................CGGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................	21	1	18.00	1.00	2.00	1.00	11.00	3.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GG............................................................................................................................................................................................	24	1	12.00	0.00	0.00	0.00	1.00	11.00
....................................................GCGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	23	1	8.00	1.00	0.00	0.00	3.00	4.00
.....................................................CGGTAAATTGAATGATGAGG.....................................................................................................................................................................................................................	20	1	8.00	0.00	0.00	0.00	0.00	8.00
.....................................................CGGTAAATTGAATGATGAGTGT---------------------G.............................................................................................................................................................................................	23	1	8.00	0.00	2.00	0.00	6.00	0.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GC............................................................................................................................................................................................	24	1	7.00	2.00	0.00	0.00	3.00	2.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------T.............................................................................................................................................................................................	23	1	6.00	0.00	1.00	0.00	5.00	0.00
.......................................................GTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	22	1	6.00	1.00	0.00	3.00	2.00	0.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GAT...........................................................................................................................................................................................	25	1	6.00	1.00	0.00	1.00	2.00	2.00
.....................................................CGGTAAATTGAATGATGAGTGT---------------------..............................................................................................................................................................................................	22	1	6.00	0.00	0.00	1.00	5.00	0.00
.....................................................CGGTAAATTGACTGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	5.00	0.00	0.00	0.00	5.00	0.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------G.............................................................................................................................................................................................	23	1	5.00	0.00	0.00	0.00	4.00	1.00
.....................................................CGGCAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	5.00	0.00	0.00	0.00	5.00	0.00
.....................................................CGGCAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	5.00	0.00	1.00	0.00	4.00	0.00
......................................................GGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	22	1	5.00	0.00	1.00	0.00	4.00	0.00
.....................................................CGGTAAATTGAATGATGAGTTG---------------------..............................................................................................................................................................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
........................................................TAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	21	1	4.00	0.00	0.00	4.00	0.00	0.00
.....................................................CGGTAAATTGAATGATGAGC.....................................................................................................................................................................................................................	20	1	4.00	0.00	0.00	1.00	0.00	3.00
.....................................................CGGAAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	3.00	0.00	0.00	0.00	2.00	1.00
.....................................................CGGTAAATTGAATGCTGAGTGG---------------------..............................................................................................................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------A.............................................................................................................................................................................................	23	1	3.00	0.00	1.00	0.00	2.00	0.00
.....................................................CGGGAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	3.00	0.00	0.00	0.00	2.00	1.00
.....................................................CGGTAAATTGAATGATGAGTTG---------------------G.............................................................................................................................................................................................	23	1	3.00	0.00	1.00	0.00	2.00	0.00
.....................................................CGGTAAATTGAGTGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	3.00	1.00	0.00	0.00	2.00	0.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCACT......................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00

