dme-mir-4962- 12- and 20-way alignments

dme-mir-4962	chrX:3671414-3671538 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 3671489-3671511
   star strand at position 3671441-3671464
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:3671399-3671553 +	TGTGT-----TTG-GTTGTttttcct-ttcttttctctccgtct-ctct-------ctttccct-----------------------ctctctGTTTACATTGAGC--TGTTTTGTCCGTGCACGTGCTAGACGATGTAGA--GAGTGAGGGAGAGAGCGAATAG-AATAACAGCTCA-TTGTGCTGAGCGCCCAGCCT
droSim1	chrX:2692027-2692181 +	TATGT-----TTG-GTTGTttttcct-ttcttttctctccgtct-ctct-------ctttccct-----------------------ctctctGTTTACATTGAGC--TGTTTTGTCCGTGCACGTGCTAGACGATGTAGA--GAGTGAGGGAGAGAGCGAATAC-AATAACAGCTCA-TTGTGCTGAGCGCCCAGCCT
droSec1	super_4:3031753-3031907 -	TATGT-----TTG-GTTGTTTTTCCT-TTCTTTTCTTTCCGTCT-CTCT-------CTTTCCCT-----------------------CTCTCTGTTTACATTGAGC--TGTTTTGTCCGTGCACGTGCTAGACGATGTAGA--GAGTGAGGGAGAGAGCGAATAC-AATAACAGCTCA-TTGTGCTGAGCGTCCAGCCT
droYak2	chrX:4740636-4740793 -	TGTGC-----TTG-GTTGTTTTTCCT-TTCTTTTCTCTCCGCCT-CTCT-------CTTTCCCT-----------------------CTCTCTGTTTACATTAAGC--GGTTTTGCCCGTGCACGTGCTAGACGATATAGAAAGAGAGAGGGAGAGAGCGAATAACAATAACAGCTCG-TTTTGCTGAGCGCCCAGCCT
droEre2	scaffold_4690:1061104-1061256 +	TGTGT-----TTG-GTTGTTTTTCCT-TTCTTTTCTCTCCGTC---TCT-------CATTCCCT-----------------------CTCTCTGTTTACATTAAGC--GGTTTTGCCTCTGCACGTGCTAGACGGTATAGA--GAGAGAGGGAGAGAGCGATTAC-AATAACAGCTCA-TTGTGCTGAGCGCCCAGCCT
droAna3	scaffold_13047:131925-132036 +	TTTTT-----TTT-G--------------------------------------------TGCTT-----------------------CTCTCTGTTTACATTAAAA--GGT--TGGCC--GCACGTGCTGTTCGATAGCAA--GAGAATGAGGGAGAGCGAG-CG-AGTGGCAGG-GA---TTGCTGCGCGCCGAGCCT
dp4	chrXL_group1e:8498309-8498374 -	TGTTTGTCTTTTG-Gttttttttttt-ttgttttttttt------ttgtgttttttcttCCACT-----------------------CTCTTTATTT------------------------------------------------------------------------------------------------------
droPer1	super_13:75157-75220 +	TGTTTGTCTTTTG-Gttttttttttg-ttttttttttttgtgtt-tttt-------cttCCTCT-----------------------CTCTTTATTT------------------------------------------------------------------------------------------------------
droWil1	scaffold_181096:11768950-11769080 +	TGTGC-----T---GTTGTCTTTtct-ctct---ctctctctct-ctct-------ttgtctctTTGCTCGATAGCTACTTTTGTGACTCTCTGTTTACATGGGG-AACATTTTGCACGTGTTCG----------------------------------------------CTGCTAT-CGCTGCTGTGCGCCCAGCAA
droVir3	scaffold_12970:6986931-6987010 +	TGTTG-----TT-ATTT-TTTTTTCT-TCAT-TTC-----GTTTTGTGT-------GTGTATTT-----------------------CTCTTTGTTTACATTG-GCAGTGCT----TCGTGCACGTGCT----------------------------------------------------------------------
droMoj3	scaffold_6473:12461043-12461147 +	TGTTG-----TT-A------TTTTTT-TTCTTTTC-----GTTTTGTGT-------GTGTGTTT-----------------------CTCTTTGTTTACATTA-GCGGCGCT----TCGTGCACGTGCT-GAT----------------------------------------GCTTTCTGCTGCTGTGCGCCCAGTAT
droGri2	Unknown	TGTTA-----TTTATTT-TTTTTTCTCTCGTTTTGCTTTT-----GTGT-------GTGTATTT-----------------------CTCTTTGTTTACATTC-GAAGCGCTTT----GTGCACGTGC-----------------------------------------------TCA-CTTTTCTGAGCGCCCAGCAT

