dme-mir-316- 12- and 20-way alignments

dme-mir-316	chr3L:21661814-21661902 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 21661866-21661887
   star strand at position 21661828-21661849
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3L:21661799-21661917 -	GAAAA---------------------------------GTGGATAC------------------AC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTCAGCGATTT-------GCA
droSim1	chr3L:21004826-21004944 -	GAAAA---------------------------------GTGGATAC------------------AC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACTT-------GCA
droSec1	super_11:1581867-1581985 -	GAAAA---------------------------------GTGGATAC------------------AC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACTT-------GCA
droYak2	chr3L:18849495-18849613 +	GAAAA---------------------------------GTGGATAC------------------AC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGACCAGCGATTT-------GCA
droEre2	scaffold_4784:21318808-21318933 -	GAAAT-------------------------ACACAAA-GTGGATAC------------------AC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTCACTATGAGTTTGGCCAGCGACTT-------GCA
droAna3	scaffold_13337:3985742-3985858 -	CAAGA---------------------------------ACATATAT------------------TC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGTCAACATTT---------CG
dp4	chrXR_group6:4548558-4548677 +	GTAAA-----------------------ATATACAAAG------AT-------------------CAAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAAA----------CA
droPer1	super_9:2845596-2845715 +	GTAAA-----------------------ATATACAAAG------AT-------------------CAAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAAA----------CA
droWil1	scaffold_180698:1092691-1092813 +	tTtTt---------------------------------ATGTATGT------------------AT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAACTAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTAATCAACAAATTCTCC---ACA
droVir3	scaffold_13049:24266810-24266939 +	TTAACTTGATT-------------------GTATATC-TTTGATCT------------------ATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATTTGTTCAACCAAT---------CT
droMoj3	scaffold_6680:18891158-18891318 +	ATA-CTTAATTGTCAAAATAATA---------------TTTGATCTAACTGAATCGATTTTTATATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGACGTTTTATT-GAACAACGGCAGGGAAGGGAAAAAGGCGTATTTACTATGAATTATTTCAACGtTtTtttttTTTgT
droGri2	scaffold_15110:9482040-9482178 -	ATTTT----GTGTATAAGTATTGTATGATTAAGCAATC-------T------------------TCAGAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATGTAATCAACAAAC---------CT

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3L:21661799-21661917 -	NA	GAAAA--------------------------------------------GTGGA-----TACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTGCTCAGCGATT------------------------------TGCA
droSim1	chr3L:21004826-21004944 -	4	GAAAA--------------------------------------------GTGGA-----TACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTGCCCAGCGACT------------------------------TGCA
droSec1	super_11:1581867-1581985 -	12	GAAAA--------------------------------------------GTGGA-----TACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTGCCCAGCGACT------------------------------TGCA
droYak2	chr3L:18849495-18849613 +	2	GAAAA--------------------------------------------GTGGA-----TACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTGACCAGCGATT------------------------------TGCA
droEre2	scaffold_4784:21318808-21318933 -	5	GAAA--TACAC--AA---------------------------------AGTGGA-----TACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCG---------------------TATTCACTATGAGTTTGGCCAGCGACT------------------------------TGCA
droEug1	scf7180000409472:489571-489707 -	3	GTCGATCAGGCTATA-----------T-------------------C-AGTGTACTATATATCT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTAAACAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTAAGAGTTTTGCCAACGATT------------------------------CGCA
droBia1	scf7180000302377:1644754-1644883 +	3	GTCGAGCAGGCCAGA---------------------------------AGTGTA-----TACGT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTACACAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTACGAGTTTGACCAACGATT------------------------------TGCA
droTak1	scf7180000411025:47424-47545 +	1	GCC--------TAAA---------------------------------AGTGTA-----CACAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATATTAACAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTGGCCAACAATT------------------------------TCCA
droEle1	scf7180000491199:1233814-1233943 +	16	GTCCGACGGACTAAA---------------------------------AGTGTA-----TACAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAAAAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTAAGAGTTTGACCAGCAATT------------------------------TGCA
droRho1	scf7180000780271:105025-105153 +	4	GTCGAATAAACTAAA---------------------------------AGTGTA-----TATAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAAACAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTGGCCAACAAT-------------------------------TGCA
droFic1	scf7180000453831:502029-502163 -	6	GTCGGATAGACTAAA---------------------------------AGTTAA-----TGCAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGAAGTTTTATTTGAACAACGTCAGGAAAGGGAAAAAGGCG---------------------TATTTACTAAGAGTTTGGCCATCAGTT-----T---CACC-----------------TTCA
droKik1	scf7180000302272:829434-829557 +	1	ATACA--------------------------------------------GTGTAACGTCTATAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGAGCAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTGGCCATCAAGC------------------------------TATC
droAna3	scaffold_13337:3985740-3985858 -	8	CAAGA--------------------------------------------ACATA-----TATTC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTGGTCAACATTT------------------------------CGTC
droBip1	scf7180000395450:119505-119589 -	2	CAAAGATAT------------------------------------------ACA-----TATTC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAA---------------------------------------------------------------------------------------
dp4	chrXR_group6:4548558-4548677 +	2	GTAAAATATAC-----------------------------------AA----------AGATCA-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTATCCAACAA---------------------------------ACA
droPer1	super_9:2845596-2845715 +	3	GTAAAATATAC-----------------------------------AA----------AGATCA-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTATCCAACAA---------------------------------ACA
droWil1	scaffold_180698:1092691-1092806 +	3	ATATA--------------------------------------------ATGTA-----TGTAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAACTAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAGTTTAATCAACAAAT------------------------------T---
droVir3	scaffold_13049:24266823-24266971 +	12	ATATC--------------------------------------------TTTGA-----TCTATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAATTTGTTCAACCAATCTGTTTAAACACCTATTCAATGAAAAGAAATGCT
droMoj3	scaffold_6500:8551365-8551472 +	14	AAAAGA--------------------------------------------CGG----------C-AAATTCCTCTCATCTTTTTTTTTTTTTTTT--------------------------CGAAAGTCAAAAAGACGTCAGTGACAGGTCGCTTAAAATATTTATAATATTTATAAACGGCAATA------------------------------C-AA
droGri2	scaffold_15110:9482044-9482193 -	32	TACCAG-AGACTAAACATTTTGTGTATAAGTATTGTATGATTAAGCAA----------TCTT-CAGAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCG---------------------TATTTACTATGAATGTAATCAACAA------------------------------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

GAAAA---------------------------------GTGGATAC------------------AC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTCAGCGATTT-------GCA

Size

Hit Count

Total Norm

droSim1

GAAAA---------------------------------GTGGATAC------------------AC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACTT-------GCA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................................................................TGTCTTTTTCCGCTTACTG.............................................................................	19	1	9427.00	0.00	6654.00	2619.00	154.00
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	5108.00	2443.00	467.00	717.00	1481.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	3802.00	98.00	2087.00	1271.00	346.00
..................................................................................TGTCTTTTTCCGCTTACTGG............................................................................	20	1	715.00	4.00	286.00	276.00	149.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	325.00	299.00	4.00	6.00	16.00
..................................................................................TGTCTTTTTCCGCTTACTGGCT..........................................................................	22	1	206.00	8.00	113.00	73.00	12.00
..................................................................................TGTCTTTTTCCGCTTACTGAC...........................................................................	21	1	166.00	0.00	114.00	44.00	8.00
..................................................................................TGTCTTTTTCCGCTTACGG.............................................................................	19	1	97.00	0.00	59.00	33.00	5.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTA....................................	22	1	32.00	21.00	0.00	1.00	10.00
..................................................................................TGTCTTTTTCCGCTTACTTGCG..........................................................................	22	1	30.00	29.00	0.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCTG.........................................................................	23	1	26.00	0.00	16.00	9.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTT........................................................................	24	1	24.00	23.00	0.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGA............................................................................	20	1	23.00	0.00	16.00	7.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGA...........................................................................	21	1	22.00	0.00	14.00	8.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGGCG..........................................................................	22	1	20.00	20.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCA..........................................................................	22	1	18.00	3.00	5.00	8.00	2.00
..................................................................................TGCCTTTTTCCGCTTACTG.............................................................................	19	1	15.00	0.00	9.00	6.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGT...........................................................................	21	1	12.00	1.00	6.00	5.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCC..........................................................................	22	1	11.00	2.00	5.00	3.00	1.00
..................................................................................TTTCTTTTTCCGCTTACTG.............................................................................	19	1	11.00	0.00	8.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGAG..........................................................................	22	1	10.00	9.00	0.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGT............................................................................	20	1	10.00	0.00	6.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCG..........................................................................	22	1	10.00	10.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACT..............................................................................	18	1	10.00	0.00	4.00	6.00	0.00
..................................................................................TGCCTTTTTCCGCTTACTGGC...........................................................................	21	1	9.00	0.00	5.00	3.00	1.00
..................................................................................TGCCTTTTTCCGCTTACTGGCG..........................................................................	22	1	9.00	6.00	0.00	1.00	2.00
..................................................................................TGTCTTTTTACGCTTACTGGCG..........................................................................	22	1	7.00	4.00	0.00	2.00	1.00
..................................................................................TGTCCTTTTCCGCTTACTGGCG..........................................................................	22	1	7.00	5.00	0.00	1.00	1.00
..................................................................................TGTCCTTTTCCGCTTACTG.............................................................................	19	1	7.00	0.00	4.00	3.00	0.00
.....................................................................................CTTTTTCCGCTTACTGGCG..........................................................................	19	1	7.00	4.00	0.00	0.00	3.00
.................................................................................TTGTCTTTTTCCGCTTACTG.............................................................................	20	1	7.00	0.00	4.00	3.00	0.00
..................................................................................TATCTTTTTCCGCTTACTG.............................................................................	19	1	7.00	0.00	6.00	1.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCG......................................	20	1	6.00	1.00	0.00	1.00	4.00
..................................................................................TCTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	6.00	2.00	0.00	0.00	4.00
..................................................................................TGTCxTTTTCCGCTTACTG.............................................................................	18	1	6.00	0.00	4.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGG...........................................................................	21	1	6.00	0.00	3.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCCTACTGGCG..........................................................................	22	1	6.00	5.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTA.............................................................................	19	1	6.00	0.00	4.00	2.00	0.00
..................................................................................TTTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	6.00	1.00	0.00	0.00	5.00
....................................................................................TCTTTTTCCGCTTACTGGCG..........................................................................	20	1	6.00	2.00	1.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACCG.............................................................................	19	1	6.00	0.00	0.00	6.00	0.00
..................................................................................TGTCTTTTTCCGCCTACTG.............................................................................	19	1	6.00	0.00	3.00	3.00	0.00
..................................................................................TGTCTTTTTTCGCTTACTGGCG..........................................................................	22	1	6.00	6.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGTG..........................................................................	22	1	6.00	3.00	0.00	0.00	3.00
..................................................................................TGTCTTTTTCCGCTTTCTGGCG..........................................................................	22	1	6.00	6.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTCCTGGCG..........................................................................	22	1	5.00	4.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCCCTTACTGGCG..........................................................................	22	1	5.00	1.00	0.00	1.00	3.00
...................................................................................GTCTTTTTCCGCTTACTG.............................................................................	18	1	5.00	0.00	4.00	1.00	0.00
..................................................................................TGACTTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	4.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCGT.........................................................................	23	1	4.00	2.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCCGTTTACTGGCG..........................................................................	22	1	4.00	2.00	1.00	0.00	1.00
..................................................................................CGTCTTTTTCCGCTTACTG.............................................................................	19	1	4.00	0.00	4.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTC.............................................................................	19	1	4.00	1.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACCGGCG..........................................................................	22	1	4.00	2.00	1.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGC.........................................................................	23	1	4.00	1.00	0.00	2.00	1.00
..................................................................................TCTCTTTTTCCGCTTACTGGC...........................................................................	21	1	4.00	0.00	1.00	1.00	2.00
..................................................................................TGTCTTTTTCCTCTTACTGGCG..........................................................................	22	1	4.00	1.00	0.00	0.00	3.00
..................................................................................TGTCTTTTCCCGCTTACTG.............................................................................	19	1	4.00	0.00	3.00	1.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA....................................	23	1	4.00	3.00	0.00	1.00	0.00
.................................................................................CTGTCTTTTTCCGCTTACTGGCG..........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................................................TGTCTCTTTCCGCTTACTG.............................................................................	19	1	4.00	0.00	3.00	1.00	0.00
..................................................................................TGTCTTTTTCCACTTACTG.............................................................................	19	1	4.00	0.00	2.00	2.00	0.00
..................................................................................TATCTTTTTCCGCTTACTGGCG..........................................................................	22	1	4.00	3.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCAGCTTACTGGCG..........................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTGCTG.............................................................................	19	1	4.00	0.00	3.00	1.00	0.00
..................................................................................TGTCTTTTTCCACTTACTGGC...........................................................................	21	1	4.00	0.00	2.00	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTAGC...........................................................................	21	1	4.00	0.00	2.00	2.00	0.00
...................................................................................ATCTGTTTCCGCTTACTG.............................................................................	18	1	4.00	0.00	0.00	0.00	4.00
..................................................................................TGTCTTTTTCCGCTTACTGCCG..........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGC...........................................................................	21	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCxTTTTCCGCTTACTGGCG..........................................................................	21	1	3.00	2.00	0.00	1.00	0.00
..................................................................................TGTATTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................CGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGA.........................................................................	23	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTTCGCTTACTG.............................................................................	19	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGACTTTTTCCTCTTACTGGCG..........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTGCTGGCG..........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................CGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	2.00	0.00	0.00	1.00
.................................................................................TTGTCTTTTTCCGCTTACTGGC...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTTGC...........................................................................	21	1	3.00	2.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCxCTTACTGGCG..........................................................................	21	1	3.00	0.00	1.00	0.00	2.00
..................................................................................TGTCTTTTTCCGCTTACCGGC...........................................................................	21	1	3.00	0.00	1.00	2.00	0.00