droEre2

G---------------TATGAATTTTTCGGCG-------------T-----GGCGGTAAATTGAATGATGAGTGG---------------------GAGGATGTCGCA-GCCATTGTTT-GGCTGATAAGGGAGCCTGGCGC-----ACTATTACCTGGCCCTGTGAAACGAGA-----------------------------GCCCA----------------CCTGTCAATCAATA-----CCACCCCGCCGAACCG-AgtTgtTgtTtGTttTgtTgGggtTg	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................................................CGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	9588.00	11.00	217.00	0.00	9360.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	5037.00	38.00	326.00	0.00	4673.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	2136.00	143.00	105.00	0.00	1888.00
.....................................................CGGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................	21	1	1364.00	5.00	41.00	0.00	1318.00
.....................................................CGGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................	20	1	1225.00	0.00	48.00	0.00	1177.00
.....................................................CGGTAAATTGAATGATGAG......................................................................................................................................................................................................................	19	1	616.00	0.00	17.00	0.00	599.00
......................................................GGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	23	1	246.00	5.00	7.00	0.00	234.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GT............................................................................................................................................................................................	24	1	150.00	0.00	4.00	0.00	146.00
.....................................................CGGTAAATTGAATGATGAGTGT---------------------..............................................................................................................................................................................................	22	1	127.00	0.00	8.00	0.00	119.00
.....................................................CGGTAAATTGAATGATGAGTTG---------------------G.............................................................................................................................................................................................	23	1	110.00	0.00	1.00	0.00	109.00
.....................................................CGGTAAATTGAATGATTAGTGG---------------------..............................................................................................................................................................................................	22	1	101.00	0.00	0.00	0.00	101.00
.....................................................AGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	100.00	0.00	0.00	0.00	100.00
.....................................................CGGTAAATTGAATGATGAGTTG---------------------..............................................................................................................................................................................................	22	1	90.00	0.00	0.00	0.00	90.00
.....................................................CGGTAAATTGAATGATGAGTGA---------------------..............................................................................................................................................................................................	22	1	85.00	0.00	4.00	0.00	81.00
.....................................................CTGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	78.00	0.00	0.00	0.00	78.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------T.............................................................................................................................................................................................	23	1	78.00	0.00	4.00	0.00	74.00
......................................................GGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	22	1	76.00	0.00	6.00	0.00	70.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCACC......................................	22	1	67.00	16.00	2.00	0.00	49.00
......................................................GGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	21	1	62.00	0.00	2.00	0.00	60.00
.....................................................CGGTAAATTTAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	59.00	0.00	0.00	0.00	59.00
.....................................................CGGTAAATTGAATTATGAGTGG---------------------..............................................................................................................................................................................................	22	1	56.00	0.00	0.00	0.00	56.00
.....................................................CGGTAAATTGAATGATGAGTTG---------------------GA............................................................................................................................................................................................	24	1	54.00	3.00	0.00	0.00	51.00
.....................................................CGGTAAATTGAATGATTAGTGG---------------------G.............................................................................................................................................................................................	23	1	48.00	1.00	0.00	0.00	47.00
.....................................................CTGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	48.00	0.00	0.00	0.00	48.00
.....................................................AGGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	45.00	0.00	0.00	0.00	45.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------A.............................................................................................................................................................................................	23	1	44.00	0.00	1.00	0.00	43.00
.....................................................CGTTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	44.00	0.00	0.00	0.00	44.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------C.............................................................................................................................................................................................	23	1	40.00	0.00	2.00	0.00	38.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GAT...........................................................................................................................................................................................	25	1	35.00	0.00	2.00	0.00	33.00
....................................................GCGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	23	1	35.00	0.00	2.00	0.00	33.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------G.............................................................................................................................................................................................	23	1	34.00	0.00	4.00	0.00	30.00
.....................................................CGGTAAATTGAATGATGAGTGT---------------------GA............................................................................................................................................................................................	24	1	32.00	6.00	3.00	0.00	23.00
.....................................................CGTTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	31.00	0.00	1.00	0.00	30.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------..............................................................................................................................................................................................	22	1	31.00	0.00	1.00	0.00	30.00