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:3671399-3671553 +	NA	TGTGTTTGGTTGTTTTTC-------------CTT--------------------TCTTTTCTCTC----------------------CGTCTCTCTCTTTCCCT------CTCTCTGTTTACATTGAG-------CTGTTT--TGTCCGTGCACGTGCTA----------------------------------------------GAC-------GATGTA--GAGAGTGAGGGAGAG--AGC------GA---------------------ATA--GAATAA------CAGCTCATTG----------------------------TGCTGAGCGCC-CAGCCT
droSim1	chrX:2692027-2692181 +	303	TATGTTTGGTTGTTTTTC-------------CTT--------------------TCTTTTCTCTC----------------------CGTCTCTCTCTTTCCCT------CTCTCTGTTTACATTGAG-------CTGTTT--TGTCCGTGCACGTGCTA----------------------------------------------GAC-------GATGTA--GAGAGTGAGGGAGAG--AGC------GA---------------------ATA--CAATAA------CAGCTCATTG----------------------------TGCTGAGCGCC-CAGCCT
droSec1	super_13710:747-901 +	513	TATGTTTGGTTGTTTTTC-------------CTT--------------------TCTTTTCTTTC----------------------CGTCTCTCTCTTTCCCT------CTCTCTGTTTACATTGAG-------CTGTTT--TGTCCGTGCACGTGCTA----------------------------------------------GAC-------GATGTA--GAGAGTGAGGGAGAG--AGC------GA---------------------ATA--CAATAA------CAGCTCATTG----------------------------TGCTGAGCGTC-CAGCCT
droYak2	chrX:4740636-4740793 -	1479	TGTGCTTGGTTGTTTTTC-------------CTT--------------------TCTTTTCTCTC----------------------CGCCTCTCTCTTTCCCT------CTCTCTGTTTACATTAAG-------CGGTTT--TGCCCGTGCACGTGCTA----------------------------------------------GAC-------GATATAGAAAGAGAGAGGGAGAG--AGC------GA---------------------ATAAC-AATAA------CAGCTCGTTT----------------------------TGCTGAGCGCC-CAGCCT
droEre2	scaffold_4690:1061104-1061256 +	139	TGTGTTTGGTTGTTTTTC-------------CTT--------------------TCTTTTCTCTC----------------------CGT--CTCTCATTCCCT------CTCTCTGTTTACATTAAG-------CGGTTT--TGCCTCTGCACGTGCTA----------------------------------------------GAC-------GGTATA--GAGAGAGAGGGAGAG--AGC------GA---------------------TTA--CAATAA------CAGCTCATTG----------------------------TGCTGAGCGCC-CAGCCT
droEug1	scf7180000408900:80143-80285 -	933	TGTGTTTTTTTATTTGTT------------------------------------TCTTCTCTCTT----------------------TAGCTCTC----TCTCT------CTCTCTGTTTACATTAAG-------CGGTGT--CGGTCGTGCACGTGCTA----------------------------------------------AGT-------G----A--GAGAG--GGAGAGAG--AAC------GA---------------------ATAAC-AATAA------CAGCGTTTTA----------------------------TACTGAGCGCC-CAGCCT
droBia1	scf7180000302126:1424433-1424605 -	898	TGTGTTTTGTTGTTTCTT-------------TTCTCTCCTTGTCCCTCTC-------------CCCACC---------CGAAG----CTCCTCTCTCTTTCGCTCTCTCCTTCTCTGTTTACATTAAG-------CGGTTT--TGTACGTGCACGTGCTA----------------------------------------------AGT-------G----AGAGAGCGAGAGGGTCAG--AGC------GA---------------------AT----AACAA------CAGCGCCTGC----------------------------TGCTGAGCGCC-CAGCCT
droTak1	scf7180000415078:324534-324728 +	81	TTTTGTTGTTTTATTTTTTTTCTTTGTTTTT---TCTCCTGGTCCGCC--------CCTT---CCCTCCATCAGTCTGTGTATCTCGACTCTCTCTCTTTCGCT------CTCTCTGTTTACATTAAG-------CGGTTT--TGTACGTGCACGTGCTA----------------------------------------------AGT-------G----GGAGAGCGAGAGGGAGAG--AGC------GA---------------------GTAGC-AATAA------CAGCGCTTTC----------------------------TGCTGAGCGCC-CAGCCT
droEle1	scf7180000490996:923512-923682 +	216	TGTTTGTTGTTTTTCTTC-------------TTT--------------------TTTTTTCTTTC----------------------TCTCCCTCTCTCTCTTT------TTCTCTGTTTACATTAAG-------CGGTTTCTCGCCCGTGCACGTGCTATTCGT-------GAGTG-----------AG------------------C-------GAGATATAAAG--AGA-GGTTAG--AGCGTACACAA---------------------GC---GAATAA------CAGCGCTTTG----------------------------TGCTGAGCGCC-CAGCCT
droRho1	scf7180000776529:17170-17316 -	843	TGTTTGTTGTTTCTATTT-------------ATT--------------------T-TTTT------------------------------------CTCTCGTT------CTCTCTGTTTACATTAAG-------CGGTTTCTCGCCCGTGCACGTGCTATTCAT-------GTGTG-----------AG----------------CGA-------GAGATC--AAA--AGAGAGAGAG--AGC------G----------------------------AATAA------CAGCGCTTTG----------------------------TGCTGAGCGCC-CAGCCT
droFic1	scf7180000453901:800509-800654 -	1498	TTTATTTCTTTTCGTTTT-------------T-------------------------TTTTGTTT------------------------TCCCTCTC-TTCTCT------CTCTCTGTTTACATTAAG-------CAGTTT--TGCTCGTGCACGTGCTATT--------------------------------------------CAT-------GATTGA--GAGAACGAGAAAAAG--AGC------GC---------------------A-----AATAA------CAGAGCAATG----------------------------TGCTGAGCGCC-CAGCTT
droKik1	scf7180000302276:544719-544873 -	676	TGTTTTAGTGGCTCTCTC-------------CCT--------------------CCCATGCTCTC----------------------TTCCTCTCTCTCTCCCT------CTCTCTCTCTCTATCGGC-------G---TG--TGTGGGTGCGAGTCCCA----------------------------------------------AATAAAT---AGG-----CTACGAAAAATAATA--TGC------AA---------------------ACT--AATTAG--CA--CTTCCGTCAA----------------------------GCCCCAACGCC-AACGCA
droAna3	scaffold_13337:5571517-5571673 -	1012	TGTGTTTTTGTTTTTGTT-------------GTC--------------------TCTGTTTTCTT----------------------CGCCTTTTTTTT-------------C-TCATTTTTGTGGAGCTTTGCATGCCCG--GCTGCAGGAGTGTTAGT------------GAGTGGTTTGACTTGT-------------TTTGCGGC-------AGCAGG--CAGCACACGCGCTGC--TGT---------------------------------------------------CGCCG----------------------------TCGCCGCTGTC-TAGC--
droBip1	scf7180000396423:461403-461557 +	367	TACGTTTGTTTTTTTTTTTTTTACTATTTTT---TCTAA-------------------------A----------------------AG--TTACCCTTTTTAT------TTTTTTTTTTATATTTGG-------CATTCC--AATTACTAT-TGTCCTA----------------------------------------------GAA-------GGCCTA--AACGC-------------------------------------------------------------------TTTCCCTTGATTGATTGAGACCTACCAGCTCATGTAAGCCACT-TGTTTT
dp4	Unknown_group_658:20580-20732 -	1558	TACATTTTTCCACTTGCC-------------CACACTTTTCGCTGCGCTGCTCTCTCGCTC----------------------------TCTCTCTCTCTCATG------CTC-TCACTCTCAGAAAG-------CTGTGC--AAT--------GCACCA----------------------------------------------TGC----GACGACTGA--AAGCATGAGAGTGAGCCAGC------TT---------------------TCA--GTGTGG------CAGTTTTTTT----------------------------CGTTG-------------
droPer1	super_23:1560592-1560751 -	1106	GTTTCTCTGCCTCTCCCT-------------CTC--------------------T-CCCTCTCTC----------------------TCTCTCTCGCTGTCTTC------CTCTTTCTCAACTATGTG-------TGGCCA--TGTGTGTGTGTGTGTGT------------GTGTGGGTTGTATCTG------------------TGT-------G----TGAGAGCGAAGCGCAGAC--A---------A---------------------TTAGT-TTTAT------TATGCTTTGT-----------------------------------TGCCGAGCTTC
droWil1	scaffold_181096:11652056-11652210 +	1429	TCTGTTTGTGAGGGTCCC-------------TCT--------------------CTTTTACTCTC----------------------TGTCGCTCTCTCTCTCT------CTCGCGCTGCACAAAAAA-------ATTAGT--CA----TACCA----AA--AA-CAAAATA------------------------CAGATTGCAAAGC-------AATAGA--GAGAGAGAGGGAGAG--AGA------GA---------------GA----GT-------A---------AGTGAGTG----------------------------TG-AGAGCGCC-CA----
droVir3	scaffold_12855:8711965-8712121 +	451	TCTCTTTCTTTATTTCTC-------------TGCTTTT--CTCTG------------TCTCTCTTTATC------------------TGTATCTCTCTCTCTTT------CTCTCTATTTTCT-ATTGCT-----CTGTTA--TGTC-AAACATTTGCTG------------------------------------CATACTTTCAGGC-------GATATT--AAAAGCGTGCAAGAT--TTT------CA---------------------TTT--GTATAA------CTGCGTATT-----------------------------------------------
droMoj3	scaffold_6496:4311996-4312145 -	5906	TGTCTCTCTATTTCTCTC---------------T--------------------CTCTCTCTCTC----------------------TCTCTCTCTCTCTCTCT------CTCTCTGCCTGCCTTCA----------CTTT--TATACAAAAA--T---A----------------------------ATGGCCAT----------CAA-------AATTAA--TAAAAACGTAATCAG--AGC------GAATGACTACAGAGGAAAACGA-AAA--GTATAA------AAG----------------------------------------------------C
droGri2	scaffold_15203:9842081-9842230 +	3184	TCCCTTCTCTCTCTCTCT-------------C-------------------------------------------------------TCTCGCTCTCTCTCTCT------CTCTCTATTT-----------------GTCT--CTTCCGCATA-GCGCAA----------------------------------------------GTC-------GACGTC--GGGGCTGACGGGCAG--CGT-------------TTCACAGGAGAATCGGGTGAC-TATCACCCTGATTGC-TGTTG----------------------------TGCTG-CTGTT-CATCGT

