dme-mir-33- 12- and 20-way alignments

dme-mir-33	chr3L:19791061-19791159 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 19791086-19791106
   star strand at position 19791125-19791146
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3L:19791046-19791174 +	CTG--AGTG---CCACCAGACTCT--------TCCT-CTGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACATA-CAACG-CCG---AATG
droSim1	chr3L:19083102-19083230 +	CTG--AGTG---CCACCAGACTCC--------TCCT-CCGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACACA-CAACG-CCG---AATG
droSec1	super_29:452742-452870 +	CTG--AGTG---CCACCAGACTCT--------TCCT-CCGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACACA-CAACG-CCG---AATG
droYak2	chr3L:20771315-20771443 -	CTG--AGTG---CCACCAGACTCT--------TACT-CCAGAGATGTCACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAACG-CCG---AGTG
droEre2	scaffold_4784:19550563-19550691 +	CTG--AGTG---CCACCAGACTCT--------CACT-CCAGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAACG-CCG---AGTG
droAna3	scaffold_13337:19456783-19456919 -	CCG--AATA---CCAGCAGACACTATACACCCGCCC-TCGGAGATGTCACGCAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCACTT---GC-TCCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCACAAA-CAACG-CCA---ACTT
dp4	chrXR_group6:5913809-5913939 +	AAA--AACC---AAACCAAACACT-----------C-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCATCTT---GATTTCAGGCAATACAACTGCAATGCAAGCTCTGTGCATTTCATAAATCAACG-CCGTCCAATG
droPer1	super_47:413986-414116 +	AAA--AACC---AAACCAAACACT-----------C-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCATCTT---GATTTCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCATAAATCAACG-CCGTCCAATG
droWil1	scaffold_180698:8572488-8572628 +	CGG--AACC---TAAACAAAT------------------TGAAGTTACACGAAGGTGCATTGTAGTCGCATTGTCTGTGCTCCAAAAAAAAAAAACCCCCAGTT--TCTATTCAGGCAATACAACTGCAGTGCAAGCTTCGTGTGACTTATAAG-CAACG-GCA---AATA
droVir3	scaffold_13049:22941101-22941231 -	AAG--CCCA---AAATCCGACAT-----------CT-CTGGAGCTGTTACGGAGGTGCATTGTAGTCGCATTGTCTGT-------------------CTCAAAT-TTGC-CCGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACACG-CAACG-TCGGAAGTTA
droMoj3	scaffold_6680:17552824-17552951 -	ATG--CAGC----ATTCCGACAT-----------CT-TTGGAGCTGTGACGGAGGTGCATTGTAGTCGCATTGTCTGT-------------------ATCCTTTATTCT-CTGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACTCG-CAACG-TCG---GACA
droGri2	scaffold_15110:18214453-18214590 -	CTCTGCACAGTTAGGGCAGACAT-----------CTCCAGGAGCTGTCACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCAAAAA-TTGC-ATGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACTAG-CAACAACTCTTTGATC

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3L:19791046-19791174 +	NA	CTGAGTG-------CCACCAGACTCT--------TCCT-CTGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------AATT---GC--TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACATA-CAACGCCG---AATG-------------------------
droSim1	chr3L:19083102-19083230 +	1	CTGAGTG-------CCACCAGACTCC--------TCCT-CCGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------AATT---GC--TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACACA-CAACGCCG---AATG-------------------------
droSec1	super_29:452742-452870 +	1	CTGAGTG-------CCACCAGACTCT--------TCCT-CCGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------AATT---GC--TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACACA-CAACGCCG---AATG-------------------------
droYak2	chr3L:20771315-20771443 -	2	CTGAGTG-------CCACCAGACTCT--------TACT-CCAGAGATGTCACGAAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------AATT---GC--TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAACGCCG---AGTG-------------------------
droEre2	scaffold_4784:19550563-19550691 +	1	CTGAGTG-------CCACCAGACTCT--------CACT-CCAGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------AATT---GC--TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAACGCCG---AGTG-------------------------
droEug1	scf7180000409466:5133811-5133939 -	1	CCGAATG-------CCAGCAGGCTCT--------ATCT-CCAGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTTC--C-----------------ACTT---GC--TTCAGGCAATACAACTTCAGTGCAAACTCTGTGCATTTCACAAA-CAACGCCG---ACGG-------------------------
droBia1	scf7180000302193:5876354-5876482 -	2	CCGATTG-------CCAGCAGACTCC--------TCAT-CCAGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTTC--C-----------------ACTT---GC--CTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAACGCCG---ACTG-------------------------
droTak1	scf7180000415773:734789-734918 +	1	CCGAATG-------CCAGTTGACTCC--------TCATCCCAGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------ACTC---GC--TTCAGGCAATACAACTTCAGTGCAAGCTCCGAGCATTTCACAAA-CAACGCCG---ACAG-------------------------
droEle1	scf7180000491193:4070917-4071045 +	1	CCGGATG-------CCAGCAGACTCT--------TCCT-CCAGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------ACTT---GC--CTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CATCGTCG---ACCG-------------------------
droRho1	scf7180000773422:131623-131751 -	2	CCGAATG-------CCAGCAGACTAC--------TCCT-TCAGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------ACTT---GC--TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTTACAAG-CAACGCCG---ACTG-------------------------
droFic1	scf7180000454113:2506718-2506846 -	1	CCGAATG-------CCAGAGGACTCT--------TCCA-ACGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------AATT---GC--TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAACGTCA---ATTG-------------------------
droKik1	scf7180000302391:683560-683701 -	1	GTGACAC-------CCACAGAACG-----------CCT-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTTTCCCAAT--------------ATAT---CC--TCCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCACAAG-CAACAA-------TGCTCTTTCCT----------TTTTAG
droAna3	scaffold_13337:19456783-19456919 -	1	CCGAATA-------CCAGCAGACACTATACACCCGCCC-TCGGAGATGTCACGCAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------ACTT---GC--TCCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCACAAA-CAACGCCA---ACTT-------------------------
droBip1	scf7180000396360:652043-652179 -	1	CCGAATA-------CCAGCAGACACTATTCACCCGCCT-TCGGAGATGTCACGCAGGTGCATTGTAGTCGCATTGTCTGTCC--C-----------------GCTT---GC--TCCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCACAAA-CAACGCCA---CCTG-------------------------
dp4	chrXR_group6:5913809-5913939 +	1	AAAAACC-------AAACCAAACACT-----------C-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTCC--A-----------------TCTT---GA-TTTCAGGCAATACAACTGCAATGCAAGCTCTGTGCATTTCATAAATCAACGCCGTCCAATG-------------------------
droPer1	super_47:413986-414116 +	1	AAAAACC-------AAACCAAACACT-----------C-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTCC--A-----------------TCTT---GA-TTTCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCATAAATCAACGCCGTCCAATG-------------------------
droWil1	scaffold_180698:8572488-8572628 +	1	CGGAACC-------TAAACAAATT------------------GAAGTTACACGAAGGTGCATTGTAGTCGCATTGTCTGTGCTCCAAAAAAAAAAAACCCCCAGTT---TCTATTCAGGCAATACAACTGCAGTGCAAGCTTCGTGTGACTTATAAG-CAACGGCA---AATA-------------------------
droVir3	scaffold_13049:22941104-22941227 -	1	CCAAAAT-------CCG----ACA-----------TCT-CTGGAGCTGTTACGGAGGTGCATTGTAGTCGCATTGTCTGTCT--C-AA--------------ATTT---GC--CCGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACACG-CAACGTCG---GAAG-------------------------
droMoj3	scaffold_6680:17552824-17552948 -	1	CAGCATT-------CCGACA---------------TCT-TTGGAGCTGTGACGGAGGTGCATTGTAGTCGCATTGTCTGTAT--C-----------------CTTTATTCT--CTGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACTCG-CAACGTCG---GACA-------------------------
droGri2	scaffold_15110:18214439-18214590 -	1	CTC--TGCACAGTTAGGGCAGACAT-----------CTCCAGGAGCTGTCACGAAGGTGCATTGTAGTCGCATTGTCTGTCC--A-AA--------------AATT---GC--ATGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACTAG-CAACAACT---CTTT------GATCGCTGATCGATCTGA-

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

CTG--AGTG---CCACCAGACTCT--------TCCT-CTGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACATA-CAACG-CCG---AATG

Size

Hit Count

Total Norm

droSim1

CTG--AGTG---CCACCAGACTCC--------TCCT-CCGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACACA-CAACG-CCG---AATG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	692787.00	952.00	475699.00	167971.00	48165.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	13651.00	35.00	9362.00	4054.00	200.00
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	6722.00	157.00	4422.00	1927.00	216.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	6210.00	25.00	4058.00	1761.00	366.00
......................................................GTGCATTGTGGTCGCATTGTC................................................................................................	21	1	6144.00	1.00	5395.00	711.00	37.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	5087.00	20.00	3330.00	1613.00	124.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	4853.00	411.00	2612.00	1160.00	670.00
......................................................GTGCATTGTAGTCGCATTGAC................................................................................................	21	1	3848.00	0.00	2768.00	812.00	268.00
......................................................TTGCATTGTAGTCGCATTGTC................................................................................................	21	1	2984.00	0.00	2163.00	541.00	280.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	2099.00	3.00	1399.00	670.00	27.00
......................................................GTGCATTGTAGTCGCATTGTCC...............................................................................................	22	1	1750.00	3.00	1298.00	412.00	37.00
......................................................GTGCATTGTAGTCGCATTGCC................................................................................................	21	1	982.00	1.00	628.00	271.00	82.00
......................................................GTGCATTGTAGTCGCATTGTCTG..............................................................................................	23	1	886.00	23.00	479.00	317.00	67.00
......................................................CTGCATTGTAGTCGCATTGTC................................................................................................	21	1	819.00	1.00	591.00	134.00	93.00
......................................................GTTCATTGTAGTCGCATTGTC................................................................................................	21	1	808.00	0.00	577.00	170.00	61.00
......................................................GTGCATTGTAGTCTCATTGTC................................................................................................	21	1	800.00	0.00	625.00	120.00	55.00
......................................................GTGCATTGTAGCCGCATTGTC................................................................................................	21	1	678.00	5.00	460.00	175.00	38.00
......................................................GTGCATTGGAGTCGCATTGTC................................................................................................	21	1	652.00	2.00	478.00	133.00	39.00
......................................................GTGCATTGTAGTCGCATTGG.................................................................................................	20	1	572.00	0.00	317.00	239.00	16.00
......................................................GCGCATTGTAGTCGCATTGTC................................................................................................	21	1	566.00	3.00	389.00	139.00	35.00
......................................................ATGCATTGTAGTCGCATTGTC................................................................................................	21	1	550.00	0.00	351.00	144.00	55.00
......................................................GTGCATTGTAGTCGCATTGTCG...............................................................................................	22	1	542.00	5.00	303.00	192.00	42.00
.......................................................TGCATTGTAGTCGCATTGTC................................................................................................	20	1	521.00	0.00	390.00	92.00	39.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	513.00	0.00	333.00	168.00	12.00
......................................................GTGCATTGTAGGCGCATTGTC................................................................................................	21	1	490.00	5.00	278.00	182.00	25.00
......................................................GGGCATTGTAGTCGCATTGTC................................................................................................	21	1	421.00	2.00	270.00	118.00	31.00
......................................................GTCCATTGTAGTCGCATTGTC................................................................................................	21	1	380.00	0.00	269.00	65.00	46.00
......................................................GTGCACTGTAGTCGCATTGTC................................................................................................	21	1	369.00	0.00	245.00	98.00	26.00
......................................................GTGCATTGTAGTCCCATTGTC................................................................................................	21	1	363.00	0.00	271.00	51.00	41.00
......................................................GTGCATTGTAGTCACATTGTC................................................................................................	21	1	357.00	0.00	259.00	81.00	17.00
........................................................GCATTGTAGTCGCATTGTC................................................................................................	19	1	343.00	1.00	151.00	89.00	102.00
......................................................GTGCATTGCAGTCGCATTGTC................................................................................................	21	1	342.00	1.00	234.00	81.00	26.00
.........................................................CATTGTAGTCGCATTGTC................................................................................................	18	1	335.00	0.00	233.00	59.00	43.00
....................................................................................................................CAATACAACTTCAGTGCAAGCT.................................	22	1	328.00	29.00	201.00	71.00	27.00
......................................................GTGCATTGTAGTCGCATTGC.................................................................................................	20	1	314.00	1.00	234.00	70.00	9.00
......................................................GTGCGTTGTAGTCGCATTGTC................................................................................................	21	1	305.00	0.00	211.00	67.00	27.00
......................................................GTGCATTGTAGTCGCATTGGC................................................................................................	21	1	293.00	1.00	179.00	88.00	25.00
......................................................GTGCATTGTAGTTGCATTGTC................................................................................................	21	1	283.00	1.00	177.00	75.00	30.00
......................................................GTGCATTGTAGTCGCGTTGTC................................................................................................	21	1	280.00	1.00	222.00	42.00	15.00
......................................................GAGCATTGTAGTCGCATTGTC................................................................................................	21	1	260.00	2.00	167.00	69.00	22.00
......................................................GTGCATTGTAGTCGCATTATC................................................................................................	21	1	235.00	0.00	157.00	61.00	17.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	212.00	0.00	146.00	53.00	13.00
......................................................GTACATTGTAGTCGCATTGTC................................................................................................	21	1	211.00	1.00	145.00	44.00	21.00
......................................................GTGCATTGTAGTCxCATTGTC................................................................................................	20	1	197.00	0.00	147.00	27.00	23.00
......................................................GTGCATTTTAGTCGCATTGTC................................................................................................	21	1	189.00	0.00	131.00	54.00	4.00
.......................................................GTCATTGTAGTCGCATTGTC................................................................................................	20	1	188.00	0.00	135.00	40.00	13.00
......................................................GTGCATTGTAGACGCATTGTC................................................................................................	21	1	177.00	1.00	108.00	61.00	7.00
......................................................GTGTATTGTAGTCGCATTGTC................................................................................................	21	1	161.00	1.00	111.00	26.00	23.00
......................................................GTGCATTGTAGTCGAATTGTC................................................................................................	21	1	159.00	2.00	99.00	43.00	15.00
......................................................GTGCATTGAAGTCGCATTGTC................................................................................................	21	1	156.00	1.00	110.00	37.00	8.00
......................................................GTGCATTGTAGTCGTATTGTC................................................................................................	21	1	154.00	0.00	115.00	27.00	12.00
......................................................GTGCATTATAGTCGCATTGTC................................................................................................	21	1	154.00	0.00	106.00	35.00	13.00
......................................................GTTCATTGTAGTCGCATTGTCT...............................................................................................	22	1	152.00	0.00	112.00	38.00	2.00
......................................................GTGCATTGTAGTCGCACTGTC................................................................................................	21	1	143.00	0.00	96.00	33.00	14.00
......................................................GTGCATTGTAGTCGCATCGTC................................................................................................	21	1	142.00	2.00	95.00	37.00	8.00
......................................................GTGCATTGTAGTAGCATTGTC................................................................................................	21	1	136.00	0.00	82.00	46.00	8.00
......................................................GTGCATTCTAGTCGCATTGTC................................................................................................	21	1	127.00	0.00	94.00	24.00	9.00
......................................................GTGCATTGTAGTxxCATTGTC................................................................................................	19	1	124.00	0.00	96.00	21.00	7.00
......................................................GTGCATTGTAGTCGCATTGTG................................................................................................	21	1	124.00	0.00	78.00	41.00	5.00
......................................................GTGCATTGTAATCGCATTGTC................................................................................................	21	1	123.00	0.00	92.00	24.00	7.00
......................................................GTGCATTGTAGTCGCATTGTCAA..............................................................................................	23	1	104.00	74.00	8.00	3.00	19.00
.....................................................CGTGCATTGTAGTCGCATTGTC................................................................................................	22	1	103.00	2.00	75.00	22.00	4.00
......................................................GTGCATTGTATTCGCATTGTC................................................................................................	21	1	100.00	1.00	62.00	34.00	3.00
.........................................................CATTGTAGTCGCATTGTCT...............................................................................................	19	1	100.00	0.00	70.00	27.00	3.00
......................................................GTGCATTGTAGTGGCATTGTC................................................................................................	21	1	95.00	0.00	66.00	27.00	2.00
......................................................GTGCATTGTAGTCGCATGG..................................................................................................	19	1	89.00	0.00	49.00	36.00	4.00
......................................................GTGCATTGTAGTCGCATTGTAA...............................................................................................	22	1	81.00	6.00	41.00	18.00	16.00
......................................................GTGCATTGTAGTCGCATTTTC................................................................................................	21	1	80.00	2.00	43.00	33.00	2.00
......................................................GTGCATTGTACTCGCATTGTC................................................................................................	21	1	77.00	0.00	55.00	21.00	1.00
..........................................................ATTGTAGTCGCATTGTCT...............................................................................................	18	1	75.00	0.00	50.00	22.00	3.00
......................................................GTCCATTGTAGTCGCATTGTCT...............................................................................................	22	1	70.00	0.00	53.00	13.00	4.00
....................................................................................................................CAATACAACTTCAGTGCAAGC..................................	21	1	66.00	6.00	53.00	7.00	0.00
......................................................TTGCATTGTAGTCGCATTG..................................................................................................	19	1	66.00	0.00	50.00	14.00	2.00
......................................................TTGCATTGTAGTCGCATTGT.................................................................................................	20	1	62.00	0.00	46.00	12.00	4.00
......................................................GTGCATTGTAGTCGCTTTGTC................................................................................................	21	1	57.00	1.00	51.00	3.00	2.00
......................................................GTGGATTGTAGTCGCATTGTC................................................................................................	21	1	57.00	0.00	35.00	17.00	5.00
......................................................GTGCTTTGTAGTCGCATTGTC................................................................................................	21	1	57.00	2.00	44.00	9.00	2.00
......................................................TTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	55.00	0.00	42.00	13.00	0.00
......................................................GTGCATTGTAGTCTCATTG..................................................................................................	19	1	54.00	0.00	28.00	26.00	0.00
......................................................GTGCATTGTAGTCGGATTGTC................................................................................................	21	1	53.00	0.00	33.00	14.00	6.00
......................................................GTGCATTGTGGTCGCATTGT.................................................................................................	20	1	52.00	0.00	45.00	7.00	0.00
......................................................GTGCATTGTAGTCGCATTCTC................................................................................................	21	1	48.00	1.00	31.00	15.00	1.00
......................................................GTGCATTGTAGTCGCATTGTCTT..............................................................................................	23	1	47.00	1.00	24.00	22.00	0.00
......................................................GTGAATTGTAGTCGCATTGTC................................................................................................	21	1	45.00	2.00	18.00	24.00	1.00
...........................................................................TGT-------------------CCCAATT---GC-TTCAGG.......................................................	18	1	45.00	38.00	1.00	1.00	5.00
.......................................................GTCATTGTAGTCGCATTGTCT...............................................................................................	21	1	44.00	0.00	31.00	13.00	0.00
......................................................GTGCATTGTAGTCGCATTGA.................................................................................................	20	1	42.00	0.00	23.00	19.00	0.00
......................................................GTGCATGGTAGTCGCATTGTC................................................................................................	21	1	38.00	0.00	27.00	9.00	2.00
......................................................GTGCATTGTGGTCGCATTGTCT...............................................................................................	22	1	38.00	1.00	26.00	11.00	0.00
......................................................GTGCAATGTAGTCGCATTGTC................................................................................................	21	1	37.00	0.00	21.00	11.00	5.00
......................................................GTGCATTGTAGTCGCCTTGTC................................................................................................	21	1	37.00	9.00	18.00	8.00	2.00
.......................................................TGCATTGTAGTCGCATTGTCT...............................................................................................	21	1	34.00	0.00	27.00	6.00	1.00
......................................................GTGCATTGTCGTCGCATTGTC................................................................................................	21	1	32.00	5.00	13.00	12.00	2.00
......................................................GTGCATTGTGGTCGCATTGTA................................................................................................	21	1	32.00	0.00	19.00	13.00	0.00
....................................................................................................................CAATGCAACTTCAGTGCAAGCT.................................	22	1	32.00	0.00	30.00	2.00	0.00
......................................................TTGCATTGTAGTCGCATTGTA................................................................................................	21	1	30.00	0.00	23.00	5.00	2.00
......................................................GTGCATTGTTGTCGCATTGTC................................................................................................	21	1	29.00	1.00	21.00	6.00	1.00
......................................................GTGCATxxTAGTCGCATTGTC................................................................................................	19	1	29.00	0.00	25.00	3.00	1.00
......................................................GTGCATTGTAGTCxCATTG..................................................................................................	18	1	29.00	0.00	20.00	8.00	1.00
......................................................GTGCCTTGTAGTCGCATTGTC................................................................................................	21	1	26.00	3.00	12.00	8.00	3.00
......................................................GTGCATTGTAGTCGCAATGTC................................................................................................	21	1	26.00	0.00	21.00	1.00	4.00