.....................................................CGGTAAATTGAATGATGAGTGT---------------------G.............................................................................................................................................................................................	23	1	29.00	1.00	10.00	0.00	18.00
.....................................................CGGCAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	28.00	0.00	0.00	0.00	28.00
.....................................................CGGTAAATTTAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	27.00	0.00	0.00	0.00	27.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------TA............................................................................................................................................................................................	24	1	26.00	3.00	0.00	0.00	23.00
.....................................................CGGTAAATTGAATGATTAGTGG---------------------GA............................................................................................................................................................................................	24	1	25.00	2.00	1.00	0.00	22.00
.....................................................CTGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	24.00	0.00	0.00	0.00	24.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------CA............................................................................................................................................................................................	24	1	24.00	0.00	0.00	0.00	24.00
.....................................................CGGTAAATTGAATGATTAGTG....................................................................................................................................................................................................................	21	1	20.00	0.00	0.00	0.00	20.00
.......................................................GTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	20	1	20.00	0.00	1.00	0.00	19.00
.......................................................GTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	22	1	19.00	0.00	0.00	0.00	19.00
.....................................................CGGTAAATTAAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	19.00	0.00	0.00	0.00	19.00
.......................................................GTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	21	1	19.00	0.00	1.00	0.00	18.00
.....................................................CGATAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	17.00	0.00	0.00	0.00	17.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GAA...........................................................................................................................................................................................	25	1	17.00	0.00	1.00	0.00	16.00
.............................................................................................................................................................................................................CCA----------------CCTGTCAATCAATA-----CCAC.......................................	21	1	17.00	1.00	2.00	0.00	14.00
.....................................................AGGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................	21	1	17.00	0.00	0.00	0.00	17.00
.....................................................AGGTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	17.00	0.00	0.00	0.00	17.00
.....................................................TGGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	16.00	0.00	0.00	0.00	16.00
.....................................................CGGTAAATTTAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	16.00	1.00	0.00	0.00	15.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GC............................................................................................................................................................................................	24	1	16.00	2.00	3.00	0.00	11.00
.....................................................TGGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	16.00	0.00	2.00	0.00	14.00
.....................................................CGGTAAATTGAATTATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	15.00	0.00	0.00	0.00	15.00
.....................................................CGGTAAATTTAATGATGAGTG....................................................................................................................................................................................................................	21	1	14.00	0.00	0.00	0.00	14.00
........................................................TAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	20	1	13.00	0.00	0.00	0.00	13.00
.....................................................CGGCAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	13.00	0.00	3.00	0.00	10.00
.....................................................CGGTAAATTGAGTGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	13.00	0.00	0.00	0.00	13.00
.....................................................CGCTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	13.00	0.00	0.00	0.00	13.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------AA............................................................................................................................................................................................	24	1	13.00	0.00	0.00	0.00	13.00
.....................................................CGGTAAATTGAATGATGAGCGG---------------------..............................................................................................................................................................................................	22	1	13.00	0.00	0.00	0.00	13.00
.....................................................CCGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	12.00	0.00	1.00	0.00	11.00
......................................................GGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................	20	1	12.00	0.00	0.00	0.00	12.00
.....................................................CGGAAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	12.00	0.00	0.00	0.00	12.00
.....................................................CGGTAAATTGAATGATTAGT.....................................................................................................................................................................................................................	20	1	12.00	0.00	0.00	0.00	12.00
.....................................................CGGTAAATTGAATGGTGAGTGG---------------------..............................................................................................................................................................................................	22	1	11.00	0.00	0.00	0.00	11.00
.....................................................CTGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................	20	1	11.00	0.00	0.00	0.00	11.00
.....................................................CGTTAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	10.00	3.00	0.00	0.00	7.00
.....................................................CGGTAAATTGAATGATAAGTGG---------------------..............................................................................................................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