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TGTGT-----TTG-GTTGTttttcct-ttcttttctctccgtct-ctct-------ctttccct-----------------------ctctctGTTTACATTGAGC--TGTTTTGTCCGTGCACGTGCTAGACGATGTAGA--GAGTGAGGGAGAGAGCGAATAG-AATAACAGCTCA-TTGTGCTGAGCGCCCAGCCT

Size

Hit Count

Total Norm

droSim1

TATGT-----TTG-GTTGTttttcct-ttcttttctctccgtct-ctct-------ctttccct-----------------------ctctctGTTTACATTGAGC--TGTTTTGTCCGTGCACGTGCTAGACGATGTAGA--GAGTGAGGGAGAGAGCGAATAC-AATAACAGCTCA-TTGTGCTGAGCGCCCAGCCT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...................................................................................................................................ACGATGTAGA--GAGTGAGGGAG.............................................	21	1	4.00	0.00	2.00	2.00	0.00
.........................................................................................CTCTxTTAACATTGAGC--TGT........................................................................................	19	1	4.00	0.00	0.00	4.00	0.00
.........................................................................................................................................GAGA--GAGAGAGGGAGAGA..........................................	18	5	0.20	0.20	0.00	0.00	0.00
................................................................................................................................TAGACGATGTAGA--GAGTGAGGGA..............................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................................TCAGTCT-CTCT-------CTCTCCC........................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................................ACGATGTAGA--GAGTGAGGGA..............................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TCTxTTAACATTGAGC--TGT........................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.....................................TCGGTCT-CTCT-------CTCTCCC........................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................................AGACGATGTAGA--GAGTCAGGGA..............................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................................ACGATGTAGA--GAGTGAGGGAGA............................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................GACGATGTAGA--GAGTGAGGGAGA............................................	23	1	1.00	0.00	0.00	0.00	1.00

droSec1

TATGT-----TTG-GTTGTTTTTCCT-TTCTTTTCTTTCCGTCT-CTCT-------CTTTCCCT-----------------------CTCTCTGTTTACATTGAGC--TGTTTTGTCCGTGCACGTGCTAGACGATGTAGA--GAGTGAGGGAGAGAGCGAATAC-AATAACAGCTCA-TTGTGCTGAGCGTCCAGCCT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................................................................................GACGATGTAGA--GAGTGAGGGAGA............................................	23	1	5.00	1.00	0.00	4.00
.........................................................................................CTCTxTTAACATTGAGC--TGT........................................................................................	19	1	4.00	0.00	4.00	0.00
...................................................................................................................................ACGATGTAGA--GAGTGAGGGAGA............................................	22	1	2.00	1.00	1.00	0.00
...................................................................................................................................ACGATGTAGA--GAGTGAGGGAG.............................................	21	1	1.00	1.00	0.00	0.00
..............................................................................................................................GCTAGACGATGTAGA--GAGTGAGGGAGA............................................	27	1	1.00	1.00	0.00	0.00
.................................................................................................................................AGACTATGTAGA--GAGTGAGGGA..............................................	22	1	1.00	0.00	0.00	1.00
.................................................................................................................................AGACGATGTAGA--GAGTGAGGGA..............................................	22	1	1.00	1.00	0.00	0.00
..........................................................................................................................................AGA--GAGAGAGGGAGAGAGA........................................	19	5	0.20	0.20	0.00	0.00
.........................................................................................................................................CAGA--GAGTGAGCGAGAGAGC........................................	20	1	1.00	0.00	0.00	1.00
......................................................................................................................................ATGTAxA--GAGTGAGGTAGA............................................	18	1	1.00	0.00	1.00	0.00
................................................................................................................................TAGACGATGTAGA--GAGTGAAG................................................	21	1	1.00	0.00	0.00	1.00
................................................................................................................................TAGATGATGTAGA--GAGTGAGGT...............................................	22	1	1.00	1.00	0.00	0.00
.........................................TCT-CTCT-------CTTTCGCT-----------------------CTCCC...........................................................................................................	20	1	1.00	0.00	1.00	0.00

