dme-mir-316- Best orthologs

dme-mir-316	chr3L:21661814-21661902 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 21661866-21661887
   star strand at position 21661828-21661849
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:21661799-21661917 -		1	GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTCAGCGATT------------------------------------------------TGCA
droSim1	chr3L:21004826-21004944 -	LASTZ	1	GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACT------------------------------------------------TGCA
droSec1	super_11:1581867-1581985 -	LASTZ	1	GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACT------------------------------------------------TGCA
droYak2	chr3L:18849495-18849613 +	LASTZ	1	GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGACCAGCGATT------------------------------------------------TGCA
droEre2	scaffold_4784:21318808-21318933 -	LASTZ	1	GA------------AA--------------------------TACACAAAGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTCACTATGAGTTTGGCCAGCGACT------------------------------------------------TGCA
droEug1	scf7180000409472:489571-489707 -	LASTZ	4	GT-CGATCAGGCTATA----------------------------T-C--AGTGTACTATATATCT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTAAGAGTTTTGCCAACGATT------------------------------------------------CGCA
droBia1	scf7180000302377:1644754-1644883 +	LASTZ	4	GT-CGAGCAGGCCAGA---------------------------------AGTGT-----ATACGT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTACACAACGACAGGAAAGGGAAAAAGGCGTATTTACTACGAGTTTGACCAACGATT------------------------------------------------TGCA
droTak1	scf7180000411025:47424-47545 +	LASTZ	4	GC-C--------TAAA---------------------------------AGTGT-----ACACAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATATTAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGCCAACAATT------------------------------------------------TCCA
droEle1	scf7180000491199:1233814-1233943 +	LASTZ	4	GT-CCGACGGACTAAA---------------------------------AGTGT-----ATACAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAAAAACGACAGGAAAGGGAAAAAGGCGTATTTACTAAGAGTTTGACCAGCAATT------------------------------------------------TGCA
droRho1	scf7180000780271:105025-105153 +	LASTZ	4	GT-CGAATAAACTAAA---------------------------------AGTGT-----ATATAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGCCAACAAT-------------------------------------------------TGCA
droFic1	scf7180000453831:502029-502163 -	LASTZ	4	GT-CGGATAGACTAAA---------------------------------AGTTA-----ATGCAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGAAGTTTTATTTGAACAACGTCAGGAAAGGGAAAAAGGCGTATTTACTAAGAGTTTGGCCATCAGTT-----T---CA--CC---------------------------------TTCA
droKik1	scf7180000302272:829434-829557 +	LASTZ	4	AT------------AC---------------------------------AGTGTAACGTCTATAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGCCATCAAGC------------------------------------------------TATC
droAna3	scaffold_13337:3985740-3985858 -	LASTZ	1	CA------------AG---------------------------------AACAT-----ATATTC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGTCAACATTT------------------------------------------------CGTC
droBip1	scf7180000395450:119505-119589 -	LASTZ	4	CA------------AA-----------------------GA-T-------ATAC-----ATATTC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAA------------------------------------------------------------------------------------
dp4	chrXR_group6:4548558-4548677 +	LASTZ	1	GT------------AA-----------------------AA-TATACAAA----------GATCA-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAA---------------------------------------------------ACA
droPer1	super_9:2845596-2845715 +	LASTZ	1	GT------------AA-----------------------AA-TATACAAA----------GATCA-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAA---------------------------------------------------ACA
droWil1	scaffold_180698:1092691-1092806 +	LASTZ	1	AT------------AT---------------------------------AATGT-----ATGTAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAACTAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTAATCAACAAAT------------------------------------------------T---
droVir3	scaffold_13049:24266823-24266971 +	LASTZ	1	AT------------AT---------------------------------CTTTG-----ATCTATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATTTGTTCAACCAATCTGTTTAAACA--CC--------------TATTCA--ATGAAAAGAAATGCT
droMoj3	scaffold_6680:18891183-18891347 +	LASTZ	1	GATCTAACTGAATCGA---------------------------------TTTTT-----AT--ATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGACGTTTTATT-GAACAACGGCAGGGAAGGGAAAAAGGCGTATTTACTATGAATTATTTCAACGATA-----T---AAAAATTTCTATTAAAATAATAATCAGAGTGAGAGA----GGG
droGri2	scaffold_15110:9482044-9482193 -	LASTZ	1	TA-CCAG-AGACTAAACATTTTGTGTATAAGTATTGTATGATTAAGCAAT-----------CTTCAGAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATGTAATCAACAA------------------------------------------------------

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTCAGCGATT------------------------------------------------TGCA
droSim1	GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACT------------------------------------------------TGCA
droSec1	GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACT------------------------------------------------TGCA
droYak2	GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGACCAGCGATT------------------------------------------------TGCA
droEre2	GA------------AA--------------------------TACACAAAGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTCACTATGAGTTTGGCCAGCGACT------------------------------------------------TGCA
droEug1	GT-CGATCAGGCTATA----------------------------T-C--AGTGTACTATATATCT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTAAGAGTTTTGCCAACGATT------------------------------------------------CGCA
droBia1	GT-CGAGCAGGCCAGA---------------------------------AGTGT-----ATACGT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTACACAACGACAGGAAAGGGAAAAAGGCGTATTTACTACGAGTTTGACCAACGATT------------------------------------------------TGCA
droTak1	GC-C--------TAAA---------------------------------AGTGT-----ACACAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATATTAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGCCAACAATT------------------------------------------------TCCA
droEle1	GT-CCGACGGACTAAA---------------------------------AGTGT-----ATACAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAAAAACGACAGGAAAGGGAAAAAGGCGTATTTACTAAGAGTTTGACCAGCAATT------------------------------------------------TGCA
droRho1	GT-CGAATAAACTAAA---------------------------------AGTGT-----ATATAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGCCAACAAT-------------------------------------------------TGCA
droFic1	GT-CGGATAGACTAAA---------------------------------AGTTA-----ATGCAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGAAGTTTTATTTGAACAACGTCAGGAAAGGGAAAAAGGCGTATTTACTAAGAGTTTGGCCATCAGTT-----T---CA--CC---------------------------------TTCA
droKik1	AT------------AC---------------------------------AGTGTAACGTCTATAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGCCATCAAGC------------------------------------------------TATC
droAna3	CA------------AG---------------------------------AACAT-----ATATTC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGTCAACATTT------------------------------------------------CGTC
droBip1	CA------------AA-----------------------GA-T-------ATAC-----ATATTC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAA------------------------------------------------------------------------------------
dp4	GT------------AA-----------------------AA-TATACAAA----------GATCA-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAA---------------------------------------------------ACA
droPer1	GT------------AA-----------------------AA-TATACAAA----------GATCA-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAA---------------------------------------------------ACA
droWil1	AT------------AT---------------------------------AATGT-----ATGTAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAACTAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTAATCAACAAAT------------------------------------------------T---
droVir3	AT------------AT---------------------------------CTTTG-----ATCTATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATTTGTTCAACCAATCTGTTTAAACA--CC--------------TATTCA--ATGAAAAGAAATGCT
droMoj3	GATCTAACTGAATCGA---------------------------------TTTTT-----AT--ATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGACGTTTTATT-GAACAACGGCAGGGAAGGGAAAAAGGCGTATTTACTATGAATTATTTCAACGATA-----T---AAAAATTTCTATTAAAATAATAATCAGAGTGAGAGA----GGG
droGri2	TA-CCAG-AGACTAAACATTTTGTGTATAAGTATTGTATGATTAAGCAAT-----------CTTCAGAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATGTAATCAACAA------------------------------------------------------