droSec1

GAAAA---------------------------------GTGGATAC------------------AC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACTT-------GCA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	11985.00	889.00	9911.00	1185.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	3608.00	847.00	2586.00	175.00
..................................................................................TGTCTTTTTCCGCTTACTGG............................................................................	20	1	351.00	98.00	34.00	219.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGA.........................................................................	23	1	321.00	132.00	30.00	159.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	315.00	88.00	77.00	150.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTA....................................	22	1	297.00	167.00	129.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTT........................................................................	24	1	197.00	67.00	114.00	16.00
..................................................................................TGTCTTTTTCCGTTTACTGGCG..........................................................................	22	1	70.00	1.00	69.00	0.00
..................................................................................TGTCxTTTTCCGCTTACTGGCG..........................................................................	21	1	55.00	0.00	55.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGAT........................................................................	24	1	51.00	36.00	1.00	14.00
..................................................................................TGTCTTTTTTCGCTTACTGGCG..........................................................................	22	1	50.00	0.00	50.00	0.00
..................................................................................TGTCTCTTTCCGCTTACTGGCG..........................................................................	22	1	49.00	1.00	46.00	2.00
..................................................................................TGTCTTTTTCTGCTTACTGGCG..........................................................................	22	1	47.00	1.00	42.00	4.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGAA........................................................................	24	1	44.00	23.00	1.00	20.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA....................................	23	1	40.00	8.00	32.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCT..........................................................................	22	1	39.00	22.00	2.00	15.00
..................................................................................TGTCTTTTTCCGCTTACTGGA...........................................................................	21	1	39.00	10.00	0.00	29.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGT.....................................	21	1	38.00	32.00	6.00	0.00
..................................................................................TGTCTTTTTCCGCTTATTGGCG..........................................................................	22	1	32.00	0.00	30.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTA........................................................................	24	1	31.00	15.00	4.00	12.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGC.........................................................................	23	1	30.00	3.00	23.00	4.00
..................................................................................TGTCTTTTTCCGCTTACTGGCA..........................................................................	22	1	30.00	8.00	7.00	15.00
..................................................................................TGTCCTTTTCCGCTTACTGGCG..........................................................................	22	1	28.00	2.00	26.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGT...........................................................................	21	1	24.00	5.00	0.00	19.00
..................................................................................TGTCxTTTTCCGCTTACTGGCGT.........................................................................	22	1	20.00	0.00	19.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTTT.......................................................................	25	1	19.00	8.00	7.00	4.00
..................................................................................TGTCTTTTTCCGTTTACTGGCGT.........................................................................	23	1	17.00	0.00	17.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGC.......................................	19	1	16.00	4.00	12.00	0.00
..................................................................................TCTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	15.00	2.00	12.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTG.............................................................................	19	1	14.00	1.00	1.00	12.00
..................................................................................TGTCTTTTTCCGCTTCCTGGCG..........................................................................	22	1	14.00	0.00	14.00	0.00
..................................................................................TGTCTTTTTCCCCTTACTGGCG..........................................................................	22	1	14.00	1.00	12.00	1.00
..................................................................................CGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	14.00	0.00	13.00	1.00
..................................................................................TGTTTTTTTCCGCTTACTGGCG..........................................................................	22	1	13.00	0.00	13.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGCG..........................................................................	22	1	13.00	1.00	10.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTAGCG..........................................................................	22	1	13.00	6.00	6.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTAA.......................................................................	25	1	12.00	5.00	1.00	6.00
..................................................................................TTTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	12.00	0.00	12.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA...................................	23	1	12.00	11.00	1.00	0.00
..................................................................................TGCCTTTTTCCGCTTACTGGCG..........................................................................	22	1	12.00	0.00	10.00	2.00
..................................................................................TGTCCTTTTCCGCTTACTGGCGT.........................................................................	23	1	11.00	1.00	10.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGCCG..........................................................................	22	1	11.00	1.00	10.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGAG..........................................................................	22	1	11.00	2.00	8.00	1.00
..................................................................................TGTCTTTTTCxxCTTACTGGCG..........................................................................	20	1	11.00	0.00	11.00	0.00
..................................................................................TGTCTTTTTCCGCCTACTGGCG..........................................................................	22	1	11.00	2.00	7.00	2.00
..................................................................................TGTCTTCTTCCGCTTACTGGCG..........................................................................	22	1	11.00	0.00	10.00	1.00
..................................................................................TGTCTCTTTCCGCTTACTGGCGT.........................................................................	23	1	10.00	1.00	9.00	0.00
..................................................................................TGTCTTTCTCCGCTTACTGGCG..........................................................................	22	1	10.00	0.00	9.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGTGT.........................................................................	23	1	10.00	0.00	10.00	0.00
..................................................................................TATCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	9.00	3.00	6.00	0.00
..................................................................................TGTCTTTTTCTGCTTACTGGCGT.........................................................................	23	1	9.00	1.00	8.00	0.00
..................................................................................TGTCTTTTTCCGCTTACCGGCG..........................................................................	22	1	9.00	0.00	8.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTAGCGT.........................................................................	23	1	9.00	8.00	1.00	0.00
..................................................................................TGTCTTTTTCCACTTACTGGCG..........................................................................	22	1	9.00	1.00	6.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTCGCG..........................................................................	22	1	9.00	3.00	5.00	1.00
..................................................................................TGTCTTTTTCCGCTTGCTGGCG..........................................................................	22	1	9.00	0.00	9.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCG..........................................................................	22	1	9.00	5.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCG..........................................................................	22	1	9.00	3.00	6.00	0.00
..................................................................................TGTCTTTTTCCGCTAACTGGCG..........................................................................	22	1	9.00	0.00	9.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCGT.........................................................................	23	1	8.00	7.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTCACTGGCG..........................................................................	22	1	8.00	1.00	7.00	0.00
..................................................................................TGTCTTTTTCAGCTTACTGGCG..........................................................................	22	1	8.00	1.00	6.00	1.00
........................................................................................................................ACAGGAAGGGGAAAAAGGCGTA....................................	22	1	8.00	6.00	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTATTGGCGT.........................................................................	23	1	8.00	0.00	8.00	0.00
......................................................................................TTTTTCCGCTTACTGGCG..........................................................................	18	1	8.00	0.00	7.00	1.00
..................................................................................TGTTTTTTTCCGCTTACTGGCGT.........................................................................	23	1	8.00	0.00	6.00	2.00
..................................................................................TGTCTTTTCCCGCTTACTGGCG..........................................................................	22	1	8.00	0.00	8.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCG......................................	20	1	7.00	5.00	0.00	2.00
..................................................................................TGTCTTTTTACGCTTACTGGCG..........................................................................	22	1	7.00	0.00	4.00	3.00
........................................................................................................................ACAGGAAAGGGAAAAAGGTGTA....................................	22	1	7.00	1.00	6.00	0.00
..................................................................................TGTCTTTTTTCGCTTACTGGCGT.........................................................................	23	1	7.00	0.00	7.00	0.00
...................................................................................GTCTTTTTCCGCTTACTGGCG..........................................................................	21	1	7.00	0.00	6.00	1.00
.................................................................................CTGTCTTTTTCCGCTTACTGGCG..........................................................................	23	1	7.00	0.00	6.00	1.00
..................................................................................TATCTTTTTCCGCTTACTGGCG..........................................................................	22	1	7.00	1.00	5.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTCGCGT.........................................................................	23	1	7.00	4.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGTG..........................................................................	22	1	7.00	1.00	5.00	1.00
....................................................................................TGTCTTTCCGCTTACTGGCG..........................................................................	20	1	7.00	1.00	6.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCC..........................................................................	22	1	6.00	0.00	6.00	0.00
..................................................................................TGTCTTTTTCCGCTTACCGGCGT.........................................................................	23	1	6.00	1.00	4.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTAT.......................................................................	25	1	6.00	5.00	0.00	1.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTAT...................................	23	1	6.00	6.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGACG..........................................................................	22	1	6.00	0.00	3.00	3.00
..................................................................................TGTATTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	0.00	4.00	1.00
..................................................................................TCTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	5.00	3.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGT............................................................................	20	1	5.00	4.00	0.00	1.00
.....................................................................................CTTTTTCCGCTTACTGGCG..........................................................................	19	1	5.00	1.00	4.00	0.00
..................................................................................TGCCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	5.00	1.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTTA.......................................................................	25	1	5.00	4.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTTCTGGCG..........................................................................	22	1	5.00	1.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGCCGT.........................................................................	23	1	4.00	0.00	3.00	1.00
..................................................................................CGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	4.00	2.00	2.00	0.00
..................................................................................TGTCTTTTTCxxCTTACTGGCGT.........................................................................	21	1	4.00	1.00	2.00	1.00
..................................................................................TGTCTTTTCCCGCTTACTGGCGT.........................................................................	23	1	4.00	1.00	3.00	0.00
....................................................................................TCTTTTTCCGCTTACTGGCG..........................................................................	20	1	4.00	0.00	4.00	0.00
..................................................................................TGTCTTTTACCGCTTACTGGCG..........................................................................	22	1	4.00	0.00	3.00	1.00
..................................................................................TGGCTTTTTCCGCTTACTGGCG..........................................................................	22	1	4.00	0.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTC........................................................................	24	1	4.00	0.00	3.00	1.00
.....................................................................................CTTTTTCCGCTTACTGGCGT.........................................................................	20	1	3.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGAA..........................................................................	22	1	3.00	1.00	0.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGCTT.........................................................................	23	1	3.00	2.00	0.00	1.00