droSec1

CTG--AGTG---CCACCAGACTCT--------TCCT-CCGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACACA-CAACG-CCG---AATG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	29975.00	7643.00	2655.00	19677.00
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	10668.00	3668.00	294.00	6706.00
....................................................................................................................CAATACAACTTCAGTGCAAGCT.................................	22	1	4409.00	1793.00	251.00	2365.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	1460.00	363.00	17.00	1080.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	799.00	67.00	21.00	711.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	491.00	109.00	43.00	339.00
......................................................GTGCATTGTAGTCGCATTGTCTG..............................................................................................	23	1	484.00	124.00	42.00	318.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	481.00	131.00	8.00	342.00
......................................................GTGCATTGTGGTCGCATTGTC................................................................................................	21	1	446.00	54.00	6.00	386.00
...........................................................................TGT-------------------CCCAATT---GC-TTCAGG.......................................................	18	1	301.00	0.00	269.00	32.00
....................................................................................................................CAATACAACTTCAGTGCAAG...................................	20	1	151.00	24.00	4.00	123.00
....................................................................................................................CAATGCAACTTCAGTGCAAGCT.................................	22	1	140.00	24.00	0.00	116.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	125.00	26.00	4.00	95.00
....................................................................................................................CAATACAACTTCAGTGCAAGC..................................	21	1	117.00	22.00	10.00	85.00
......................................................GTGCATTGTAGTCGCATTCTC................................................................................................	21	1	88.00	62.00	3.00	23.00
......................................................GTGCATTGTAGTCGCATTATC................................................................................................	21	1	82.00	54.00	1.00	27.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	77.00	1.00	5.00	71.00
.....................................................CGTGCATTGTAGTCGCATTGTC................................................................................................	22	1	62.00	11.00	9.00	42.00
....................................................................................................................CAATACAACTTCAGTGCAAGCTT................................	23	1	60.00	34.00	1.00	25.00
......................................................GCGCATTGTAGTCGCATTGTC................................................................................................	21	1	57.00	27.00	5.00	25.00
......................................................GTGCATTGTAGTCGCATTGCC................................................................................................	21	1	55.00	10.00	3.00	42.00
......................................................TTGCATTGTAGTCGCATTGTC................................................................................................	21	1	54.00	11.00	2.00	41.00
......................................................GTGCATTGTAGTCGCATTTTC................................................................................................	21	1	53.00	40.00	0.00	13.00
....................................................................................................................CAATACAACTTCAGTGCAAGCTA................................	23	1	51.00	21.00	1.00	29.00
......................................................GTGCATTGTAGTCGCGTTGTC................................................................................................	21	1	50.00	16.00	1.00	33.00
......................................................GTGCATTGTAGTCGCCTTGTC................................................................................................	21	1	44.00	16.00	3.00	25.00
......................................................GTGCATTGTAGTCCCATTGTC................................................................................................	21	1	43.00	5.00	5.00	33.00
......................................................GTGCATTGTAGCCGCATTGTC................................................................................................	21	1	43.00	16.00	5.00	22.00
......................................................GTGCATTGTAGTCTCATTGTC................................................................................................	21	1	42.00	7.00	5.00	30.00
......................................................GTGCATTGTAGTCGCATTGTCG...............................................................................................	22	1	41.00	8.00	3.00	30.00
......................................................GTGCATTGCAGTCGCATTGTC................................................................................................	21	1	40.00	11.00	1.00	28.00
......................................................GTGCATTGTAGTCGTATTGTC................................................................................................	21	1	39.00	8.00	16.00	15.00
......................................................GTGCATTGTAGTCGCATTAT.................................................................................................	20	1	38.00	34.00	0.00	4.00
......................................................GTGCACTGTAGTCGCATTGTC................................................................................................	21	1	37.00	6.00	1.00	30.00
......................................................GTGCATTGTAGTCGCGTTGT.................................................................................................	20	1	37.00	11.00	0.00	26.00
......................................................GTTCATTGTAGTCGCATTGTC................................................................................................	21	1	36.00	8.00	0.00	28.00
......................................................GTGCATTGTAGTxxCATTGTC................................................................................................	19	1	36.00	7.00	1.00	28.00
......................................................GTGCATTGTAGTTGCATTGTC................................................................................................	21	1	36.00	5.00	9.00	22.00
......................................................GTGCATTGTAGTCGCATTGTCAA..............................................................................................	23	1	35.00	1.00	22.00	12.00
......................................................GTGCCTTGTAGTCGCATTGTC................................................................................................	21	1	34.00	8.00	1.00	25.00
......................................................GTGCATTGTAGTCGCATTGTCTGT-------------------..........................................................................	24	1	33.00	20.00	0.00	13.00
......................................................GTGCATTGTAGTCGCATTCT.................................................................................................	20	1	32.00	24.00	0.00	8.00
....................................................................................................................CAATACAACTGCAGTGCAAGCT.................................	22	1	31.00	6.00	0.00	25.00
......................................................GTGCATTGTAGTCGCATTGAC................................................................................................	21	1	30.00	2.00	0.00	28.00
......................................................GTGCAATGTAGTCGCATTGTC................................................................................................	21	1	29.00	1.00	0.00	28.00
.....................................................................................................................AATACAACTTCAGTGCAAGCT.................................	21	1	29.00	13.00	2.00	14.00
......................................................GTGCATTGTGGTCGCATTGT.................................................................................................	20	1	29.00	5.00	2.00	22.00
......................................................GTGAATTGTAGTCGCATTGTC................................................................................................	21	1	27.00	3.00	0.00	24.00
......................................................GTGCATTGTAGTCACATTGTC................................................................................................	21	1	27.00	6.00	3.00	18.00
......................................................GTGCATTGTAGTCxCATTGT.................................................................................................	19	1	27.00	4.00	0.00	23.00
......................................................GTGCATTGTAGTCGCATTGC.................................................................................................	20	1	26.00	7.00	1.00	18.00
......................................................GTGCATTGTAGTCGCATTGTAA...............................................................................................	22	1	26.00	12.00	5.00	9.00
......................................................GTGCATTGTAGTCGCATTTT.................................................................................................	20	1	26.00	22.00	1.00	3.00
......................................................GTGCATTGTAGTCxCATTGTC................................................................................................	20	1	25.00	0.00	1.00	24.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	25.00	6.00	4.00	15.00
......................................................GTGCATAGTAGTCGCATTGTC................................................................................................	21	1	25.00	0.00	0.00	25.00
......................................................GTGCATTGCAGTCGCATTGT.................................................................................................	20	1	25.00	8.00	0.00	17.00
......................................................GTCCATTGTAGTCGCATTGTC................................................................................................	21	1	24.00	6.00	4.00	14.00
......................................................GTGCATTGAAGTCGCATTGTC................................................................................................	21	1	24.00	5.00	1.00	18.00
......................................................GAGCATTGTAGTCGCATTGTC................................................................................................	21	1	24.00	1.00	0.00	23.00
......................................................GTGCATTGTAGCCGCATTGT.................................................................................................	20	1	24.00	3.00	0.00	21.00
......................................................GTGCATTGTATTCGCATTGTC................................................................................................	21	1	22.00	4.00	1.00	17.00
......................................................GTGCATTATAGTCGCATTGTC................................................................................................	21	1	22.00	1.00	1.00	20.00
......................................................GTGCATTGTAGTCGCCTTGT.................................................................................................	20	1	21.00	9.00	1.00	11.00
......................................................GTGCATTGTGGTCGCATTGTCT...............................................................................................	22	1	21.00	3.00	0.00	18.00
......................................................GTGTATTGTAGTCGCATTGTC................................................................................................	21	1	21.00	1.00	12.00	8.00
......................................................GTGCATTGTACTCGCATTGTC................................................................................................	21	1	21.00	3.00	3.00	15.00
......................................................GTGCATTGTAGTCGCATTGTCC...............................................................................................	22	1	21.00	0.00	2.00	19.00
......................................................GTGCATTGTAGTCGTATTGT.................................................................................................	20	1	20.00	8.00	6.00	6.00
......................................................GTGCATTCTAGTCGCATTGTC................................................................................................	21	1	20.00	5.00	2.00	13.00
......................................................GTGCATTGTAGTCGCATCGTC................................................................................................	21	1	20.00	6.00	1.00	13.00
......................................................GTGCATTGTAGTCCCATTGT.................................................................................................	20	1	20.00	3.00	1.00	16.00
......................................................GCGCATTGTAGTCGCATTGT.................................................................................................	20	1	19.00	11.00	0.00	8.00
......................................................GTGCATTGTAGTCGCTTTGT.................................................................................................	20	1	19.00	7.00	0.00	12.00
........................................................GCATTGTAGTCGCATTGTC................................................................................................	19	1	18.00	7.00	7.00	4.00
......................................................GTGCGTTGTAGTCGCATTGTC................................................................................................	21	1	18.00	7.00	1.00	10.00
......................................................TTGCATTGTAGTCGCATTGT.................................................................................................	20	1	17.00	5.00	0.00	12.00
......................................................GTGCATTGTAGTCGCATTGA.................................................................................................	20	1	17.00	3.00	0.00	14.00
......................................................GGGCATTGTAGTCGCATTGTC................................................................................................	21	1	17.00	12.00	0.00	5.00
......................................................GTGCATTGTAGTCGCTTTGTC................................................................................................	21	1	17.00	3.00	9.00	5.00
....................................................................................................................CAATACAACTTCAGTGCACGCT.................................	22	1	17.00	15.00	0.00	2.00
......................................................GTGCATTGTAGACGCATTGTC................................................................................................	21	1	16.00	3.00	3.00	10.00
......................................................GTACATTGTAGTCGCATTGTC................................................................................................	21	1	16.00	4.00	0.00	12.00
.....................................................CGTGCATTGTAGTCGCATTGT.................................................................................................	21	1	16.00	3.00	2.00	11.00
......................................................GTGCATTGTAGTCGCATTGTCTT..............................................................................................	23	1	15.00	6.00	0.00	9.00
......................................................GTGCATTGTAATCGCATTGTC................................................................................................	21	1	15.00	4.00	3.00	8.00
....................................................................................................................CAATACAACTTCAGTGCATGCT.................................	22	1	14.00	14.00	0.00	0.00
......................................................GTGCATTGTAGTTGCATTGT.................................................................................................	20	1	14.00	3.00	0.00	11.00
......................................................GTGCATTGTGGTCGCGTTGTC................................................................................................	21	1	13.00	2.00	0.00	11.00
......................................................GTGCATTGTAGTCTCATTGT.................................................................................................	20	1	13.00	2.00	0.00	11.00
......................................................GAGCATTGTAGTCGCATTGT.................................................................................................	20	1	13.00	3.00	0.00	10.00
......................................................GTGCATTTTAGTCGCATTGTC................................................................................................	21	1	13.00	3.00	2.00	8.00
....................................................................................................................CAATACAACTTCAGTTCAAGCT.................................	22	1	13.00	3.00	1.00	9.00
......................................................GTGCATTGTAGTCGCACTGTC................................................................................................	21	1	13.00	5.00	1.00	7.00
......................................................ATGCATTGTAGTCGCATTGTC................................................................................................	21	1	12.00	2.00	2.00	8.00
......................................................GTGCATTGTAGTAGCATTGTC................................................................................................	21	1	12.00	0.00	3.00	9.00
......................................................GTGCATTGAAGTCGCATTGT.................................................................................................	20	1	12.00	2.00	0.00	10.00
......................................................GTGCATTGTxxTCGCATTGTC................................................................................................	19	1	12.00	3.00	1.00	8.00
......................................................GTGCATTGTAGTCGAATTGTC................................................................................................	21	1	11.00	2.00	0.00	9.00
......................................................CTGCATTGTAGTCGCATTGTC................................................................................................	21	1	11.00	2.00	1.00	8.00
......................................................GTGCATTGTAGTCGCATTGTTT...............................................................................................	22	1	11.00	5.00	0.00	6.00