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACT------------------------------------------------TGCA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.................................................................................TGTCTTTTTCCGCTTACTG......................................................................................................................	19	1	9427.00	0.00	6654.00	2619.00	154.00
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5108.00	2443.00	467.00	717.00	1481.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	3802.00	98.00	2087.00	1271.00	346.00
.................................................................................TGTCTTTTTCCGCTTACTGG.....................................................................................................................	20	1	715.00	4.00	286.00	276.00	149.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	325.00	299.00	4.00	6.00	16.00
.................................................................................TGTCTTTTTCCGCTTACTGGCT...................................................................................................................	22	1	206.00	8.00	113.00	73.00	12.00
.................................................................................TGTCTTTTTCCGCTTACTGAC....................................................................................................................	21	1	166.00	0.00	114.00	44.00	8.00
.................................................................................TGTCTTTTTCCGCTTACGG......................................................................................................................	19	1	97.00	0.00	59.00	33.00	5.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTA.............................................................................	22	1	32.00	21.00	0.00	1.00	10.00
.................................................................................TGTCTTTTTCCGCTTACTTGCG...................................................................................................................	22	1	30.00	29.00	0.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCTG..................................................................................................................	23	1	26.00	0.00	16.00	9.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTT.................................................................................................................	24	1	24.00	23.00	0.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGA.....................................................................................................................	20	1	23.00	0.00	16.00	7.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGA....................................................................................................................	21	1	22.00	0.00	14.00	8.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	20.00	20.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCA...................................................................................................................	22	1	18.00	3.00	5.00	8.00	2.00
.................................................................................TGCCTTTTTCCGCTTACTG......................................................................................................................	19	1	15.00	0.00	9.00	6.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGT....................................................................................................................	21	1	12.00	1.00	6.00	5.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCC...................................................................................................................	22	1	11.00	2.00	5.00	3.00	1.00
.................................................................................TTTCTTTTTCCGCTTACTG......................................................................................................................	19	1	11.00	0.00	8.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGAG...................................................................................................................	22	1	10.00	9.00	0.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGT.....................................................................................................................	20	1	10.00	0.00	6.00	4.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	10.00	10.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACT.......................................................................................................................	18	1	10.00	0.00	4.00	6.00	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	9.00	0.00	5.00	3.00	1.00
.................................................................................TGCCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	9.00	6.00	0.00	1.00	2.00
.................................................................................TGTCTTTTTACGCTTACTGGCG...................................................................................................................	22	1	7.00	4.00	0.00	2.00	1.00
.................................................................................TGTCCTTTTCCGCTTACTGGCG...................................................................................................................	22	1	7.00	5.00	0.00	1.00	1.00
.................................................................................TGTCCTTTTCCGCTTACTG......................................................................................................................	19	1	7.00	0.00	4.00	3.00	0.00
....................................................................................CTTTTTCCGCTTACTGGCG...................................................................................................................	19	1	7.00	4.00	0.00	0.00	3.00
................................................................................TTGTCTTTTTCCGCTTACTG......................................................................................................................	20	1	7.00	0.00	4.00	3.00	0.00
.................................................................................TATCTTTTTCCGCTTACTG......................................................................................................................	19	1	7.00	0.00	6.00	1.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCG...............................................................................	20	1	6.00	1.00	0.00	1.00	4.00
.................................................................................TCTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	6.00	2.00	0.00	0.00	4.00
.................................................................................TGTCxTTTTCCGCTTACTG......................................................................................................................	18	1	6.00	0.00	4.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGG....................................................................................................................	21	1	6.00	0.00	3.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCCTACTGGCG...................................................................................................................	22	1	6.00	5.00	0.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTA......................................................................................................................	19	1	6.00	0.00	4.00	2.00	0.00
.................................................................................TTTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	6.00	1.00	0.00	0.00	5.00
...................................................................................TCTTTTTCCGCTTACTGGCG...................................................................................................................	20	1	6.00	2.00	1.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACCG......................................................................................................................	19	1	6.00	0.00	0.00	6.00	0.00
.................................................................................TGTCTTTTTCCGCCTACTG......................................................................................................................	19	1	6.00	0.00	3.00	3.00	0.00
.................................................................................TGTCTTTTTTCGCTTACTGGCG...................................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGTG...................................................................................................................	22	1	6.00	3.00	0.00	0.00	3.00
.................................................................................TGTCTTTTTCCGCTTTCTGGCG...................................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTCCTGGCG...................................................................................................................	22	1	5.00	4.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCCCTTACTGGCG...................................................................................................................	22	1	5.00	1.00	0.00	1.00	3.00
..................................................................................GTCTTTTTCCGCTTACTG......................................................................................................................	18	1	5.00	0.00	4.00	1.00	0.00
.................................................................................TGACTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	4.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCGT..................................................................................................................	23	1	4.00	2.00	0.00	2.00	0.00
.................................................................................TGTCTTTTTCCGTTTACTGGCG...................................................................................................................	22	1	4.00	2.00	1.00	0.00	1.00
.................................................................................CGTCTTTTTCCGCTTACTG......................................................................................................................	19	1	4.00	0.00	4.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTC......................................................................................................................	19	1	4.00	1.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACCGGCG...................................................................................................................	22	1	4.00	2.00	1.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGC..................................................................................................................	23	1	4.00	1.00	0.00	2.00	1.00
.................................................................................TCTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	4.00	0.00	1.00	1.00	2.00
.................................................................................TGTCTTTTTCCTCTTACTGGCG...................................................................................................................	22	1	4.00	1.00	0.00	0.00	3.00
.................................................................................TGTCTTTTCCCGCTTACTG......................................................................................................................	19	1	4.00	0.00	3.00	1.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA.............................................................................	23	1	4.00	3.00	0.00	1.00	0.00
................................................................................CTGTCTTTTTCCGCTTACTGGCG...................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
.................................................................................TGTCTCTTTCCGCTTACTG......................................................................................................................	19	1	4.00	0.00	3.00	1.00	0.00
.................................................................................TGTCTTTTTCCACTTACTG......................................................................................................................	19	1	4.00	0.00	2.00	2.00	0.00
.................................................................................TATCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	4.00	3.00	0.00	1.00	0.00
.................................................................................TGTCTTTTTCAGCTTACTGGCG...................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTGCTG......................................................................................................................	19	1	4.00	0.00	3.00	1.00	0.00
.................................................................................TGTCTTTTTCCACTTACTGGC....................................................................................................................	21	1	4.00	0.00	2.00	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTAGC....................................................................................................................	21	1	4.00	0.00	2.00	2.00	0.00
..................................................................................ATCTGTTTCCGCTTACTG......................................................................................................................	18	1	4.00	0.00	0.00	0.00	4.00
.................................................................................TGTCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGC....................................................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCxTTTTCCGCTTACTGGCG...................................................................................................................	21	1	3.00	2.00	0.00	1.00	0.00
.................................................................................TGTATTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.................................................................................CGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGA..................................................................................................................	23	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTTCGCTTACTG......................................................................................................................	19	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGACTTTTTCCTCTTACTGGCG...................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTGCTGGCG...................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.................................................................................CGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	2.00	0.00	0.00	1.00
................................................................................TTGTCTTTTTCCGCTTACTGGC....................................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTTGC....................................................................................................................	21	1	3.00	2.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCxCTTACTGGCG...................................................................................................................	21	1	3.00	0.00	1.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTACCGGC....................................................................................................................	21	1	3.00	0.00	1.00	2.00	0.00

droSec1

GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACT------------------------------------------------TGCA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	11985.00	889.00	9911.00	1185.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	3608.00	847.00	2586.00	175.00
.................................................................................TGTCTTTTTCCGCTTACTGG.....................................................................................................................	20	1	351.00	98.00	34.00	219.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGA..................................................................................................................	23	1	321.00	132.00	30.00	159.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	315.00	88.00	77.00	150.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTA.............................................................................	22	1	297.00	167.00	129.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTT.................................................................................................................	24	1	197.00	67.00	114.00	16.00
.................................................................................TGTCTTTTTCCGTTTACTGGCG...................................................................................................................	22	1	70.00	1.00	69.00	0.00
.................................................................................TGTCxTTTTCCGCTTACTGGCG...................................................................................................................	21	1	55.00	0.00	55.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGAT.................................................................................................................	24	1	51.00	36.00	1.00	14.00
.................................................................................TGTCTTTTTTCGCTTACTGGCG...................................................................................................................	22	1	50.00	0.00	50.00	0.00
.................................................................................TGTCTCTTTCCGCTTACTGGCG...................................................................................................................	22	1	49.00	1.00	46.00	2.00
.................................................................................TGTCTTTTTCTGCTTACTGGCG...................................................................................................................	22	1	47.00	1.00	42.00	4.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGAA.................................................................................................................	24	1	44.00	23.00	1.00	20.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA.............................................................................	23	1	40.00	8.00	32.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCT...................................................................................................................	22	1	39.00	22.00	2.00	15.00
.................................................................................TGTCTTTTTCCGCTTACTGGA....................................................................................................................	21	1	39.00	10.00	0.00	29.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGT..............................................................................	21	1	38.00	32.00	6.00	0.00
.................................................................................TGTCTTTTTCCGCTTATTGGCG...................................................................................................................	22	1	32.00	0.00	30.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTA.................................................................................................................	24	1	31.00	15.00	4.00	12.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGC..................................................................................................................	23	1	30.00	3.00	23.00	4.00
.................................................................................TGTCTTTTTCCGCTTACTGGCA...................................................................................................................	22	1	30.00	8.00	7.00	15.00
.................................................................................TGTCCTTTTCCGCTTACTGGCG...................................................................................................................	22	1	28.00	2.00	26.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGT....................................................................................................................	21	1	24.00	5.00	0.00	19.00
.................................................................................TGTCxTTTTCCGCTTACTGGCGT..................................................................................................................	22	1	20.00	0.00	19.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTTT................................................................................................................	25	1	19.00	8.00	7.00	4.00
.................................................................................TGTCTTTTTCCGTTTACTGGCGT..................................................................................................................	23	1	17.00	0.00	17.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGC................................................................................	19	1	16.00	4.00	12.00	0.00
.................................................................................TCTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	15.00	2.00	12.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTG......................................................................................................................	19	1	14.00	1.00	1.00	12.00
.................................................................................TGTCTTTTTCCGCTTCCTGGCG...................................................................................................................	22	1	14.00	0.00	14.00	0.00
.................................................................................TGTCTTTTTCCCCTTACTGGCG...................................................................................................................	22	1	14.00	1.00	12.00	1.00
.................................................................................CGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	14.00	0.00	13.00	1.00
.................................................................................TGTTTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	13.00	0.00	13.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGCG...................................................................................................................	22	1	13.00	1.00	10.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTAGCG...................................................................................................................	22	1	13.00	6.00	6.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTAA................................................................................................................	25	1	12.00	5.00	1.00	6.00
.................................................................................TTTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	12.00	0.00	12.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA............................................................................	23	1	12.00	11.00	1.00	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	12.00	0.00	10.00	2.00
.................................................................................TGTCCTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	11.00	1.00	10.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	11.00	1.00	10.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGAG...................................................................................................................	22	1	11.00	2.00	8.00	1.00
.................................................................................TGTCTTTTTCxxCTTACTGGCG...................................................................................................................	20	1	11.00	0.00	11.00	0.00
.................................................................................TGTCTTTTTCCGCCTACTGGCG...................................................................................................................	22	1	11.00	2.00	7.00	2.00
.................................................................................TGTCTTCTTCCGCTTACTGGCG...................................................................................................................	22	1	11.00	0.00	10.00	1.00
.................................................................................TGTCTCTTTCCGCTTACTGGCGT..................................................................................................................	23	1	10.00	1.00	9.00	0.00
.................................................................................TGTCTTTCTCCGCTTACTGGCG...................................................................................................................	22	1	10.00	0.00	9.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGTGT..................................................................................................................	23	1	10.00	0.00	10.00	0.00
.................................................................................TATCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	9.00	3.00	6.00	0.00
.................................................................................TGTCTTTTTCTGCTTACTGGCGT..................................................................................................................	23	1	9.00	1.00	8.00	0.00
.................................................................................TGTCTTTTTCCGCTTACCGGCG...................................................................................................................	22	1	9.00	0.00	8.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTAGCGT..................................................................................................................	23	1	9.00	8.00	1.00	0.00
.................................................................................TGTCTTTTTCCACTTACTGGCG...................................................................................................................	22	1	9.00	1.00	6.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTCGCG...................................................................................................................	22	1	9.00	3.00	5.00	1.00
.................................................................................TGTCTTTTTCCGCTTGCTGGCG...................................................................................................................	22	1	9.00	0.00	9.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCG...................................................................................................................	22	1	9.00	5.00	4.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	9.00	3.00	6.00	0.00
.................................................................................TGTCTTTTTCCGCTAACTGGCG...................................................................................................................	22	1	9.00	0.00	9.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCGT..................................................................................................................	23	1	8.00	7.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTCACTGGCG...................................................................................................................	22	1	8.00	1.00	7.00	0.00
.................................................................................TGTCTTTTTCAGCTTACTGGCG...................................................................................................................	22	1	8.00	1.00	6.00	1.00
.......................................................................................................................ACAGGAAGGGGAAAAAGGCGTA.............................................................................	22	1	8.00	6.00	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTATTGGCGT..................................................................................................................	23	1	8.00	0.00	8.00	0.00
.....................................................................................TTTTTCCGCTTACTGGCG...................................................................................................................	18	1	8.00	0.00	7.00	1.00
.................................................................................TGTTTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	8.00	0.00	6.00	2.00
.................................................................................TGTCTTTTCCCGCTTACTGGCG...................................................................................................................	22	1	8.00	0.00	8.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCG...............................................................................	20	1	7.00	5.00	0.00	2.00
.................................................................................TGTCTTTTTACGCTTACTGGCG...................................................................................................................	22	1	7.00	0.00	4.00	3.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGTGTA.............................................................................	22	1	7.00	1.00	6.00	0.00
.................................................................................TGTCTTTTTTCGCTTACTGGCGT..................................................................................................................	23	1	7.00	0.00	7.00	0.00
..................................................................................GTCTTTTTCCGCTTACTGGCG...................................................................................................................	21	1	7.00	0.00	6.00	1.00
................................................................................CTGTCTTTTTCCGCTTACTGGCG...................................................................................................................	23	1	7.00	0.00	6.00	1.00
.................................................................................TATCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	7.00	1.00	5.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTCGCGT..................................................................................................................	23	1	7.00	4.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGTG...................................................................................................................	22	1	7.00	1.00	5.00	1.00
...................................................................................TGTCTTTCCGCTTACTGGCG...................................................................................................................	20	1	7.00	1.00	6.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCC...................................................................................................................	22	1	6.00	0.00	6.00	0.00
.................................................................................TGTCTTTTTCCGCTTACCGGCGT..................................................................................................................	23	1	6.00	1.00	4.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTAT................................................................................................................	25	1	6.00	5.00	0.00	1.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTAT............................................................................	23	1	6.00	6.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	6.00	0.00	3.00	3.00
.................................................................................TGTATTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	0.00	4.00	1.00
.................................................................................TCTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	5.00	3.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGT.....................................................................................................................	20	1	5.00	4.00	0.00	1.00
....................................................................................CTTTTTCCGCTTACTGGCG...................................................................................................................	19	1	5.00	1.00	4.00	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	5.00	1.00	4.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTTA................................................................................................................	25	1	5.00	4.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTTCTGGCG...................................................................................................................	22	1	5.00	1.00	4.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGCCGT..................................................................................................................	23	1	4.00	0.00	3.00	1.00
.................................................................................CGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	4.00	2.00	2.00	0.00
.................................................................................TGTCTTTTTCxxCTTACTGGCGT..................................................................................................................	21	1	4.00	1.00	2.00	1.00
.................................................................................TGTCTTTTCCCGCTTACTGGCGT..................................................................................................................	23	1	4.00	1.00	3.00	0.00
...................................................................................TCTTTTTCCGCTTACTGGCG...................................................................................................................	20	1	4.00	0.00	4.00	0.00
.................................................................................TGTCTTTTACCGCTTACTGGCG...................................................................................................................	22	1	4.00	0.00	3.00	1.00
.................................................................................TGGCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	4.00	0.00	4.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTC.................................................................................................................	24	1	4.00	0.00	3.00	1.00
....................................................................................CTTTTTCCGCTTACTGGCGT..................................................................................................................	20	1	3.00	0.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGAA...................................................................................................................	22	1	3.00	1.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGGCTT..................................................................................................................	23	1	3.00	2.00	0.00	1.00