.....................................................CGGTAAATTGAATTATGAGTGG---------------------GA............................................................................................................................................................................................	24	1	10.00	0.00	0.00	0.00	10.00
.....................................................CGATAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	10.00	0.00	1.00	0.00	9.00
.....................................................CGGTAAATTGAATGATTAG......................................................................................................................................................................................................................	19	1	10.00	0.00	0.00	0.00	10.00
.....................................................CGGTxAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	21	1	10.00	0.00	0.00	0.00	10.00
.....................................................CGGTAAATTGAATGATGAGGGG---------------------..............................................................................................................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
.....................................................CGGTAAACTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
.....................................................CAGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
.....................................................CGGTAAATTGAATGATGA.......................................................................................................................................................................................................................	18	1	10.00	0.00	0.00	0.00	10.00
.....................................................CGCTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	10.00	0.00	0.00	0.00	10.00
.....................................................CGGTAAATTGAATGATGGGTGG---------------------..............................................................................................................................................................................................	22	1	10.00	0.00	1.00	0.00	9.00
.....................................................CGGTAAATTAAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	10.00	0.00	1.00	0.00	9.00
.....................................................CGGTAAGTTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	10.00	0.00	1.00	0.00	9.00
.....................................................CGGTAAATTGAATGATGACTGG---------------------..............................................................................................................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
.....................................................CGGTAAATTGAATAATGAGTGG---------------------..............................................................................................................................................................................................	22	1	9.00	0.00	0.00	0.00	9.00
.....................................................CGGTAAATCGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	9.00	0.00	0.00	0.00	9.00
.....................................................CGGTAAATTGAATGATGAGTAG---------------------..............................................................................................................................................................................................	22	1	9.00	0.00	2.00	0.00	7.00
.....................................................CGGTAAATTGAATGATGATTGG---------------------GA............................................................................................................................................................................................	24	1	9.00	3.00	0.00	0.00	6.00
.....................................................CGGTAAATTTAATGATGAGT.....................................................................................................................................................................................................................	20	1	9.00	0.00	0.00	0.00	9.00
.....................................................CTGTAAATTGAATGATGAGTG....................................................................................................................................................................................................................	21	1	9.00	0.00	0.00	0.00	9.00
.....................................................AGGTAAATTGAATGATGAGT.....................................................................................................................................................................................................................	20	1	9.00	0.00	1.00	0.00	8.00
........................................................TAAATTGAATGATGAGTGG---------------------GA............................................................................................................................................................................................	21	1	9.00	0.00	0.00	0.00	9.00
.....................................................CGGTAAATTGAATGACGAGTGG---------------------..............................................................................................................................................................................................	22	1	9.00	0.00	0.00	0.00	9.00
.....................................................CGGAAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	23	1	8.00	0.00	2.00	0.00	6.00
.....................................................CGGTAAATTGAATGCTGAGTGG---------------------..............................................................................................................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
.....................................................CGGTAAATTGAATGATGAGTGG---------------------GTT...........................................................................................................................................................................................	25	1	8.00	0.00	0.00	0.00	8.00
......................................................CGTAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	21	1	8.00	0.00	0.00	0.00	8.00
.....................................................CGGTAAATTGAATGCTGAGTGG---------------------G.............................................................................................................................................................................................	23	1	8.00	0.00	1.00	0.00	7.00
.....................................................CGGTAAATTGAATGATGAGTGA---------------------G.............................................................................................................................................................................................	23	1	8.00	0.00	0.00	0.00	8.00
.....................................................CGGGAAATTGAATGATGAGTGG---------------------..............................................................................................................................................................................................	22	1	8.00	0.00	1.00	0.00	7.00
.....................................................CGGTAAATTGAATGGTGAGTGG---------------------G.............................................................................................................................................................................................	23	1	8.00	0.00	1.00	0.00	7.00