droYak2

CTG--AGTG---CCACCAGACTCT--------TACT-CCAGAGATGTCACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAACG-CCG---AGTG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	117517.00	659.00	4612.00	1290.00	6766.00	104190.00
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	6160.00	139.00	1781.00	946.00	2642.00	652.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	2040.00	27.00	180.00	105.00	277.00	1451.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	983.00	533.00	37.00	21.00	39.00	353.00
......................................................GTGCATTGTGGTCGCATTGTC................................................................................................	21	1	753.00	0.00	64.00	8.00	85.00	596.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	742.00	26.00	167.00	22.00	197.00	330.00
......................................................GTGCATTGTAGTCGCATTGAC................................................................................................	21	1	680.00	1.00	3.00	1.00	3.00	672.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	570.00	31.00	11.00	5.00	9.00	514.00
......................................................TTGCATTGTAGTCGCATTGTC................................................................................................	21	1	399.00	0.00	0.00	1.00	7.00	391.00
......................................................GTGCATTGTAGTCGCATTTTC................................................................................................	21	1	377.00	4.00	105.00	0.00	256.00	12.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	306.00	2.00	44.00	19.00	86.00	155.00
......................................................GTGCATTGTAGTCGCATTGTCC...............................................................................................	22	1	289.00	5.00	5.00	0.00	16.00	263.00
......................................................GTGCATTGTAGTCGCATTGTCTG..............................................................................................	23	1	231.00	19.00	35.00	22.00	58.00	97.00
......................................................GTGCATTGTAGTCGCCTTGTC................................................................................................	21	1	224.00	3.00	32.00	2.00	185.00	2.00
......................................................GTGCATTGTAGTCGCATTGCC................................................................................................	21	1	217.00	2.00	8.00	1.00	37.00	169.00
....................................................................................................................CAATACAACTTCAGTGCAAGCT.................................	22	1	189.00	19.00	36.00	60.00	64.00	10.00
......................................................GGGCATTGTAGTCGCATTGTC................................................................................................	21	1	181.00	3.00	35.00	4.00	118.00	21.00
......................................................GCGCATTGTAGTCGCATTGTC................................................................................................	21	1	144.00	6.00	14.00	0.00	43.00	81.00
......................................................GTGCATTGTAGCCGCATTGTC................................................................................................	21	1	140.00	1.00	14.00	3.00	41.00	81.00
......................................................GTGCATTGTAGTCTCATTGTC................................................................................................	21	1	139.00	2.00	16.00	2.00	20.00	99.00
......................................................CTGCATTGTAGTCGCATTGTC................................................................................................	21	1	139.00	1.00	1.00	0.00	8.00	129.00
......................................................GTTCATTGTAGTCGCATTGTC................................................................................................	21	1	116.00	0.00	0.00	0.00	3.00	113.00
......................................................GTGCATTGTAGTCGCATTGGC................................................................................................	21	1	113.00	0.00	2.00	3.00	17.00	91.00
......................................................ATGCATTGTAGTCGCATTGTC................................................................................................	21	1	104.00	1.00	10.00	0.00	17.00	76.00
......................................................GTGCATTGTAGTCGCATTTT.................................................................................................	20	1	96.00	0.00	30.00	1.00	65.00	0.00
......................................................GTGCATTGTAGTCACATTGTC................................................................................................	21	1	91.00	0.00	14.00	2.00	11.00	64.00
......................................................GTGCATTGCAGTCGCATTGTC................................................................................................	21	1	85.00	0.00	3.00	2.00	14.00	66.00
......................................................GTGCATTGTAGTTGCATTGTC................................................................................................	21	1	80.00	0.00	6.00	1.00	12.00	61.00
......................................................GTGCATTGTAGTCGCATTGC.................................................................................................	20	1	78.00	0.00	3.00	8.00	17.00	50.00
......................................................GTGCACTGTAGTCGCATTGTC................................................................................................	21	1	77.00	0.00	5.00	0.00	7.00	65.00
.......................................................TGCATTGTAGTCGCATTGTC................................................................................................	20	1	77.00	0.00	3.00	0.00	3.00	71.00
......................................................GTGCATTGTAGTCGCGTTGTC................................................................................................	21	1	71.00	2.00	8.00	1.00	24.00	36.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	67.00	0.00	15.00	0.00	34.00	18.00
......................................................GTGCATTGTAGGCGCATTGTC................................................................................................	21	1	67.00	0.00	13.00	1.00	43.00	10.00
......................................................GTGCATTGTAGTCGCCTTGT.................................................................................................	20	1	66.00	0.00	14.00	1.00	51.00	0.00
......................................................GTGCGTTGTAGTCGCATTGTC................................................................................................	21	1	66.00	0.00	10.00	1.00	18.00	37.00
......................................................GTGCATTGTCGTCGCATTGTC................................................................................................	21	1	65.00	0.00	7.00	0.00	42.00	16.00
......................................................GTGCATTGGAGTCGCATTGTC................................................................................................	21	1	62.00	1.00	3.00	1.00	27.00	30.00
......................................................GTCCATTGTAGTCGCATTGTC................................................................................................	21	1	61.00	0.00	3.00	4.00	3.00	51.00
......................................................GTGCATTGTAGTCGCATTGTCG...............................................................................................	22	1	61.00	1.00	4.00	4.00	7.00	45.00
......................................................GTGCATTGTAGTCCCATTGTC................................................................................................	21	1	59.00	0.00	5.00	2.00	11.00	41.00
......................................................GTGCATTGTAGTCGCATTGG.................................................................................................	20	1	52.00	1.00	3.00	1.00	7.00	40.00
......................................................GGGCATTGTAGTCGCATTGT.................................................................................................	20	1	50.00	0.00	8.00	2.00	39.00	1.00
......................................................GTGCATTGTAGTCGCATTGTCAA..............................................................................................	23	1	50.00	41.00	2.00	1.00	4.00	2.00
.....................................................CGTGCATTGTAGTCGCATTGTC................................................................................................	22	1	48.00	3.00	16.00	0.00	14.00	15.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	47.00	0.00	2.00	1.00	5.00	39.00
......................................................GTGCATTGTAGTCGCATTATC................................................................................................	21	1	46.00	1.00	10.00	1.00	3.00	31.00
......................................................GTGCATTTTAGTCGCATTGTC................................................................................................	21	1	44.00	2.00	7.00	1.00	8.00	26.00
......................................................GTGCATTGTAGTAGCATTGTC................................................................................................	21	1	42.00	0.00	6.00	0.00	16.00	20.00
......................................................GAGCATTGTAGTCGCATTGTC................................................................................................	21	1	41.00	0.00	10.00	1.00	23.00	7.00
......................................................GTGCATTGTAGTCGCATCGTC................................................................................................	21	1	39.00	0.00	7.00	1.00	10.00	21.00
...........................................................................TGT-------------------CCCAATT---GC-TTCAGG.......................................................	18	1	38.00	26.00	6.00	0.00	3.00	3.00
......................................................GTACATTGTAGTCGCATTGTC................................................................................................	21	1	37.00	1.00	3.00	0.00	5.00	28.00
......................................................GTGCCTTGTAGTCGCATTGTC................................................................................................	21	1	36.00	0.00	2.00	0.00	34.00	0.00
......................................................GTGCATTGTAGTCGCACTGTC................................................................................................	21	1	36.00	1.00	5.00	0.00	9.00	21.00
......................................................GTGCATTGTAGTCGAATTGTC................................................................................................	21	1	36.00	1.00	7.00	2.00	11.00	15.00
......................................................GTGTATTGTAGTCGCATTGTC................................................................................................	21	1	35.00	0.00	2.00	0.00	8.00	25.00
......................................................GTGCATTGTGGTCGCATTGT.................................................................................................	20	1	35.00	2.00	9.00	1.00	17.00	6.00
.........................................................CATTGTAGTCGCATTGTC................................................................................................	18	1	34.00	0.00	0.00	1.00	0.00	33.00
......................................................GTGCATTGTATTCGCATTGTC................................................................................................	21	1	34.00	1.00	2.00	0.00	16.00	15.00
......................................................GTGCATTGTAGTCGTATTGTC................................................................................................	21	1	31.00	1.00	5.00	0.00	3.00	22.00
......................................................GTGCATTGTAGACGCATTGTC................................................................................................	21	1	30.00	2.00	2.00	0.00	7.00	19.00
......................................................GTGCATTATAGTCGCATTGTC................................................................................................	21	1	29.00	0.00	7.00	0.00	2.00	20.00
........................................................GCATTGTAGTCGCATTGTC................................................................................................	19	1	29.00	0.00	1.00	3.00	3.00	22.00
.......................................................GTCATTGTAGTCGCATTGTC................................................................................................	20	1	28.00	0.00	0.00	0.00	0.00	28.00
......................................................GTGCATTCTAGTCGCATTGTC................................................................................................	21	1	28.00	1.00	0.00	0.00	6.00	21.00
......................................................GTGCATTGTAGTCGCTTTGTC................................................................................................	21	1	25.00	0.00	1.00	3.00	20.00	1.00
......................................................GTGCATTGTAGTCGCATTCTC................................................................................................	21	1	24.00	0.00	4.00	0.00	16.00	4.00
......................................................GTGCATTGTAGTxxCATTGTC................................................................................................	19	1	24.00	0.00	0.00	2.00	0.00	22.00
......................................................GTGCATTGTAATCGCATTGTC................................................................................................	21	1	24.00	1.00	3.00	0.00	7.00	13.00
....................................................................................................................CAATGCAACTTCAGTGCAAGCT.................................	22	1	24.00	0.00	10.00	3.00	9.00	2.00
......................................................GTGCATTGTAGTCTCATTGT.................................................................................................	20	1	22.00	0.00	8.00	0.00	13.00	1.00
......................................................GTGCATTGAAGTCGCATTGTC................................................................................................	21	1	22.00	0.00	1.00	0.00	3.00	18.00
......................................................GTGCATTGTAGTCGCATTGTAA...............................................................................................	22	1	21.00	12.00	5.00	0.00	3.00	1.00
......................................................GAGCATTGTAGTCGCATTGT.................................................................................................	20	1	20.00	0.00	2.00	1.00	17.00	0.00
......................................................GTGCATTGTAGTGGCATTGTC................................................................................................	21	1	20.00	0.00	0.00	0.00	1.00	19.00
......................................................GTGCATTGTAGCCGCATTGT.................................................................................................	20	1	19.00	0.00	4.00	0.00	12.00	3.00
......................................................GTGCATTGTACTCGCATTGTC................................................................................................	21	1	19.00	0.00	4.00	0.00	5.00	10.00
......................................................GCGCATTGTAGTCGCATTGT.................................................................................................	20	1	19.00	0.00	5.00	4.00	10.00	0.00
......................................................GTGCATTGTAGTCxCATTGTC................................................................................................	20	1	18.00	0.00	0.00	0.00	0.00	18.00
......................................................GTGCATTGTAGTCGCATA...................................................................................................	18	1	18.00	0.00	7.00	0.00	10.00	1.00
......................................................GTGCATTGTAGTCGCATGGTC................................................................................................	21	1	18.00	0.00	3.00	0.00	15.00	0.00
......................................................GTGCATTGTAGTCGCATTGTCTT..............................................................................................	23	1	16.00	0.00	3.00	2.00	6.00	5.00
......................................................GTGCATTGTAGGCGCATTGT.................................................................................................	20	1	16.00	0.00	2.00	0.00	14.00	0.00
......................................................GTGCGTTGTAGTCGCATTGT.................................................................................................	20	1	16.00	0.00	5.00	1.00	9.00	1.00
......................................................GTGCCTTGTAGTCGCATTGT.................................................................................................	20	1	16.00	1.00	3.00	0.00	12.00	0.00
......................................................GTGGATTGTAGTCGCATTGTC................................................................................................	21	1	15.00	1.00	5.00	0.00	3.00	6.00
......................................................GTGCATTGTCGTCGCATTGT.................................................................................................	20	1	15.00	0.00	2.00	0.00	13.00	0.00
......................................................GTGCATTGTAGTCGCATTGTG................................................................................................	21	1	15.00	0.00	4.00	0.00	4.00	7.00
......................................................GTGAATTGTAGTCGCATTGTC................................................................................................	21	1	14.00	0.00	4.00	0.00	6.00	4.00
......................................................GTGCATTGTAGTCGCGTTGT.................................................................................................	20	1	14.00	0.00	4.00	1.00	9.00	0.00
......................................................GTGCAATGTAGTCGCATTGTC................................................................................................	21	1	14.00	0.00	4.00	0.00	1.00	9.00
......................................................GTGCATTGTATTCGCATTGT.................................................................................................	20	1	14.00	0.00	2.00	0.00	12.00	0.00
......................................................GTGCATTGTAGTCGCTTTGT.................................................................................................	20	1	14.00	0.00	0.00	3.00	11.00	0.00
......................................................GGGCATTGTAGTCGCCTTGTC................................................................................................	21	1	14.00	0.00	0.00	0.00	14.00	0.00
......................................................GTTCATTGTAGTCGCATTGTCT...............................................................................................	22	1	14.00	0.00	0.00	0.00	0.00	14.00
......................................................GTGCAGTGTAGTCGCATTGTC................................................................................................	21	1	14.00	1.00	1.00	0.00	11.00	1.00
......................................................GTGCTTTGTAGTCGCATTGTC................................................................................................	21	1	13.00	0.00	1.00	0.00	8.00	4.00
......................................................GTGCATTGTAGTCGCATTT..................................................................................................	19	1	13.00	0.00	6.00	1.00	6.00	0.00
......................................................GTGCATTGCAGTCGCATTGT.................................................................................................	20	1	13.00	1.00	3.00	0.00	9.00	0.00
......................................................GTGCATTGTAGTAGCATTGT.................................................................................................	20	1	12.00	0.00	3.00	0.00	8.00	1.00

droEre2

CTG--AGTG---CCACCAGACTCT--------CACT-CCAGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAACG-CCG---AGTG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	33039.00	402.00	6394.00	258.00	25985.00
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	7291.00	46.00	1479.00	60.00	5706.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	1970.00	5.00	249.00	12.00	1704.00
....................................................................................................................CAATACAACTTCAGTGCAAGCT.................................	22	1	1725.00	14.00	212.00	0.00	1499.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	1081.00	7.00	140.00	7.00	927.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	765.00	66.00	42.00	72.00	585.00
......................................................GTGCATTGTAGTCGCATTGTCTG..............................................................................................	23	1	533.00	17.00	56.00	0.00	460.00
......................................................GTGCATTGTAGTCGCATTTTC................................................................................................	21	1	336.00	16.00	227.00	10.00	83.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	235.00	3.00	53.00	1.00	178.00
....................................................................................................................CAATACAACTTCAGTGCAAG...................................	20	1	204.00	0.00	11.00	0.00	193.00
......................................................GTGCATTGTGGTCGCATTGTC................................................................................................	21	1	198.00	0.00	54.00	0.00	144.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	190.00	1.00	16.00	3.00	170.00
...........................................................................TGT-------------------CCCAATT---GC-TTCAGG.......................................................	18	1	185.00	8.00	2.00	0.00	175.00
....................................................................................................................CAATACAACTTCAGTGCAAGC..................................	21	1	170.00	0.00	22.00	0.00	148.00
......................................................GTGCATTGTAGTAGCATTGTC................................................................................................	21	1	157.00	1.00	5.00	0.00	151.00
......................................................GTGCATTGTAGTCTCATTGTC................................................................................................	21	1	148.00	4.00	15.00	2.00	127.00
......................................................GTTCATTGTAGTCGCATTGTC................................................................................................	21	1	131.00	0.00	1.00	0.00	130.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	118.00	0.00	8.00	0.00	110.00
......................................................GTGAATTGTAGTCGCATTGTC................................................................................................	21	1	117.00	0.00	2.00	0.00	115.00
......................................................GTGCATTGTAGTCGAATTGTC................................................................................................	21	1	116.00	0.00	15.00	0.00	101.00
......................................................GTGCATTGTATTCGCATTGTC................................................................................................	21	1	94.00	0.00	15.00	1.00	78.00
......................................................GTGCATTGTAGTCGCCTTGTC................................................................................................	21	1	94.00	4.00	54.00	0.00	36.00
......................................................TTGCATTGTAGTCGCATTGTC................................................................................................	21	1	89.00	0.00	4.00	1.00	84.00
......................................................GCGCATTGTAGTCGCATTGTC................................................................................................	21	1	76.00	1.00	18.00	2.00	55.00
......................................................GTGCATTGTAGTCGCATTTT.................................................................................................	20	1	70.00	1.00	40.00	4.00	25.00
......................................................GGGCATTGTAGTCGCATTGTC................................................................................................	21	1	70.00	3.00	46.00	2.00	19.00
.....................................................CGTGCATTGTAGTCGCATTGTC................................................................................................	22	1	69.00	0.00	21.00	0.00	48.00
....................................................................................................................CAATGCAACTTCAGTGCAAGCT.................................	22	1	67.00	0.00	11.00	0.00	56.00
......................................................GTGCATTTTAGTCGCATTGTC................................................................................................	21	1	65.00	0.00	4.00	1.00	60.00
......................................................GTGCATTGTAGCCGCATTGTC................................................................................................	21	1	64.00	1.00	14.00	1.00	48.00
......................................................GTGCATTGTAGTCGCATTGCC................................................................................................	21	1	63.00	2.00	18.00	1.00	42.00
......................................................GTGCATTGTAGTCACATTGTC................................................................................................	21	1	58.00	2.00	17.00	1.00	38.00
......................................................ATGCATTGTAGTCGCATTGTC................................................................................................	21	1	56.00	3.00	15.00	1.00	37.00
......................................................GTACATTGTAGTCGCATTGTC................................................................................................	21	1	54.00	1.00	6.00	1.00	46.00
......................................................GTGCATTGTAGTCGCATTGTCG...............................................................................................	22	1	52.00	2.00	12.00	5.00	33.00
......................................................GTGCATTGTAGTCTCATTGT.................................................................................................	20	1	52.00	0.00	12.00	0.00	40.00
......................................................GTGCCTTGTAGTCGCATTGTC................................................................................................	21	1	51.00	2.00	6.00	0.00	43.00
......................................................GTGCATTGTAGTCGCATTGTCAA..............................................................................................	23	1	47.00	7.00	2.00	18.00	20.00
......................................................GTGCATTGTAGTCGCGTTGTC................................................................................................	21	1	45.00	0.00	16.00	0.00	29.00
......................................................GTGCATTGCAGTCGCATTGTC................................................................................................	21	1	43.00	0.00	11.00	0.00	32.00
......................................................GTGCATTGTAGTCGCATTGTCC...............................................................................................	22	1	42.00	0.00	5.00	10.00	27.00
......................................................GTGCATTGTAGTTGCATTGTC................................................................................................	21	1	39.00	1.00	5.00	1.00	32.00
......................................................GTGCATTGTAGTCGTATTGTC................................................................................................	21	1	37.00	0.00	9.00	0.00	28.00
......................................................GTGCATTGTAGTCGCATTGTCTT..............................................................................................	23	1	37.00	1.00	4.00	0.00	32.00
......................................................GTGCATTGTAGTCCCATTGTC................................................................................................	21	1	32.00	0.00	4.00	0.00	28.00
......................................................GTCCATTGTAGTCGCATTGTC................................................................................................	21	1	31.00	0.00	0.00	1.00	30.00
......................................................GTGCATTGTAGTAGCATTGT.................................................................................................	20	1	31.00	0.00	3.00	0.00	28.00
......................................................GTGCATTGTAGTCGCCTTGT.................................................................................................	20	1	31.00	1.00	14.00	0.00	16.00
......................................................GTGCATTGTAGTCxCATTGTC................................................................................................	20	1	29.00	0.00	1.00	0.00	28.00
......................................................GTGCATTGTAGTxxCATTGTC................................................................................................	19	1	29.00	0.00	0.00	0.00	29.00
......................................................GTTCATTGTAGTCGCATTGT.................................................................................................	20	1	29.00	0.00	0.00	0.00	29.00
......................................................GTGCATTGTAGTCGCATCGTC................................................................................................	21	1	29.00	0.00	5.00	0.00	24.00
......................................................GTGCATTGTAGTCGCATTGTAA...............................................................................................	22	1	28.00	3.00	2.00	5.00	18.00
....................................................................................................................CAATACAACTGCAGTGCAAGCT.................................	22	1	28.00	2.00	8.00	18.00	0.00
......................................................GTGCATTGTAGTCGCATTCTC................................................................................................	21	1	27.00	0.00	5.00	1.00	21.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	27.00	0.00	0.00	0.00	27.00
......................................................GTGCATTGTAGTCGCACTGTC................................................................................................	21	1	27.00	1.00	5.00	0.00	21.00
......................................................GTGCATTATAGTCGCATTGTC................................................................................................	21	1	27.00	0.00	8.00	0.00	19.00
......................................................GTGCATTGTAGTCGAATTGT.................................................................................................	20	1	27.00	0.00	2.00	0.00	25.00
......................................................GTGCGTTGTAGTCGCATTGTC................................................................................................	21	1	27.00	0.00	5.00	0.00	22.00
......................................................GTGCACTGTAGTCGCATTGTC................................................................................................	21	1	26.00	0.00	7.00	0.00	19.00
......................................................GTGCATTGTAGTCGCTTTGTC................................................................................................	21	1	25.00	1.00	8.00	0.00	16.00
......................................................GTGTATTGTAGTCGCATTGTC................................................................................................	21	1	25.00	0.00	6.00	0.00	19.00
.......................................................TGCATTGTAGTCGCATTGTC................................................................................................	20	1	25.00	0.00	3.00	0.00	22.00
......................................................TTGCATTGTAGTCGCATTGT.................................................................................................	20	1	24.00	0.00	1.00	1.00	22.00
......................................................GTGAATTGTAGTCGCATTGT.................................................................................................	20	1	24.00	0.00	2.00	0.00	22.00
........................................................GCATTGTAGTCGCATTGTC................................................................................................	19	1	23.00	1.00	2.00	0.00	20.00
......................................................GTGCATTGTAGGCGCATTGTC................................................................................................	21	1	22.00	2.00	13.00	0.00	7.00
......................................................GTGCATTGTACTCGCATTGTC................................................................................................	21	1	22.00	3.00	3.00	0.00	16.00
......................................................GTGCATTGTCGTCGCATTGTC................................................................................................	21	1	22.00	4.00	8.00	0.00	10.00
......................................................GTGCATTGTAGTCGCATTATC................................................................................................	21	1	21.00	0.00	9.00	0.00	12.00
.......................................................GTCATTGTAGTCGCATTGTC................................................................................................	20	1	20.00	0.00	0.00	0.00	20.00
......................................................GTGCATTGTAGTCGCATTGC.................................................................................................	20	1	20.00	0.00	5.00	1.00	14.00
......................................................GTGCATTGTAGTCGCATTGTCTGT-------------------..........................................................................	24	1	19.00	0.00	2.00	0.00	17.00
......................................................GTGCATTGTxxTCGCATTGTC................................................................................................	19	1	18.00	0.00	0.00	0.00	18.00
......................................................GTGCATTGAAGTCGCATTGTC................................................................................................	21	1	18.00	1.00	5.00	0.00	12.00
......................................................GGGCATTGTAGTCGCATTGT.................................................................................................	20	1	18.00	1.00	12.00	1.00	4.00
......................................................GAGCATTGTAGTCGCATTGTC................................................................................................	21	1	16.00	0.00	7.00	0.00	9.00
.....................................................................................................................AATACAACTTCAGTGCAAGCT.................................	21	1	16.00	0.00	6.00	0.00	10.00
....................................................................................................................AAATACAACTTCAGTGCAAGCT.................................	22	1	15.00	0.00	0.00	0.00	15.00
....................................................................................................................CAATGCAACTTCAGTGCAAG...................................	20	1	15.00	0.00	0.00	0.00	15.00
......................................................GTGCATTGTATTCGCATTGT.................................................................................................	20	1	15.00	0.00	1.00	0.00	14.00
....................................................................................................................CAATACAACTTCAGTGCA.....................................	18	1	15.00	0.00	0.00	0.00	15.00
....................................................................................................................CAATACAACTTCAGTGCAAGCTT................................	23	1	15.00	0.00	0.00	0.00	15.00
......................................................GTGCATTGTAATCGCATTGTC................................................................................................	21	1	15.00	0.00	2.00	0.00	13.00
......................................................GTGCATTGTAGACGCATTGTC................................................................................................	21	1	14.00	1.00	4.00	1.00	8.00
......................................................GTGCATTGTAGCCGCATTGT.................................................................................................	20	1	14.00	0.00	4.00	0.00	10.00
......................................................GTGCATTCTAGTCGCATTGTC................................................................................................	21	1	14.00	0.00	2.00	0.00	12.00
......................................................GTGCATTGTAGTCGTATTGT.................................................................................................	20	1	13.00	0.00	0.00	0.00	13.00
......................................................GTGCATTGTAGTCGCTTTGT.................................................................................................	20	1	13.00	0.00	3.00	0.00	10.00
......................................................CTGCATTGTAGTCGCATTGTC................................................................................................	21	1	13.00	0.00	1.00	0.00	12.00
.........................................................CATTGTAGTCGCATTGTC................................................................................................	18	1	13.00	0.00	0.00	0.00	13.00
......................................................GTGCATTGTAGTCGCATGGTC................................................................................................	21	1	13.00	0.00	5.00	0.00	8.00
......................................................GTGCATTGTAGTCxCATTGT.................................................................................................	19	1	13.00	0.00	0.00	0.00	13.00
......................................................GTGCATTGTGGTCGCATTGT.................................................................................................	20	1	13.00	0.00	5.00	0.00	8.00
......................................................GTGCATTGTAGTCGCATA...................................................................................................	18	1	12.00	0.00	1.00	0.00	11.00
......................................................GTGCATTGTAGTCGxATTGTC................................................................................................	20	1	12.00	0.00	0.00	0.00	12.00
......................................................GTGGATTGTAGTCGCATTGTC................................................................................................	21	1	12.00	1.00	2.00	0.00	9.00
......................................................GTGCTTTGTAGTCGCATTGTC................................................................................................	21	1	12.00	1.00	3.00	1.00	7.00
......................................................GTGCATTGTAGTCGCATTGA.................................................................................................	20	1	12.00	0.00	3.00	0.00	9.00
......................................................GTGCATTGTAGTCGCATTGTG................................................................................................	21	1	12.00	0.00	4.00	1.00	7.00