droYak2

GA------------AA---------------------------------AGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGACCAGCGATT------------------------------------------------TGCA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	2	1888.50	1206.00	193.50	124.00	262.50	102.50
.................................................................................TGTCTTTTTCCGCTTACTG......................................................................................................................	19	2	597.00	0.50	1.50	0.50	2.00	592.50
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	2	310.50	144.00	23.50	112.00	31.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	2	291.50	53.00	4.50	10.00	7.50	216.50
.................................................................................TGTCTTTTTCCGCTTACTGG.....................................................................................................................	20	2	56.50	2.50	3.00	17.50	8.50	25.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTA.............................................................................	22	2	42.50	12.00	0.00	27.00	3.50	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCG...................................................................................................................	22	2	33.50	5.00	9.50	0.50	18.50	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCG...................................................................................................................	22	2	29.00	7.00	14.50	1.00	6.50	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCT...................................................................................................................	22	2	17.50	1.00	3.50	1.50	3.50	8.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTT.................................................................................................................	24	2	14.00	5.50	1.00	6.50	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGA..................................................................................................................	23	2	9.00	2.00	1.50	1.50	3.50	0.50
.................................................................................TGTCTTTTTCCGCTTACTGAC....................................................................................................................	21	2	9.00	0.00	0.00	0.00	0.00	9.00
.................................................................................TGGCTTTTTCCGCTTACTGGCG...................................................................................................................	22	2	8.50	6.00	1.00	0.00	1.50	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGC................................................................................	19	2	6.50	0.00	0.00	6.50	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACGG......................................................................................................................	19	2	4.50	0.00	0.00	0.00	0.00	4.50
.................................................................................TGTCTTTTTCCGCTTACTGTCGT..................................................................................................................	23	2	3.50	0.50	0.50	0.50	2.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGT..............................................................................	21	2	3.50	0.00	0.00	3.50	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCA...................................................................................................................	22	2	3.50	1.00	0.00	1.00	1.00	0.50
.................................................................................TGTCTTTTTCCTCTTACTGGCG...................................................................................................................	22	2	3.50	0.50	1.00	0.50	1.50	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA.............................................................................	23	2	3.50	3.00	0.00	0.50	0.00	0.00
.................................................................................TGTCTTTTTCCGATTACTGGCG...................................................................................................................	22	2	3.50	2.50	0.00	0.50	0.50	0.00
.................................................................................TGTCTTTTTCAGCTTACTGGCG...................................................................................................................	22	2	3.50	2.50	0.50	0.00	0.50	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGAG...................................................................................................................	22	2	3.00	2.00	0.50	0.00	0.50	0.00
.................................................................................TGTCTTTTTCCGCTTACTCGCG...................................................................................................................	22	2	3.00	1.50	0.50	0.50	0.50	0.00
.................................................................................TGTCTTTTTCCGCTTCCTGGCG...................................................................................................................	22	2	3.00	1.00	0.00	0.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTAGCG...................................................................................................................	22	2	3.00	1.00	0.50	0.50	0.50	0.50
.................................................................................TATCTTTTTCCGCTTACTGGCG...................................................................................................................	22	2	3.00	2.50	0.50	0.00	0.00	0.00
.................................................................................TGTCTTTTTCTGCTTACTGGCG...................................................................................................................	22	2	3.00	1.50	0.00	0.00	1.50	0.00
.................................................................................TGTATTTTTCCGCTTACTGGCG...................................................................................................................	22	2	2.50	1.50	0.50	0.00	0.50	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCT...................................................................................................................	22	2	2.50	0.00	0.50	0.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCC...................................................................................................................	22	2	2.50	0.00	0.00	0.50	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACCGGCG...................................................................................................................	22	2	2.50	2.50	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCGT..................................................................................................................	23	2	2.50	1.00	1.50	0.00	0.00	0.00
.................................................................................GGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	2	2.50	2.50	0.00	0.00	0.00	0.00
................................................................................CTGTCTTTTTCCGCTTACTGGCG...................................................................................................................	23	2	2.50	2.00	0.00	0.00	0.50	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTA.................................................................................................................	24	2	2.50	0.00	0.50	1.00	1.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA............................................................................	23	2	2.50	0.50	0.00	2.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGC....................................................................................................................	21	2	2.50	0.00	1.00	0.00	1.50	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGCG...................................................................................................................	22	2	2.50	1.00	0.50	0.50	0.50	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTAA................................................................................................................	25	2	2.00	0.50	0.50	0.50	0.50	0.00
.................................................................................TGTCTTTTTCCTCTTACTGTCG...................................................................................................................	22	2	2.00	0.50	0.50	0.00	1.00	0.00
.................................................................................TGTCTTTTTCCACTTACTGGCG...................................................................................................................	22	2	2.00	0.50	1.00	0.00	0.00	0.50
.................................................................................TGTCTCTTTCCGCTTACTGGCG...................................................................................................................	22	2	2.00	2.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTACGCTTACTGGCG...................................................................................................................	22	2	2.00	1.00	0.00	0.50	0.50	0.00
.................................................................................TGTCCTTTTCCGCTTACTGGCG...................................................................................................................	22	2	2.00	1.00	0.00	0.50	0.50	0.00
.................................................................................TGTCTTTTTCCGCTTATTGGCG...................................................................................................................	22	2	2.00	1.50	0.00	0.00	0.50	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGAT.................................................................................................................	24	2	2.00	0.00	0.50	1.50	0.00	0.00
.................................................................................TGTCTTTCTCCGCTTACTGGCG...................................................................................................................	22	2	2.00	1.50	0.00	0.00	0.50	0.00
.................................................................................TGTCTTCTTCCGCTTACTGGCG...................................................................................................................	22	2	2.00	1.00	1.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTTCTGGCG...................................................................................................................	22	2	2.00	2.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTG.....................................................................................................................	20	2	1.50	0.00	1.50	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGTTTACTGGCG...................................................................................................................	22	2	1.50	0.50	0.00	0.00	1.00	0.00
.................................................................................TGTCTTTGTCCGCTTACTGGCG...................................................................................................................	22	2	1.50	0.50	0.00	0.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGC..................................................................................................................	23	2	1.50	1.00	0.00	0.50	0.00	0.00
.................................................................................TGTCTTTTTCCGCCTACTGGCG...................................................................................................................	22	2	1.50	0.00	0.00	0.50	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTGCTGGCG...................................................................................................................	22	2	1.50	1.00	0.00	0.00	0.50	0.00
.................................................................................TGTCTTTTTCCGCTCACTGGCG...................................................................................................................	22	2	1.50	0.50	0.50	0.50	0.00	0.00
.................................................................................TGTCTTTTTTCGCTTACTGGCG...................................................................................................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
.................................................................................TGACTTTTTCCGCTTACTGGCG...................................................................................................................	22	2	1.50	1.00	0.00	0.00	0.50	0.00
.................................................................................TGTCTGTTTCCGCTTACTGGCG...................................................................................................................	22	2	1.50	0.00	0.00	0.00	1.50	0.00
.................................................................................TGTCTTTTTCCGCTTACTGACG...................................................................................................................	22	2	1.50	1.00	0.00	0.00	0.50	0.00