droYak2

TGTGC-----TTG-GTTGTTTTTCCT-TTCTTTTCTCTCCGCCT-CTCT-------CTTTCCCT-----------------------CTCTCTGTTTACATTAAGC--GGTTTTGCCCGTGCACGTGCTAGACGATATAGAAAGAGAGAGGGAGAGAGCGAATAACAATAACAGCTCG-TTTTGCTGAGCGCCCAGCCT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................................................................................................GAGAGAGAGAGAGAGAGA......................................	18	6	0.50	0.00	0.00	0.50	0.00	0.00
...........................................................................................................................................GAGAGAGAGAGAGAGAGA..........................................	18	6	0.50	0.00	0.00	0.50	0.00	0.00
......................................................................................................................................ATATAAAAAGAGAGAGAGAGAGA..........................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
..........................................................................................................................................AAAAAGAGAGAGAGAGAGA..........................................	19	1	2.00	0.00	0.00	2.00	0.00	0.00
.......................................................................................................................................TATAGAAAGAGAGAGGGAG.............................................	19	1	2.00	0.00	0.00	0.00	2.00	0.00
......................................................................................................................................ATATAAAAAGAGAGAGAGAGA............................................	21	1	2.00	0.00	0.00	2.00	0.00	0.00
......................................................................................................................................ATATAAAAAGAGAGAGAGA..............................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................................................................................................AGAACGAGAGAGGGAGGGA..........................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................................................................................................AGCAAGAGAGAGAGAGAGAGC........................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................................................................................GACAGAGAGAGAGAGAGA..........................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................................................................................GAAAGAGAGAGCGCGAGA..........................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................................................................................................................................TATAGAGAGAGAGAGAGAGA............................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................................................................................AATAGAGAGGGAGAGAGAG.......................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................T-------CTTTCTCT-----------------------CTCTCTGTGT......................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................................ATAAAAAGAGAGAGAGAGAGA..........................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................................................ATAAAAAGAGAGAGAGAGAGAGC........................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................................................................................................................................................AATGACAGCTCA-TTTTG...............	17	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................................................................................................ATATACAAAGAGAGAGAGAGA............................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................................................ATAGAGAGAGAGAGAGAGA............................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................................................................................GAGAGATAGAGGGAGAGA..........................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................................................................................................AAGAGAGGGAGAGAGAGA......................................	18	3	0.33	0.00	0.00	0.33	0.00	0.00
..............................................................................................................................................AGAGAGAGGGAGAGAGAG.......................................	18	5	0.20	0.00	0.00	0.20	0.00	0.00
.................................................................................................................................................AAGAGGGAGAGAGCGGA.....................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................................................................................GAAAAAGAGAGGGAGAGA..........................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................................................................................................AGCGAGGGATAGAGCGAATA...................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................................................................................GAGAGATAGAGGGAGAGAG.........................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................................................................................GAAAGAGAGAGTGAGAGGG.........................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................................................ATAGAAAGAGAGAGAGAAAGA..........................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................................................................................GAGAGAGAGAGGGAGG............................................	16	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................................................................................................GAGAAAGAAAGAGAGAGGGAGAG...........................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................................................................................................ATAACAATAACAGCTCG-TC..................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................................................ATAAAAAGAGAGAGAGAGA............................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................................................................................AAGAGAGAGAGAGAGAGC........................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
..........................................................................................................................................AGAACGAGAGAGAGAGAGA..........................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