droAna3

CCG--AATA---CCAGCAGACACTATACACCCGCCC-TCGGAGATGTCACGCAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCCACTT---GC-TCCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCACAAA-CAACG-CCA---ACTT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	16957.00	1678.00	11589.00	3577.00	113.00
....................................................................................................................CAATACAACTGCAGTGCAAGCT.................................	22	1	13372.00	1292.00	11802.00	260.00	18.00
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	12114.00	2906.00	6509.00	2601.00	98.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	2334.00	166.00	1889.00	262.00	17.00
....................................................................................................................CAATACAACTGCAGTGCAAGC..................................	21	1	1359.00	102.00	1085.00	161.00	11.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	1121.00	119.00	738.00	236.00	28.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	807.00	12.00	265.00	24.00	506.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	616.00	101.00	391.00	123.00	1.00
......................................................GTTCATTGTAGTCGCATTGTC................................................................................................	21	1	326.00	17.00	307.00	1.00	1.00
....................................................................................................................CAATGCAACTGCAGTGCAAGCT.................................	22	1	313.00	7.00	300.00	6.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAAGCTT................................	23	1	264.00	38.00	215.00	11.00	0.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	234.00	26.00	165.00	16.00	27.00
....................................................................................................................CAATACAACTGCAGTGCAAGAT.................................	22	1	203.00	22.00	181.00	0.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAAG...................................	20	1	192.00	18.00	170.00	3.00	1.00
....................................................................................................................CAATACAACTGCAGTGCAATCT.................................	22	1	164.00	11.00	151.00	2.00	0.00
......................................................GTTCATTGTAGTCGCATTGT.................................................................................................	20	1	156.00	12.00	143.00	1.00	0.00
......................................................GTGCATTGTAGTCGCATTGTCAA..............................................................................................	23	1	127.00	0.00	12.00	0.00	115.00
.....................................................................................................................AATACAACTGCAGTGCAAGCT.................................	21	1	123.00	10.00	111.00	2.00	0.00
....................................................................................................................CAATGCAACTGCAGTGCAAGC..................................	21	1	104.00	1.00	96.00	7.00	0.00
......................................................GTGCATTGTAGTCTCATTGTC................................................................................................	21	1	99.00	9.00	71.00	16.00	3.00
......................................................GTGCATTGTAGTCGAATTGTC................................................................................................	21	1	82.00	9.00	64.00	9.00	0.00
......................................................GCGCATTGTAGTCGCATTGTC................................................................................................	21	1	81.00	10.00	20.00	50.00	1.00
......................................................GTGCATTGTAGTCGCATTTTC................................................................................................	21	1	80.00	0.00	23.00	51.00	6.00
......................................................GGGCATTGTAGTCGCATTGTC................................................................................................	21	1	78.00	6.00	16.00	55.00	1.00
......................................................GTGCATTGTAGTCTCATTGT.................................................................................................	20	1	72.00	21.00	45.00	5.00	1.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	70.00	6.00	31.00	32.00	1.00
......................................................GCGCATTGTAGTCGCATTGT.................................................................................................	20	1	60.00	12.00	11.00	35.00	2.00
....................................................................................................................CAATACAACTTCAGTGCAAGCT.................................	22	1	60.00	9.00	51.00	0.00	0.00
......................................................GTGAATTGTAGTCGCATTGTC................................................................................................	21	1	59.00	4.00	41.00	14.00	0.00
....................................................................................................................CAATACAACTGAAGTGCAAGCT.................................	22	1	59.00	3.00	54.00	2.00	0.00
....................................................................................................................CAATACAACTGCAGTGAAAGCT.................................	22	1	57.00	4.00	53.00	0.00	0.00
......................................................GTTCATTGTAGTCGCATTGTCT...............................................................................................	22	1	57.00	1.00	55.00	1.00	0.00
......................................................GTGCATTGTAGTCGCATTGCC................................................................................................	21	1	55.00	6.00	16.00	33.00	0.00
......................................................GGGCATTGTAGTCGCATTGT.................................................................................................	20	1	55.00	9.00	5.00	40.00	1.00
......................................................GTGCATTGTAGCCGCATTGTC................................................................................................	21	1	51.00	6.00	10.00	35.00	0.00
......................................................GTGCATTGTAGTCGAATTGT.................................................................................................	20	1	51.00	5.00	42.00	4.00	0.00
......................................................GTGAATTGTAGTCGCATTGT.................................................................................................	20	1	49.00	12.00	32.00	5.00	0.00
......................................................GTGCATTGTAGTCGCATTGTTT...............................................................................................	22	1	45.00	11.00	20.00	14.00	0.00
......................................................GTGCATTGTAGTCGCATTGTCG...............................................................................................	22	1	44.00	9.00	17.00	11.00	7.00
......................................................GAGCATTGTAGTCGCATTGT.................................................................................................	20	1	42.00	7.00	2.00	33.00	0.00
......................................................GTGCATTGTAGCCGCATTGT.................................................................................................	20	1	42.00	11.00	7.00	24.00	0.00
......................................................GTGCATTGTAGTAGCATTGT.................................................................................................	20	1	41.00	13.00	24.00	4.00	0.00
....................................................................................................................CAATACAACTGCAGTTCAAGCT.................................	22	1	40.00	7.00	32.00	1.00	0.00
......................................................GTGCATTGTAGTAGCATTGTC................................................................................................	21	1	39.00	8.00	24.00	6.00	1.00
......................................................GTGCATTGTAGTCGCCTTGTC................................................................................................	21	1	38.00	4.00	4.00	28.00	2.00
......................................................GAGCATTGTAGTCGCATTGTC................................................................................................	21	1	36.00	2.00	5.00	29.00	0.00
......................................................GTGCATTGCAGTCGCATTGTC................................................................................................	21	1	36.00	3.00	14.00	19.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAATC..................................	21	1	35.00	0.00	31.00	3.00	1.00
......................................................GTGCATTGTAGTCGCATTGTG................................................................................................	21	1	35.00	8.00	21.00	5.00	1.00
......................................................GTGCATTGTAGGCGCATTGTC................................................................................................	21	1	34.00	5.00	4.00	25.00	0.00
......................................................GTGCATTGTAGACGCATTGT.................................................................................................	20	1	31.00	22.00	1.00	8.00	0.00
....................................................................................................................AAATACAACTGCAGTGCAAGCT.................................	22	1	31.00	1.00	29.00	1.00	0.00
......................................................GTGCATTGTAGTCGCATTGC.................................................................................................	20	1	30.00	5.00	4.00	20.00	1.00
....................................................................................................................CAGTACAACTGCAGTGCAAGCT.................................	22	1	30.00	1.00	29.00	0.00	0.00
......................................................GTGCATTGCAGTCGCATTGT.................................................................................................	20	1	29.00	5.00	9.00	14.00	1.00
....................................................................................................................TAATACAACTGCAGTGCAAGCT.................................	22	1	29.00	5.00	21.00	3.00	0.00
......................................................GTGCATTGAAGTCGCATTGT.................................................................................................	20	1	28.00	6.00	12.00	9.00	1.00
......................................................GTGCATTGTAGTCGCGTTGTC................................................................................................	21	1	27.00	3.00	21.00	3.00	0.00
......................................................GTGCATTGTAGTCGCATTTT.................................................................................................	20	1	27.00	1.00	9.00	15.00	2.00
....................................................................................................................CAATGCAACTGCAGTGCAAGCTT................................	23	1	27.00	0.00	23.00	4.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAAGT..................................	21	1	27.00	4.00	23.00	0.00	0.00
....................................................................................................................CAATACGACTGCAGTGCAAGCT.................................	22	1	27.00	1.00	26.00	0.00	0.00
......................................................GTTCATTGTAGTCGCATTG..................................................................................................	19	1	27.00	4.00	22.00	1.00	0.00
......................................................GTGCATTGTATTCGCATTGTC................................................................................................	21	1	26.00	0.00	22.00	3.00	1.00
......................................................GTGCATTGGAGTCGCATTGT.................................................................................................	20	1	26.00	4.00	3.00	19.00	0.00
......................................................GTGCATTGTAGTCGCCTTGT.................................................................................................	20	1	26.00	1.00	5.00	19.00	1.00
......................................................GTGCATTGTAGTTGCATTGT.................................................................................................	20	1	26.00	10.00	10.00	6.00	0.00
......................................................GTGCATTGTAGGCGCATTGT.................................................................................................	20	1	25.00	6.00	0.00	19.00	0.00
......................................................GTGCATTGTAGTCACATTGT.................................................................................................	20	1	25.00	12.00	5.00	8.00	0.00
......................................................GTGCATTGTAGTCGCATCGTC................................................................................................	21	1	25.00	4.00	12.00	9.00	0.00
......................................................GTGCATTGGAGTCGCATTGTC................................................................................................	21	1	24.00	3.00	2.00	18.00	1.00
......................................................GTGCATTGTAGACGCATTGTC................................................................................................	21	1	24.00	10.00	8.00	6.00	0.00
......................................................GTGCATTGTAGTCGCATTGTAA...............................................................................................	22	1	23.00	1.00	9.00	3.00	10.00
......................................................GTGCATTGTAGTCGCATTGTCTT..............................................................................................	23	1	23.00	1.00	21.00	1.00	0.00
......................................................GTGTATTGTAGTCGCATTGTC................................................................................................	21	1	23.00	4.00	16.00	3.00	0.00
......................................................GTGCATTGAAGTCGCATTGTC................................................................................................	21	1	23.00	5.00	9.00	9.00	0.00
......................................................GTGCATTGTAGTCGCATTTTCA...............................................................................................	22	1	22.00	0.00	1.00	0.00	21.00
......................................................GTGCATTGTAGTCGCATTCTC................................................................................................	21	1	22.00	1.00	4.00	17.00	0.00
......................................................GTGCACTGTAGTCGCATTGTC................................................................................................	21	1	22.00	1.00	19.00	2.00	0.00
......................................................GTGCATTGTAGTCGCATTGA.................................................................................................	20	1	22.00	2.00	15.00	3.00	2.00
......................................................GTGCATTGTAGTTGCATTGTC................................................................................................	21	1	22.00	2.00	16.00	4.00	0.00
......................................................GTGCATTGTGGTCGCATTGTC................................................................................................	21	1	22.00	0.00	14.00	7.00	1.00
......................................................GTGCGTTGTAGTCGCATTGTC................................................................................................	21	1	21.00	3.00	8.00	10.00	0.00
....................................................................................................................CAATACAACTGCAGTGCGAGCT.................................	22	1	21.00	2.00	19.00	0.00	0.00
......................................................GTGCATTGTAGTCGCGTTGT.................................................................................................	20	1	21.00	9.00	8.00	4.00	0.00
....................................................................................................................CAATACAACTGCATTGCAAGCT.................................	22	1	20.00	5.00	13.00	1.00	1.00
......................................................GTGCATTGTATTCGCATTGT.................................................................................................	20	1	20.00	4.00	9.00	7.00	0.00
......................................................GTGCATTGTAGTCGCATTT..................................................................................................	19	1	20.00	5.00	9.00	4.00	2.00
......................................................GTTCATTGTAGTCGCATTGTT................................................................................................	21	1	19.00	0.00	19.00	0.00	0.00
......................................................GTGCATTGTAGTCACATTGTC................................................................................................	21	1	19.00	3.00	8.00	8.00	0.00
....................................................................................................................CAATACAACTGCGGTGCAAGCT.................................	22	1	18.00	2.00	15.00	1.00	0.00
......................................................GTGCATTGTAGTCCCATTGTC................................................................................................	21	1	18.00	3.00	7.00	8.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAAGTT.................................	22	1	17.00	2.00	15.00	0.00	0.00
......................................................GTCCATTGTAGTCGCATTGTC................................................................................................	21	1	17.00	2.00	12.00	3.00	0.00
....................................................................................................................CAATGCGACTGCAGTGCAAGCT.................................	22	1	17.00	1.00	14.00	2.00	0.00
......................................................GTGCATTGTAGTCGCATTGTAT...............................................................................................	22	1	17.00	1.00	13.00	3.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAGGCT.................................	22	1	17.00	1.00	15.00	1.00	0.00
......................................................GTGCATCGTAGTCGCATTGT.................................................................................................	20	1	16.00	4.00	6.00	6.00	0.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	16.00	1.00	9.00	5.00	1.00
....................................................................................................................CAATACAACTACAGTGCAAGCT.................................	22	1	16.00	6.00	10.00	0.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAAGCG.................................	22	1	16.00	3.00	13.00	0.00	0.00