droEre2

GA------------AA--------------------------TACACAAAGTGG-----ATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTCACTATGAGTTTGGCCAGCGACT------------------------------------------------TGCA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	4983.00	1456.00	888.00	0.00	2639.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	579.00	230.00	144.00	0.00	205.00
.................................................................................TGTCTTTTTCCGCTTACTGG.....................................................................................................................	20	1	284.00	4.00	21.00	0.00	259.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	203.00	59.00	23.00	0.00	121.00
.................................................................................TGTCTTTTTCCGCTTACTTGCG...................................................................................................................	22	1	172.00	118.00	19.00	0.00	35.00
.................................................................................TGTCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	163.00	87.00	56.00	0.00	20.00
.................................................................................TGTCTTTTTCCGCTTACTGGCT...................................................................................................................	22	1	56.00	29.00	15.00	0.00	12.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGA..................................................................................................................	23	1	41.00	1.00	12.00	0.00	28.00
.................................................................................TGTCTTTTTCCTCTTACTGGCG...................................................................................................................	22	1	40.00	22.00	6.00	0.00	12.00
.................................................................................TGTCTTTTTCCGCTTACTTGCGT..................................................................................................................	23	1	23.00	19.00	3.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTT.................................................................................................................	24	1	23.00	7.00	7.00	0.00	9.00
.................................................................................TGTCTTTTTCCGCTTACTGTCT...................................................................................................................	22	1	22.00	13.00	8.00	0.00	1.00
.................................................................................TGGCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	22.00	11.00	8.00	0.00	3.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTA.............................................................................	22	1	22.00	12.00	0.00	0.00	10.00
.................................................................................TGTATTTTTCCGCTTACTGGCG...................................................................................................................	22	1	21.00	0.00	0.00	0.00	21.00
.................................................................................TGTCTTTTTACGCTTACTGGCG...................................................................................................................	22	1	20.00	0.00	0.00	0.00	20.00
.................................................................................TGTCTTTTTCAGCTTACTGGCG...................................................................................................................	22	1	19.00	2.00	0.00	0.00	17.00
.................................................................................TGTCTTTTTCCGCTTACTTGC....................................................................................................................	21	1	18.00	12.00	3.00	0.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTTGCT...................................................................................................................	22	1	17.00	14.00	2.00	0.00	1.00
.................................................................................TGTCTTTTTCCGATTACTGGCG...................................................................................................................	22	1	17.00	3.00	0.00	0.00	14.00
.................................................................................TGTCTTTTTCCGCTTACTTTCG...................................................................................................................	22	1	16.00	11.00	5.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTCCTGGCG...................................................................................................................	22	1	15.00	7.00	5.00	0.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTGTCGT..................................................................................................................	23	1	15.00	12.00	2.00	0.00	1.00
.................................................................................TTTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	15.00	4.00	0.00	0.00	11.00
.................................................................................TGTCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	14.00	12.00	1.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTAATGGCG...................................................................................................................	22	1	12.00	2.00	1.00	0.00	9.00
.................................................................................TGTCTTTTTCCGCTTACTGGAG...................................................................................................................	22	1	12.00	2.00	1.00	0.00	9.00
.................................................................................TGTCTTTTTCCGCTTACTCGCG...................................................................................................................	22	1	11.00	3.00	2.00	0.00	6.00
.................................................................................TGTCTTTTTCCGCTTACTG......................................................................................................................	19	1	11.00	1.00	0.00	0.00	10.00
.................................................................................TGTCTTTTTCCTCTTACTGTCG...................................................................................................................	22	1	11.00	9.00	2.00	0.00	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	10.00	3.00	0.00	0.00	7.00
.................................................................................TGTCTTTTTCCGCTTACTGTC....................................................................................................................	21	1	8.00	4.00	2.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGGCC...................................................................................................................	22	1	8.00	6.00	1.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCA...................................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
.................................................................................TGTCTTTTTCCCCTTACTGGCG...................................................................................................................	22	1	7.00	4.00	3.00	0.00	0.00
.................................................................................TGTCxTTTTCCGCTTACTGGCG...................................................................................................................	21	1	7.00	0.00	1.00	0.00	6.00
.................................................................................TGTCTTTTTCCGCTTACTAGCG...................................................................................................................	22	1	6.00	3.00	3.00	0.00	0.00
.................................................................................TGTCCTTTTCCGCTTACTGGCG...................................................................................................................	22	1	6.00	2.00	1.00	0.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	6.00	4.00	1.00	0.00	1.00
.................................................................................TATCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	6.00	3.00	1.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGACGT..................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCTT..................................................................................................................	23	1	5.00	3.00	2.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTA.................................................................................................................	24	1	5.00	0.00	0.00	0.00	5.00
.................................................................................TGTCTTTTTCAGCTTACTGGCGT..................................................................................................................	23	1	5.00	1.00	0.00	0.00	4.00
.................................................................................TGTCTTTTTCCTCTTACTTGCG...................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGA....................................................................................................................	21	1	5.00	0.00	1.00	0.00	4.00
.....................................................................................TTTTTCCGCTTACTGGCG...................................................................................................................	18	1	5.00	1.00	0.00	0.00	4.00
.................................................................................TGTCTCTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	1.00	0.00	0.00	4.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGC..................................................................................................................	23	1	5.00	2.00	0.00	0.00	3.00
.................................................................................TGTCTTGTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	4.00	0.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGT....................................................................................................................	21	1	5.00	0.00	1.00	0.00	4.00
.................................................................................TGTCTTCTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	0.00	2.00	0.00	3.00
.................................................................................TCTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	1.00	0.00	0.00	4.00
.................................................................................TGTCTTTTTCTGCTTACTGGCG...................................................................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.................................................................................TGTCTTTTTCCGCTTACTTG.....................................................................................................................	20	1	4.00	1.00	2.00	0.00	1.00
.................................................................................TGTCTTTTTCCACTTACTGGCG...................................................................................................................	22	1	4.00	2.00	1.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGTG...................................................................................................................	22	1	4.00	1.00	1.00	0.00	2.00
.................................................................................TGTCTTTTTCAGCTTACTGG.....................................................................................................................	20	1	4.00	0.00	0.00	0.00	4.00
.................................................................................TGTCTTTTTCCGCTTACCGGCG...................................................................................................................	22	1	4.00	2.00	0.00	0.00	2.00
.................................................................................TGGCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
................................................................................CTGTCTTTTTCCGCTTACTGGCG...................................................................................................................	23	1	4.00	2.00	0.00	0.00	2.00
.................................................................................TGTCTTTGTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGC....................................................................................................................	21	1	3.00	1.00	0.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGAA.................................................................................................................	24	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TGTCTTTTTCCGCCTACTGGCG...................................................................................................................	22	1	3.00	1.00	1.00	0.00	1.00
.................................................................................TGTCTTTTTCGGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	1.00	0.00	2.00
.................................................................................TGGCTTTTTCCGCTTACTTGCG...................................................................................................................	22	1	3.00	2.00	0.00	0.00	1.00
.................................................................................TGTCxTTTTCCGCTTACTGG.....................................................................................................................	19	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTGT.....................................................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TGTGTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGGTGT..................................................................................................................	23	1	3.00	1.00	0.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTACAGGCG...................................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..................................................................................GTCTTTTTCCGCTTACTGGCG...................................................................................................................	21	1	3.00	1.00	0.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTACGGGCG...................................................................................................................	22	1	3.00	1.00	2.00	0.00	0.00
.................................................................................TGTCTTTTTCCGATTACTGG.....................................................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TGTCTTTTCCCGCTTACTGGC....................................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TGACTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.................................................................................TGTCTTTTTCCGTTTACTGGCG...................................................................................................................	22	1	3.00	2.00	1.00	0.00	0.00
.................................................................................CGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TGTCTTTTTCCGCTCACTGGCG...................................................................................................................	22	1	3.00	2.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTGCTGGCG...................................................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.................................................................................TGTCTTTTTCAGCTTACTGGC....................................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TGCCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	3.00	1.00	2.00	0.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGG.................................................................................	18	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTGGGG...................................................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.................................................................................TGTCTTTCTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTAA................................................................................................................	25	1	3.00	0.00	0.00	0.00	3.00

droEug1

GT-CGATCAGGCTATA----------------------------T-C--AGTGTACTATATATCT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTAAGAGTTTTGCCAACGATT------------------------------------------------CGCA

Size

Hit Count

Total Norm

droBia1

GT-CGAGCAGGCCAGA---------------------------------AGTGT-----ATACGT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTACACAACGACAGGAAAGGGAAAAAGGCGTATTTACTACGAGTTTGACCAACGATT------------------------------------------------TGCA

Size

Hit Count

Total Norm

droTak1

GC-C--------TAAA---------------------------------AGTGT-----ACACAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATATTAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGCCAACAATT------------------------------------------------TCCA

Size

Hit Count

Total Norm

droEle1

GT-CCGACGGACTAAA---------------------------------AGTGT-----ATACAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAAAAACGACAGGAAAGGGAAAAAGGCGTATTTACTAAGAGTTTGACCAGCAATT------------------------------------------------TGCA

Size

Hit Count

Total Norm

droRho1

GT-CGAATAAACTAAA---------------------------------AGTGT-----ATATAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGCCAACAAT-------------------------------------------------TGCA

Size

Hit Count

Total Norm

droFic1

GT-CGGATAGACTAAA---------------------------------AGTTA-----ATGCAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGAAGTTTTATTTGAACAACGTCAGGAAAGGGAAAAAGGCGTATTTACTAAGAGTTTGGCCATCAGTT-----T---CA--CC---------------------------------TTCA

Size

Hit Count

Total Norm

droKik1

AT------------AC---------------------------------AGTGTAACGTCTATAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGCCATCAAGC------------------------------------------------TATC