droYak2

GAAAA---------------------------------GTGGATAC------------------AC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGACCAGCGATTT-------GCA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3777.00	2412.00	387.00	248.00	525.00	205.00
..................................................................................TGTCTTTTTCCGCTTACTG.............................................................................	19	1	1194.00	1.00	3.00	1.00	4.00	1185.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	621.00	288.00	47.00	224.00	62.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	583.00	106.00	9.00	20.00	15.00	433.00
..................................................................................TGTCTTTTTCCGCTTACTGG............................................................................	20	1	113.00	5.00	6.00	35.00	17.00	50.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTA....................................	22	1	85.00	24.00	0.00	54.00	7.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCG..........................................................................	22	1	67.00	10.00	19.00	1.00	37.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCG..........................................................................	22	1	58.00	14.00	29.00	2.00	13.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCT..........................................................................	22	1	35.00	2.00	7.00	3.00	7.00	16.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTT........................................................................	24	1	28.00	11.00	2.00	13.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGA.........................................................................	23	1	18.00	4.00	3.00	3.00	7.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGAC...........................................................................	21	1	18.00	0.00	0.00	0.00	0.00	18.00
..................................................................................TGGCTTTTTCCGCTTACTGGCG..........................................................................	22	1	17.00	12.00	2.00	0.00	3.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGC.......................................	19	1	13.00	0.00	0.00	13.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACGG.............................................................................	19	1	9.00	0.00	0.00	0.00	0.00	9.00
..................................................................................TGTCTTTTTCCGCTTACTGTCGT.........................................................................	23	1	7.00	1.00	1.00	1.00	4.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGT.....................................	21	1	7.00	0.00	0.00	7.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCA..........................................................................	22	1	7.00	2.00	0.00	2.00	2.00	1.00
..................................................................................TGTCTTTTTCCTCTTACTGGCG..........................................................................	22	1	7.00	1.00	2.00	1.00	3.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA....................................	23	1	7.00	6.00	0.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGATTACTGGCG..........................................................................	22	1	7.00	5.00	0.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTCAGCTTACTGGCG..........................................................................	22	1	7.00	5.00	1.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGAG..........................................................................	22	1	6.00	4.00	1.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTCGCG..........................................................................	22	1	6.00	3.00	1.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTCCTGGCG..........................................................................	22	1	6.00	2.00	0.00	0.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTAGCG..........................................................................	22	1	6.00	2.00	1.00	1.00	1.00	1.00
..................................................................................TATCTTTTTCCGCTTACTGGCG..........................................................................	22	1	6.00	5.00	1.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCTGCTTACTGGCG..........................................................................	22	1	6.00	3.00	0.00	0.00	3.00	0.00
..................................................................................TGTATTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	3.00	1.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCT..........................................................................	22	1	5.00	0.00	1.00	0.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCC..........................................................................	22	1	5.00	0.00	0.00	1.00	2.00	2.00
..................................................................................TGTCTTTTTCCGCTTACCGGCG..........................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCGT.........................................................................	23	1	5.00	2.00	3.00	0.00	0.00	0.00
..................................................................................GGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.................................................................................CTGTCTTTTTCCGCTTACTGGCG..........................................................................	23	1	5.00	4.00	0.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTA........................................................................	24	1	5.00	0.00	1.00	2.00	2.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA...................................	23	1	5.00	1.00	0.00	4.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGC...........................................................................	21	1	5.00	0.00	2.00	0.00	3.00	0.00
..................................................................................TGCCTTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	2.00	1.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTAA.......................................................................	25	1	4.00	1.00	1.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGTCG..........................................................................	22	1	4.00	1.00	1.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCCACTTACTGGCG..........................................................................	22	1	4.00	1.00	2.00	0.00	0.00	1.00
..................................................................................TGTCTCTTTCCGCTTACTGGCG..........................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTACGCTTACTGGCG..........................................................................	22	1	4.00	2.00	0.00	1.00	1.00	0.00
..................................................................................TGTCCTTTTCCGCTTACTGGCG..........................................................................	22	1	4.00	2.00	0.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTATTGGCG..........................................................................	22	1	4.00	3.00	0.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGAT........................................................................	24	1	4.00	0.00	1.00	3.00	0.00	0.00
..................................................................................TGTCTTTCTCCGCTTACTGGCG..........................................................................	22	1	4.00	3.00	0.00	0.00	1.00	0.00
..................................................................................TGTCTTCTTCCGCTTACTGGCG..........................................................................	22	1	4.00	2.00	2.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTTCTGGCG..........................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTG............................................................................	20	1	3.00	0.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGTTTACTGGCG..........................................................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
..................................................................................TGTCTTTGTCCGCTTACTGGCG..........................................................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGC.........................................................................	23	1	3.00	2.00	0.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCCTACTGGCG..........................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTGCTGGCG..........................................................................	22	1	3.00	2.00	0.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTCACTGGCG..........................................................................	22	1	3.00	1.00	1.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTTCGCTTACTGGCG..........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................................................TGACTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	2.00	0.00	0.00	1.00	0.00
..................................................................................TGTCTGTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGACG..........................................................................	22	1	3.00	2.00	0.00	0.00	1.00	0.00