dp4

AAA--AACC---AAACCAAACACT-----------C-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCATCTT---GATTTCAGGCAATACAACTGCAATGCAAGCTCTGTGCATTTCATAAATCAACG-CCGTCCAATG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	22475.00	3934.00	698.00	7939.00	9904.00
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	4239.00	1890.00	148.00	2073.00	128.00
....................................................................................................................CAATACAACTGCAATGCAAGCT.................................	22	1	1358.00	1080.00	42.00	233.00	3.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	626.00	188.00	26.00	155.00	257.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	516.00	74.00	262.00	112.00	68.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	386.00	73.00	39.00	197.00	77.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	234.00	98.00	1.00	82.00	53.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	175.00	19.00	29.00	35.00	92.00
......................................................GTGCATTGTAGTCGCATTGTCC...............................................................................................	22	1	121.00	18.00	3.00	79.00	21.00
......................................................GGGCATTGTAGTCGCATTGTC................................................................................................	21	1	74.00	0.00	6.00	61.00	7.00
...........................................................................TGT-------------------CCATCTT---GATTTCAGG.......................................................	19	1	71.00	1.00	66.00	4.00	0.00
......................................................GTGCATTGTAGTCGCATTGCC................................................................................................	21	1	66.00	4.00	3.00	43.00	16.00
......................................................GTGCATTGTAGTCGCATTTTC................................................................................................	21	1	66.00	2.00	3.00	61.00	0.00
......................................................GCGCATTGTAGTCGCATTGTC................................................................................................	21	1	63.00	14.00	7.00	37.00	5.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	60.00	0.00	0.00	39.00	21.00
......................................................GTGCATTGTAGTCGCATTGTCAA..............................................................................................	23	1	48.00	5.00	29.00	14.00	0.00
......................................................GTGCATTGTAGTCGCCTTGTC................................................................................................	21	1	43.00	2.00	5.00	36.00	0.00
......................................................GTGCATTGTAGTCGCATTGTAA...............................................................................................	22	1	42.00	11.00	8.00	20.00	3.00
......................................................GTGCATTGTAGCCGCATTGTC................................................................................................	21	1	41.00	8.00	4.00	27.00	2.00
......................................................TTGCATTGTAGTCGCATTGTC................................................................................................	21	1	39.00	9.00	0.00	6.00	24.00
......................................................GTGCATTGTAGTAGCATTGTC................................................................................................	21	1	37.00	3.00	1.00	15.00	18.00
......................................................GTACATTGTAGTCGCATTGTC................................................................................................	21	1	35.00	1.00	2.00	26.00	6.00
......................................................GAGCATTGTAGTCGCATTGTC................................................................................................	21	1	31.00	2.00	2.00	27.00	0.00
......................................................GTGCATTGTAGTCGCATTGAC................................................................................................	21	1	29.00	0.00	0.00	6.00	23.00
......................................................GTGCATTGCAGTCGCATTGTC................................................................................................	21	1	27.00	7.00	0.00	16.00	4.00
......................................................GTGCATTGTAGTCGCATCGTC................................................................................................	21	1	26.00	4.00	0.00	19.00	3.00
......................................................GTGCATTGTAGTCTCATTGTC................................................................................................	21	1	26.00	5.00	2.00	9.00	10.00
......................................................GTGCATTGTAGTCGCATTGTCG...............................................................................................	22	1	24.00	3.00	5.00	14.00	2.00
......................................................GTGCATTGTAGTCGCATTGTCTG..............................................................................................	23	1	24.00	7.00	1.00	14.00	2.00
......................................................GTGCATTGTAGTCGAATTGTC................................................................................................	21	1	24.00	0.00	3.00	16.00	5.00
......................................................GTGCATTGTAGTGGCATTGTC................................................................................................	21	1	24.00	0.00	0.00	2.00	22.00
.....................................................CGTGCATTGTAGTCGCATTGTC................................................................................................	22	1	23.00	6.00	2.00	12.00	3.00
......................................................GTCCATTGTAGTCGCATTGTC................................................................................................	21	1	23.00	4.00	0.00	13.00	6.00
....................................................................................................................CAATACAACTGCAATGCAAGC..................................	21	1	23.00	8.00	5.00	9.00	1.00
......................................................GGGCATTGTAGTCGCATTGT.................................................................................................	20	1	21.00	0.00	2.00	19.00	0.00
......................................................GTTCATTGTAGTCGCATTGTC................................................................................................	21	1	21.00	12.00	0.00	5.00	4.00
......................................................GTGCATTGTAGGCGCATTGTC................................................................................................	21	1	20.00	0.00	4.00	15.00	1.00
....................................................................................................................CAATACAACTGCAATGCAAG...................................	20	1	19.00	10.00	4.00	5.00	0.00
......................................................GTGCATTGTAGTCGCATTGC.................................................................................................	20	1	19.00	4.00	0.00	11.00	4.00
......................................................GTGCATTGTAGTCGCATTCTC................................................................................................	21	1	18.00	2.00	0.00	16.00	0.00
......................................................GTGCATTGTAGTCGCTTTGTC................................................................................................	21	1	18.00	4.00	3.00	10.00	1.00
.....................................................................................................................AATACAACTGCAATGCAAGCT.................................	21	1	18.00	16.00	0.00	2.00	0.00
......................................................GTGCATTGTAGTCGCCTTGT.................................................................................................	20	1	18.00	4.00	2.00	12.00	0.00
......................................................GTGCATTGGAGTCGCATTGTC................................................................................................	21	1	18.00	0.00	3.00	11.00	4.00
......................................................GTGCATTGTAGTCGCATTGGC................................................................................................	21	1	17.00	0.00	1.00	6.00	10.00
......................................................GTGCATTGTGGTCGCATTGTC................................................................................................	21	1	17.00	3.00	2.00	7.00	5.00
......................................................GTGCATTGTAGTCGCATTTT.................................................................................................	20	1	16.00	2.00	0.00	14.00	0.00
......................................................GTGCATTGTAGTTGCATTGTC................................................................................................	21	1	16.00	3.00	2.00	7.00	4.00
......................................................GTGCATTGTAGTCGCACTGTC................................................................................................	21	1	16.00	4.00	2.00	7.00	3.00
......................................................CTGCATTGTAGTCGCATTGTC................................................................................................	21	1	16.00	2.00	2.00	6.00	6.00
......................................................GTGCATTGTAGCCGCATTGT.................................................................................................	20	1	15.00	2.00	1.00	12.00	0.00
......................................................GTGCATTGTAGTCGTATTGTC................................................................................................	21	1	14.00	3.00	2.00	7.00	2.00
......................................................ATGCATTGTAGTCGCATTGTC................................................................................................	21	1	14.00	1.00	3.00	7.00	3.00
....................................................................................................................CAATGCAACTGCAATGCAAGCT.................................	22	1	14.00	3.00	0.00	11.00	0.00
......................................................GTGCATTGTAGTCCCATTGTC................................................................................................	21	1	14.00	0.00	1.00	12.00	1.00
......................................................GCGCATTGTAGTCGCATTGT.................................................................................................	20	1	13.00	6.00	0.00	6.00	1.00
....................................................................................................................CAATACAACTGCAATGCAAGCTT................................	23	1	13.00	7.00	1.00	5.00	0.00
......................................................GTGCATTGTAGTCGCGTTGTC................................................................................................	21	1	13.00	2.00	0.00	9.00	2.00
......................................................GTGCATTGTCGTCGCATTGTC................................................................................................	21	1	12.00	1.00	3.00	8.00	0.00
......................................................GTGCACTGTAGTCGCATTGTC................................................................................................	21	1	12.00	2.00	1.00	4.00	5.00
......................................................GTGCATTGAAGTCGCATTGTC................................................................................................	21	1	11.00	2.00	0.00	6.00	3.00
......................................................GTGAATTGTAGTCGCATTGTC................................................................................................	21	1	11.00	2.00	2.00	7.00	0.00
......................................................GTGCTTTGTAGTCGCATTGTC................................................................................................	21	1	11.00	2.00	0.00	5.00	4.00
......................................................GTGCCTTGTAGTCGCATTGTC................................................................................................	21	1	10.00	2.00	0.00	8.00	0.00
......................................................GTGCATTGTAGTCACATTGTC................................................................................................	21	1	10.00	2.00	3.00	2.00	3.00
......................................................GTGCGTTGTAGTCGCATTGTC................................................................................................	21	1	10.00	0.00	1.00	6.00	3.00
......................................................GTGCATTGTATTCGCATTGTC................................................................................................	21	1	10.00	5.00	0.00	5.00	0.00
........................................................GCATTGTAGTCGCATTGTC................................................................................................	19	1	10.00	1.00	0.00	2.00	7.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	10.00	6.00	0.00	2.00	2.00
......................................................GTGCATTGTAGTxxCATTGTC................................................................................................	19	1	9.00	7.00	0.00	0.00	2.00
......................................................GTGTATTGTAGTCGCATTGTC................................................................................................	21	1	9.00	2.00	1.00	6.00	0.00
......................................................GGGCATTGTAGGCGCATTGTC................................................................................................	21	1	8.00	0.00	1.00	7.00	0.00
.........................................................CATTGTAGTCGCATTGTC................................................................................................	18	1	8.00	2.00	0.00	0.00	6.00
......................................................GTGCATTGTAGGCGCATTGT.................................................................................................	20	1	8.00	0.00	1.00	7.00	0.00
.....................................................CGTGCATTGTAGTCGCATTGT.................................................................................................	21	1	8.00	7.00	0.00	1.00	0.00
......................................................GTGCATTGTAGACGCATTGTC................................................................................................	21	1	8.00	1.00	2.00	5.00	0.00
......................................................GTGCATTGTAGTCGCATTGTTT...............................................................................................	22	1	8.00	4.00	0.00	3.00	1.00
......................................................GTGCATTGTAGTCGCTTTGT.................................................................................................	20	1	8.00	3.00	4.00	1.00	0.00
......................................................GTGCATTGTAGTCTCATTGT.................................................................................................	20	1	7.00	3.00	0.00	4.00	0.00
....................................................................................................................CAATACAACTGCAATGCAA....................................	19	1	7.00	1.00	0.00	6.00	0.00
......................................................GTGCATTGTAGTCGCATGGTC................................................................................................	21	1	7.00	0.00	1.00	6.00	0.00
......................................................GTGCATTGTAGTCxCATTGTC................................................................................................	20	1	7.00	6.00	0.00	0.00	1.00
......................................................GTGCATTGTAGTCGCATTGTG................................................................................................	21	1	7.00	0.00	0.00	7.00	0.00
......................................................GGGCAGTGTAGTCGCATTGTC................................................................................................	21	1	7.00	0.00	0.00	7.00	0.00
......................................................GTGCATTTTAGTCGCATTGTC................................................................................................	21	1	7.00	1.00	0.00	2.00	4.00
.....................................................GGTGCATTGTAGTCGCATTGTC................................................................................................	22	1	7.00	0.00	1.00	2.00	4.00
....................................................................................................................CAGTACAACTGCAATGCAAGCT.................................	22	1	7.00	4.00	0.00	3.00	0.00
......................................................GTGCATTGTACTCGCATTGTC................................................................................................	21	1	7.00	2.00	1.00	3.00	1.00
......................................................GAGCATTGTAGTCGCATTGT.................................................................................................	20	1	6.00	1.00	0.00	5.00	0.00
......................................................GTGCATTGTAGTCGCATTCT.................................................................................................	20	1	6.00	0.00	0.00	6.00	0.00
......................................................GGGCATTGTAGCCGCATTGTC................................................................................................	21	1	6.00	0.00	0.00	6.00	0.00
......................................................GTGCATTATAGTCGCATTGTC................................................................................................	21	1	6.00	0.00	0.00	2.00	4.00
......................................................GTGCATTGTAGTCGCATTT..................................................................................................	19	1	6.00	0.00	0.00	6.00	0.00
......................................................GTGCATTGTAGTCGAATTGT.................................................................................................	20	1	6.00	0.00	0.00	6.00	0.00
......................................................GTGCATTGTAGTCGTTTT...................................................................................................	18	1	6.00	1.00	0.00	4.00	1.00
......................................................GTGCATTGCAGTCGCATTGT.................................................................................................	20	1	6.00	1.00	0.00	5.00	0.00
......................................................GTGCATTGTAGTCGCATTGA.................................................................................................	20	1	6.00	0.00	3.00	2.00	1.00
......................................................GTGCATTGTAGTCGCATTATC................................................................................................	21	1	6.00	0.00	0.00	4.00	2.00
......................................................TTGCATTGTAGTCGCATTGT.................................................................................................	20	1	6.00	4.00	0.00	2.00	0.00
.......................................................TGCATTGTAGTCGCATTGTC................................................................................................	20	1	6.00	1.00	0.00	2.00	3.00
......................................................GTGCATTGTAGTTGCATTGT.................................................................................................	20	1	5.00	0.00	1.00	4.00	0.00