Size

Hit Count

Total Norm

droAna3

CA------------AG---------------------------------AACAT-----ATATTC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGTCAACATTT------------------------------------------------CGTC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	2025.00	454.00	631.00	751.00	189.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	1267.00	908.00	116.00	208.00	35.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	153.00	27.00	79.00	31.00	16.00
.................................................................................TGTCTTTTTCCGCTTACTGG.....................................................................................................................	20	1	116.00	30.00	72.00	14.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTT.................................................................................................................	24	1	111.00	77.00	21.00	13.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGG.................................................................................	18	1	103.00	88.00	10.00	3.00	2.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTA.............................................................................	22	1	85.00	67.00	8.00	5.00	5.00
.................................................................................TGTCTTTTTCCGCTTACTGGCT...................................................................................................................	22	1	47.00	16.00	12.00	17.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	43.00	2.00	14.00	19.00	8.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTTT................................................................................................................	25	1	30.00	21.00	4.00	5.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	28.00	0.00	10.00	18.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGA..................................................................................................................	23	1	27.00	1.00	19.00	7.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA.............................................................................	23	1	21.00	11.00	6.00	0.00	4.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGC................................................................................	19	1	20.00	19.00	1.00	0.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGG.................................................................................	19	1	19.00	19.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCG...................................................................................................................	22	1	19.00	2.00	3.00	2.00	12.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGT................................................................................	19	1	15.00	15.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGCG...................................................................................................................	22	1	15.00	3.00	3.00	3.00	6.00
.................................................................................TGTCTTTTTCCGATTACTGGCG...................................................................................................................	22	1	13.00	5.00	6.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCA...................................................................................................................	22	1	13.00	1.00	8.00	4.00	0.00
.................................................................................TGTCTTTTTCCGATTACTGGCGT..................................................................................................................	23	1	12.00	10.00	2.00	0.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGT..............................................................................	21	1	11.00	10.00	0.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTA.................................................................................................................	24	1	11.00	6.00	2.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGTGT..................................................................................................................	23	1	11.00	10.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGAG...................................................................................................................	22	1	10.00	2.00	7.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCGT..................................................................................................................	23	1	9.00	3.00	0.00	3.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTGGAGT..................................................................................................................	23	1	9.00	8.00	1.00	0.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	9.00	1.00	1.00	6.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGT....................................................................................................................	21	1	8.00	2.00	3.00	2.00	1.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCG...............................................................................	20	1	8.00	7.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGCGT..................................................................................................................	23	1	8.00	6.00	0.00	2.00	0.00
.................................................................................TGTCCTTTTCCGCTTACTGGCG...................................................................................................................	22	1	7.00	1.00	2.00	2.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTCGCG...................................................................................................................	22	1	7.00	0.00	0.00	7.00	0.00
.................................................................................TGTATTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	7.00	5.00	0.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	7.00	1.00	0.00	5.00	1.00
.................................................................................TGTCTTTTTCCGCTTTCTGGCG...................................................................................................................	22	1	7.00	3.00	2.00	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGAA.................................................................................................................	24	1	6.00	1.00	4.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCGT..................................................................................................................	23	1	6.00	0.00	0.00	2.00	4.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGT..............................................................................	22	1	6.00	4.00	2.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTTA................................................................................................................	25	1	6.00	5.00	0.00	1.00	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	6.00	0.00	0.00	5.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGTG...................................................................................................................	22	1	6.00	3.00	1.00	2.00	0.00
.................................................................................TGACTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	6.00	0.00	0.00	6.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGGGT..................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGC................................................................................	20	1	5.00	5.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCAGCTTACTGGCGT..................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCAGCTTACTGGCG...................................................................................................................	22	1	5.00	2.00	1.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGC..................................................................................................................	23	1	5.00	0.00	0.00	5.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTAT................................................................................................................	25	1	5.00	2.00	2.00	1.00	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	5.00	3.00	0.00	2.00	0.00
.................................................................................TTTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	2.00	1.00	1.00	1.00
.................................................................................TGTCTTTTTCCACTTACTGGCGT..................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTG......................................................................................................................	19	1	4.00	1.00	2.00	0.00	1.00
.................................................................................TGTCTTTTTCTGCTTACTGGCG...................................................................................................................	22	1	4.00	1.00	0.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGA....................................................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGA................................................................................	19	1	4.00	3.00	0.00	1.00	0.00
.................................................................................TATCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCT...................................................................................................................	22	1	4.00	0.00	0.00	3.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTAGCG...................................................................................................................	22	1	4.00	1.00	1.00	1.00	1.00
.................................................................................AGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	4.00	2.00	0.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	4.00	0.00	1.00	0.00	3.00
.................................................................................TGTATTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
.................................................................................TCTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	3.00	1.00	0.00	2.00	0.00
.................................................................................TGTCTTTTTCTGCTTACTGGCGT..................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TGTCTTTGTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	0.00	1.00	2.00
.................................................................................TGTCTTTTTCCGATTACTGGCGTT.................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGT.....................................................................................................................	20	1	3.00	1.00	2.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTCCG...................................................................................................................	22	1	3.00	0.00	0.00	2.00	1.00
.................................................................................TGTCTTTTTCCGCTTCCTGGCG...................................................................................................................	22	1	3.00	0.00	1.00	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGTC....................................................................................................................	21	1	3.00	1.00	1.00	0.00	1.00
.................................................................................TGTCTTTTTCCCCTTACTGGCG...................................................................................................................	22	1	3.00	1.00	1.00	1.00	0.00
..................................................................................GTCTTTTTCCGCTTACTGGCG...................................................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCG...............................................................................	21	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGATTACTGG.....................................................................................................................	20	1	3.00	2.00	1.00	0.00	0.00
.................................................................................TGTCxTTTTCCGCTTACTGGCG...................................................................................................................	21	1	3.00	2.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTAA................................................................................................................	25	1	3.00	1.00	1.00	1.00	0.00
.................................................................................TGTCTTTTTACGCTTACTGGCGT..................................................................................................................	23	1	3.00	2.00	0.00	1.00	0.00
.................................................................................TGTCTTTTTACGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................GGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	1.00	1.00	1.00	0.00
.................................................................................TGTCTTTTTCCCCTTACTGGCGT..................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTATTGGCG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGACTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGCT...................................................................................................................	22	1	3.00	1.00	0.00	1.00	1.00
.................................................................................TGTCTTTTTCGGCTTACTGGCG...................................................................................................................	22	1	3.00	2.00	0.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTTCTGGCGT..................................................................................................................	23	1	3.00	2.00	0.00	1.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCTA..............................................................................	21	1	3.00	0.00	3.00	0.00	0.00

droBip1

CA------------AA-----------------------GA-T-------ATAC-----ATATTC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAA------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

dp4

GT------------AA-----------------------AA-TATACAAA----------GATCA-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAA---------------------------------------------------ACA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5341.00	654.00	3220.00	1428.00	39.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	1395.00	641.00	496.00	258.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	281.00	47.00	137.00	61.00	36.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTA.............................................................................	22	1	161.00	121.00	38.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGG.....................................................................................................................	20	1	102.00	47.00	19.00	32.00	4.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTT.................................................................................................................	24	1	82.00	34.00	26.00	22.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	67.00	1.00	64.00	2.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	56.00	0.00	38.00	18.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	54.00	0.00	20.00	34.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTG......................................................................................................................	19	1	39.00	0.00	1.00	1.00	37.00
.................................................................................TGTCTTTTTCCGCTTACTTGCG...................................................................................................................	22	1	32.00	1.00	24.00	7.00	0.00
.................................................................................TGACTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	26.00	0.00	10.00	16.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGACGT..................................................................................................................	23	1	23.00	0.00	23.00	0.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGT..............................................................................	21	1	20.00	19.00	0.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCT...................................................................................................................	22	1	19.00	8.00	7.00	3.00	1.00
.................................................................................TGTCTTTTTCCGATTACTGGCG...................................................................................................................	22	1	18.00	0.00	12.00	5.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGAG...................................................................................................................	22	1	17.00	1.00	12.00	4.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTTT................................................................................................................	25	1	15.00	11.00	1.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGA..................................................................................................................	23	1	14.00	7.00	2.00	5.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCA...................................................................................................................	22	1	14.00	4.00	6.00	4.00	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	13.00	2.00	6.00	5.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTCGCG...................................................................................................................	22	1	12.00	2.00	6.00	4.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA.............................................................................	23	1	11.00	6.00	5.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTAGCG...................................................................................................................	22	1	10.00	0.00	7.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCCTACTGGCG...................................................................................................................	22	1	10.00	2.00	7.00	1.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGCG...................................................................................................................	22	1	10.00	2.00	4.00	4.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGC..................................................................................................................	23	1	9.00	3.00	3.00	3.00	0.00
.................................................................................TGTCTTTTTACGCTTACTGGCG...................................................................................................................	22	1	9.00	0.00	6.00	3.00	0.00
.................................................................................TGTCTTTTTCAGCTTACTGGCG...................................................................................................................	22	1	8.00	0.00	5.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCGT..................................................................................................................	23	1	8.00	0.00	8.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTAATGGCG...................................................................................................................	22	1	8.00	0.00	6.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCC...................................................................................................................	22	1	8.00	5.00	1.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTCCTGGCG...................................................................................................................	22	1	8.00	1.00	3.00	4.00	0.00
.................................................................................TGTCTTTTTCCGCTTACCGGCG...................................................................................................................	22	1	7.00	2.00	4.00	1.00	0.00
.................................................................................CGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	7.00	1.00	4.00	2.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCG...............................................................................	20	1	7.00	5.00	2.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTTCTGGCG...................................................................................................................	22	1	7.00	0.00	6.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTA.................................................................................................................	24	1	7.00	6.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGTG...................................................................................................................	22	1	7.00	1.00	5.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGT....................................................................................................................	21	1	7.00	5.00	0.00	2.00	0.00
.................................................................................TGTATTTTTCCGCTTACTGGCG...................................................................................................................	22	1	7.00	0.00	7.00	0.00	0.00
.................................................................................TATCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	6.00	1.00	5.00	0.00	0.00
.....................................................................................TTTTTCCGCTTACTGGCG...................................................................................................................	18	1	6.00	0.00	6.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	6.00	0.00	2.00	4.00	0.00
.................................................................................TGTCCTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	1.00	2.00	2.00	0.00
.................................................................................TGTCTTTTTCCACTTACTGGCG...................................................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
.................................................................................TGTCTTTTTTCGCTTACTGGCG...................................................................................................................	22	1	5.00	0.00	4.00	1.00	0.00
.................................................................................TGTCTTTTTCTGCTTACTGGCG...................................................................................................................	22	1	5.00	0.00	4.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTCACTGGCG...................................................................................................................	22	1	5.00	0.00	4.00	1.00	0.00
.................................................................................TGGCTTTTTCCGATTACTGGCG...................................................................................................................	22	1	4.00	0.00	2.00	2.00	0.00
.................................................................................TGTCTTTTTCCGTTTACTGGCG...................................................................................................................	22	1	4.00	0.00	3.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTATTGGCG...................................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGAGT..................................................................................................................	23	1	4.00	0.00	2.00	2.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGC................................................................................	19	1	4.00	0.00	3.00	1.00	0.00
.................................................................................TGACTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	4.00	0.00	3.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTC....................................................................................................................	21	1	4.00	0.00	0.00	4.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCGT..................................................................................................................	23	1	4.00	1.00	1.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTAGTGGCG...................................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTGCTGGCG...................................................................................................................	22	1	4.00	0.00	1.00	3.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA............................................................................	23	1	4.00	3.00	0.00	1.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGC................................................................................	20	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCCCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
................................................................................CTGTCTTTTTCCGCTTACTGGCG...................................................................................................................	23	1	3.00	0.00	1.00	2.00	0.00
.................................................................................TGTCTTTTTCAGCTTACTGGCGT..................................................................................................................	23	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTTCTTGCG...................................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.................................................................................TGTTTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGT.....................................................................................................................	20	1	3.00	1.00	1.00	0.00	1.00
.................................................................................TGGCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTTCGCTTACTGGCGT..................................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
..................................................................................GTCTTTTTCCGCTTACTGGCG...................................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
.................................................................................TGTCCTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	3.00	1.00	2.00	0.00	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	3.00	1.00	1.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCT...................................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.................................................................................TCTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	1.00	0.00	2.00	0.00
.................................................................................TGGCTTTTTACGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTTCG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTCCTGTCG...................................................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
.................................................................................TGTCTTTTGCCGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACGGGCG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCTTTATCCGCTTACTGGCG...................................................................................................................	22	1	3.00	1.00	2.00	0.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
....................................................................................CTTTTTCCGCTTACTGGCG...................................................................................................................	19	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGG.................................................................................	18	1	3.00	2.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCAGCTTTCTGGCG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTGTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00