droAna3

TACTT----------------ATTTCTCGGCG-GGATACGGCC--T------CTCGTAAATTGAATGATGAGCAG---------------------GAGGATGTCGCCTGCCATTGTTT-GGGAGATAAGGCACCCAGGGGCTGGGAACTATTACCTGGA-CGGGGAAACGGGATCCTGGCGGAGTCGGG----------------AG----------------CCTGTCAATCAATGGGATGCCACC--GCCACCGCC-A-----------------------TC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.......................TTCTCGGTG-GGATACGGTC--.................................................................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
......................................................................................................................T-GGGGGATAAGGGACCC......................................................................................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
......................................................CGTAAATTGAATGATGAGTGG---------------------G.............................................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................CGGTAAATTGAATGATGAG......................................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................................................................................................................CAATCACTGGGATGACAC.......................................	18	1	1.00	0.00	1.00	0.00	0.00
................................................................ATGATGATAAG---------------------GAGGAT........................................................................................................................................................................................	17	1	1.00	0.00	0.00	1.00	0.00

dp4

TTTGGCTTTTTCCTTTT--------CCGT--AACCTT------TT-CCT----CG-------AAATGCGGAGTGG---------------------GG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

TTTTTTCCC-----TGTGCGGACTCTC-------------------ACC----CAACAAATTGAATGATGAACAGAGCCCGGCTGACAACAACAAGGATGATGTCGCT-GCCATTGTTC-GCCCGATAAGGGAGC-TGGCA------ACTATTACCTGGGTCGGGGGCGGGCGGTGGTGGTGGAGATGGG----------------A------------------CTGTCAATCAATA-----TGCCCC-------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
......................................................................................................................................................................GCGGGTGTTGGTGGTGGA......................................................................................................	18	1	4.00	4.00	0.00	0.00	0.00	0.00
................................................................................................................................................................TAGGGGGCGGGCGGTGTT............................................................................................................	18	1	2.00	0.00	0.00	0.00	2.00	0.00
...........................................................ATTGAATGATGAACAGAGCCC..............................................................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................................................................................................................................GGTGGTGGTGGGGAAGGG----------------A------------------.............................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................................................................................................TGGGGGGCGGGCGGTGTT............................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................................................................AACAAGGATGTTGTCGTT-.................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................................................................................................................................GAGGGCGGTGGTGGTGGAGG....................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................................................................GGGGGCGGAGGGTGGTGG..........................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................GTGGGCGGGTGGTGGTGGTGG.......................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.............................................................................................................................AAAAGGGAGC-TGCCA------ACT........................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................................................................................................................................................GCGGTGGTGGTGGAGGAGG.................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................................................................................................GTGGGxGGTGGTGGTGGAG.....................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................GGGGGTGGGGGGTGGTGG..........................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................................................................................TGGGCGGGCGGTGGTGGG.........................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................................................................GCGGGCGGTCGxxGGTGGTGG.......................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................................................................................................GAGGGCGGTGGTGGTGGAG.....................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................................................................GGGGGCGGGCGGTGGTGGTGG.......................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................................................................................................GGTGGTGGTGGAGAGGGG----------------................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................................................................................................................................TGGGGGCGGGCGGGGGTG...........................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................................................................................................................TCGGGGGCGGGCGGTxGTGCTG........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................................................................................CTGGGGCGGGxGGTGGTGG..........................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................GGGGGTGGGAGGTGGTGG..........................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................................................................CGAGGATGAxGTCGCT-GCC..............................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................................................................................................................TGGGGGGCGGGCGGTGAT............................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................................................................................................GTGGGTCGAGGGCGGGCGG................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................................................................................................................................TGGGTCGGGGGCxGGCGGGG..............................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................................................................................................................GTGGTGGTGGGGAAGGG----------------A------------------C............................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00

droWil1

AATATCAAT--------TTTGCTG---------TTTT------TT-T-TCGATACCAAAATTGAATGATGAACAG---------------------GCACCTGACA---------ACT-----------TGGATGCGGGGGA-----AATACTATATATGATTTTAACATTCTA-----------------------------CCCCA----------------T-----CATCATCA-----TCAAGCATCCGACGCGTCGCCGCTGT---------TTGCCATT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................................................................................................................................................................................T-----CATCATCA-----TCxAGCATCAG................................	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................................................................................................................A----------------T-----CATCATCA-----TCAACCATCA.................................	20	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................................................................................................................................................ATCA-----TCAAGxATCGGACGC............................	18	1	1.00	0.00	0.00	1.00	0.00
............................................................TTGAATGATGAACAG---------------------GCACCTGACA---------A..........................................................................................................................................................................	26	1	1.00	0.00	0.00	0.00	1.00
..............................................................................................................................................................................................................CA----------------T-----CATCATCA-----TCxATCATC..................................	19	1	1.00	0.00	1.00	0.00	0.00

droVir3

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3

TTTTTCTTCTTCTTCAT--------TTGG--GGCTCG------TG-T-CGGGCACCAGAATTGAATGATTTGTGA---------------------CTGACAGCAGCA-GCGGCGGGCCCCAAGGATGCGGGATATGGGTGATGGGGTATGCGTGACGAG-CAGCGATGCGGGAT--------GGATGGAGCTGCGTGGCAGAGTACACGTCGCATCGGATACGGATG-ACAGCGCTA-----CAACGGCGCCAAAGCC-ATT-----------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...................................................................................................................................GATATGGGAGATGGGCT..........................................................................................................................................	17	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................................TGCGGGATATGGGTGCAG..............................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................................GATATGGTAGATGGGGTA.........................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
............................................................................................................................GATGCGGGCTATTGGTGA................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00

droGri2

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image										None		None
UNAFold Image										None		None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image