droPer1

AAA--AACC---AAACCAAACACT-----------C-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCATCTT---GATTTCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCATAAATCAACG-CCGTCCAATG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	36219.00	6848.00	371.00	4901.00	11689.00	12410.00
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	10753.00	4137.00	77.00	1311.00	5146.00	82.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	981.00	369.00	12.00	109.00	425.00	66.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	557.00	103.00	138.00	73.00	177.00	66.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	464.00	146.00	18.00	68.00	197.00	35.00
....................................................................................................................CAATACAACTGCAGTGCAAGCT.................................	22	1	322.00	73.00	30.00	81.00	126.00	12.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	296.00	128.00	0.00	31.00	133.00	4.00
......................................................GGGCATTGTAGTCGCATTGTC................................................................................................	21	1	296.00	2.00	1.00	29.00	256.00	8.00
......................................................GTGCATTGTAGTCGCATTTTC................................................................................................	21	1	207.00	0.00	1.00	43.00	162.00	1.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	163.00	29.00	9.00	19.00	42.00	64.00
......................................................GTGCATTGTAGCCGCATTGTC................................................................................................	21	1	162.00	14.00	0.00	22.00	111.00	15.00
......................................................GCGCATTGTAGTCGCATTGTC................................................................................................	21	1	160.00	13.00	2.00	15.00	121.00	9.00
......................................................GTGCATTGTAGTCGCATTGCC................................................................................................	21	1	151.00	3.00	0.00	30.00	102.00	16.00
......................................................GAGCATTGTAGTCGCATTGTC................................................................................................	21	1	131.00	1.00	1.00	9.00	117.00	3.00
......................................................GGGCATTGTAGTCGCATTGT.................................................................................................	20	1	114.00	0.00	1.00	5.00	108.00	0.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	107.00	3.00	0.00	11.00	82.00	11.00
........................................................GCATTGTAGTCGCATTGTC................................................................................................	19	1	102.00	6.00	1.00	0.00	3.00	92.00
......................................................GTGCATTGTAGTCGCCTTGTC................................................................................................	21	1	99.00	0.00	3.00	9.00	87.00	0.00
......................................................GTGCATTGTAGTCGCATTGTCC...............................................................................................	22	1	93.00	11.00	6.00	25.00	46.00	5.00
......................................................GTGCATTGTAGGCGCATTGTC................................................................................................	21	1	88.00	0.00	0.00	4.00	82.00	2.00
......................................................TTGCATTGTAGTCGCATTGTC................................................................................................	21	1	87.00	0.00	0.00	5.00	13.00	69.00
....................................................................................................................CAATACAACTGCAGTGCAAGC..................................	21	1	80.00	12.00	4.00	21.00	37.00	6.00
......................................................GTGCATTGTAGTAGCATTGTC................................................................................................	21	1	79.00	0.00	1.00	6.00	33.00	39.00
......................................................GTGCATTGGAGTCGCATTGTC................................................................................................	21	1	72.00	5.00	0.00	0.00	62.00	5.00
......................................................GTGCATTGTAGTCGCATTGTCTG..............................................................................................	23	1	67.00	24.00	2.00	12.00	27.00	2.00
......................................................GTGCATTGTAGTCTCATTGTC................................................................................................	21	1	67.00	9.00	0.00	10.00	29.00	19.00
......................................................GTGCATTGTAGTCGCATTGTCAA..............................................................................................	23	1	64.00	11.00	22.00	11.00	19.00	1.00
......................................................GTGCATTGTAGTCGCATTGTAA...............................................................................................	22	1	61.00	14.00	4.00	10.00	30.00	3.00
......................................................GTGCATTGTAGTCGCATTCTC................................................................................................	21	1	60.00	0.00	0.00	12.00	48.00	0.00
......................................................GAGCATTGTAGTCGCATTGT.................................................................................................	20	1	60.00	4.00	0.00	5.00	51.00	0.00
......................................................GTGCATTGTAGTCGCATTGGC................................................................................................	21	1	59.00	1.00	0.00	4.00	45.00	9.00
......................................................GTGCATTGCAGTCGCATTGTC................................................................................................	21	1	59.00	6.00	0.00	3.00	44.00	6.00
......................................................GTGCATTGTAGTCGCATTGC.................................................................................................	20	1	56.00	7.00	1.00	10.00	38.00	0.00
......................................................GTGCATTGAAGTCGCATTGTC................................................................................................	21	1	53.00	13.00	0.00	8.00	31.00	1.00
......................................................GTGCGTTGTAGTCGCATTGTC................................................................................................	21	1	52.00	1.00	1.00	8.00	42.00	0.00
......................................................GTGCATTGTAGCCGCATTGT.................................................................................................	20	1	50.00	3.00	0.00	2.00	44.00	1.00
......................................................GCGCATTGTAGTCGCATTGT.................................................................................................	20	1	50.00	4.00	0.00	2.00	44.00	0.00
......................................................GTGCATTGTAGTCGCATTGAC................................................................................................	21	1	50.00	2.00	0.00	3.00	5.00	40.00
......................................................GTGCATTGTAGTCGCATTGTCG...............................................................................................	22	1	48.00	7.00	1.00	3.00	33.00	4.00
......................................................GTGCAGTGTAGTCGCATTGTC................................................................................................	21	1	48.00	0.00	1.00	21.00	26.00	0.00
......................................................GTGCATTGTAGTCGCCTTGT.................................................................................................	20	1	47.00	0.00	0.00	4.00	43.00	0.00
......................................................GTGCATTGTAGTCGCATTTT.................................................................................................	20	1	46.00	0.00	0.00	7.00	39.00	0.00
......................................................GTGCACTGTAGTCGCATTGTC................................................................................................	21	1	46.00	7.00	1.00	18.00	12.00	8.00
......................................................GTGCATTGTAGTCGAATTGTC................................................................................................	21	1	46.00	2.00	0.00	2.00	42.00	0.00
......................................................GTGCATTGGAGTCGCATTGT.................................................................................................	20	1	46.00	7.00	0.00	2.00	37.00	0.00
......................................................GTGCATTGTAGTCCCATTGTC................................................................................................	21	1	46.00	1.00	0.00	3.00	31.00	11.00
......................................................ATGCATTGTAGTCGCATTGTC................................................................................................	21	1	44.00	2.00	1.00	9.00	21.00	11.00
......................................................GTGCATTGTAGTTGCATTGTC................................................................................................	21	1	44.00	2.00	0.00	7.00	30.00	5.00
......................................................GTGCATTGTAGTCACATTGTC................................................................................................	21	1	42.00	7.00	0.00	8.00	25.00	2.00
......................................................GTGCATTGTAGTCGCGTTGTC................................................................................................	21	1	40.00	6.00	3.00	5.00	23.00	3.00
......................................................GTGCATTGTAGGCGCATTGT.................................................................................................	20	1	39.00	1.00	0.00	1.00	37.00	0.00
......................................................GTGCATTGTAGTCGTATTGTC................................................................................................	21	1	39.00	24.00	0.00	2.00	11.00	2.00
......................................................GTGCATTGTAGTCGCTTTGTC................................................................................................	21	1	38.00	11.00	1.00	3.00	23.00	0.00
......................................................GTGCATTGTAGTGGCATTGTC................................................................................................	21	1	37.00	1.00	0.00	4.00	5.00	27.00
......................................................GTTCATTGTAGTCGCATTGTC................................................................................................	21	1	35.00	13.00	0.00	2.00	11.00	9.00
.....................................................CGTGCATTGTAGTCGCATTGTC................................................................................................	22	1	33.00	0.00	1.00	8.00	20.00	4.00
...........................................................................TGT-------------------CCATCTT---GATTTCAGG.......................................................	19	1	33.00	0.00	25.00	2.00	3.00	3.00
......................................................GTGCATTGTGGTCGCATTGTC................................................................................................	21	1	32.00	9.00	1.00	3.00	14.00	5.00
.......................................................TGCATTGTAGTCGCATTGTC................................................................................................	20	1	32.00	5.00	0.00	5.00	5.00	17.00
......................................................GTGCATTGCAGTCGCATTGT.................................................................................................	20	1	32.00	4.00	0.00	1.00	27.00	0.00
......................................................GTGTATTGTAGTCGCATTGTC................................................................................................	21	1	30.00	5.00	0.00	2.00	20.00	3.00
......................................................GTGCATTGTAGTCGCATCGTC................................................................................................	21	1	30.00	6.00	2.00	3.00	17.00	2.00
......................................................GTGCATTGTAGTCTCATTGT.................................................................................................	20	1	29.00	6.00	1.00	3.00	19.00	0.00
......................................................GTGCATTGTCGTCGCATTGTC................................................................................................	21	1	29.00	0.00	1.00	8.00	19.00	1.00
......................................................GTGCCTTGTAGTCGCATTGTC................................................................................................	21	1	29.00	0.00	0.00	2.00	27.00	0.00
......................................................GTGCATTGTAGTCGCTTTGT.................................................................................................	20	1	29.00	12.00	0.00	0.00	17.00	0.00
......................................................GGGCATTGTAGTCGCCTTGTC................................................................................................	21	1	28.00	0.00	0.00	1.00	27.00	0.00
......................................................GTGCATTGTAGTCGCATTATC................................................................................................	21	1	28.00	3.00	0.00	12.00	13.00	0.00
......................................................GTGCATTGTAGTCGCACTGTC................................................................................................	21	1	28.00	1.00	0.00	5.00	22.00	0.00
......................................................CTGCATTGTAGTCGCATTGTC................................................................................................	21	1	28.00	2.00	0.00	2.00	12.00	12.00
......................................................GTGCATTGTAGTCGCATTCT.................................................................................................	20	1	26.00	1.00	0.00	3.00	22.00	0.00
......................................................GTGCACTGTAGTCGCATTGT.................................................................................................	20	1	25.00	5.00	0.00	8.00	12.00	0.00
....................................................................................................................CAATGCAACTGCAGTGCAAGCT.................................	22	1	25.00	5.00	0.00	8.00	12.00	0.00
......................................................GTGCATTGTAGTCGCATGGTC................................................................................................	21	1	24.00	0.00	0.00	3.00	21.00	0.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	23.00	1.00	0.00	5.00	14.00	3.00
......................................................GTACATTGTAGTCGCATTGTC................................................................................................	21	1	23.00	3.00	0.00	3.00	10.00	7.00
......................................................GTGCATTGTAGACGCATTGTC................................................................................................	21	1	23.00	1.00	0.00	0.00	18.00	4.00
......................................................GTCCATTGTAGTCGCATTGTC................................................................................................	21	1	22.00	7.00	0.00	0.00	6.00	9.00
......................................................GTGCGTTGTAGTCGCATTGT.................................................................................................	20	1	22.00	4.00	0.00	1.00	17.00	0.00
......................................................GTGCATTGTAGTCGTATTGT.................................................................................................	20	1	22.00	17.00	0.00	2.00	3.00	0.00
......................................................GTGCATTGTAGTCGCATTGG.................................................................................................	20	1	20.00	1.00	0.00	0.00	12.00	7.00
......................................................GTGCATTGAAGTCGCATTGT.................................................................................................	20	1	20.00	5.00	0.00	1.00	14.00	0.00
......................................................GTGCATTGTAATCGCATTGTC................................................................................................	21	1	19.00	4.00	0.00	0.00	10.00	5.00
......................................................GTGCATTGTAGTAGCATTGT.................................................................................................	20	1	18.00	0.00	1.00	2.00	15.00	0.00
......................................................GTGCATTGTATTCGCATTGTC................................................................................................	21	1	18.00	4.00	0.00	1.00	11.00	2.00
......................................................GTGCTTTGTAGTCGCATTGTC................................................................................................	21	1	18.00	2.00	1.00	1.00	12.00	2.00
......................................................GTGCATTGTACTCGCATTGTC................................................................................................	21	1	18.00	2.00	0.00	1.00	14.00	1.00
......................................................GTGCAATGTAGTCGCATTGTC................................................................................................	21	1	18.00	1.00	0.00	12.00	4.00	1.00
......................................................GTGCAGTGTAGTCGCATTGT.................................................................................................	20	1	18.00	0.00	0.00	6.00	12.00	0.00
......................................................GTGAATTGTAGTCGCATTGTC................................................................................................	21	1	16.00	0.00	0.00	3.00	13.00	0.00
......................................................GTGGATTGTAGTCGCATTGTC................................................................................................	21	1	16.00	2.00	1.00	0.00	12.00	1.00
......................................................GTGCATTGTAGTCGAATTGT.................................................................................................	20	1	16.00	3.00	0.00	1.00	12.00	0.00
......................................................GAGCATTGTAGGCGCATTGTC................................................................................................	21	1	16.00	0.00	0.00	3.00	13.00	0.00
......................................................GTGCATTATAGTCGCATTGTC................................................................................................	21	1	15.00	5.00	0.00	5.00	3.00	2.00
......................................................GTGCATTGTAGTCGCGTTGT.................................................................................................	20	1	15.00	2.00	0.00	1.00	12.00	0.00
......................................................GGGCATTGTAGTCGCATTGTT................................................................................................	21	1	15.00	0.00	0.00	0.00	15.00	0.00
......................................................GTGCATTGTAGTCGCATTGA.................................................................................................	20	1	14.00	4.00	2.00	2.00	4.00	2.00
......................................................GTGCCTTGTAGTCGCATTGT.................................................................................................	20	1	14.00	0.00	0.00	2.00	12.00	0.00
......................................................GGGCAGTGTAGTCGCATTGTC................................................................................................	21	1	13.00	0.00	0.00	1.00	12.00	0.00
......................................................GGGCATTGAAGTCGCATTGTC................................................................................................	21	1	13.00	0.00	0.00	1.00	12.00	0.00
......................................................GTTCATTGTAGTCGCATTGT.................................................................................................	20	1	12.00	9.00	0.00	0.00	3.00	0.00

droWil1

CGG--AACC---TAAACAAAT------------------TGAAGTTACACGAAGGTGCATTGTAGTCGCATTGTCTGTGCTCCAAAAAAAAAAAACCCCCAGTT--TCTATTCAGGCAATACAACTGCAGTGCAAGCTTCGTGTGACTTATAAG-CAACG-GCA---AATA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	210385.00	645.00	3455.00	8192.00	198093.00
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	6735.00	668.00	660.00	3275.00	2132.00
....................................................................................................................CAATACAACTGCAGTGCAAGCT.................................	22	1	3496.00	30.00	543.00	2763.00	160.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	3093.00	32.00	121.00	604.00	2336.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	2172.00	34.00	115.00	407.00	1616.00
......................................................TTGCATTGTAGTCGCATTGTC................................................................................................	21	1	874.00	1.00	2.00	20.00	851.00
......................................................GTGCATTGTAGTCGCATTGTCC...............................................................................................	22	1	834.00	3.00	13.00	211.00	607.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	795.00	0.00	42.00	60.00	693.00
......................................................GTGCATTGTAGTCGCATTGAC................................................................................................	21	1	772.00	0.00	0.00	6.00	766.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	707.00	5.00	354.00	89.00	259.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	618.00	20.00	5.00	104.00	489.00
......................................................GTGCATTGTAGTGGCATTGTC................................................................................................	21	1	558.00	0.00	2.00	1.00	555.00
......................................................GTGCATTGTAGTAGCATTGTC................................................................................................	21	1	498.00	0.00	4.00	27.00	467.00
......................................................GTGCATTGTAGTCGCATTGCC................................................................................................	21	1	339.00	4.00	5.00	31.00	299.00
....................................................................................................................CAATACAACTGCAGTGCAAGC..................................	21	1	270.00	4.00	26.00	116.00	124.00
......................................................CTGCATTGTAGTCGCATTGTC................................................................................................	21	1	247.00	0.00	2.00	17.00	228.00
......................................................GTTCATTGTAGTCGCATTGTC................................................................................................	21	1	235.00	1.00	4.00	11.00	219.00
......................................................GTGCATTGTAGTCTCATTGTC................................................................................................	21	1	212.00	1.00	5.00	16.00	190.00
......................................................GTGCATTGTAGCCGCATTGTC................................................................................................	21	1	187.00	0.00	7.00	37.00	143.00
......................................................GCGCATTGTAGTCGCATTGTC................................................................................................	21	1	179.00	1.00	14.00	12.00	152.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	174.00	0.00	11.00	31.00	132.00
......................................................GTGCATTGTAGTCGCATTGTCAA..............................................................................................	23	1	169.00	0.00	166.00	3.00	0.00
.......................................................TGCATTGTAGTCGCATTGTC................................................................................................	20	1	166.00	0.00	2.00	5.00	159.00
......................................................GTGCATTGTAGTTGCATTGTC................................................................................................	21	1	158.00	0.00	5.00	12.00	141.00
......................................................GTGCATTGTAGTCGCATTGGC................................................................................................	21	1	156.00	0.00	0.00	1.00	155.00
......................................................ATGCATTGTAGTCGCATTGTC................................................................................................	21	1	151.00	0.00	3.00	11.00	137.00
......................................................GTGCATTGTAGTCGCATTGG.................................................................................................	20	1	136.00	0.00	0.00	3.00	133.00
......................................................GTGCATTGTAGTCGCATTGC.................................................................................................	20	1	112.00	3.00	0.00	10.00	99.00
......................................................GTGCATTGTAGTCGCATTGTCTG..............................................................................................	23	1	110.00	3.00	19.00	41.00	47.00
......................................................GTGCACTGTAGTCGCATTGTC................................................................................................	21	1	109.00	1.00	4.00	10.00	94.00
......................................................GTGCATTGTGGTCGCATTGTC................................................................................................	21	1	109.00	1.00	1.00	11.00	96.00
......................................................GTGCATTGTAGTCACATTGTC................................................................................................	21	1	108.00	1.00	1.00	19.00	87.00
........................................................GCATTGTAGTCGCATTGTC................................................................................................	19	1	107.00	4.00	6.00	7.00	90.00
......................................................GTGCATTGCAGTCGCATTGTC................................................................................................	21	1	102.00	2.00	7.00	18.00	75.00
......................................................GGGCATTGTAGTCGCATTGTC................................................................................................	21	1	101.00	1.00	4.00	3.00	93.00
......................................................GTGCATTGTAGTCCCATTGTC................................................................................................	21	1	95.00	0.00	5.00	4.00	86.00
......................................................GTCCATTGTAGTCGCATTGTC................................................................................................	21	1	92.00	1.00	2.00	8.00	81.00
......................................................GTGCATTGGAGTCGCATTGTC................................................................................................	21	1	92.00	0.00	2.00	3.00	87.00
......................................................GTGCGTTGTAGTCGCATTGTC................................................................................................	21	1	88.00	1.00	1.00	9.00	77.00
......................................................GTGCATTGTAGTCGCATTGTAA...............................................................................................	22	1	85.00	0.00	76.00	4.00	5.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	82.00	3.00	6.00	7.00	66.00
.........................................................CATTGTAGTCGCATTGTC................................................................................................	18	1	82.00	0.00	0.00	0.00	82.00
......................................................GTGCATTGTAGTCGCATTATC................................................................................................	21	1	77.00	0.00	2.00	18.00	57.00
......................................................GTACATTGTAGTCGCATTGTC................................................................................................	21	1	77.00	1.00	1.00	10.00	65.00
......................................................GTGCATTGTAGTCGTATTGTC................................................................................................	21	1	73.00	0.00	0.00	19.00	54.00
......................................................GTGCATTTTAGTCGCATTGTC................................................................................................	21	1	69.00	0.00	2.00	5.00	62.00
......................................................GTGCATTGTAGGCGCATTGTC................................................................................................	21	1	67.00	1.00	2.00	5.00	59.00
......................................................GTGCATTGTAGTCGAATTGTC................................................................................................	21	1	67.00	2.00	1.00	36.00	28.00
......................................................GTGCATTGTAGTCGCATTGTCG...............................................................................................	22	1	67.00	6.00	5.00	13.00	43.00
......................................................GTGCATTGTATTCGCATTGTC................................................................................................	21	1	67.00	1.00	7.00	5.00	54.00
......................................................GTGCATTGTAGTCxCATTGTC................................................................................................	20	1	65.00	0.00	1.00	5.00	59.00
......................................................GTGTATTGTAGTCGCATTGTC................................................................................................	21	1	64.00	1.00	6.00	2.00	55.00
......................................................GTGCATTGTAGTxxCATTGTC................................................................................................	19	1	60.00	1.00	2.00	14.00	43.00
......................................................GAGCATTGTAGTCGCATTGTC................................................................................................	21	1	60.00	0.00	2.00	6.00	52.00
......................................................GTGCATTATAGTCGCATTGTC................................................................................................	21	1	59.00	0.00	1.00	16.00	42.00
......................................................GTGCATTGAAGTCGCATTGTC................................................................................................	21	1	56.00	0.00	4.00	15.00	37.00
......................................................GTGCATTGTAGACGCATTGTC................................................................................................	21	1	56.00	0.00	3.00	17.00	36.00
......................................................GTGCATTGTAGTCGCGTTGTC................................................................................................	21	1	53.00	0.00	0.00	5.00	48.00
.......................................................GTCATTGTAGTCGCATTGTC................................................................................................	20	1	50.00	1.00	0.00	7.00	42.00
......................................................GTTCATTGTAGTCGCATTGTCT...............................................................................................	22	1	50.00	0.00	0.00	1.00	49.00
......................................................GTGAATTGTAGTCGCATTGTC................................................................................................	21	1	49.00	0.00	5.00	38.00	6.00
......................................................GTGCATTCTAGTCGCATTGTC................................................................................................	21	1	49.00	0.00	2.00	6.00	41.00
.....................................................CGTGCATTGTAGTCGCATTGTC................................................................................................	22	1	48.00	0.00	6.00	16.00	26.00
......................................................GTGCATTGTAGTCGCACTGTC................................................................................................	21	1	47.00	0.00	5.00	5.00	37.00
....................................................AGGTGCATTGTAGTCGCATTGTC................................................................................................	23	1	44.00	0.00	5.00	10.00	29.00
......................................................GTGCATTGTACTCGCATTGTC................................................................................................	21	1	42.00	1.00	0.00	8.00	33.00
....................................................................................................................CAATGCAACTGCAGTGCAAGCT.................................	22	1	38.00	0.00	3.00	32.00	3.00
......................................................GTGCATTGTAGTCGCATTTTC................................................................................................	21	1	37.00	2.00	0.00	9.00	26.00
......................................................GTGCATTGTAATCGCATTGTC................................................................................................	21	1	37.00	0.00	1.00	2.00	34.00
......................................................GTGCATTGTAGTCGCATCGTC................................................................................................	21	1	36.00	0.00	3.00	5.00	28.00
......................................................GTGCATTGTAGTCGCATTCTC................................................................................................	21	1	35.00	1.00	3.00	8.00	23.00
......................................................GTGCCTTGTAGTCGCATTGTC................................................................................................	21	1	33.00	1.00	12.00	13.00	7.00
.....................................................................................................................AATACAACTGCAGTGCAAGCT.................................	21	1	33.00	0.00	7.00	24.00	2.00
......................................................GTGCATTGTAGTCGCATGG..................................................................................................	19	1	30.00	0.00	0.00	0.00	30.00
....................................................................................................................CAATACAACTGCAGTGCAAGCTC................................	23	1	28.00	0.00	0.00	7.00	21.00
......................................................GTGCATTGTxxTCGCATTGTC................................................................................................	19	1	27.00	0.00	2.00	3.00	22.00
......................................................GTGCATTGTAGTCGCATTGTCCC..............................................................................................	23	1	25.00	0.00	0.00	12.00	13.00
......................................................GTGCATTGTAGTCGCTTTGTC................................................................................................	21	1	23.00	1.00	0.00	6.00	16.00
......................................................TTGCATTGTAGTCGCATTGT.................................................................................................	20	1	23.00	0.00	3.00	7.00	13.00
....................................................................................................................CAATACAACTGCAGTGCAAG...................................	20	1	22.00	0.00	9.00	9.00	4.00
....................................................AGGTGCATTGTAGTCGCATTGT.................................................................................................	22	1	22.00	0.00	5.00	15.00	2.00
......................................................GTGCATTGTAGTCGCATTGTG................................................................................................	21	1	21.00	0.00	0.00	2.00	19.00
......................................................GTGCATTGTAGTCGTATTGT.................................................................................................	20	1	21.00	0.00	0.00	21.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAAGCTT................................	23	1	19.00	0.00	1.00	14.00	4.00
......................................................TTGCATTGTAGTCGCATTG..................................................................................................	19	1	19.00	0.00	0.00	1.00	18.00
......................................................GTGCATTGTAGTCGAATTGT.................................................................................................	20	1	19.00	0.00	0.00	17.00	2.00
......................................................GTGCATTGTAGTCTCATTGT.................................................................................................	20	1	18.00	2.00	2.00	13.00	1.00
....................................................................................................................CAATACAACTTCAGTGCAAGCT.................................	22	1	18.00	0.00	7.00	11.00	0.00
......................................................GTGGATTGTAGTCGCATTGTC................................................................................................	21	1	18.00	0.00	1.00	1.00	16.00
....................................................................................................................CAATACAACTGCAGTGCAAGCC.................................	22	1	18.00	0.00	0.00	2.00	16.00
......................................................GTGCTTTGTAGTCGCATTGTC................................................................................................	21	1	18.00	1.00	2.00	0.00	15.00
......................................................GTGCATTGTAGTCGxATTGTC................................................................................................	20	1	18.00	0.00	0.00	7.00	11.00
......................................................GTGCATxxTAGTCGCATTGTC................................................................................................	19	1	16.00	0.00	1.00	3.00	12.00
......................................................GTGCATTGTAGTCGCATTGA.................................................................................................	20	1	15.00	0.00	5.00	5.00	5.00
......................................................GTGCATTGTAGCCGCATTGT.................................................................................................	20	1	15.00	0.00	1.00	12.00	2.00
......................................................GTGCATTGTCGTCGCATTGTC................................................................................................	21	1	15.00	0.00	1.00	4.00	10.00
.........................................................CATTGTAGTCGCATTGTCT...............................................................................................	19	1	15.00	0.00	0.00	1.00	14.00
......................................................GTGCATTGTAGTCGCATTGTCTC..............................................................................................	23	1	15.00	0.00	0.00	1.00	14.00
......................................................GTGCATTGTAGTCxCATTGT.................................................................................................	19	1	15.00	0.00	0.00	13.00	2.00
......................................................GTGCATTGTTGTCGCATTGTC................................................................................................	21	1	14.00	0.00	1.00	3.00	10.00
......................................................GTGCATTGTAGTCxCATTG..................................................................................................	18	1	14.00	0.00	0.00	2.00	12.00