droEre2

GAAAT-------------------------ACACAAA-GTGGATAC------------------AC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTCACTATGAGTTTGGCCAGCGACTT-------GCA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	5684.00	1456.00	888.00	701.00	2639.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	720.00	230.00	144.00	141.00	205.00
..................................................................................TGTCTTTTTCCGCTTACTGG............................................................................	20	1	285.00	4.00	21.00	1.00	259.00
..................................................................................TGTCTTTTTCCGCTTACTTGCG..........................................................................	22	1	221.00	118.00	19.00	49.00	35.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	214.00	59.00	23.00	11.00	121.00
..................................................................................TGTCTTTTTCCGCTTACTGTCG..........................................................................	22	1	209.00	87.00	56.00	46.00	20.00
..................................................................................TGTCTTTTTCCGCTTACTGGCT..........................................................................	22	1	72.00	29.00	15.00	16.00	12.00
..................................................................................TGTCTTTTTCCTCTTACTGGCG..........................................................................	22	1	49.00	22.00	6.00	9.00	12.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGA.........................................................................	23	1	43.00	1.00	12.00	2.00	28.00
..................................................................................TGTCTTTTTCCGCTTACTTGCGT.........................................................................	23	1	34.00	19.00	3.00	11.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTT........................................................................	24	1	31.00	7.00	7.00	8.00	9.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTA....................................	22	1	31.00	12.00	0.00	9.00	10.00
..................................................................................TGTCTTTTTCCGCTTACTGTCT..........................................................................	22	1	28.00	13.00	8.00	6.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTTTCG..........................................................................	22	1	25.00	11.00	5.00	9.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGGCG..........................................................................	22	1	23.00	11.00	8.00	1.00	3.00
..................................................................................TGTATTTTTCCGCTTACTGGCG..........................................................................	22	1	22.00	0.00	0.00	1.00	21.00
..................................................................................TGTCTTTTTCCGCTTACTGTCGT.........................................................................	23	1	21.00	12.00	2.00	6.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTTGC...........................................................................	21	1	21.00	12.00	3.00	3.00	3.00
..................................................................................TGTCTTTTTCAGCTTACTGGCG..........................................................................	22	1	21.00	2.00	0.00	2.00	17.00
..................................................................................TGTCTTTTTCCGCTTACTTGCT..........................................................................	22	1	20.00	14.00	2.00	3.00	1.00
..................................................................................TGTCTTTTTACGCTTACTGGCG..........................................................................	22	1	20.00	0.00	0.00	0.00	20.00
..................................................................................TGTCTTTTTCCGATTACTGGCG..........................................................................	22	1	17.00	3.00	0.00	0.00	14.00
..................................................................................TGTCTTTTTCCGCTTACTCGCG..........................................................................	22	1	17.00	3.00	2.00	6.00	6.00
..................................................................................TGTCTTTTTCCGCTTCCTGGCG..........................................................................	22	1	16.00	7.00	5.00	1.00	3.00
..................................................................................TGTCTTTTTCCTCTTACTGTCG..........................................................................	22	1	16.00	9.00	2.00	5.00	0.00
..................................................................................TTTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	15.00	4.00	0.00	0.00	11.00
..................................................................................TGCCTTTTTCCGCTTACTGGCG..........................................................................	22	1	15.00	3.00	0.00	5.00	7.00
..................................................................................TGTCTTTTTCCGCTTACTGACG..........................................................................	22	1	14.00	12.00	1.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTAATGGCG..........................................................................	22	1	12.00	2.00	1.00	0.00	9.00
..................................................................................TGTCTTTTTCCGCTTACTGCCG..........................................................................	22	1	12.00	4.00	1.00	6.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGAG..........................................................................	22	1	12.00	2.00	1.00	0.00	9.00
..................................................................................TGTCTTTTTCCGCTTACTG.............................................................................	19	1	11.00	1.00	0.00	0.00	10.00
..................................................................................TGTCTTTTTCCGCTTACTAGCG..........................................................................	22	1	10.00	3.00	3.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCC..........................................................................	22	1	9.00	6.00	1.00	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGTC...........................................................................	21	1	8.00	4.00	2.00	0.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGCTT.........................................................................	23	1	8.00	3.00	2.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCA..........................................................................	22	1	8.00	0.00	0.00	0.00	8.00
..................................................................................TGTCTTTTTCCCCTTACTGGCG..........................................................................	22	1	8.00	4.00	3.00	1.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGCGT.........................................................................	23	1	7.00	2.00	0.00	5.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTTGCG..........................................................................	22	1	7.00	5.00	0.00	2.00	0.00
..................................................................................TGTCCTTTTCCGCTTACTGGCG..........................................................................	22	1	7.00	2.00	1.00	1.00	3.00
..................................................................................TATCTTTTTCCGCTTACTGGCG..........................................................................	22	1	7.00	3.00	1.00	1.00	2.00
..................................................................................TGTCxTTTTCCGCTTACTGGCG..........................................................................	21	1	7.00	0.00	1.00	0.00	6.00
..................................................................................TGTCTTTTTCTGCTTACTGGCG..........................................................................	22	1	6.00	0.00	0.00	2.00	4.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGC.........................................................................	23	1	6.00	2.00	0.00	1.00	3.00
..................................................................................TGTCTTCTTCCGCTTACTGGCG..........................................................................	22	1	6.00	0.00	2.00	1.00	3.00
..................................................................................TGTCTTTTTCCGCTTACCGGCG..........................................................................	22	1	6.00	2.00	0.00	2.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGACGT.........................................................................	23	1	5.00	5.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTA........................................................................	24	1	5.00	0.00	0.00	0.00	5.00
..................................................................................TGTCTTTTTCAGCTTACTGGCGT.........................................................................	23	1	5.00	1.00	0.00	0.00	4.00
..................................................................................TGTCTTTTTCCGCTTACTTCCG..........................................................................	22	1	5.00	2.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTG............................................................................	20	1	5.00	1.00	2.00	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGA...........................................................................	21	1	5.00	0.00	1.00	0.00	4.00
..................................................................................TGTCTTTTTCCGCTTACGGGCG..........................................................................	22	1	5.00	1.00	2.00	2.00	0.00
......................................................................................TTTTTCCGCTTACTGGCG..........................................................................	18	1	5.00	1.00	0.00	0.00	4.00
..................................................................................TGTCTCTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	1.00	0.00	0.00	4.00
..................................................................................TGTCTTGTTCCGCTTACTGGCG..........................................................................	22	1	5.00	4.00	0.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGT...........................................................................	21	1	5.00	0.00	1.00	0.00	4.00
..................................................................................TCTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	1.00	0.00	0.00	4.00
..................................................................................TGTCTTTTTCCGCCTACTGGCG..........................................................................	22	1	4.00	1.00	1.00	1.00	1.00
..................................................................................TGTCTTTTTCGGCTTACTGGCG..........................................................................	22	1	4.00	0.00	1.00	1.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGTGT.........................................................................	23	1	4.00	1.00	0.00	1.00	2.00
..................................................................................TGTCTTTTTCCACTTACTGGCG..........................................................................	22	1	4.00	2.00	1.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGTG..........................................................................	22	1	4.00	1.00	1.00	0.00	2.00
..................................................................................TGTCTTTTTCAGCTTACTGG............................................................................	20	1	4.00	0.00	0.00	0.00	4.00
..................................................................................TGTCTTTTTCCGTTTACTGGCG..........................................................................	22	1	4.00	2.00	1.00	1.00	0.00
..................................................................................CGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	4.00	0.00	0.00	1.00	3.00
..................................................................................TGTCTTTTTCCGCTTGCTGGCG..........................................................................	22	1	4.00	1.00	0.00	1.00	2.00
..................................................................................TGGCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
.................................................................................CTGTCTTTTTCCGCTTACTGGCG..........................................................................	23	1	4.00	2.00	0.00	0.00	2.00
..................................................................................TGTCTTTGTCCGCTTACTGGCG..........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGC...........................................................................	21	1	3.00	1.00	0.00	0.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGAA........................................................................	24	1	3.00	0.00	0.00	0.00	3.00
..................................................................................GGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	2.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTAGCGT.........................................................................	23	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTTGCG..........................................................................	22	1	3.00	2.00	0.00	0.00	1.00
..................................................................................TGTCxTTTTCCGCTTACTGG............................................................................	19	1	3.00	0.00	0.00	0.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTGT............................................................................	20	1	3.00	0.00	0.00	0.00	3.00
..................................................................................TGTGTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	1.00	0.00	0.00	2.00
..................................................................................TGTCTTTTTCCGCTTACAGGCG..........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
...................................................................................GTCTTTTTCCGCTTACTGGCG..........................................................................	21	1	3.00	1.00	0.00	0.00	2.00
..................................................................................TGTCTTTTTCCGATTACTGG............................................................................	20	1	3.00	0.00	0.00	0.00	3.00
..................................................................................TGTCTTTTCCCGCTTACTGGC...........................................................................	21	1	3.00	0.00	0.00	0.00	3.00
..................................................................................TGACTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	1.00	0.00	0.00	2.00
..................................................................................TGTCTTTTTCCGCTCACTGGCG..........................................................................	22	1	3.00	2.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCAGCTTACTGGC...........................................................................	21	1	3.00	0.00	0.00	0.00	3.00
..................................................................................TGCCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	3.00	1.00	2.00	0.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGG........................................	18	1	3.00	0.00	0.00	0.00	3.00
..................................................................................TGTCTTTTTCCGCTTTCTGGCG..........................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGGG..........................................................................	22	1	3.00	1.00	0.00	0.00	2.00
..................................................................................TGTCTTTCTCCGCTTACTGGCG..........................................................................	22	1	3.00	1.00	0.00	0.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTAA.......................................................................	25	1	3.00	0.00	0.00	0.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTTTCGT.........................................................................	23	1	3.00	1.00	0.00	2.00	0.00

droAna3

CAAGA---------------------------------ACATATAT------------------TC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGTCAACATTT---------CG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	2025.00	454.00	631.00	751.00	189.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	1267.00	908.00	116.00	208.00	35.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	153.00	27.00	79.00	31.00	16.00
..................................................................................TGTCTTTTTCCGCTTACTGG............................................................................	20	1	116.00	30.00	72.00	14.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTT........................................................................	24	1	111.00	77.00	21.00	13.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGG........................................	18	1	103.00	88.00	10.00	3.00	2.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTA....................................	22	1	85.00	67.00	8.00	5.00	5.00
..................................................................................TGTCTTTTTCCGCTTACTGGCT..........................................................................	22	1	47.00	16.00	12.00	17.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGTCG..........................................................................	22	1	43.00	2.00	14.00	19.00	8.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTTT.......................................................................	25	1	30.00	21.00	4.00	5.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGGCG..........................................................................	22	1	28.00	0.00	10.00	18.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGA.........................................................................	23	1	27.00	1.00	19.00	7.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA....................................	23	1	21.00	11.00	6.00	0.00	4.00
........................................................................................................................ACAGGAAAGGGAAAAAGGC.......................................	19	1	20.00	19.00	1.00	0.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGG........................................	19	1	19.00	19.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCG..........................................................................	22	1	19.00	2.00	3.00	2.00	12.00
........................................................................................................................ACAGGAAAGGGAAAAAGGT.......................................	19	1	15.00	15.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGCG..........................................................................	22	1	15.00	3.00	3.00	3.00	6.00
..................................................................................TGTCTTTTTCCGATTACTGGCG..........................................................................	22	1	13.00	5.00	6.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCA..........................................................................	22	1	13.00	1.00	8.00	4.00	0.00
..................................................................................TGTCTTTTTCCGATTACTGGCGT.........................................................................	23	1	12.00	10.00	2.00	0.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGT.....................................	21	1	11.00	10.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTA........................................................................	24	1	11.00	6.00	2.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGTGT.........................................................................	23	1	11.00	10.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGAG..........................................................................	22	1	10.00	2.00	7.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCGT.........................................................................	23	1	9.00	3.00	0.00	3.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTGGAGT.........................................................................	23	1	9.00	8.00	1.00	0.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	9.00	1.00	1.00	6.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGT...........................................................................	21	1	8.00	2.00	3.00	2.00	1.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCG......................................	20	1	8.00	7.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGCGT.........................................................................	23	1	8.00	6.00	0.00	2.00	0.00
..................................................................................TGTCCTTTTCCGCTTACTGGCG..........................................................................	22	1	7.00	1.00	2.00	2.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTCGCG..........................................................................	22	1	7.00	0.00	0.00	7.00	0.00
..................................................................................TGTATTTTTCCGCTTACTGGCGT.........................................................................	23	1	7.00	5.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGCCG..........................................................................	22	1	7.00	1.00	0.00	5.00	1.00
..................................................................................TGTCTTTTTCCGCTTTCTGGCG..........................................................................	22	1	7.00	3.00	2.00	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGAA........................................................................	24	1	6.00	1.00	4.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCGT.........................................................................	23	1	6.00	0.00	0.00	2.00	4.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGT.....................................	22	1	6.00	4.00	2.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTTA.......................................................................	25	1	6.00	5.00	0.00	1.00	0.00
..................................................................................TGCCTTTTTCCGCTTACTGGCG..........................................................................	22	1	6.00	0.00	0.00	5.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGTG..........................................................................	22	1	6.00	3.00	1.00	2.00	0.00
..................................................................................TGACTTTTTCCGCTTACTGGCG..........................................................................	22	1	6.00	0.00	0.00	6.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGGGT.........................................................................	23	1	5.00	5.00	0.00	0.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGC.......................................	20	1	5.00	5.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCAGCTTACTGGCGT.........................................................................	23	1	5.00	5.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCAGCTTACTGGCG..........................................................................	22	1	5.00	2.00	1.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGC.........................................................................	23	1	5.00	0.00	0.00	5.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTAT.......................................................................	25	1	5.00	2.00	2.00	1.00	0.00
..................................................................................TGCCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	5.00	3.00	0.00	2.00	0.00
..................................................................................TTTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	2.00	1.00	1.00	1.00
..................................................................................TGTCTTTTTCCACTTACTGGCGT.........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTG.............................................................................	19	1	4.00	1.00	2.00	0.00	1.00
..................................................................................TGTCTTTTTCTGCTTACTGGCG..........................................................................	22	1	4.00	1.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGA...........................................................................	21	1	4.00	0.00	4.00	0.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGA.......................................	19	1	4.00	3.00	0.00	1.00	0.00
..................................................................................TATCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCT..........................................................................	22	1	4.00	0.00	0.00	3.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTAGCG..........................................................................	22	1	4.00	1.00	1.00	1.00	1.00
..................................................................................AGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	4.00	2.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGACG..........................................................................	22	1	4.00	0.00	1.00	0.00	3.00
..................................................................................TGTATTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..................................................................................TCTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	3.00	1.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCTGCTTACTGGCGT.........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTGTCCGCTTACTGGCG..........................................................................	22	1	3.00	0.00	0.00	1.00	2.00
..................................................................................TGTCTTTTTCCGATTACTGGCGTT........................................................................	24	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGT............................................................................	20	1	3.00	1.00	2.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTCCG..........................................................................	22	1	3.00	0.00	0.00	2.00	1.00
..................................................................................TGTCTTTTTCCGCTTCCTGGCG..........................................................................	22	1	3.00	0.00	1.00	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGTC...........................................................................	21	1	3.00	1.00	1.00	0.00	1.00
..................................................................................TGTCTTTTTCCCCTTACTGGCG..........................................................................	22	1	3.00	1.00	1.00	1.00	0.00
...................................................................................GTCTTTTTCCGCTTACTGGCG..........................................................................	21	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCG......................................	21	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGATTACTGG............................................................................	20	1	3.00	2.00	1.00	0.00	0.00
..................................................................................TGTCxTTTTCCGCTTACTGGCG..........................................................................	21	1	3.00	2.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTAA.......................................................................	25	1	3.00	1.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTACGCTTACTGGCGT.........................................................................	23	1	3.00	2.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTACGCTTACTGGCG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................GGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	1.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTCCCCTTACTGGCGT.........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTATTGGCG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGACTTTTTCCGCTTACTGTCG..........................................................................	22	1	3.00	0.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGCT..........................................................................	22	1	3.00	1.00	0.00	1.00	1.00
..................................................................................TGTCTTTTTCGGCTTACTGGCG..........................................................................	22	1	3.00	2.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTTCTGGCGT.........................................................................	23	1	3.00	2.00	0.00	1.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCTA.....................................	21	1	3.00	0.00	3.00	0.00	0.00