TGTGT-----TTG-GTTGTTTTTCCT-TTCTTTTCTCTCCGTC---TCT-------CATTCCCT-----------------------CTCTCTGTTTACATTAAGC--GGTTTTGCCTCTGCACGTGCTAGACGGTATAGA--GAGAGAGGGAGAGAGCGATTAC-AATAACAGCTCA-TTGTGCTGAGCGCCCAGCCT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........................................................................................................................................GA--GAGAGAGAGAGAGAGA........................................	18	4	2.75	0.50	0.00	2.25	0.00
...............................................................................................................................................GAGAGAGAGAGAGAGAGA......................................	18	4	2.75	0.50	0.00	2.25	0.00
.........................................................................................................................................GAGA--GAGAGAGAGAGAGA..........................................	18	4	2.75	0.50	0.00	2.25	0.00
...........................................................................................................................................GA--GAGAGAGAGAGAGAGAGA......................................	20	1	2.00	0.00	0.00	2.00	0.00
...............................................................................................................................................GAGAGAGAGAGAGAGAGAT.....................................	19	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................................ATAGA--GAGAGAGAGAGAGT..........................................	19	2	0.50	0.00	0.00	0.50	0.00
..........................................................................................................................................AGA--GAGAGAGAGAGAGAGA........................................	19	3	0.33	0.33	0.00	0.00	0.00
.........................................................................................................................................AAGA--GAGAGAGAGAGAGA..........................................	18	1	1.00	1.00	0.00	0.00	0.00
............................................................................................................................................................ATCGATTAC-AACAACAGC........................	18	1	1.00	0.00	0.00	0.00	1.00
............................................................................................................................................A--GAGAGAGAGAGAGAGAGA......................................	19	3	0.33	0.33	0.00	0.00	0.00
.......................................................................................................................................GATAGA--GAGAGAGAGAGA............................................	18	2	0.50	0.00	0.00	0.50	0.00
........................................................................................................................................AGAGA--GAGAGAGAGAGAGA..........................................	19	3	0.33	0.33	0.00	0.00	0.00
...........................................................................................................................................GA--AAGAGAGGGAGAGAGAGA......................................	20	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................................................................GAGA--GAGAGAGGGAGAGA..........................................	18	2	0.50	0.00	0.00	0.00	0.50
...............................................................................................................................................GAGAGAGCGAGAGAGAGA......................................	18	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................................................GAGAGAGAGAGAGAGCGA......................................	18	2	0.50	0.00	0.00	0.50	0.00
...........................................................................................................................................GA--CAGAGAGGGAGAGAGAG.......................................	19	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................................................AGA--GAGAGAGAGAGGGAGC........................................	19	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................................................AGA--GAGCGAGAGAGAGAG.........................................	18	1	1.00	0.00	0.00	0.00	1.00
.........................................................................................................................................TAGA--GAGAAAGGGAGAAA..........................................	18	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................................AGAGAGGGAGAGAGGGTT.....................................	18	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................................................GAGA--GAGAGAGGGAGAGGG.........................................	19	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................GA--GAGAGAGGGAGAGAAAGA......................................	20	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................................................GAGA--GAGAGAGGGAGAGAGA........................................	20	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................................................GAGATAGAGAGAGAGCGA......................................	18	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................................ATAGA--GAGAGAGAGAGAGG..........................................	19	2	0.50	0.50	0.00	0.00	0.00
................................................................................................................................................AGAGTGTGAGAGAGCGAT.....................................	18	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................................ATAGA--GAGAGAGAGAGAGA..........................................	19	2	0.50	0.00	0.00	0.50	0.00
.........................................................................................................................................GAGA--GAGAGAGAGAGAGAGCG.......................................	21	2	0.50	0.00	0.00	0.50	0.00
.........................................................................................................................................GAGA--GAGAGAGCGAGAGA..........................................	18	4	0.25	0.00	0.00	0.00	0.25
.....................................................................................................................................GCTATAGA--GAGAGAGAGAG.............................................	19	1	1.00	0.00	0.00	0.00	1.00
...........................................................................................................................................GA--GAGAGAGAGAGAGAGG........................................	18	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................................................................GAGA--GAGAGAGAGAGAGAGC........................................	20	2	0.50	0.00	0.00	0.00	0.50
..........................................................................................................................................AGA--GAGAGAGAGAGAGAGAGA......................................	21	1	1.00	0.00	0.00	1.00	0.00

droAna3

TTTTT-----TTT-G--------------------------------------------TGCTT-----------------------CTCTCTGTTTACATTAAAA--GGT--TGGCC--GCACGTGCTGTTCGATAGCAA--GAGAATGAGGGAGAGCGAG-CG-AGTGGCAGG-GA---TTGCTGCGCGCCGAGCCT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............................................................................................................................................GAGAATGAGAGAGAGAGA......................................	18	2	0.50	0.50	0.00	0.00	0.00
..................................................................................................................................................AATGAGTGAGAGCGAG-GG-.................................	18	1	1.00	1.00	0.00	0.00	0.00