droVir3

AAG--CCCA---AAATCCGACAT-----------CT-CTGGAGCTGTTACGGAGGTGCATTGTAGTCGCATTGTCTGT-------------------CTCAAAT-TTGC-CCGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACACG-CAACG-TCGGAAGTTA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	90223.00	2330.00	7016.00	258.00	21527.00	59092.00
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	4936.00	1261.00	2900.00	60.00	205.00	510.00
......................................................GTGCATTGTAGTCGCATTGTCC...............................................................................................	22	1	1995.00	170.00	319.00	10.00	617.00	879.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	1479.00	71.00	253.00	12.00	393.00	750.00
....................................................................................................................CAATACAACTGCAGTGCAAGCT.................................	22	1	1149.00	712.00	242.00	18.00	54.00	123.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	783.00	42.00	342.00	7.00	98.00	294.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	663.00	11.00	30.00	3.00	114.00	505.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	602.00	27.00	82.00	72.00	126.00	295.00
......................................................GTGCATTGTAGTCGCATTGAC................................................................................................	21	1	562.00	0.00	4.00	1.00	102.00	455.00
....................................................................................................................CAATACAACTGCAGTGCAAGC..................................	21	1	414.00	51.00	96.00	2.00	73.00	192.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	406.00	41.00	127.00	1.00	61.00	176.00
......................................................GTGCATTGTAGTCGCATTGCC................................................................................................	21	1	305.00	4.00	110.00	1.00	58.00	132.00
......................................................GGGCATTGTAGTCGCATTGTC................................................................................................	21	1	219.00	1.00	194.00	2.00	4.00	18.00
......................................................TTGCATTGTAGTCGCATTGTC................................................................................................	21	1	206.00	1.00	3.00	1.00	59.00	142.00
......................................................GTGCATTGTAGCCGCATTGTC................................................................................................	21	1	131.00	6.00	42.00	1.00	16.00	66.00
......................................................GCGCATTGTAGTCGCATTGTC................................................................................................	21	1	113.00	6.00	27.00	2.00	33.00	45.00
......................................................GTGCATTGTAGTCGCATTGGC................................................................................................	21	1	110.00	0.00	8.00	1.00	26.00	75.00
......................................................GTGCATTGTAGTCGCATTGTCG...............................................................................................	22	1	100.00	12.00	25.00	5.00	16.00	42.00
......................................................GTGCATTGTAGTCGCATTTTC................................................................................................	21	1	97.00	0.00	83.00	10.00	0.00	4.00
....................................................................................................................CAATACAACTGCAGTGCAAGCTT................................	23	1	96.00	40.00	13.00	0.00	8.00	35.00
......................................................GTGCATTGCAGTCGCATTGTC................................................................................................	21	1	89.00	2.00	35.00	0.00	13.00	39.00
......................................................GGGCATTGTAGTCGCATTGT.................................................................................................	20	1	84.00	0.00	83.00	1.00	0.00	0.00
......................................................GTGCATTGTAGTCGCATTGC.................................................................................................	20	1	76.00	4.00	30.00	1.00	6.00	35.00
......................................................ATGCATTGTAGTCGCATTGTC................................................................................................	21	1	72.00	3.00	4.00	1.00	17.00	47.00
......................................................GTGCATTGTAGTCGCATTGG.................................................................................................	20	1	72.00	2.00	5.00	0.00	18.00	47.00
......................................................GTGCATTGTAGTCTCATTGTC................................................................................................	21	1	69.00	2.00	7.00	2.00	33.00	25.00
....................................................................................................................CAATACAACTGCAGTGCT.....................................	18	1	66.00	0.00	0.00	0.00	0.00	66.00
......................................................GTTCATTGTAGTCGCATTGTC................................................................................................	21	1	61.00	4.00	0.00	0.00	19.00	38.00
......................................................CTGCATTGTAGTCGCATTGTC................................................................................................	21	1	61.00	1.00	5.00	0.00	18.00	37.00
....................................................................................................................CAATACAACTGCAGTGCAAGCTC................................	23	1	59.00	8.00	4.00	0.00	27.00	20.00
......................................................GTGCGTTGTAGTCGCATTGTC................................................................................................	21	1	58.00	4.00	12.00	0.00	13.00	29.00
......................................................GTGCATTGTGGTCGCATTGTC................................................................................................	21	1	58.00	0.00	12.00	0.00	21.00	25.00
......................................................GTGCACTGTAGTCGCATTGTC................................................................................................	21	1	55.00	1.00	6.00	0.00	7.00	41.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	46.00	2.00	13.00	0.00	8.00	23.00
......................................................GTGCATTGTAGTCACATTGTC................................................................................................	21	1	44.00	1.00	8.00	1.00	12.00	22.00
......................................................GTGCATTGTAGTTGCATTGTC................................................................................................	21	1	44.00	1.00	9.00	1.00	8.00	25.00
......................................................GTGCATTGTAGTCGCATTGTAA...............................................................................................	22	1	44.00	7.00	22.00	5.00	3.00	7.00
......................................................GTGCATTGTAGTCCCATTGTC................................................................................................	21	1	42.00	3.00	15.00	0.00	9.00	15.00
......................................................GTGCATTGTAGTCGCCTTGTC................................................................................................	21	1	40.00	0.00	34.00	0.00	1.00	5.00
......................................................GAGCATTGTAGTCGCATTGTC................................................................................................	21	1	40.00	0.00	37.00	0.00	0.00	3.00
......................................................GTGCATTGTAGTAGCATTGTC................................................................................................	21	1	39.00	3.00	18.00	0.00	6.00	12.00
......................................................GTGCATTTTAGTCGCATTGTC................................................................................................	21	1	39.00	1.00	7.00	1.00	7.00	23.00
......................................................GTACATTGTAGTCGCATTGTC................................................................................................	21	1	39.00	0.00	3.00	1.00	12.00	23.00
......................................................GTGCATTGTAGTCGAATTGTC................................................................................................	21	1	39.00	0.00	19.00	0.00	3.00	17.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	38.00	1.00	3.00	0.00	8.00	26.00
......................................................GTGCATTGTAGTCGCATTATC................................................................................................	21	1	35.00	2.00	7.00	0.00	6.00	20.00
......................................................GTGCATTGTAGGCGCATTGTC................................................................................................	21	1	34.00	2.00	19.00	0.00	6.00	7.00
......................................................GTGCATTGTAGACGCATTGTC................................................................................................	21	1	33.00	2.00	11.00	1.00	8.00	11.00
.......................................................TGCATTGTAGTCGCATTGTC................................................................................................	20	1	32.00	2.00	2.00	0.00	7.00	21.00
......................................................GTGCATTGTAGTCGCATCGTC................................................................................................	21	1	32.00	5.00	10.00	0.00	6.00	11.00
......................................................GTGCATTGTAGTCGCACTGTC................................................................................................	21	1	31.00	1.00	7.00	0.00	7.00	16.00
.........................................................CATTGTAGTCGCATTGTC................................................................................................	18	1	31.00	1.00	0.00	0.00	5.00	25.00
....................................................................................................................CAATACAACTGCAGTGCAAG...................................	20	1	31.00	10.00	11.00	1.00	4.00	5.00
......................................................GGGCATTGTAGTCGCATTGCC................................................................................................	21	1	30.00	0.00	29.00	0.00	1.00	0.00
......................................................GTGCATTGTAGTCGCATTGTTC...............................................................................................	22	1	27.00	0.00	4.00	0.00	6.00	17.00
........................................................GCATTGTAGTCGCATTGTC................................................................................................	19	1	27.00	1.00	2.00	0.00	13.00	11.00
....................................................................................................................CAATACAACTGCAGTGCTT....................................	19	1	26.00	0.00	2.00	0.00	1.00	23.00
......................................................GTGCATTGGAGTCGCATTGTC................................................................................................	21	1	26.00	0.00	9.00	0.00	5.00	12.00
.....................................................CGTGCATTGTAGTCGCATTGTC................................................................................................	22	1	26.00	2.00	12.00	0.00	4.00	8.00
......................................................GTGCATTGTAGTCGCATTTT.................................................................................................	20	1	25.00	0.00	21.00	4.00	0.00	0.00
......................................................GTGCATTGTAGTCGCATTGTCAA..............................................................................................	23	1	25.00	2.00	3.00	18.00	2.00	0.00
......................................................GTGCATTGTAGTCGCATTCTC................................................................................................	21	1	24.00	2.00	18.00	1.00	1.00	2.00
......................................................GTGCATTGTAGTCGCATTGTG................................................................................................	21	1	24.00	0.00	7.00	1.00	2.00	14.00
......................................................GTGCATTGTAGTCGCGTTGTC................................................................................................	21	1	24.00	0.00	7.00	0.00	3.00	14.00
......................................................GTGCATTGTAGTCGCATTGA.................................................................................................	20	1	23.00	5.00	12.00	0.00	2.00	4.00
......................................................GTGCATTATAGTCGCATTGTC................................................................................................	21	1	23.00	4.00	3.00	0.00	5.00	11.00
......................................................GTGCATTGTAGTCGTATTGTC................................................................................................	21	1	22.00	3.00	2.00	0.00	4.00	13.00
....................................................................................................................CAATACAACTGCAGTGCAAGCC.................................	22	1	22.00	3.00	0.00	0.00	2.00	17.00
......................................................GTGCATTGTAGTCGCATTGTCCC..............................................................................................	23	1	22.00	3.00	0.00	0.00	8.00	11.00
......................................................GTGCATTGCAGTCGCATTGT.................................................................................................	20	1	21.00	1.00	19.00	0.00	0.00	1.00
......................................................GTCCATTGTAGTCGCATTGTC................................................................................................	21	1	20.00	0.00	2.00	1.00	6.00	11.00
......................................................GAGCATTGTAGTCGCATTGT.................................................................................................	20	1	20.00	0.00	20.00	0.00	0.00	0.00
......................................................GTGCATTGTAGTCGCTTTGTC................................................................................................	21	1	19.00	2.00	16.00	0.00	1.00	0.00
......................................................GTGCATTGTAGTCGCATGG..................................................................................................	19	1	19.00	0.00	1.00	0.00	4.00	14.00
....................................................................................................................CAATACAACTGCAGTGCA.....................................	18	1	19.00	0.00	1.00	0.00	3.00	15.00
......................................................GTGCATTGTCGTCGCATTGTC................................................................................................	21	1	18.00	0.00	5.00	0.00	1.00	12.00
......................................................GTGCATTGTAGCCGCATTGT.................................................................................................	20	1	18.00	1.00	16.00	0.00	1.00	0.00
......................................................GCGCATTGTAGTCGCATTGT.................................................................................................	20	1	18.00	3.00	14.00	0.00	1.00	0.00
......................................................GTGCATTGAAGTCGCATTGTC................................................................................................	21	1	18.00	1.00	9.00	0.00	2.00	6.00
......................................................GTGCATTGTAGTxxCATTGTC................................................................................................	19	1	17.00	4.00	0.00	0.00	7.00	6.00
......................................................GTGAATTGTAGTCGCATTGTC................................................................................................	21	1	17.00	1.00	15.00	0.00	0.00	1.00
.......................................................GTCATTGTAGTCGCATTGTC................................................................................................	20	1	17.00	2.00	0.00	0.00	7.00	8.00
......................................................GTGCATTGTAGTCGCCTTGT.................................................................................................	20	1	17.00	2.00	15.00	0.00	0.00	0.00
......................................................GTGCATTGCAGTCGCATTGCC................................................................................................	21	1	16.00	0.00	16.00	0.00	0.00	0.00
......................................................GTGTATTGTAGTCGCATTGTC................................................................................................	21	1	15.00	1.00	3.00	0.00	2.00	9.00
......................................................GTGCATTGTATTCGCATTGTC................................................................................................	21	1	15.00	0.00	6.00	1.00	0.00	8.00
......................................................GTGCATTGTAATCGCATTGTC................................................................................................	21	1	15.00	3.00	2.00	0.00	3.00	7.00
......................................................GTGCATTGTAGTCGCATTGTCCT..............................................................................................	23	1	15.00	1.00	2.00	0.00	3.00	9.00
......................................................GGGCATTGTAGTCGCATTG..................................................................................................	19	1	15.00	0.00	15.00	0.00	0.00	0.00
......................................................GTGCATTGTACTCGCATTGTC................................................................................................	21	1	14.00	2.00	2.00	0.00	1.00	9.00
......................................................GTGCCTTGTAGTCGCATTGTC................................................................................................	21	1	14.00	2.00	10.00	0.00	0.00	2.00
......................................................GTGCGTTGTAGTCGCATTGT.................................................................................................	20	1	13.00	3.00	9.00	0.00	0.00	1.00
......................................................GTGCATTGTAGTGGCATTGTC................................................................................................	21	1	13.00	0.00	4.00	0.00	1.00	8.00
......................................................GTGCATTGTAGTCxCATTGTC................................................................................................	20	1	12.00	0.00	0.00	0.00	6.00	6.00
......................................................GTGCATTGTAGGCGCATTGT.................................................................................................	20	1	12.00	1.00	11.00	0.00	0.00	0.00
......................................................GTGCATTGTAGTCGCATTGTCTT..............................................................................................	23	1	12.00	2.00	4.00	0.00	3.00	3.00
....................................................................................................................CAATACAACTGCAGTGCAT....................................	19	1	12.00	0.00	7.00	0.00	0.00	5.00
......................................................GTGCATTGTAGTCGAATTGT.................................................................................................	20	1	11.00	4.00	7.00	0.00	0.00	0.00
......................................................GTTCATTGTAGTCGCATTGTCT...............................................................................................	22	1	11.00	0.00	0.00	0.00	3.00	8.00
......................................................GGGCATTGTAGTCGCATTGTCC...............................................................................................	22	1	11.00	1.00	10.00	0.00	0.00	0.00
......................................................GGGCATTGTAGTCGCATTGTT................................................................................................	21	1	11.00	0.00	11.00	0.00	0.00	0.00