dp4

GTAAA-----------------------ATATACAAAG------AT-------------------CAAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAAA----------CA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	5341.00	654.00	3220.00	1428.00	39.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	1395.00	641.00	496.00	258.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	281.00	47.00	137.00	61.00	36.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTA....................................	22	1	161.00	121.00	38.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGG............................................................................	20	1	102.00	47.00	19.00	32.00	4.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTT........................................................................	24	1	82.00	34.00	26.00	22.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGACG..........................................................................	22	1	67.00	1.00	64.00	2.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGGCG..........................................................................	22	1	56.00	0.00	38.00	18.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCG..........................................................................	22	1	54.00	0.00	20.00	34.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTG.............................................................................	19	1	39.00	0.00	1.00	1.00	37.00
..................................................................................TGTCTTTTTCCGCTTACTTGCG..........................................................................	22	1	32.00	1.00	24.00	7.00	0.00
..................................................................................TGACTTTTTCCGCTTACTGGCG..........................................................................	22	1	26.00	0.00	10.00	16.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGACGT.........................................................................	23	1	23.00	0.00	23.00	0.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGT.....................................	21	1	20.00	19.00	0.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCT..........................................................................	22	1	19.00	8.00	7.00	3.00	1.00
..................................................................................TGTCTTTTTCCGATTACTGGCG..........................................................................	22	1	18.00	0.00	12.00	5.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGAG..........................................................................	22	1	17.00	1.00	12.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTTT.......................................................................	25	1	15.00	11.00	1.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGA.........................................................................	23	1	14.00	7.00	2.00	5.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCA..........................................................................	22	1	14.00	4.00	6.00	4.00	0.00
..................................................................................TGCCTTTTTCCGCTTACTGGCG..........................................................................	22	1	13.00	2.00	6.00	5.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTCGCG..........................................................................	22	1	12.00	2.00	6.00	4.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA....................................	23	1	11.00	6.00	5.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTAGCG..........................................................................	22	1	10.00	0.00	7.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCCTACTGGCG..........................................................................	22	1	10.00	2.00	7.00	1.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGCG..........................................................................	22	1	10.00	2.00	4.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGC.........................................................................	23	1	9.00	3.00	3.00	3.00	0.00
..................................................................................TGTCTTTTTACGCTTACTGGCG..........................................................................	22	1	9.00	0.00	6.00	3.00	0.00
..................................................................................TGTCTTTTTCAGCTTACTGGCG..........................................................................	22	1	8.00	0.00	5.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCGT.........................................................................	23	1	8.00	0.00	8.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTAATGGCG..........................................................................	22	1	8.00	0.00	6.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCC..........................................................................	22	1	8.00	5.00	1.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTCCTGGCG..........................................................................	22	1	8.00	1.00	3.00	4.00	0.00
..................................................................................TGTCTTTTTCCGCTTACCGGCG..........................................................................	22	1	7.00	2.00	4.00	1.00	0.00
..................................................................................CGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	7.00	1.00	4.00	2.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCG......................................	20	1	7.00	5.00	2.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTTCTGGCG..........................................................................	22	1	7.00	0.00	6.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTA........................................................................	24	1	7.00	6.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGTG..........................................................................	22	1	7.00	1.00	5.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGT...........................................................................	21	1	7.00	5.00	0.00	2.00	0.00
..................................................................................TGTATTTTTCCGCTTACTGGCG..........................................................................	22	1	7.00	0.00	7.00	0.00	0.00
..................................................................................TATCTTTTTCCGCTTACTGGCG..........................................................................	22	1	6.00	1.00	5.00	0.00	0.00
......................................................................................TTTTTCCGCTTACTGGCG..........................................................................	18	1	6.00	0.00	6.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGCCG..........................................................................	22	1	6.00	0.00	2.00	4.00	0.00
..................................................................................TGTCCTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	1.00	2.00	2.00	0.00
..................................................................................TGTCTTTTTCCACTTACTGGCG..........................................................................	22	1	5.00	0.00	5.00	0.00	0.00
..................................................................................TGTCTTTTTTCGCTTACTGGCG..........................................................................	22	1	5.00	0.00	4.00	1.00	0.00
..................................................................................TGTCTTTTTCTGCTTACTGGCG..........................................................................	22	1	5.00	0.00	4.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTCACTGGCG..........................................................................	22	1	5.00	0.00	4.00	1.00	0.00
..................................................................................TGGCTTTTTCCGATTACTGGCG..........................................................................	22	1	4.00	0.00	2.00	2.00	0.00
..................................................................................TGTCTTTTTCCGTTTACTGGCG..........................................................................	22	1	4.00	0.00	3.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTATTGGCG..........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGAGT.........................................................................	23	1	4.00	0.00	2.00	2.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGC.......................................	19	1	4.00	0.00	3.00	1.00	0.00
..................................................................................TGACTTTTTCCGCTTACTGGCGT.........................................................................	23	1	4.00	0.00	3.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTC...........................................................................	21	1	4.00	0.00	0.00	4.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCGT.........................................................................	23	1	4.00	1.00	1.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTAGTGGCG..........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTGCTGGCG..........................................................................	22	1	4.00	0.00	1.00	3.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA...................................	23	1	4.00	3.00	0.00	1.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGC.......................................	20	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCCCTTACTGGCG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.................................................................................CTGTCTTTTTCCGCTTACTGGCG..........................................................................	23	1	3.00	0.00	1.00	2.00	0.00
..................................................................................TGTCTTTTTCAGCTTACTGGCGT.........................................................................	23	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTTCTTGCG..........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................TGTTTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGT............................................................................	20	1	3.00	1.00	1.00	0.00	1.00
..................................................................................TGGCTTTTTCCGCTTACTGGC...........................................................................	21	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTTCGCTTACTGGCGT.........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................................................................GTCTTTTTCCGCTTACTGGCG..........................................................................	21	1	3.00	0.00	3.00	0.00	0.00
..................................................................................TGTCCTTTTCCGCTTACTGGCGT.........................................................................	23	1	3.00	1.00	2.00	0.00	0.00
..................................................................................TGCCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	3.00	1.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCT..........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................TCTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	1.00	0.00	2.00	0.00
..................................................................................TGGCTTTTTACGCTTACTGGCG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTTCG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTCCTGTCG..........................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..................................................................................TGTCTTTTGCCGCTTACTGGCG..........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACGGGCG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCTTTATCCGCTTACTGGCG..........................................................................	22	1	3.00	1.00	2.00	0.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGTCG..........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................CTTTTTCCGCTTACTGGCG..........................................................................	19	1	3.00	0.00	3.00	0.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGG........................................	18	1	3.00	2.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCAGCTTTCTGGCG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTGTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	0.00	3.00	0.00	0.00