dp4

TGTTTGTCTTTTG-Gttttttttttt-ttgttttttttt------ttgtgttttttcttCCACT-----------------------CTCTTTATTT------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................TTTTTTTT-TTTTTTTTTTTT------..........................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
..............TTTTTTTTTTTT-TTTTTTTT....................................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
......................TTTT-TTTTTTTTTTTT------TTTT......................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
.....................TTTTT-TTTTTTTTTTTT------TTT.......................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
...............TTTTTTTTTTT-TTTTTTTTT...................................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
..............................TTTTTTTTT------TTTTTTTTTTT...............................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
.................TTTTTTTTT-TTTTTTTTTTT.................................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
....................TTTTTT-TTTTTTTTTTTT------TT........................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
................TTTTTTTTTT-TTTTTTTTTT..................................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
...................TTTTTTT-TTTTTTTTTTTT------T.........................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00
......................TTGT-TTGTTTTTTTTT------TTGG......................................................................................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
.......................TTT-TTTTTTTTTTTT------TTTT......................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
.................TTTTTTTTT-TTTTTTTTTT..................................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
...............................TTTTTTTG------TTGTGTTTTTTA..............................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...................TTTTTTT-TTTTTTTTTTTT------TTT.......................................................................................................................................................	22	20	0.05	0.05	0.00	0.00	0.00
.................TTTTTTTTT-TTTTTTTTTTTT------T.........................................................................................................................................................	22	20	0.05	0.05	0.00	0.00	0.00
....................GTTTTT-TTGTTTGTTTTT------TT........................................................................................................................................................	20	4	0.25	0.25	0.00	0.00	0.00
........TTTTT-TTTTTTTTTTTT-TT..........................................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
....................TTTTTT-TTGTTTTTAGTT------TTG.......................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
................GTTTTTTTGT-TTGTTTTTTT..................................................................................................................................................................	20	4	0.25	0.25	0.00	0.00	0.00
..............................TTTTATTTT------TTGGGTTTTT................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
............................TGTTTTTTTTT------TTGTTTGTT.................................................................................................................................................	20	4	0.25	0.25	0.00	0.00	0.00
...................TTTTTTT-TTTTTTTTTTTT------TT........................................................................................................................................................	21	24	0.04	0.00	0.00	0.04	0.00
...............TTTTTTTTTTT-TTTTTTTTTTT.................................................................................................................................................................	22	20	0.05	0.05	0.00	0.00	0.00
...............TTGTTTTTTTG-TTGTTTTTTT..................................................................................................................................................................	21	4	0.25	0.25	0.00	0.00	0.00
.........TTTT-GTTTTCTTTTTT-TTGTT.......................................................................................................................................................................	21	2	0.50	0.00	0.50	0.00	0.00
...............TTTTTTTTTTT-TTTTTTTT....................................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
..............................TTTTTTTTT------TTTTTTTTTT................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
...................TTTTTGT-TTGTTTTTTTTA------TT........................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.................TTTTTTTGT-TTGTTTGTTTTT------..........................................................................................................................................................	21	3	0.33	0.33	0.00	0.00	0.00
........................TT-TTTTTTTTTTTT------TTGT......................................................................................................................................................	18	4	0.25	0.00	0.25	0.00	0.00
.............................GTTTTTTTGT------TTGTTTTTTTT...............................................................................................................................................	21	3	0.33	0.33	0.00	0.00	0.00
......................TTGT-TTGxTTTTTTTT------TTGTGT....................................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................TTTTTTTTT-TTTTTTTTTTTT------..........................................................................................................................................................	21	24	0.04	0.00	0.00	0.04	0.00
..................TTTTTTTT-TTTTTTTTTTTT------TT........................................................................................................................................................	22	20	0.05	0.05	0.00	0.00	0.00
...............TTTTTTTTTTT-TTTTTTTTTT..................................................................................................................................................................	21	24	0.04	0.00	0.00	0.04	0.00
..................TTGTTTTT-TTGTTGTTTTTT------T.........................................................................................................................................................	21	4	0.25	0.25	0.00	0.00	0.00
..............TTTTTTTTTTTT-TTTTTTTTT...................................................................................................................................................................	21	24	0.04	0.00	0.00	0.04	0.00
....................TTTTTT-TTTTTTTTTTTT------T.........................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
...............TGTTTTTTTTT-TTGTTTGTT...................................................................................................................................................................	20	4	0.25	0.25	0.00	0.00	0.00
................TTTTTTTTTT-TTTTTTTTT...................................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
................TTTTTTTTTT-TTTTTTTTTTTT------..........................................................................................................................................................	22	20	0.05	0.05	0.00	0.00	0.00
.....................TTTTT-TTTTTTTTTTTT------TT........................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
......................TTTT-TTTTTTTTTTTT------TTT.......................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
..................TTTTTTTT-TTTTTTTTTTT.................................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
.............................GTTTTTTTGT------TTGTTTTTTT................................................................................................................................................	20	4	0.25	0.25	0.00	0.00	0.00
........................TT-TTGTTTTCTTTT------TTTTGTT...................................................................................................................................................	21	2	0.50	0.00	0.50	0.00	0.00
....................TTTTTT-TTTTTTTTTTTT------TTTT......................................................................................................................................................	22	20	0.05	0.05	0.00	0.00	0.00
....................TTTTTT-TTTTTTTTTTTT------TTT.......................................................................................................................................................	21	24	0.04	0.00	0.00	0.04	0.00
..............TTTTTTTTTTTT-TTTTTTT.....................................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
......................TTTT-TTCTCTTTTTTT------TTGT......................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..................TTTTTTTT-TTTTTTTTTTTT------T.........................................................................................................................................................	21	24	0.04	0.00	0.00	0.04	0.00
...............................TTTTTTTT------TTTTTTTTTTT...............................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