droMoj3

ATG--CAGC----ATTCCGACAT-----------CT-TTGGAGCTGTGACGGAGGTGCATTGTAGTCGCATTGTCTGT-------------------ATCCTTTATTCT-CTGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACTCG-CAACG-TCG---GACA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	34070.00	9165.00	14008.00	10454.00	443.00
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	21172.00	7175.00	8002.00	5937.00	58.00
....................................................................................................................CAATACAACTGCAGTGCAAGCT.................................	22	1	5006.00	2416.00	1467.00	1064.00	59.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	1325.00	346.00	562.00	395.00	22.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	1028.00	229.00	426.00	353.00	20.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	701.00	213.00	289.00	197.00	2.00
......................................................GTGCATTGTAGTCGCATTGTCC...............................................................................................	22	1	482.00	158.00	166.00	152.00	6.00
......................................................GTGCATTGTAGTCGCATTTTC................................................................................................	21	1	430.00	5.00	130.00	293.00	2.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	408.00	90.00	98.00	77.00	143.00
......................................................GTGCATTGTAGTCGCCTTGTC................................................................................................	21	1	316.00	0.00	73.00	236.00	7.00
....................................................................................................................CAATACAACTGCAGTGCAAGC..................................	21	1	310.00	59.00	134.00	102.00	15.00
......................................................GGGCATTGTAGTCGCATTGTC................................................................................................	21	1	304.00	4.00	205.00	93.00	2.00
......................................................GTGCATTGTAGTCGCCTTGT.................................................................................................	20	1	204.00	7.00	44.00	153.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAAGCTT................................	23	1	180.00	76.00	63.00	41.00	0.00
......................................................GGGCATTGTAGTCGCATTGT.................................................................................................	20	1	168.00	11.00	105.00	52.00	0.00
......................................................GTGCATTGTAGTCGCATTTT.................................................................................................	20	1	167.00	5.00	54.00	108.00	0.00
......................................................GTGCATTGTAGTCGCATTGTCG...............................................................................................	22	1	146.00	26.00	75.00	45.00	0.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	130.00	15.00	54.00	61.00	0.00
....................................................................................................................CAATGCAACTGCAGTGCAAGCT.................................	22	1	122.00	7.00	59.00	56.00	0.00
......................................................GCGCATTGTAGTCGCATTGTC................................................................................................	21	1	118.00	11.00	73.00	32.00	2.00
......................................................GTGCATTGTAGTCGCATTGCC................................................................................................	21	1	109.00	9.00	71.00	26.00	3.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	101.00	26.00	27.00	26.00	22.00
......................................................GAGCATTGTAGTCGCATTGTC................................................................................................	21	1	98.00	2.00	82.00	14.00	0.00
......................................................GTGCATTGTAGCCGCATTGTC................................................................................................	21	1	97.00	7.00	62.00	26.00	2.00
......................................................GCGCATTGTAGTCGCATTGT.................................................................................................	20	1	89.00	13.00	46.00	30.00	0.00
......................................................GTGCATTGTAGTCGCATTGC.................................................................................................	20	1	69.00	9.00	41.00	19.00	0.00
......................................................GTGCATTGTAGTCTCATTGTC................................................................................................	21	1	66.00	11.00	22.00	32.00	1.00
......................................................GTGCATTGTAGGCGCATTGTC................................................................................................	21	1	63.00	2.00	40.00	21.00	0.00
......................................................GTGCCTTGTAGTCGCATTGTC................................................................................................	21	1	62.00	0.00	34.00	28.00	0.00
......................................................GTGCATTGTCGTCGCATTGTC................................................................................................	21	1	61.00	1.00	26.00	32.00	2.00
......................................................GAGCATTGTAGTCGCATTGT.................................................................................................	20	1	61.00	1.00	51.00	9.00	0.00
......................................................GTGCATTGTAGTCACATTGTC................................................................................................	21	1	60.00	4.00	26.00	30.00	0.00
......................................................GTGCATTGTAGCCGCATTGT.................................................................................................	20	1	54.00	4.00	35.00	15.00	0.00
......................................................GTGCATTGTAGTCCCATTGTC................................................................................................	21	1	53.00	2.00	33.00	18.00	0.00
......................................................GTGCATTGTAGTCGCATTGTCAA..............................................................................................	23	1	50.00	8.00	6.00	4.00	32.00
......................................................GTGCGTTGTAGTCGCATTGTC................................................................................................	21	1	49.00	3.00	28.00	18.00	0.00
......................................................GTGCCTTGTAGTCGCATTGT.................................................................................................	20	1	48.00	0.00	28.00	20.00	0.00
....................................................................................................................CAATACAACTGCAGTGCCAGCT.................................	22	1	47.00	0.00	8.00	37.00	2.00
......................................................GTGCATTGTAGTAGCATTGTC................................................................................................	21	1	47.00	5.00	25.00	16.00	1.00
......................................................GTGCATTGTAGTCGAATTGTC................................................................................................	21	1	47.00	5.00	29.00	12.00	1.00
......................................................GTGCATTGGAGTCGCATTGTC................................................................................................	21	1	47.00	2.00	30.00	15.00	0.00
......................................................GTGCATTGCAGTCGCATTGTC................................................................................................	21	1	45.00	8.00	26.00	11.00	0.00
......................................................GTGCATTGTAGTCGCATTCTC................................................................................................	21	1	45.00	2.00	30.00	12.00	1.00
......................................................GTGCATTGTATTCGCATTGTC................................................................................................	21	1	45.00	8.00	13.00	24.00	0.00
.....................................................CGTGCATTGTAGTCGCATTGTC................................................................................................	22	1	44.00	2.00	29.00	13.00	0.00
......................................................GTGCATTGTGGTCGCATTGTC................................................................................................	21	1	43.00	1.00	25.00	17.00	0.00
......................................................GTGCATTGTAGTTGCATTGTC................................................................................................	21	1	42.00	8.00	16.00	18.00	0.00
......................................................GTGCATTGTAGTCGCACTGTC................................................................................................	21	1	41.00	6.00	21.00	14.00	0.00
......................................................GTGCATTGTAGTCGCATTGTAA...............................................................................................	22	1	40.00	7.00	19.00	9.00	5.00
......................................................GTGCATTGTAGTCTCATTGT.................................................................................................	20	1	40.00	11.00	15.00	14.00	0.00
......................................................GTGCATTGCAGTCGCATTGT.................................................................................................	20	1	40.00	7.00	24.00	9.00	0.00
......................................................ATGCATTGTAGTCGCATTGTC................................................................................................	21	1	39.00	3.00	12.00	24.00	0.00
......................................................GTGCATTGTAGTCGCATTATC................................................................................................	21	1	39.00	5.00	13.00	21.00	0.00
.....................................................................................................................AATACAACTGCAGTGCAAGCT.................................	21	1	38.00	21.00	8.00	9.00	0.00
......................................................GTGCATTGTAGTCGCGTTGTC................................................................................................	21	1	37.00	7.00	22.00	8.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAAG...................................	20	1	37.00	17.00	13.00	6.00	1.00
......................................................GTACATTGTAGTCGCATTGTC................................................................................................	21	1	36.00	1.00	23.00	12.00	0.00
......................................................GTGCATTGTAGTCGCTTTGTC................................................................................................	21	1	34.00	7.00	23.00	2.00	2.00
......................................................GTGCATTGTAGGCGCATTGT.................................................................................................	20	1	33.00	3.00	19.00	10.00	1.00
......................................................GTGCATTGTAGTCGCATTGGC................................................................................................	21	1	33.00	2.00	20.00	10.00	1.00
......................................................GTGCATTGTACTCGCATTGTC................................................................................................	21	1	32.00	9.00	14.00	9.00	0.00
......................................................GTGCATTGTAGTCGAATTGT.................................................................................................	20	1	32.00	2.00	18.00	12.00	0.00
......................................................GTGAATTGTAGTCGCATTGTC................................................................................................	21	1	31.00	5.00	15.00	11.00	0.00
......................................................GTGCATTGTAGTCGCATTGA.................................................................................................	20	1	30.00	6.00	13.00	8.00	3.00
......................................................TTGCATTGTAGTCGCATTGTC................................................................................................	21	1	30.00	13.00	11.00	6.00	0.00
......................................................GTGCATTGTAGTCGCATCGTC................................................................................................	21	1	30.00	5.00	14.00	11.00	0.00
......................................................GTGCATTGTAGTCGCTTTGT.................................................................................................	20	1	29.00	13.00	13.00	3.00	0.00
......................................................GTGCATTGTAGTCGCATTGTCTC..............................................................................................	23	1	29.00	5.00	14.00	10.00	0.00
......................................................GGGCATTGTAGTCGCCTTGTC................................................................................................	21	1	28.00	0.00	15.00	13.00	0.00
......................................................GTGCATTGTAGTTGCATTGT.................................................................................................	20	1	28.00	4.00	14.00	10.00	0.00
......................................................GTGCATTGTAGTAGCATTGT.................................................................................................	20	1	27.00	6.00	14.00	7.00	0.00
......................................................GTGCATTGTAGACGCATTGTC................................................................................................	21	1	27.00	3.00	13.00	11.00	0.00
......................................................GTGCACTGTAGTCGCATTGTC................................................................................................	21	1	27.00	1.00	11.00	15.00	0.00
......................................................GTGCATTGTAGTCACATTGT.................................................................................................	20	1	27.00	5.00	10.00	12.00	0.00
......................................................GTGCGTTGTAGTCGCATTGT.................................................................................................	20	1	27.00	3.00	15.00	9.00	0.00
......................................................GTTCATTGTAGTCGCATTGTC................................................................................................	21	1	26.00	19.00	5.00	2.00	0.00
......................................................GTGCATTGTAGTCGCATTT..................................................................................................	19	1	25.00	3.00	7.00	15.00	0.00
......................................................GTGCATTGTAGTCGCATGGTC................................................................................................	21	1	25.00	0.00	16.00	9.00	0.00
......................................................GTGCATTGGAGTCGCATTGT.................................................................................................	20	1	25.00	2.00	16.00	7.00	0.00
......................................................GTGTATTGTAGTCGCATTGTC................................................................................................	21	1	25.00	10.00	12.00	3.00	0.00
......................................................GTGCATTGTAGTCGCATTGTTT...............................................................................................	22	1	24.00	6.00	9.00	9.00	0.00
......................................................GTGCATTGTAGTCGCATCGT.................................................................................................	20	1	24.00	6.00	8.00	10.00	0.00
......................................................GTGCAGTGTAGTCGCATTGTC................................................................................................	21	1	24.00	0.00	13.00	11.00	0.00
......................................................GTCCATTGTAGTCGCATTGTC................................................................................................	21	1	23.00	11.00	8.00	4.00	0.00
......................................................GTGCATTGTATTCGCATTGT.................................................................................................	20	1	23.00	6.00	5.00	12.00	0.00
......................................................GTGCATTGTAGTCCCATTGT.................................................................................................	20	1	23.00	3.00	14.00	6.00	0.00
....................................................................................................................CAATACAACTGCAGTGCAAGCTC................................	23	1	23.00	6.00	8.00	8.00	1.00
........................................................GCATTGTAGTCGCATTGTC................................................................................................	19	1	22.00	15.00	5.00	2.00	0.00
......................................................GTGCATTGTAGTCGCGTTGT.................................................................................................	20	1	22.00	2.00	10.00	10.00	0.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	22.00	1.00	10.00	11.00	0.00
......................................................GTGCATTGTAGTCGTATTGTC................................................................................................	21	1	21.00	10.00	5.00	6.00	0.00
......................................................GTGCATTGTAGTCGTATTGT.................................................................................................	20	1	21.00	11.00	7.00	3.00	0.00
......................................................ATGCATTGTAGTCGCATTGT.................................................................................................	20	1	21.00	1.00	8.00	12.00	0.00
......................................................GGGCATTGTAGTCGCATTGTT................................................................................................	21	1	21.00	0.00	10.00	11.00	0.00
......................................................GGGCAGTGTAGTCGCATTGTC................................................................................................	21	1	21.00	0.00	12.00	9.00	0.00
......................................................CTGCATTGTAGTCGCATTGTC................................................................................................	21	1	21.00	3.00	9.00	9.00	0.00
......................................................GGGCAGTGTAGTCGCATTGT.................................................................................................	20	1	20.00	0.00	8.00	12.00	0.00
......................................................GTGCATTGTAGTCGCATTGG.................................................................................................	20	1	19.00	1.00	10.00	8.00	0.00
......................................................GTGCATTGTAGTCGCATTCT.................................................................................................	20	1	19.00	1.00	13.00	5.00	0.00
......................................................GGGCATTGTAGTCACATTGTC................................................................................................	21	1	19.00	0.00	7.00	12.00	0.00
....................................................................................................................TAATACAACTGCAGTGCAAGCT.................................	22	1	19.00	1.00	11.00	7.00	0.00

droGri2

CTCTGCACAGTTAGGGCAGACAT-----------CTCCAGGAGCTGTCACGAAGGTGCATTGTAGTCGCATTGTCTGT-------------------CCAAAAA-TTGC-ATGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACTAG-CAACAACTCTTTGATC	Size	Hit Count	Total Norm	V109 Male body
......................................................GTGCATTGTAGTCGCATTGT.................................................................................................	20	1	157.00	157.00
......................................................GTGCATTGTAGTCGCATTGTC................................................................................................	21	1	151.00	151.00
....................................................................................................................CAATACAACTGCAGTGCAAGCT.................................	22	1	126.00	126.00
......................................................GTGCATTGTAGTCGCATTGTCT...............................................................................................	22	1	8.00	8.00
......................................................GTGCATTGTAGTCGCATTGTT................................................................................................	21	1	5.00	5.00
......................................................GTGCATTGTAGTCGCATTG..................................................................................................	19	1	4.00	4.00
....................................................................................................................CAATACAACTGCAGTGCAAGCTT................................	23	1	4.00	4.00
......................................................GTGCATTGTAGTCGCATTGTA................................................................................................	21	1	2.00	2.00
......................................................GTGCATCGTAGTCGCATTGTC................................................................................................	21	1	2.00	2.00
......................................................GTGCACTGTAGTCGCATTGT.................................................................................................	20	1	2.00	2.00
......................................................GTGCATTGTAGTCGCATGGTC................................................................................................	21	1	2.00	2.00
......................................................GTGCATTGTAGTCGCATTGTCA...............................................................................................	22	1	2.00	2.00
......................................................GTGCATTGGAGTCGCATTGTC................................................................................................	21	1	1.00	1.00
....................................................................................................................CAATACAACTGCAGTGCAAGC..................................	21	1	1.00	1.00
....................................................................................................................CAGTACAACTGCAGTGCAAGCT.................................	22	1	1.00	1.00
....................................................................................................................CAATACAACTGCAGTGCGAGCT.................................	22	1	1.00	1.00
........................................................GCATTGTAGTCGCATTGTC................................................................................................	19	1	1.00	1.00
....................................................................................................................CAATACAACTACAGTGCAAGCT.................................	22	1	1.00	1.00
....................................................................................................................CAATATAACTGCAGTGCAAGCT.................................	22	1	1.00	1.00
......................................................GTCCATTGTAGTCGCATAGT.................................................................................................	20	1	1.00	1.00
....................................................................................................................CAATACAACTGCAGTGCCAGCT.................................	22	1	1.00	1.00
......................................................GTGCATTGTAGTCGCATAGTC................................................................................................	21	1	1.00	1.00
......................................................GTGCAATGTAGTCGCATTGTC................................................................................................	21	1	1.00	1.00
......................................................GTGCATTGTAGTCGCATCGT.................................................................................................	20	1	1.00	1.00
......................................................GTGCATTGTAGTCGCATTCT.................................................................................................	20	1	1.00	1.00
....................................................................................................................CAATACCACTGCAGTGCAAGCT.................................	22	1	1.00	1.00
......................................................GTGCATTGGAGTCGCATTGT.................................................................................................	20	1	1.00	1.00
...........................................................................TGT-------------------CCAAAAA-TTGC-ATGCGGT......................................................	21	1	1.00	1.00
......................................................GTGCATTGTAGTCGCATT...................................................................................................	18	1	1.00	1.00
....................................................................................................................CAATACAACTGCAGTGCTAGCT.................................	22	1	1.00	1.00
....................................................................................................................CAATACAACTTCAGTGCAAGCT.................................	22	1	1.00	1.00
...........................................................................TGT-------------------CCAAAAA-TTGC-ATGCGG.......................................................	20	1	1.00	1.00
......................................................GTGCATGGTAGTCGCATTGTC................................................................................................	21	1	1.00	1.00
....................................................................................................................CAATACAACTGCAGTGCAAG...................................	20	1	1.00	1.00
......................................................GCGCATTGTAGTTGCATTGTC................................................................................................	21	1	1.00	1.00
......................................................GTGCATTGTAGTCGCATTTT.................................................................................................	20	1	1.00	1.00
....................................................................................................................CAATAGAACTGCAGTGCAAGCT.................................	22	1	1.00	1.00
....................................................AGGTGCATTGTAGTCGCATTGT.................................................................................................	22	1	1.00	1.00
......................................................GTGCATTGAAGTCGCATTG..................................................................................................	19	1	1.00	1.00
......................................................GTGCATTGCAGTCGCATTGT.................................................................................................	20	1	1.00	1.00
......................................................GTACATTGTAGTCGCATTGTC................................................................................................	21	1	1.00	1.00
....................................................................................................................CAATCCAACTGCAGTGCAAGCT.................................	22	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image