droPer1

GT------------AA-----------------------AA-TATACAAA----------GATCA-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAA---------------------------------------------------ACA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	2317.00	103.00	883.00	507.00	518.00	306.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	590.00	124.00	135.00	164.00	164.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	289.00	6.00	84.00	28.00	22.00	149.00
.................................................................................TGTCTTTTTCCGCTTACTG......................................................................................................................	19	1	191.00	1.00	3.00	1.00	1.00	185.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTA.............................................................................	22	1	114.00	90.00	6.00	1.00	13.00	4.00
.................................................................................TGTCTTTTTCCGCTTACTGG.....................................................................................................................	20	1	77.00	9.00	11.00	21.00	15.00	21.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTT.................................................................................................................	24	1	43.00	7.00	9.00	14.00	13.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	22.00	0.00	4.00	10.00	8.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGA..................................................................................................................	23	1	20.00	1.00	1.00	11.00	7.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGC................................................................................	20	1	17.00	16.00	1.00	0.00	0.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA.............................................................................	23	1	17.00	13.00	3.00	0.00	1.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	14.00	0.00	2.00	1.00	11.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCT...................................................................................................................	22	1	13.00	0.00	1.00	5.00	2.00	5.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGT..............................................................................	21	1	11.00	10.00	0.00	0.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTTT................................................................................................................	25	1	11.00	2.00	2.00	0.00	7.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGAC....................................................................................................................	21	1	10.00	0.00	1.00	0.00	0.00	9.00
.................................................................................TGTCTTTTTCCGCTTACTTGCG...................................................................................................................	22	1	8.00	0.00	5.00	1.00	2.00	0.00
.................................................................................TGACTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	8.00	0.00	1.00	2.00	4.00	1.00
.................................................................................TGGCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	7.00	0.00	0.00	1.00	6.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCGT..................................................................................................................	23	1	7.00	2.00	1.00	3.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGAG...................................................................................................................	22	1	7.00	0.00	4.00	2.00	1.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGC................................................................................	19	1	7.00	7.00	0.00	0.00	0.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA............................................................................	23	1	6.00	5.00	0.00	0.00	1.00	0.00
.................................................................................TGACTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	6.00	0.00	0.00	0.00	6.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGCG...................................................................................................................	22	1	6.00	0.00	3.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	6.00	0.00	1.00	3.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTA.................................................................................................................	24	1	5.00	0.00	0.00	1.00	4.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGG.................................................................................	19	1	5.00	5.00	0.00	0.00	0.00	0.00
.................................................................................AGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	0.00	1.00	0.00	3.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGC..................................................................................................................	23	1	5.00	0.00	0.00	1.00	3.00	1.00
.................................................................................TGTCTTTTTCCGCCTACTGGCG...................................................................................................................	22	1	5.00	0.00	0.00	1.00	3.00	1.00
.................................................................................TGTCTTTTTCCCCTTACTGGCG...................................................................................................................	22	1	4.00	0.00	1.00	1.00	0.00	2.00
.................................................................................TGTCTCTTTCCGCTTACTGGCG...................................................................................................................	22	1	4.00	1.00	1.00	2.00	0.00	0.00
.................................................................................TGTCTTTTTACGCTTACTGGCG...................................................................................................................	22	1	4.00	0.00	1.00	1.00	2.00	0.00
.................................................................................TGTCTTTTTCCGATTACTGGCG...................................................................................................................	22	1	4.00	0.00	3.00	0.00	1.00	0.00
.................................................................................CGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCC...................................................................................................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCG...............................................................................	20	1	4.00	4.00	0.00	0.00	0.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCG...............................................................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGT....................................................................................................................	21	1	4.00	0.00	0.00	1.00	3.00	0.00
.....................................................................................TTTTTCCGCTTACTGGCG...................................................................................................................	18	1	4.00	1.00	0.00	0.00	1.00	2.00
.................................................................................GGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCTT..................................................................................................................	23	1	3.00	0.00	1.00	1.00	1.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTAA............................................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTAATGGCG...................................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCA...................................................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
.................................................................................TGTTTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	3.00	0.00	1.00	0.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTTCTGGCG...................................................................................................................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCGT..................................................................................................................	23	1	3.00	0.00	0.00	0.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTCGCG...................................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
.................................................................................TGTATTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	1.00	1.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCT...................................................................................................................	22	1	3.00	0.00	2.00	0.00	1.00	0.00

droWil1

AT------------AT---------------------------------AATGT-----ATGTAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAACTAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTAATCAACAAAT------------------------------------------------T---	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	15260.00	494.00	13307.00	1043.00	416.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	2117.00	487.00	1544.00	83.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTG......................................................................................................................	19	1	1068.00	0.00	3.00	2.00	1063.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	833.00	28.00	150.00	62.00	593.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTA.............................................................................	22	1	309.00	62.00	241.00	5.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGG.....................................................................................................................	20	1	284.00	16.00	80.00	92.00	96.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTT.................................................................................................................	24	1	191.00	27.00	148.00	16.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCT...................................................................................................................	22	1	40.00	3.00	21.00	5.00	11.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGA..................................................................................................................	23	1	36.00	4.00	10.00	20.00	2.00
.................................................................................TGCCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	34.00	0.00	29.00	3.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGGAG...................................................................................................................	22	1	31.00	0.00	27.00	4.00	0.00
.................................................................................TGTCxTTTTCCGCTTACTGGCG...................................................................................................................	21	1	31.00	2.00	25.00	4.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA.............................................................................	23	1	30.00	2.00	27.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCG...................................................................................................................	22	1	30.00	1.00	28.00	1.00	0.00
.................................................................................TGTCTTTTTACGCTTACTGGCG...................................................................................................................	22	1	26.00	0.00	20.00	5.00	1.00
.................................................................................TGTCCTTTTCCGCTTACTGGCG...................................................................................................................	22	1	26.00	1.00	21.00	4.00	0.00
.................................................................................CGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	26.00	0.00	21.00	5.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	25.00	0.00	25.00	0.00	0.00
.................................................................................TGTCTTTTTCAGCTTACTGGCG...................................................................................................................	22	1	24.00	0.00	22.00	2.00	0.00
.................................................................................TGTATTTTTCCGCTTACTGGCG...................................................................................................................	22	1	22.00	0.00	18.00	4.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGT..............................................................................	21	1	22.00	5.00	17.00	0.00	0.00
.................................................................................TGTCTTTTTCCGATTACTGGCG...................................................................................................................	22	1	21.00	0.00	17.00	3.00	1.00
.................................................................................TGTCTTTTTCCTCTTACTGGCG...................................................................................................................	22	1	19.00	1.00	16.00	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACCGGCG...................................................................................................................	22	1	18.00	0.00	15.00	3.00	0.00
.................................................................................TGTCTCTTTCCGCTTACTGGCG...................................................................................................................	22	1	17.00	1.00	13.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	16.00	1.00	13.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCC...................................................................................................................	22	1	16.00	0.00	13.00	3.00	0.00
.................................................................................TTTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	16.00	1.00	15.00	0.00	0.00
.................................................................................TGTCTTTCTCCGCTTACTGGCG...................................................................................................................	22	1	14.00	0.00	13.00	1.00	0.00
.................................................................................TGTCTTTTTCCACTTACTGGCG...................................................................................................................	22	1	13.00	0.00	12.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGAC....................................................................................................................	21	1	13.00	0.00	0.00	0.00	13.00
.................................................................................TGTCTTTTTCCGCTTACTGGCA...................................................................................................................	22	1	13.00	0.00	9.00	3.00	1.00
.................................................................................TGTCTTTTTCCGCTTCCTGGCG...................................................................................................................	22	1	13.00	0.00	10.00	3.00	0.00
.................................................................................TGTCTTCTTCCGCTTACTGGCG...................................................................................................................	22	1	13.00	0.00	13.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTATTGGCG...................................................................................................................	22	1	12.00	0.00	12.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCCTACTGGCG...................................................................................................................	22	1	11.00	1.00	9.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTAATGGCG...................................................................................................................	22	1	11.00	0.00	8.00	3.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	11.00	0.00	9.00	1.00	1.00
.................................................................................TGTCTTTTCCCGCTTACTGGCG...................................................................................................................	22	1	11.00	1.00	9.00	0.00	1.00
.................................................................................TCTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	10.00	0.00	10.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTAGCG...................................................................................................................	22	1	10.00	1.00	8.00	1.00	0.00
..................................................................................GTCTTTTTCCGCTTACTGGCG...................................................................................................................	21	1	10.00	0.00	8.00	2.00	0.00
.................................................................................TGTCTTTTTCTGCTTACTGGCG...................................................................................................................	22	1	10.00	1.00	8.00	1.00	0.00
.................................................................................TGTCTTTTTCCCCTTACTGGCG...................................................................................................................	22	1	9.00	0.00	7.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGTG...................................................................................................................	22	1	9.00	0.00	8.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	9.00	1.00	6.00	2.00	0.00
.....................................................................................................................CGACAGGAAAGGGAAAAAGGCGTA.............................................................................	24	1	8.00	1.00	7.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGCG....................................................................................................................	21	1	8.00	0.00	8.00	0.00	0.00
................................................................................CTGTCTTTTTCCGCTTACTGGCG...................................................................................................................	23	1	8.00	0.00	7.00	1.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGC................................................................................	19	1	8.00	6.00	1.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGC..................................................................................................................	23	1	7.00	0.00	5.00	2.00	0.00
.................................................................................TGTCTTTTTCxxCTTACTGGCG...................................................................................................................	20	1	7.00	2.00	4.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTCACTGGCG...................................................................................................................	22	1	7.00	0.00	5.00	1.00	1.00
.................................................................................TATCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	7.00	0.00	6.00	0.00	1.00
.....................................................................................TTTTTCCGCTTACTGGCG...................................................................................................................	18	1	7.00	0.00	7.00	0.00	0.00
...................................................................................TGTCTTTCCGCTTACTGGCG...................................................................................................................	20	1	7.00	0.00	5.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGAGT..................................................................................................................	23	1	6.00	0.00	6.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTTT................................................................................................................	25	1	6.00	3.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCTT..................................................................................................................	23	1	6.00	1.00	5.00	0.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCG...............................................................................	20	1	6.00	4.00	2.00	0.00	0.00
.................................................................................TGTCTTTTTACGCTTACTGGCGT..................................................................................................................	23	1	6.00	0.00	6.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTCGCG...................................................................................................................	22	1	6.00	0.00	6.00	0.00	0.00
.................................................................................TGTCTTTTTTCGCTTACTGGCG...................................................................................................................	22	1	6.00	0.00	6.00	0.00	0.00
.................................................................................TGTCTTTTTCCGTTTACTGGCG...................................................................................................................	22	1	5.00	0.00	3.00	2.00	0.00
.................................................................................TGTTTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACGG......................................................................................................................	19	1	5.00	0.00	0.00	0.00	5.00
.................................................................................TGTCTTTTTCCGCTTACTGGT....................................................................................................................	21	1	5.00	1.00	1.00	3.00	0.00
.................................................................................TGTCTTTTTCCGGTTACTGGC....................................................................................................................	21	1	5.00	0.00	0.00	0.00	5.00
.................................................................................TGTCTTTTTCCGCTTGCTGGCG...................................................................................................................	22	1	5.00	1.00	4.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTA.................................................................................................................	24	1	5.00	2.00	2.00	1.00	0.00
.......................................................................................................................ACAGGAAGGGGAAAAAGGCGTA.............................................................................	22	1	5.00	5.00	0.00	0.00	0.00
.................................................................................TGTCCTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	4.00	1.00	3.00	0.00	0.00
.................................................................................TGTCTTTTTCCGGTTACTGGCG...................................................................................................................	22	1	4.00	0.00	1.00	0.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTCG.....................................................................................................................	20	1	4.00	0.00	0.00	1.00	3.00
.................................................................................TGTCTTTTTCCACTTACTGGCGT..................................................................................................................	23	1	4.00	1.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCGT..................................................................................................................	23	1	4.00	1.00	3.00	0.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGCGT..................................................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
.................................................................................TGTGTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	4.00	0.00	3.00	1.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGG.................................................................................	18	1	4.00	2.00	2.00	0.00	0.00
.................................................................................CGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGGG...................................................................................................................	22	1	4.00	0.00	2.00	0.00	2.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA............................................................................	23	1	4.00	1.00	2.00	1.00	0.00
.................................................................................TGACTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	4.00	0.00	2.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCGT..................................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCG...............................................................................	21	1	3.00	2.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTAA................................................................................................................	25	1	3.00	0.00	0.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTAGCGT..................................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACCGGCGT..................................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.................................................................................GGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGATTACTG......................................................................................................................	19	1	3.00	0.00	0.00	0.00	3.00
...................................................................................TCTTTTTCCGCTTACTGGCG...................................................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
..................................................................................TTCTTTTTCCGCTTACTGGCG...................................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
.................................................................................TGTCTTCTTCCGCTTACTGGCGT..................................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGA....................................................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
.................................................................................TGTCTTTTTCCGCGTACTGGCG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCATACTGGCG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCxCTTACTGGCG...................................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGTGT..................................................................................................................	23	1	3.00	1.00	2.00	0.00	0.00