..............TTTTTTTTTTTT-TTTTTTTTTT..................................................................................................................................................................	22	20	0.05	0.05	0.00	0.00	0.00
................GTTTTTTTGT-TTGTTTTTTTT.................................................................................................................................................................	21	3	0.33	0.33	0.00	0.00	0.00
...................TTTTTTT-TTTTTTTTTTTT------..........................................................................................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
.....................TTTTT-TTTTTTTTTTTT------TTTT......................................................................................................................................................	21	24	0.04	0.00	0.00	0.04	0.00
................TTTTTTTTTT-TTTTTTTTTTT.................................................................................................................................................................	21	24	0.04	0.00	0.00	0.04	0.00
.........................T-CTGTTTTTTTTT------TTCTGT....................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

droPer1

TGTTTGTCTTTTG-Gttttttttttg-ttttttttttttgtgtt-tttt-------cttCCTCT-----------------------CTCTTTATTT------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
................TTTTTTTTTT-TTTTTTTTTTTTT...............................................................................................................................................................	23	8	0.13	0.00	0.00	0.00	0.00	0.13
.................TTTTTTTTT-TTTTTTTTTT..................................................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
......TCTTTTG-GTTTTTGTTTTG-TA..........................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
........................TT-TTTTTTTTTTTTGTTT............................................................................................................................................................	18	19	0.05	0.00	0.00	0.05	0.00	0.00
...........................TTTTTTTTTTTTTTGTT-T.........................................................................................................................................................	18	19	0.05	0.00	0.00	0.05	0.00	0.00
..................TATTTTTG-TTTTTTTTTTTTGT..............................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...................TTTTTTT-TTTTTTTGTTT.................................................................................................................................................................	18	19	0.05	0.00	0.00	0.05	0.00	0.00
...............TTTTTTTTTTT-TTTTTTTT....................................................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
..............TTTTTTTTTTTT-TTTTTTTTTTT.................................................................................................................................................................	23	8	0.13	0.00	0.00	0.00	0.00	0.13
.............................TTTTTTTTTTTTTTT-TTTT-------...............................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
.....GTCTTTTT-TTTTTTTTTT...............................................................................................................................................................................	18	5	0.20	0.00	0.00	0.00	0.00	0.20
.....TTCTTTTG-GTTTTTGTTTTG-T...........................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............TTTTTGTTTTG-TTTTTTGTT...................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
..........TTT-TTTTTTTTTTTG-TTT.........................................................................................................................................................................	18	19	0.05	0.00	0.00	0.05	0.00	0.00
................TTTTTTTTTT-TTTTGTTT....................................................................................................................................................................	18	19	0.05	0.00	0.00	0.05	0.00	0.00
.....TTCTTTTG-GTTTTTGTTTTG-............................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
................ATATTTTTTG-TTTTTTTTTT..................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..................TTTTTTTT-TTTTTTTTTTTCG...............................................................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00	0.00
....................TTTTTT-TTTTTTTTGTTT................................................................................................................................................................	18	19	0.05	0.00	0.00	0.05	0.00	0.00
..................TTTTTTTT-TTTTTTGTTT..................................................................................................................................................................	18	19	0.05	0.00	0.00	0.05	0.00	0.00
..................TTTTTTGG-TTTTTTTTTGT.................................................................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00	0.00
....................TTTTTT-TTTTTTTTTTTTT...............................................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
................TTTTTTTTTT-TTTTTTTTT...................................................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
......................TTTA-TTTGTTTTTTTTGTGT............................................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50	0.00
...............TTTTTTTTTTT-TTTGTTT.....................................................................................................................................................................	18	19	0.05	0.00	0.00	0.05	0.00	0.00
.....................TTTTT-TTTTTTTTTTTTTT..............................................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
...............TTTTTTTTTTT-TTTTTTTTTTTT................................................................................................................................................................	23	8	0.13	0.00	0.00	0.00	0.00	0.13
..................TTTTTTTT-TTTTTTTTTTT.................................................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
...................TTTTTTG-GTTTTTTTTTGT................................................................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00	0.00
...........................TTTTTTTTTTTTTTTTT-TT........................................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
..............GTCTTTTTTTTT-TTTTTT......................................................................................................................................................................	18	5	0.20	0.00	0.00	0.00	0.00	0.20
.................TTTTTTTTG-TTTGTTTTGT..................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
............................TTTTTTTTTTTTTTTT-TTT.......................................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
..................TTTTTTTA-TTTTTTTTTTTT................................................................................................................................................................	20	9	0.11	0.00	0.11	0.00	0.00	0.00
.......CTTTTG-GTTTTTGTTTTG-T...........................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
..............TTTTTTTTTTTT-TTTTTTT.....................................................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
........TTTTG-TTTTTTTTGTTG-TTT.........................................................................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00	0.00
................TTTTTTTATT-TTTTTTTTTT..................................................................................................................................................................	20	9	0.11	0.00	0.11	0.00	0.00	0.00
.................TTTTTTTTT-TTTTTTTTTTTTTT..............................................................................................................................................................	23	8	0.13	0.00	0.00	0.00	0.00	0.13
.................TTTTTTTAT-TTTTTTTTTTT.................................................................................................................................................................	20	9	0.11	0.00	0.11	0.00	0.00	0.00
...................TTTTTTT-TTTTTTTTTTTT................................................................................................................................................................	19	20	0.05	0.05	0.00	0.00	0.00	0.00
.................TTTTTTTTT-TTTTTGTTT...................................................................................................................................................................	18	19	0.05	0.00	0.00	0.05	0.00	0.00
..............................................ATT-------CxTCCTCT-----------------------CTCTTTATT.......................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...............TTTTTTTATTT-TTTTTTTTT...................................................................................................................................................................	20	9	0.11	0.00	0.11	0.00	0.00	0.00