droPer1

GTAAA-----------------------ATATACAAAG------AT-------------------CAAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAAA----------CA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	2317.00	103.00	883.00	507.00	518.00	306.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	590.00	124.00	135.00	164.00	164.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	289.00	6.00	84.00	28.00	22.00	149.00
..................................................................................TGTCTTTTTCCGCTTACTG.............................................................................	19	1	191.00	1.00	3.00	1.00	1.00	185.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTA....................................	22	1	114.00	90.00	6.00	1.00	13.00	4.00
..................................................................................TGTCTTTTTCCGCTTACTGG............................................................................	20	1	77.00	9.00	11.00	21.00	15.00	21.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTT........................................................................	24	1	43.00	7.00	9.00	14.00	13.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCG..........................................................................	22	1	22.00	0.00	4.00	10.00	8.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGA.........................................................................	23	1	20.00	1.00	1.00	11.00	7.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGC.......................................	20	1	17.00	16.00	1.00	0.00	0.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA....................................	23	1	17.00	13.00	3.00	0.00	1.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGGCG..........................................................................	22	1	14.00	0.00	2.00	1.00	11.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCT..........................................................................	22	1	13.00	0.00	1.00	5.00	2.00	5.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGT.....................................	21	1	11.00	10.00	0.00	0.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTTT.......................................................................	25	1	11.00	2.00	2.00	0.00	7.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGAC...........................................................................	21	1	10.00	0.00	1.00	0.00	0.00	9.00
..................................................................................TGTCTTTTTCCGCTTACTTGCG..........................................................................	22	1	8.00	0.00	5.00	1.00	2.00	0.00
..................................................................................TGACTTTTTCCGCTTACTGGCG..........................................................................	22	1	8.00	0.00	1.00	2.00	4.00	1.00
..................................................................................TGGCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	7.00	0.00	0.00	1.00	6.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCGT.........................................................................	23	1	7.00	2.00	1.00	3.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGAG..........................................................................	22	1	7.00	0.00	4.00	2.00	1.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGC.......................................	19	1	7.00	7.00	0.00	0.00	0.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA...................................	23	1	6.00	5.00	0.00	0.00	1.00	0.00
..................................................................................TGACTTTTTCCGCTTACTGGCGT.........................................................................	23	1	6.00	0.00	0.00	0.00	6.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGCG..........................................................................	22	1	6.00	0.00	3.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGCCG..........................................................................	22	1	6.00	0.00	1.00	3.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTA........................................................................	24	1	5.00	0.00	0.00	1.00	4.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGG........................................	19	1	5.00	5.00	0.00	0.00	0.00	0.00
..................................................................................AGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	0.00	1.00	0.00	3.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGC.........................................................................	23	1	5.00	0.00	0.00	1.00	3.00	1.00
..................................................................................TGTCTTTTTCCGCCTACTGGCG..........................................................................	22	1	5.00	0.00	0.00	1.00	3.00	1.00
..................................................................................TGTCTTTTTCCCCTTACTGGCG..........................................................................	22	1	4.00	0.00	1.00	1.00	0.00	2.00
..................................................................................TGTCTCTTTCCGCTTACTGGCG..........................................................................	22	1	4.00	1.00	1.00	2.00	0.00	0.00
..................................................................................TGTCTTTTTACGCTTACTGGCG..........................................................................	22	1	4.00	0.00	1.00	1.00	2.00	0.00
..................................................................................TGTCTTTTTCCGATTACTGGCG..........................................................................	22	1	4.00	0.00	3.00	0.00	1.00	0.00
..................................................................................CGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCC..........................................................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCG......................................	20	1	4.00	4.00	0.00	0.00	0.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCG......................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGT...........................................................................	21	1	4.00	0.00	0.00	1.00	3.00	0.00
......................................................................................TTTTTCCGCTTACTGGCG..........................................................................	18	1	4.00	1.00	0.00	0.00	1.00	2.00
..................................................................................GGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCTT.........................................................................	23	1	3.00	0.00	1.00	1.00	1.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTAA...................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGCCG..........................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTAATGGCG..........................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCA..........................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
..................................................................................TGTTTTTTTCCGCTTACTGGCGT.........................................................................	23	1	3.00	0.00	1.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTTCTGGCG..........................................................................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCGT.........................................................................	23	1	3.00	0.00	0.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTCGCG..........................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
..................................................................................TGTATTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	0.00	1.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCT..........................................................................	22	1	3.00	0.00	2.00	0.00	1.00	0.00

droWil1

tTtTt---------------------------------ATGTATGT------------------AT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAACTAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTAATCAACAAATTCTCC---ACA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	15260.00	494.00	13307.00	1043.00	416.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	2117.00	487.00	1544.00	83.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTG.............................................................................	19	1	1068.00	0.00	3.00	2.00	1063.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	833.00	28.00	150.00	62.00	593.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTA....................................	22	1	309.00	62.00	241.00	5.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGG............................................................................	20	1	284.00	16.00	80.00	92.00	96.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTT........................................................................	24	1	191.00	27.00	148.00	16.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCT..........................................................................	22	1	40.00	3.00	21.00	5.00	11.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGA.........................................................................	23	1	36.00	4.00	10.00	20.00	2.00
..................................................................................TGCCTTTTTCCGCTTACTGGCG..........................................................................	22	1	34.00	0.00	29.00	3.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGAG..........................................................................	22	1	31.00	0.00	27.00	4.00	0.00
..................................................................................TGTCxTTTTCCGCTTACTGGCG..........................................................................	21	1	31.00	2.00	25.00	4.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA....................................	23	1	30.00	2.00	27.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCG..........................................................................	22	1	30.00	1.00	28.00	1.00	0.00
..................................................................................TGTCTTTTTACGCTTACTGGCG..........................................................................	22	1	26.00	0.00	20.00	5.00	1.00
..................................................................................TGTCCTTTTCCGCTTACTGGCG..........................................................................	22	1	26.00	1.00	21.00	4.00	0.00
..................................................................................CGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	26.00	0.00	21.00	5.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCG..........................................................................	22	1	25.00	0.00	25.00	0.00	0.00
..................................................................................TGTCTTTTTCAGCTTACTGGCG..........................................................................	22	1	24.00	0.00	22.00	2.00	0.00
..................................................................................TGTATTTTTCCGCTTACTGGCG..........................................................................	22	1	22.00	0.00	18.00	4.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGT.....................................	21	1	22.00	5.00	17.00	0.00	0.00
..................................................................................TGTCTTTTTCCGATTACTGGCG..........................................................................	22	1	21.00	0.00	17.00	3.00	1.00
..................................................................................TGTCTTTTTCCTCTTACTGGCG..........................................................................	22	1	19.00	1.00	16.00	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACCGGCG..........................................................................	22	1	18.00	0.00	15.00	3.00	0.00
..................................................................................TGTCTCTTTCCGCTTACTGGCG..........................................................................	22	1	17.00	1.00	13.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGCCG..........................................................................	22	1	16.00	1.00	13.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCC..........................................................................	22	1	16.00	0.00	13.00	3.00	0.00
..................................................................................TTTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	16.00	1.00	15.00	0.00	0.00
..................................................................................TGTCTTTCTCCGCTTACTGGCG..........................................................................	22	1	14.00	0.00	13.00	1.00	0.00
..................................................................................TGTCTTTTTCCACTTACTGGCG..........................................................................	22	1	13.00	0.00	12.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGAC...........................................................................	21	1	13.00	0.00	0.00	0.00	13.00
..................................................................................TGTCTTTTTCCGCTTACTGGCA..........................................................................	22	1	13.00	0.00	9.00	3.00	1.00
..................................................................................TGTCTTTTTCCGCTTCCTGGCG..........................................................................	22	1	13.00	0.00	10.00	3.00	0.00
..................................................................................TGTCTTCTTCCGCTTACTGGCG..........................................................................	22	1	13.00	0.00	13.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTATTGGCG..........................................................................	22	1	12.00	0.00	12.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCCTACTGGCG..........................................................................	22	1	11.00	1.00	9.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTAATGGCG..........................................................................	22	1	11.00	0.00	8.00	3.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGGCG..........................................................................	22	1	11.00	0.00	9.00	1.00	1.00
..................................................................................TGTCTTTTCCCGCTTACTGGCG..........................................................................	22	1	11.00	1.00	9.00	0.00	1.00
..................................................................................TCTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	10.00	0.00	10.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTAGCG..........................................................................	22	1	10.00	1.00	8.00	1.00	0.00
...................................................................................GTCTTTTTCCGCTTACTGGCG..........................................................................	21	1	10.00	0.00	8.00	2.00	0.00
..................................................................................TGTCTTTTTCTGCTTACTGGCG..........................................................................	22	1	10.00	1.00	8.00	1.00	0.00
..................................................................................TGTCTTTTTCCCCTTACTGGCG..........................................................................	22	1	9.00	0.00	7.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGTG..........................................................................	22	1	9.00	0.00	8.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGACG..........................................................................	22	1	9.00	1.00	6.00	2.00	0.00
......................................................................................................................CGACAGGAAAGGGAAAAAGGCGTA....................................	24	1	8.00	1.00	7.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGCG...........................................................................	21	1	8.00	0.00	8.00	0.00	0.00
.................................................................................CTGTCTTTTTCCGCTTACTGGCG..........................................................................	23	1	8.00	0.00	7.00	1.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGC.......................................	19	1	8.00	6.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGC.........................................................................	23	1	7.00	0.00	5.00	2.00	0.00
..................................................................................TGTCTTTTTCxxCTTACTGGCG..........................................................................	20	1	7.00	2.00	4.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTCACTGGCG..........................................................................	22	1	7.00	0.00	5.00	1.00	1.00
..................................................................................TATCTTTTTCCGCTTACTGGCG..........................................................................	22	1	7.00	0.00	6.00	0.00	1.00
......................................................................................TTTTTCCGCTTACTGGCG..........................................................................	18	1	7.00	0.00	7.00	0.00	0.00
....................................................................................TGTCTTTCCGCTTACTGGCG..........................................................................	20	1	7.00	0.00	5.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGAGT.........................................................................	23	1	6.00	0.00	6.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTTT.......................................................................	25	1	6.00	3.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCTT.........................................................................	23	1	6.00	1.00	5.00	0.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCG......................................	20	1	6.00	4.00	2.00	0.00	0.00
..................................................................................TGTCTTTTTACGCTTACTGGCGT.........................................................................	23	1	6.00	0.00	6.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTCGCG..........................................................................	22	1	6.00	0.00	6.00	0.00	0.00
..................................................................................TGTCTTTTTTCGCTTACTGGCG..........................................................................	22	1	6.00	0.00	6.00	0.00	0.00
..................................................................................TGTCTTTTTCCGTTTACTGGCG..........................................................................	22	1	5.00	0.00	3.00	2.00	0.00
..................................................................................TGTTTTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	0.00	5.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACGG.............................................................................	19	1	5.00	0.00	0.00	0.00	5.00
..................................................................................TGTCTTTTTCCGCTTACTGGT...........................................................................	21	1	5.00	1.00	1.00	3.00	0.00
..................................................................................TGTCTTTTTCCGGTTACTGGC...........................................................................	21	1	5.00	0.00	0.00	0.00	5.00
..................................................................................TGTCTTTTTCCGCTTGCTGGCG..........................................................................	22	1	5.00	1.00	4.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTA........................................................................	24	1	5.00	2.00	2.00	1.00	0.00
........................................................................................................................ACAGGAAGGGGAAAAAGGCGTA....................................	22	1	5.00	5.00	0.00	0.00	0.00
..................................................................................TGTCCTTTTCCGCTTACTGGCGT.........................................................................	23	1	4.00	1.00	3.00	0.00	0.00
..................................................................................TGTCTTTTTCCGGTTACTGGCG..........................................................................	22	1	4.00	0.00	1.00	0.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTCG............................................................................	20	1	4.00	0.00	0.00	1.00	3.00
..................................................................................TGTCTTTTTCCACTTACTGGCGT.........................................................................	23	1	4.00	1.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCGT.........................................................................	23	1	4.00	1.00	3.00	0.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGCGT.........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
..................................................................................TGTGTTTTTCCGCTTACTGGCG..........................................................................	22	1	4.00	0.00	3.00	1.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGG........................................	18	1	4.00	2.00	2.00	0.00	0.00
..................................................................................CGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGGG..........................................................................	22	1	4.00	0.00	2.00	0.00	2.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA...................................	23	1	4.00	1.00	2.00	1.00	0.00
..................................................................................TGACTTTTTCCGCTTACTGGCG..........................................................................	22	1	4.00	0.00	2.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCGT.........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCG......................................	21	1	3.00	2.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTAA.......................................................................	25	1	3.00	0.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTAGCGT.........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACCGGCGT.........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
..................................................................................GGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGCCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	3.00	2.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGATTACTG.............................................................................	19	1	3.00	0.00	0.00	0.00	3.00
....................................................................................TCTTTTTCCGCTTACTGGCG..........................................................................	20	1	3.00	0.00	3.00	0.00	0.00
...................................................................................TTCTTTTTCCGCTTACTGGCG..........................................................................	21	1	3.00	0.00	3.00	0.00	0.00
..................................................................................TGTCTTCTTCCGCTTACTGGCGT.........................................................................	23	1	3.00	2.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGA...........................................................................	21	1	3.00	0.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCGTACTGGCG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCATACTGGCG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCxCTTACTGGCG..........................................................................	21	1	3.00	0.00	3.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGTGT.........................................................................	23	1	3.00	1.00	2.00	0.00	0.00