droVir3

AT------------AT---------------------------------CTTTG-----ATCTATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATTTGTTCAACCAATCTGTTTAAACA--CC--------------TATTCA--ATGAAAAGAAATGCT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3351.00	1445.00	750.00	701.00	356.00	99.00
.................................................................................TGTCTTTTTCCGCTTACTG......................................................................................................................	19	1	931.00	0.00	6.00	0.00	434.00	491.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	746.00	548.00	56.00	141.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	619.00	49.00	52.00	11.00	252.00	255.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTA.............................................................................	22	1	288.00	274.00	0.00	9.00	5.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGG.....................................................................................................................	20	1	224.00	57.00	60.00	1.00	70.00	36.00
.................................................................................TGTCTTTTTCCGCTTACTTGCG...................................................................................................................	22	1	60.00	1.00	10.00	49.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	58.00	1.00	10.00	46.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCT...................................................................................................................	22	1	55.00	13.00	8.00	16.00	7.00	11.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGT..............................................................................	21	1	47.00	45.00	0.00	0.00	2.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTT.................................................................................................................	24	1	38.00	27.00	3.00	8.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	26.00	3.00	17.00	6.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGA..................................................................................................................	23	1	26.00	8.00	16.00	2.00	0.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	23.00	2.00	20.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGCG...................................................................................................................	22	1	21.00	1.00	11.00	9.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGAC....................................................................................................................	21	1	18.00	0.00	0.00	0.00	6.00	12.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTA.................................................................................................................	24	1	17.00	10.00	7.00	0.00	0.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCG...............................................................................	20	1	16.00	12.00	0.00	0.00	4.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA............................................................................	23	1	15.00	14.00	0.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACGG......................................................................................................................	19	1	13.00	0.00	0.00	0.00	6.00	7.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGC................................................................................	19	1	12.00	12.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCTT..................................................................................................................	23	1	11.00	5.00	0.00	3.00	1.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGGCA...................................................................................................................	22	1	11.00	4.00	5.00	0.00	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTTGCGT..................................................................................................................	23	1	11.00	0.00	0.00	11.00	0.00	0.00
.................................................................................TGCCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	9.00	0.00	4.00	5.00	0.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA.............................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTTCG...................................................................................................................	22	1	9.00	0.00	0.00	9.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTCGCG...................................................................................................................	22	1	8.00	1.00	1.00	6.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGT....................................................................................................................	21	1	8.00	3.00	3.00	0.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTTT................................................................................................................	25	1	7.00	6.00	1.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGCC...................................................................................................................	22	1	7.00	4.00	1.00	1.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCGT..................................................................................................................	23	1	7.00	0.00	1.00	6.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCT...................................................................................................................	22	1	6.00	0.00	0.00	6.00	0.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTT.............................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGGCGT..................................................................................................................	23	1	6.00	0.00	1.00	5.00	0.00	0.00
.................................................................................TGTCTTTTTCCGATTACTGGCG...................................................................................................................	22	1	6.00	3.00	3.00	0.00	0.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	6.00	0.00	6.00	0.00	0.00	0.00
.......................................................................................................................ACAGGAAGGGGAAAAAGGCGTA.............................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCTCTTACTGTCG...................................................................................................................	22	1	6.00	0.00	1.00	5.00	0.00	0.00
.................................................................................TGTCTCTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	4.00	1.00	0.00	0.00	0.00
.................................................................................TGTCCTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	3.00	1.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCAGCTTACTGGCG...................................................................................................................	22	1	5.00	0.00	2.00	2.00	1.00	0.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTAT............................................................................	23	1	5.00	4.00	1.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTCCTGGCG...................................................................................................................	22	1	5.00	3.00	1.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGA....................................................................................................................	21	1	5.00	1.00	2.00	0.00	2.00	0.00
.................................................................................TGACTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	5.00	0.00	5.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGC....................................................................................................................	21	1	4.00	0.00	1.00	3.00	0.00	0.00
.................................................................................TGTCTTTTTCCCCTTACTGGCG...................................................................................................................	22	1	4.00	1.00	1.00	1.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTAGCG...................................................................................................................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCCTACTGGCG...................................................................................................................	22	1	4.00	3.00	0.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGT.....................................................................................................................	20	1	3.00	0.00	0.00	0.00	1.00	2.00
.................................................................................TGTCTTTTTCCGTTTACTGGCG...................................................................................................................	22	1	3.00	2.00	0.00	1.00	0.00	0.00
.................................................................................CGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACAGGCG...................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACGGGCG...................................................................................................................	22	1	3.00	0.00	1.00	2.00	0.00	0.00
.................................................................................TCTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................GGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	2.00	0.00	1.00	0.00	0.00
................................................................................CTGTCTTTTTCCGCTTACTGGCG...................................................................................................................	23	1	3.00	1.00	2.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTTCTGGCG...................................................................................................................	22	1	3.00	0.00	1.00	2.00	0.00	0.00
.................................................................................TGTCTTCTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	2.00	0.00	1.00	0.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTAACTGGCG...................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTCCG...................................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
.................................................................................CGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	3.00	1.00	1.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCTGCTTACTGGCG...................................................................................................................	22	1	3.00	1.00	0.00	2.00	0.00	0.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGT..............................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGGG....................................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.................................................................................TTTCTTTTTCCGCTTACTG......................................................................................................................	19	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................................ACAGGAAGGGGAAAAAGGCGT..............................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTTGCT...................................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
.................................................................................TGTCTTTTCCCGCTTACTGGCG...................................................................................................................	22	1	3.00	1.00	1.00	1.00	0.00	0.00