droWil1

TGTGC-----T---GTTGTCTTTtct-ctct---ctctctctct-ctct-------ttgtctctTTGCTCGATAGCTACTTTTGTGACTCTCTGTTTACATGGGG-AACATTTTGCACGTGTTCG----------------------------------------------CTGCTAT-CGCTGCTGTGCGCCCAGCAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...........................................................................CTACTTTTATGGCTCTCT..........................................................................................................	18	1	7.00	0.00	5.00	0.00	2.00
........................CT-CTCT---CTCTCTCTGG-CTC.......................................................................................................................................................	19	2	3.00	0.00	0.00	0.50	2.50
....................................CTCTCTCT-CTCT-------CTGGCTC........................................................................................................................................	19	2	3.00	0.00	0.00	0.50	2.50
........................CT-CTCT---CTCTCTCTGG-CTCT-------...............................................................................................................................................	20	2	2.00	0.00	0.00	1.00	1.00
....................................CTCTCTCT-CTCT-------CTGGCTCT.......................................................................................................................................	20	2	2.00	0.00	0.00	1.00	1.00
.......................TCT-CTCT---CTTTCTCTCT-CGCT-------...............................................................................................................................................	21	2	1.00	0.00	0.00	0.00	1.00
.....................TTTGT-CTCT---GTCTCTCTCT-CT........................................................................................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
.....................GTTCT-CTCT---CTCTCTCTCC-CT........................................................................................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
......................TTTT-CTCT---CTCTCTCTGT-C.........................................................................................................................................................	19	2	1.00	0.00	0.00	0.00	1.00
....................TTTTCT-CTCT---CTCTCTGTC............................................................................................................................................................	19	2	1.00	0.00	0.00	0.00	1.00
..........................................................................GCTACTTTTATGGCTCTC...........................................................................................................	18	1	2.00	0.00	0.00	0.00	2.00
....................................CTCTCTCT-CTCT-------GTGTCTCT.......................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50
............................TCT---CTCTCTCTCT-CTCT-------CT.............................................................................................................................................	19	4	0.25	0.00	0.00	0.00	0.25
........................GT-CTCT---CTCTCTCTCT-CTCT-------CT.............................................................................................................................................	22	3	0.33	0.00	0.33	0.00	0.00
......................CTCT-CTCT---CTCTCTCACT-CTCT-------...............................................................................................................................................	22	2	0.50	0.00	0.00	0.50	0.00
.............................CT---CTGTCTCTCT-xTCT-------TTGTC..........................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.............................CG---CTCTCTCTCT-CTCT-------AT.............................................................................................................................................	18	3	0.33	0.00	0.33	0.00	0.00
....................GTCTCT-CTCT---CTCTCTCTCT-CT........................................................................................................................................................	22	3	0.33	0.00	0.33	0.00	0.00
........................CT-CTCT---GTCGCTCTCT-CT........................................................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
..................................CTCTCTCTCT-CTCT-------CTGTGT.........................................................................................................................................	20	4	0.25	0.00	0.25	0.00	0.00
.......................TCT-CTCT---CTCTCTCTCT-GTTT-------...............................................................................................................................................	21	4	0.25	0.00	0.25	0.00	0.00
...........................CTCT---CTCTCTCTCT-CTGT-------GT.............................................................................................................................................	20	4	0.25	0.00	0.25	0.00	0.00
..................................CTATCTCTAT-CTCT-------TTGTCTCT.......................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..............................T---CTCTCTCTCT-CTGT-------GTGTC..........................................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
.........................T-CTCT---CTCTCTCTCT-CTGT-------TT.............................................................................................................................................	21	4	0.25	0.00	0.25	0.00	0.00
..............................T---CTCTCTCTCT-CTCT-------CTGTTT.........................................................................................................................................	21	4	0.25	0.00	0.25	0.00	0.00
........................CT-CTCT---CTCTCTCTCT-GTGT-------...............................................................................................................................................	20	4	0.25	0.00	0.25	0.00	0.00
....................TTCTCT-CTCT---CTTTCTCTCT-..........................................................................................................................................................	20	4	0.25	0.00	0.00	0.00	0.25
..............................T---CTCTCTCTCT-CTCT-------TTCGCT.........................................................................................................................................	21	2	0.50	0.00	0.00	0.50	0.00
..................................CTCTGTCTCT-CTCT-------TTTTCTC........................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
............................TCT---CTCTCTCTCT-CTCT-------GTTT...........................................................................................................................................	21	4	0.25	0.00	0.25	0.00	0.00
...........................CTCT---CTCTCTCTGG-CTCT-------...............................................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
.....................TCTCT-CTCT---CTCTCTCTCT-..........................................................................................................................................................	19	4	0.25	0.00	0.00	0.00	0.25
...........................................T-CTCT-------TTxTGTCTTTGCTCGAT..............................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................CG-CTCT---CTCTCTCTCT-AT........................................................................................................................................................	18	3	0.33	0.00	0.33	0.00	0.00
.......................TCT-CTCT---CTCTCTCTTT-CGCT-------...............................................................................................................................................	21	2	0.50	0.00	0.00	0.50	0.00
.......................TCT-GACT---CTCTCTCTCT-CTCT-------...............................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
......................GTCT-CTCT---CTCTCTCTCT-CTCT-------...............................................................................................................................................	22	3	0.33	0.00	0.33	0.00	0.00
....................................TTCTCTCT-CTCT-------TTCTCTCT.......................................................................................................................................	20	4	0.25	0.00	0.00	0.00	0.25
..........................................................................GCTGCTTGTGTGACTCTC...........................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...........................CTCT---CTGTCGCTCT-CTCT-------...............................................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
........................CT-ATCG---CTCTCTCTCT-CT........................................................................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50
.............................CT---CTCTCTCTCT-CTCT-------GTGT...........................................................................................................................................	20	4	0.25	0.00	0.25	0.00	0.00
...........................CGCT---CTCTCTCTCT-CTAT-------...............................................................................................................................................	18	3	0.33	0.00	0.33	0.00	0.00
........................CT-CTCT---CTCTCTGGCT-CT........................................................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
....................................CTCTCTCT-CTCT-------TTGACTT........................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
........................CT-CTCT---CTCTCTCTCA-CTCT-------CT.............................................................................................................................................	22	2	0.50	0.00	0.00	0.50	0.00
.........................T-CTCT---CTCTCTCTCT-CTCT-------...............................................................................................................................................	19	4	0.25	0.00	0.00	0.00	0.25
.......................TCT-CTCT---CTCTCTCTxG-CTCT-------...............................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50
.......................TCT-CTCT---CTCTCTGGCT-CTCT-------T..............................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
........................TT-CTCT---CTCTCTTTCT-CTCT-------...............................................................................................................................................	20	4	0.25	0.00	0.00	0.00	0.25
...................................ACTCTCTCT-CTCT-------TTGTGT.........................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.............................CT---CTCTCTCTCT-TACT-------TTGT...........................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.......................TCT-CTCT---CTCTCTCTxG-CTCT-------G..............................................................................................................................................	21	3	0.33	0.00	0.00	0.00	0.33
......................TTCT-CTCT---CTCTTTCTCT-CT........................................................................................................................................................	20	4	0.25	0.00	0.00	0.00	0.25
...............................................CT-------TTGTGTCTTTGCTTGA...............................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
............................TCT---CTTTCTCTCT-CTCT-------TTGG...........................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................TCT-CGCT---CTCGCTCTCT-CTC.......................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
........................CT-CTCT---CTGTCTCTCT-CCCT-------...............................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.............................CT---CTCTCTCTGG-CTCT-------TTGT...........................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...........................CTCG---CTCTCTCTCT-CTCT-------TTGC...........................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................TCTCTCTCT-CTCT-------GTGTGTC........................................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
......................................CTCTCT-CTCT-------CTGGCTCT.......................................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
..............................................TCT-------ATGTCGCTTTGCTCGA...............................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...........................CTAT---CGCTCTCTCT-CTCT-------...............................................................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50
.......................TCT-CTCT---CTCTGTCCCT-CTCT-------...............................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
......................TTCT-CTCT---CTCGCTCTGT-..........................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.......................TCT-CTCT---CTCTCTCTCT-CT........................................................................................................................................................	19	4	0.25	0.00	0.00	0.00	0.25
.....................GTTCT-CTCT---CTCTCTGTCT-CTC.......................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................CTCTCTCTCT-GTCT-------GTGT...........................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
........................CT-CTCT---CTCTCTGTGT-CTCT-------...............................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50

droVir3

TGTTG-----TT-ATTT-TTTTTTCT-TCAT-TTC-----GTTTTGTGT-------GTGTATTT-----------------------CTCTTTGTTTACATTG-GCAGTGCT----TCGTGCACGTGCT----------------------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..............................T-TTT-----TTTTTGTGT-------GTGT...........................................................................................................................................	17	2	0.50	0.00	0.50	0.00	0.00	0.00
TGTTG-----TT-ATTT-TGTTTTCT-............................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................A-TTC-----GTTTTGTGT-------GTGTGT.........................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................TGTGTGT-------GTGTATTT-----------------------GTC.............................................................................................................	18	4	0.25	0.00	0.00	0.00	0.00	0.25

droMoj3

TGTTG-----TT-A------TTTTTT-TTCTTTTC-----GTTTTGTGT-------GTGTGTTT-----------------------CTCTTTGTTTACATTA-GCGGCGCT----TCGTGCACGTGCT-GAT----------------------------------------GCTTTCTGCTGCTGTGCGCCCAGTAT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.............................................GTGT-------GCGTGTTT-----------------------CTCTCT..........................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...........T-x------TTTTTT-CTTTTTTC-----GTTTTG.........................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.............A------TTTTTT-ATTTTTTC-----GTTTTG.........................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00

droGri2

TGTTA-----TTTATTT-TTTTTTCTCTCGTTTTGCTTTT-----GTGT-------GTGTATTT-----------------------CTCTTTGTTTACATTC-GAAGCGCTTT----GTGCACGTGC-----------------------------------------------TCA-CTTTTCTGAGCGCCCAGCAT

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image