droVir3

TTAACTTGATT-------------------GTATATC-TTTGATCT------------------ATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATTTGTTCAACCAAT---------CT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3351.00	1445.00	750.00	701.00	356.00	99.00
..................................................................................TGTCTTTTTCCGCTTACTG.............................................................................	19	1	931.00	0.00	6.00	0.00	434.00	491.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	746.00	548.00	56.00	141.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	619.00	49.00	52.00	11.00	252.00	255.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTA....................................	22	1	288.00	274.00	0.00	9.00	5.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGG............................................................................	20	1	224.00	57.00	60.00	1.00	70.00	36.00
..................................................................................TGTCTTTTTCCGCTTACTTGCG..........................................................................	22	1	60.00	1.00	10.00	49.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCG..........................................................................	22	1	58.00	1.00	10.00	46.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCT..........................................................................	22	1	55.00	13.00	8.00	16.00	7.00	11.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGT.....................................	21	1	47.00	45.00	0.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTT........................................................................	24	1	38.00	27.00	3.00	8.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGA.........................................................................	23	1	26.00	8.00	16.00	2.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGCCG..........................................................................	22	1	26.00	3.00	17.00	6.00	0.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGGCG..........................................................................	22	1	23.00	2.00	20.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGCG..........................................................................	22	1	21.00	1.00	11.00	9.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGAC...........................................................................	21	1	18.00	0.00	0.00	0.00	6.00	12.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTA........................................................................	24	1	17.00	10.00	7.00	0.00	0.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCG......................................	20	1	16.00	12.00	0.00	0.00	4.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA...................................	23	1	15.00	14.00	0.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACGG.............................................................................	19	1	13.00	0.00	0.00	0.00	6.00	7.00
........................................................................................................................ACAGGAAAGGGAAAAAGGC.......................................	19	1	12.00	12.00	0.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCGT.........................................................................	23	1	11.00	0.00	0.00	11.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCTT.........................................................................	23	1	11.00	5.00	0.00	3.00	1.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGCA..........................................................................	22	1	11.00	4.00	5.00	0.00	1.00	1.00
..................................................................................TGCCTTTTTCCGCTTACTGGCG..........................................................................	22	1	9.00	0.00	4.00	5.00	0.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA....................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTTCG..........................................................................	22	1	9.00	0.00	0.00	9.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGT...........................................................................	21	1	8.00	3.00	3.00	0.00	0.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTCGCG..........................................................................	22	1	8.00	1.00	1.00	6.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCGT.........................................................................	23	1	7.00	0.00	1.00	6.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTTT.......................................................................	25	1	7.00	6.00	1.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGCC..........................................................................	22	1	7.00	4.00	1.00	1.00	1.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTT....................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCT..........................................................................	22	1	6.00	0.00	0.00	6.00	0.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGGCGT.........................................................................	23	1	6.00	0.00	1.00	5.00	0.00	0.00
........................................................................................................................ACAGGAAGGGGAAAAAGGCGTA....................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGATTACTGGCG..........................................................................	22	1	6.00	3.00	3.00	0.00	0.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	6.00	0.00	6.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCTCTTACTGTCG..........................................................................	22	1	6.00	0.00	1.00	5.00	0.00	0.00
..................................................................................TGTCTTTTTCAGCTTACTGGCG..........................................................................	22	1	5.00	0.00	2.00	2.00	1.00	0.00
..................................................................................TGTCTCTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	4.00	1.00	0.00	0.00	0.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTAT...................................	23	1	5.00	4.00	1.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGA...........................................................................	21	1	5.00	1.00	2.00	0.00	2.00	0.00
..................................................................................TGTCTTTTTCCGCTTCCTGGCG..........................................................................	22	1	5.00	3.00	1.00	1.00	0.00	0.00
..................................................................................TGACTTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	0.00	5.00	0.00	0.00	0.00
..................................................................................TGTCCTTTTCCGCTTACTGGCG..........................................................................	22	1	5.00	3.00	1.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGC...........................................................................	21	1	4.00	0.00	1.00	3.00	0.00	0.00
..................................................................................TGTCTTTTTCCCCTTACTGGCG..........................................................................	22	1	4.00	1.00	1.00	1.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTAGCG..........................................................................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCCTACTGGCG..........................................................................	22	1	4.00	3.00	0.00	1.00	0.00	0.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGT.....................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGTCG..........................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTGCT..........................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
..................................................................................CGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................CTGTCTTTTTCCGCTTACTGGCG..........................................................................	23	1	3.00	1.00	2.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTTCTGGCG..........................................................................	22	1	3.00	0.00	1.00	2.00	0.00	0.00
..................................................................................TGTCTTTTCCCGCTTACTGGCG..........................................................................	22	1	3.00	1.00	1.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGGG...........................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGTTTACTGGCG..........................................................................	22	1	3.00	2.00	0.00	1.00	0.00	0.00
..................................................................................TGTCTTCTTCCGCTTACTGGCG..........................................................................	22	1	3.00	2.00	0.00	1.00	0.00	0.00
..................................................................................TTTCTTTTTCCGCTTACTG.............................................................................	19	1	3.00	0.00	0.00	0.00	3.00	0.00
..................................................................................TGTCTTTTTCCGCTAACTGGCG..........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................................................GGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	2.00	0.00	1.00	0.00	0.00
..................................................................................TCTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................................................CGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	3.00	1.00	1.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTCCG..........................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACAGGCG..........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................ACAGGAAGGGGAAAAAGGCGT.....................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCTGCTTACTGGCG..........................................................................	22	1	3.00	1.00	0.00	2.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACGGGCG..........................................................................	22	1	3.00	0.00	1.00	2.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGT............................................................................	20	1	3.00	0.00	0.00	0.00	1.00	2.00

droMoj3

ATA-CTTAATTGTCAAAATAATA---------------TTTGATCTAACTGAATCGATTTTTATATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGACGTTTTATT-GAACAACGGCAGGGAAGGGAAAAAGGCGTATTTACTATGAATTATTTCAACGtTtTtttttTTTgT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................................................................TGTCTTTTTCCGCTTACTGACG..........................................................................	22	1	3561.00	627.00	684.00	591.00	1659.00
..................................................................................TGTCTTTTTCCGCTTACTGACGT.........................................................................	23	1	1685.00	1038.00	126.00	90.00	431.00
........................................................................................................................GCAGGGAAGGGAAAAAGGCGTA....................................	22	1	252.00	227.00	1.00	1.00	23.00
..................................................................................TGTCTTTTTCCGCTTACTGACGTT........................................................................	24	1	116.00	75.00	7.00	5.00	29.00
........................................................................................................................GCAGGGAAGGGAAAAAGGCGT.....................................	21	1	113.00	110.00	1.00	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	59.00	2.00	4.00	20.00	33.00
..................................................................................TGTCTTTTTCCGCTTACTTACG..........................................................................	22	1	52.00	0.00	7.00	37.00	8.00
.......................................................................................................................GGCAGGGAAGGGAAAAAGGCGTA....................................	23	1	49.00	40.00	0.00	0.00	9.00
..................................................................................TGTCTTTTTCCGCTTACTGAC...........................................................................	21	1	33.00	19.00	7.00	7.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGACG..........................................................................	22	1	32.00	0.00	6.00	17.00	9.00
..................................................................................TGTCTTTTTCCGCTTACTGA............................................................................	20	1	32.00	8.00	15.00	8.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGACT..........................................................................	22	1	23.00	2.00	2.00	14.00	5.00
..................................................................................TGTCTTTTTCCGCTTACTGCCG..........................................................................	22	1	22.00	1.00	3.00	13.00	5.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	14.00	2.00	0.00	8.00	4.00
..................................................................................TGTCTTTTTCCGCTTCCTGACG..........................................................................	22	1	13.00	0.00	5.00	4.00	4.00
..................................................................................TGACTTTTTCCGCTTACTGACG..........................................................................	22	1	12.00	1.00	6.00	2.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTGACGTTT.......................................................................	25	1	12.00	11.00	0.00	0.00	1.00
........................................................................................................................GCAGGGAGGGGAAAAAGGCGTA....................................	22	1	11.00	10.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGACA..........................................................................	22	1	10.00	1.00	3.00	2.00	4.00
........................................................................................................................GCAGGGAAGGGAAAAAGGCG......................................	20	1	10.00	10.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTGTCG..........................................................................	22	1	9.00	0.00	2.00	5.00	2.00
........................................................................................................................GCAGGGAAGGGAAAAAGGCGTAT...................................	23	1	9.00	9.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTACTTACGT.........................................................................	23	1	8.00	0.00	2.00	4.00	2.00
..................................................................................TATCTTTTTCCGCTTACTGACG..........................................................................	22	1	8.00	2.00	1.00	1.00	4.00
..................................................................................TGTCTTTTTCCTCTTACTGACG..........................................................................	22	1	8.00	0.00	4.00	3.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGAAG..........................................................................	22	1	7.00	0.00	0.00	3.00	4.00
..................................................................................CGTCTTTTTCCGCTTACTGACG..........................................................................	22	1	7.00	1.00	3.00	0.00	3.00
..................................................................................TGGCTGTTTCCGCTTACTGACG..........................................................................	22	1	7.00	0.00	2.00	3.00	2.00
..................................................................................TGCCTTTTTCCGCTTACTGACG..........................................................................	22	1	7.00	1.00	1.00	2.00	3.00
........................................................................................................................GCAGGGAAGGGAAAAAGGC.......................................	19	1	6.00	6.00	0.00	0.00	0.00
........................................................................................................................GCAGGGAAGGGAAAAAGGCGTAA...................................	23	1	6.00	6.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTTCGCTTACTGACG..........................................................................	22	1	6.00	0.00	0.00	0.00	6.00
..................................................................................TGTCTTTTTCCGTTTACTGACG..........................................................................	22	1	5.00	0.00	1.00	0.00	4.00
..................................................................................TGTCTCTTTCCGCTTACTGACG..........................................................................	22	1	5.00	1.00	0.00	1.00	3.00
..................................................................................TGTCTTTTTCCGCTTACCGACG..........................................................................	22	1	5.00	0.00	3.00	1.00	1.00
.......................................................................................................................GGCAGGGAAGGGAAAAAGGCG......................................	21	1	5.00	5.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTCCACTTACTGACG..........................................................................	22	1	5.00	0.00	1.00	1.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTCACG..........................................................................	22	1	5.00	0.00	2.00	1.00	2.00
..................................................................................TGTCTTTTTCAGCTTACTGACGT.........................................................................	23	1	5.00	3.00	0.00	0.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	5.00	0.00	0.00	1.00	4.00
..................................................................................TGTATTTTTCCGCTTACTGACG..........................................................................	22	1	5.00	0.00	2.00	2.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGATG..........................................................................	22	1	5.00	0.00	3.00	0.00	2.00
..................................................................................TGTCTTTTTCCGATTACTGACG..........................................................................	22	1	5.00	0.00	1.00	3.00	1.00
..................................................................................TGTCTTTTTCCGCTTGCTGACGT.........................................................................	23	1	4.00	2.00	1.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTTGCG..........................................................................	22	1	4.00	0.00	0.00	2.00	2.00
..................................................................................TGTCTTTTTCCGCCTACTGACG..........................................................................	22	1	4.00	1.00	1.00	1.00	1.00
..................................................................................TGTCxTTTTCCGCTTACTGACG..........................................................................	21	1	4.00	2.00	0.00	1.00	1.00
..................................................................................TGCCTTTTTCCGCTTACTGACGT.........................................................................	23	1	4.00	3.00	0.00	0.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGACGC.........................................................................	23	1	4.00	3.00	1.00	0.00	0.00
..................................................................................TGTCTTTTTCCGCTTAATGACG..........................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..................................................................................TGTCTTTTTCTGCTTACTGACG..........................................................................	22	1	4.00	0.00	2.00	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGACGTA........................................................................	24	1	4.00	2.00	0.00	0.00	2.00
........................................................................................................................GCAGGGAAGGGAAAAAGGCGTT....................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TGTCTTTTTACGCTTACTGACG..........................................................................	22	1	3.00	0.00	1.00	1.00	1.00
......................................................................................TTTTTCCGCTTACTGACGT.........................................................................	19	1	3.00	2.00	0.00	0.00	1.00
..................................................................................TCTCTTTTTCCGCTTACTGACG..........................................................................	22	1	3.00	1.00	1.00	0.00	1.00
..................................................................................TGTCTTTTTGCGCTTACTGACG..........................................................................	22	1	3.00	0.00	0.00	1.00	2.00
..................................................................................TGTCTTTCTCCGCTTACTGACG..........................................................................	22	1	3.00	1.00	0.00	2.00	0.00
..................................................................................TGGCTTTTTCCGCTTACTGACGT.........................................................................	23	1	3.00	0.00	2.00	0.00	1.00
.....................................................................................CTTTTTCCGCTTACTGACG..........................................................................	19	1	3.00	0.00	1.00	0.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGACGTC........................................................................	24	1	3.00	2.00	0.00	0.00	1.00
..................................................................................TGACTTTTTCCGCTTACTGACGT.........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTTACT..........................................................................	22	1	3.00	0.00	0.00	2.00	1.00
..................................................................................TGGCTTTTTCCGCTTACTGCCG..........................................................................	22	1	3.00	0.00	0.00	1.00	2.00
..................................................................................TGTCTTTTTCCTCTTACTGACGT.........................................................................	23	1	3.00	1.00	1.00	0.00	1.00
..................................................................................TGTGTTTTTCCGCTTACTGACG..........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................TGTCTTTTTCCGCTTGCTGACG..........................................................................	22	1	3.00	0.00	2.00	0.00	1.00

droGri2

ATTTT----GTGTATAAGTATTGTATGATTAAGCAATC-------T------------------TCAGAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATGTAATCAACAAAC---------CT	Size	Hit Count	Total Norm	V109 Male body
..................................................................................TGTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	185.00	185.00
..................................................................................TGTCTTTTTCCGCTTACTGGCG..........................................................................	22	1	181.00	181.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTA....................................	22	1	42.00	42.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTT........................................................................	24	1	14.00	14.00
........................................................................................................................ACAGGAAGGGGAAAAAGGCGTA....................................	22	1	7.00	7.00
..................................................................................TGTCTTTTTCCGCTTACTGG............................................................................	20	1	5.00	5.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGC.........................................................................	23	1	3.00	3.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGT.....................................	21	1	3.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTGGC...........................................................................	21	1	3.00	3.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGG.........................................................................	23	1	3.00	3.00
........................................................................................................................ACAGGAAGGGGAAAAAGGCGT.....................................	21	1	2.00	2.00
........................................................................................................................ACAGGAAACGGAAAAAGGCGTA....................................	22	1	2.00	2.00
..................................................................................TGTCTTATTCCGCTTACTGGCG..........................................................................	22	1	2.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGA.........................................................................	23	1	2.00	2.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTA....................................	23	1	2.00	2.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTTT.......................................................................	25	1	2.00	2.00
..................................................................................TGTCTTTTTCCGCTTACCGGCG..........................................................................	22	1	2.00	2.00
..................................................................................TGTCTTTTTCCGCTTACCGGCGT.........................................................................	23	1	2.00	2.00
..................................................................................TGTCTTTTTCCGCTTACAGGCGT.........................................................................	23	1	2.00	2.00
..................................................................................TGCCTTTTTCCGCTTACTGGCG..........................................................................	22	1	1.00	1.00
..................................................................................TGTCTTTTTCCTCTTACTGGCG..........................................................................	22	1	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCT..........................................................................	22	1	1.00	1.00
.......................................................................................................................GACAGGAAAGGGAAAAAGGCGTT....................................	23	1	1.00	1.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCG......................................	20	1	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTC........................................................................	24	1	1.00	1.00
........................................................................................................................ACAGGAAATGGAAAAAGGCGTA....................................	22	1	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCGTA........................................................................	24	1	1.00	1.00
..................................................................................TGTCTTTTTACGCTTACTGGCG..........................................................................	22	1	1.00	1.00
........................................................................................................................ACAGGATAGGGAAAAAGGCGTA....................................	22	1	1.00	1.00
........................................................................................................................ACAGGAGAGGGAAAAAGGCGTA....................................	22	1	1.00	1.00
..................................................................................TGTCCTTTTCCGCTTACTGGCG..........................................................................	22	1	1.00	1.00
........................................................................................................................ACTGGAAAGGGAAAAAGGCGTA....................................	22	1	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACCGGCGTT........................................................................	24	1	1.00	1.00
..................................................................................TGTCTTTTTGCGCTTACTGGCGT.........................................................................	23	1	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGACGT.........................................................................	23	1	1.00	1.00
..................................................................................TGTCTTTTTCTGCTTACTGGCGT.........................................................................	23	1	1.00	1.00
..................................................................................TGTCTTTTGCCGCTTACTGGCGT.........................................................................	23	1	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCTT.........................................................................	23	1	1.00	1.00
..................................................................................TGCCTTTTTCCGCTTCCTGGCG..........................................................................	22	1	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACAGGCG..........................................................................	22	1	1.00	1.00
..................................................................................TCTCTTTTTCCGCTTACTGGCGT.........................................................................	23	1	1.00	1.00
..................................................................................TGTCTATTTCCGCTTACTGGCG..........................................................................	22	1	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGCCGT.........................................................................	23	1	1.00	1.00
..................................................................................TGTCTTTTCCCGCTTACTGGCGT.........................................................................	23	1	1.00	1.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTT....................................	22	1	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTCG............................................................................	20	1	1.00	1.00
........................................................................................................................ACAGGAAAGGGAAAAAGGCGTAA...................................	23	1	1.00	1.00
..................................................................................TGTCTTTTTCCGCTTACTGGCAT.........................................................................	23	1	1.00	1.00
..................................................................................TGTCTTCTTCCGCTTACTGGCGT.........................................................................	23	1	1.00	1.00
..................................................................................TGTCTTTCTCCGCTTACTGGCG..........................................................................	22	1	1.00	1.00
........................................................................................................................ACAGGGAAGGGAAAAAGGCGTT....................................	22	1	1.00	1.00
..................................................................................TGTCTTTTTxCGCTTACTGGCGT.........................................................................	22	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image