droMoj3

GATCTAACTGAATCGA---------------------------------TTTTT-----AT--ATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGACGTTTTATT-GAACAACGGCAGGGAAGGGAAAAAGGCGTATTTACTATGAATTATTTCAACGATA-----T---AAAAATTTCTATTAAAATAATAATCAGAGTGAGAGA----GGG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.................................................................................TGTCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	3561.00	627.00	684.00	591.00	1659.00
.................................................................................TGTCTTTTTCCGCTTACTGACGT..................................................................................................................	23	1	1685.00	1038.00	126.00	90.00	431.00
.......................................................................................................................GCAGGGAAGGGAAAAAGGCGTA.............................................................................	22	1	252.00	227.00	1.00	1.00	23.00
.................................................................................TGTCTTTTTCCGCTTACTGACGTT.................................................................................................................	24	1	116.00	75.00	7.00	5.00	29.00
.......................................................................................................................GCAGGGAAGGGAAAAAGGCGT..............................................................................	21	1	113.00	110.00	1.00	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	59.00	2.00	4.00	20.00	33.00
.................................................................................TGTCTTTTTCCGCTTACTTACG...................................................................................................................	22	1	52.00	0.00	7.00	37.00	8.00
......................................................................................................................GGCAGGGAAGGGAAAAAGGCGTA.............................................................................	23	1	49.00	40.00	0.00	0.00	9.00
.................................................................................TGTCTTTTTCCGCTTACTGAC....................................................................................................................	21	1	33.00	19.00	7.00	7.00	0.00
.................................................................................TGGCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	32.00	0.00	6.00	17.00	9.00
.................................................................................TGTCTTTTTCCGCTTACTGA.....................................................................................................................	20	1	32.00	8.00	15.00	8.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGACT...................................................................................................................	22	1	23.00	2.00	2.00	14.00	5.00
.................................................................................TGTCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	22.00	1.00	3.00	13.00	5.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	14.00	2.00	0.00	8.00	4.00
.................................................................................TGTCTTTTTCCGCTTCCTGACG...................................................................................................................	22	1	13.00	0.00	5.00	4.00	4.00
.................................................................................TGTCTTTTTCCGCTTACTGACGTTT................................................................................................................	25	1	12.00	11.00	0.00	0.00	1.00
.................................................................................TGACTTTTTCCGCTTACTGACG...................................................................................................................	22	1	12.00	1.00	6.00	2.00	3.00
.......................................................................................................................GCAGGGAGGGGAAAAAGGCGTA.............................................................................	22	1	11.00	10.00	1.00	0.00	0.00
.......................................................................................................................GCAGGGAAGGGAAAAAGGCG...............................................................................	20	1	10.00	10.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGACA...................................................................................................................	22	1	10.00	1.00	3.00	2.00	4.00
.......................................................................................................................GCAGGGAAGGGAAAAAGGCGTAT............................................................................	23	1	9.00	9.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGTCG...................................................................................................................	22	1	9.00	0.00	2.00	5.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTTACGT..................................................................................................................	23	1	8.00	0.00	2.00	4.00	2.00
.................................................................................TGTCTTTTTCCTCTTACTGACG...................................................................................................................	22	1	8.00	0.00	4.00	3.00	1.00
.................................................................................TATCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	8.00	2.00	1.00	1.00	4.00
.................................................................................TGGCTGTTTCCGCTTACTGACG...................................................................................................................	22	1	7.00	0.00	2.00	3.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGAAG...................................................................................................................	22	1	7.00	0.00	0.00	3.00	4.00
.................................................................................CGTCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	7.00	1.00	3.00	0.00	3.00
.................................................................................TGCCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	7.00	1.00	1.00	2.00	3.00
.................................................................................TGTCTTTTTTCGCTTACTGACG...................................................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
.......................................................................................................................GCAGGGAAGGGAAAAAGGC................................................................................	19	1	6.00	6.00	0.00	0.00	0.00
.......................................................................................................................GCAGGGAAGGGAAAAAGGCGTAA............................................................................	23	1	6.00	6.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCAGCTTACTGACGT..................................................................................................................	23	1	5.00	3.00	0.00	0.00	2.00
.................................................................................TGTCTCTTTCCGCTTACTGACG...................................................................................................................	22	1	5.00	1.00	0.00	1.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTCACG...................................................................................................................	22	1	5.00	0.00	2.00	1.00	2.00
.................................................................................TGTCTTTTTCCACTTACTGACG...................................................................................................................	22	1	5.00	0.00	1.00	1.00	3.00
.................................................................................TGTCTTTTTCCGTTTACTGACG...................................................................................................................	22	1	5.00	0.00	1.00	0.00	4.00
......................................................................................................................GGCAGGGAAGGGAAAAAGGCG...............................................................................	21	1	5.00	5.00	0.00	0.00	0.00
.................................................................................TGTCTTTTTCCGATTACTGACG...................................................................................................................	22	1	5.00	0.00	1.00	3.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	5.00	0.00	0.00	1.00	4.00
.................................................................................TGTCTTTTTCCGCTTACCGACG...................................................................................................................	22	1	5.00	0.00	3.00	1.00	1.00
.................................................................................TGTATTTTTCCGCTTACTGACG...................................................................................................................	22	1	5.00	0.00	2.00	2.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGATG...................................................................................................................	22	1	5.00	0.00	3.00	0.00	2.00
.................................................................................TGTCTTTTTCCGCTTAATGACG...................................................................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.................................................................................TGTCTTTTTCTGCTTACTGACG...................................................................................................................	22	1	4.00	0.00	2.00	1.00	1.00
.................................................................................TGCCTTTTTCCGCTTACTGACGT..................................................................................................................	23	1	4.00	3.00	0.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGACGC..................................................................................................................	23	1	4.00	3.00	1.00	0.00	0.00
.................................................................................TGTCTTTTTCCGCTTGCTGACGT..................................................................................................................	23	1	4.00	2.00	1.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGACGTA.................................................................................................................	24	1	4.00	2.00	0.00	0.00	2.00
.................................................................................TGTCxTTTTCCGCTTACTGACG...................................................................................................................	21	1	4.00	2.00	0.00	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTTGCG...................................................................................................................	22	1	4.00	0.00	0.00	2.00	2.00
.................................................................................TGTCTTTTTCCGCCTACTGACG...................................................................................................................	22	1	4.00	1.00	1.00	1.00	1.00
.................................................................................TCTCTTTTTCCGCTTACTGACG...................................................................................................................	22	1	3.00	1.00	1.00	0.00	1.00
.................................................................................TGTCTTTTTACGCTTACTGACG...................................................................................................................	22	1	3.00	0.00	1.00	1.00	1.00
.................................................................................TGGCTTTTTCCGCTTACTGACGT..................................................................................................................	23	1	3.00	0.00	2.00	0.00	1.00
.................................................................................TGTCTTTTTCCTCTTACTGACGT..................................................................................................................	23	1	3.00	1.00	1.00	0.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTTACT...................................................................................................................	22	1	3.00	0.00	0.00	2.00	1.00
.................................................................................TGGCTTTTTCCGCTTACTGCCG...................................................................................................................	22	1	3.00	0.00	0.00	1.00	2.00
.................................................................................TGTCTTTTTGCGCTTACTGACG...................................................................................................................	22	1	3.00	0.00	0.00	1.00	2.00
.................................................................................TGTCTTTTTCCGCTTGCTGACG...................................................................................................................	22	1	3.00	0.00	2.00	0.00	1.00
.................................................................................TGTCTTTCTCCGCTTACTGACG...................................................................................................................	22	1	3.00	1.00	0.00	2.00	0.00
.....................................................................................TTTTTCCGCTTACTGACGT..................................................................................................................	19	1	3.00	2.00	0.00	0.00	1.00
....................................................................................CTTTTTCCGCTTACTGACG...................................................................................................................	19	1	3.00	0.00	1.00	0.00	2.00
.................................................................................TGACTTTTTCCGCTTACTGACGT..................................................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................................GCAGGGAAGGGAAAAAGGCGTT.............................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TGTGTTTTTCCGCTTACTGACG...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................TGTCTTTTTCCGCTTACTGACGTC.................................................................................................................	24	1	3.00	2.00	0.00	0.00	1.00

droGri2

TA-CCAG-AGACTAAACATTTTGTGTATAAGTATTGTATGATTAAGCAAT-----------CTTCAGAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATGTAATCAACAA------------------------------------------------------	Size	Hit Count	Total Norm	V109 Male body
.................................................................................TGTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	185.00	185.00
.................................................................................TGTCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	181.00	181.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTA.............................................................................	22	1	42.00	42.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTT.................................................................................................................	24	1	14.00	14.00
.......................................................................................................................ACAGGAAGGGGAAAAAGGCGTA.............................................................................	22	1	7.00	7.00
.................................................................................TGTCTTTTTCCGCTTACTGG.....................................................................................................................	20	1	5.00	5.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGT..............................................................................	21	1	3.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTGGC....................................................................................................................	21	1	3.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGC..................................................................................................................	23	1	3.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGG..................................................................................................................	23	1	3.00	3.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTTT................................................................................................................	25	1	2.00	2.00
.......................................................................................................................ACAGGAAACGGAAAAAGGCGTA.............................................................................	22	1	2.00	2.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGA..................................................................................................................	23	1	2.00	2.00
.................................................................................TGTCTTTTTCCGCTTACAGGCGT..................................................................................................................	23	1	2.00	2.00
.................................................................................TGTCTTATTCCGCTTACTGGCG...................................................................................................................	22	1	2.00	2.00
.......................................................................................................................ACAGGAAGGGGAAAAAGGCGT..............................................................................	21	1	2.00	2.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA.............................................................................	23	1	2.00	2.00
.................................................................................TGTCTTTTTCCGCTTACCGGCG...................................................................................................................	22	1	2.00	2.00
.................................................................................TGTCTTTTTCCGCTTACCGGCGT..................................................................................................................	23	1	2.00	2.00
.......................................................................................................................ACAGGGAAGGGAAAAAGGCGTT.............................................................................	22	1	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTCG.....................................................................................................................	20	1	1.00	1.00
.................................................................................TGTCTTTTGCCGCTTACTGGCGT..................................................................................................................	23	1	1.00	1.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTT.............................................................................	22	1	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTA.................................................................................................................	24	1	1.00	1.00
.................................................................................TGTCTTTTTGCGCTTACTGGCGT..................................................................................................................	23	1	1.00	1.00
.................................................................................TCTCTTTTTCCGCTTACTGGCGT..................................................................................................................	23	1	1.00	1.00
.................................................................................TGTCTTTTTCCTCTTACTGGCG...................................................................................................................	22	1	1.00	1.00
.................................................................................TGTCTTTTTACGCTTACTGGCG...................................................................................................................	22	1	1.00	1.00
.......................................................................................................................ACAGGAAATGGAAAAAGGCGTA.............................................................................	22	1	1.00	1.00
.................................................................................TGTCTTTTCCCGCTTACTGGCGT..................................................................................................................	23	1	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCT...................................................................................................................	22	1	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACCGGCGTT.................................................................................................................	24	1	1.00	1.00
.......................................................................................................................ACTGGAAAGGGAAAAAGGCGTA.............................................................................	22	1	1.00	1.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCG...............................................................................	20	1	1.00	1.00
.................................................................................TGCCTTTTTCCGCTTCCTGGCG...................................................................................................................	22	1	1.00	1.00
......................................................................................................................GACAGGAAAGGGAAAAAGGCGTT.............................................................................	23	1	1.00	1.00
.................................................................................TGTCTATTTCCGCTTACTGGCG...................................................................................................................	22	1	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCAT..................................................................................................................	23	1	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCTT..................................................................................................................	23	1	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGGCGTC.................................................................................................................	24	1	1.00	1.00
.................................................................................TGTCTTTTTCTGCTTACTGGCGT..................................................................................................................	23	1	1.00	1.00
.................................................................................TGTCTTTCTCCGCTTACTGGCG...................................................................................................................	22	1	1.00	1.00
.................................................................................TGCCTTTTTCCGCTTACTGGCG...................................................................................................................	22	1	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGACGT..................................................................................................................	23	1	1.00	1.00
.................................................................................TGTCTTCTTCCGCTTACTGGCGT..................................................................................................................	23	1	1.00	1.00
.......................................................................................................................ACAGGATAGGGAAAAAGGCGTA.............................................................................	22	1	1.00	1.00
.......................................................................................................................ACAGGAGAGGGAAAAAGGCGTA.............................................................................	22	1	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACTGCCGT..................................................................................................................	23	1	1.00	1.00
.................................................................................TGTCTTTTTxCGCTTACTGGCGT..................................................................................................................	22	1	1.00	1.00
.................................................................................TGTCCTTTTCCGCTTACTGGCG...................................................................................................................	22	1	1.00	1.00
.......................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA............................................................................	23	1	1.00	1.00
.................................................................................TGTCTTTTTCCGCTTACAGGCG...................................................................................................................	22	1	1.00	1.00

Generated: 04/20/2012 at 05:21:40 EDT

dme-mir-316

chr3L:21661814-21661902 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup