dme-mir-312- 12- and 20-way alignments

dme-mir-312	chr2R:16471561-16471626 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 16471563-16471584
   star strand at position 16471600-16471622
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:16471546-16471641 -	AATTAAGTTTGAAGCG--ATTT-GGTTCGTCACAAGGGCAATTCTGCATT--TT-TTAACTAGTATTGCACTTGAGACGGCCTGATTAC-------------------TTTAAAACGAATC
droSim1	chr2R:15132834-15132929 -	AATTAAGTTTAAAGCG--TTTT-GGTTCGTCACAAGGGCAATTCTGCATT--TT-TAAACTTGTATTGCACTTGAGACGGCCGAATTAC-------------------TTTAAAAAGAATC
droSec1	super_1:14025748-14025843 -	AATTAAGTTTAAAGCG--TTTT-GGTTCGTCACAAGGGCAATTCTGCATT--TT-TAAACTTGTATTGCACTTGAGACGGCCGAATTAC-------------------TTTAAAAAGAATC
droYak2	chr2R:12724685-12724781 +	AATTGCGTTTGAAGCG--CTTC-GGTTCGTCCCAGGAGCAATTCTGCACTA-TT-AAAGCTAGTATTGCACTTGAGACGGCCGGATTAC-------------------TTTTAAACGAATC
droEre2	scaffold_4845:10616687-10616785 -	AATTAAGTTTGAAGCG--CTTC-GGTTCGTACCAGGAGCAATTCTGCATTTTTTTTAAGCTAGTATTGCACTTGAGACGGCCGGATTAC-------------------TTTTAAACAAAAC
droAna3	scaffold_13266:4132669-4132780 +	AAAAACATCTACAATT--TTCC-GGTGCGTCTCTAGTGCAACTCTTGGTTT-TT-TATACAAGTATTGCACTTGAGACGGCCGAAATATAGTGGATCTAAGCGG----CTATAACCGAAAA
dp4	chr3:8679756-8679826 +	GG-----------------------------------GCAATACTGTGTTGTAT-TTCACCAGTATTGCACACCCACTGGCCTGAAAGT-------------GCCTACTGCTGGGTTCAAA
droPer1	super_4:2566590-2566653 +	TGTACAAGCGGAAGGGTGCATCGAGCTGCTTTGATTT--------------------------------------GTAGGCCGTGGTTC-------------------TTGCAAATACGAA
droWil1	scaffold_180700:3453141-3453235 +	CATAAACTCGAAAATT--TTTTAGGTTCGTTTAGTCTGCAAAT-TGTAAT--AT-ACGAAAATAATTGCACACTTCACGGCCGGAAAAG-------------------TTCAAGTTAAACA
droVir3	scaffold_12875:13669041-13669063 -	AGCTATATTT--------------------------------------------------------------------------------------------------TTCAGGCCGTGTC
droMoj3	scaffold_6496:9090603-9090622 -	GTCTGCAATTTAAGCT--TCTT---------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:17564268-17564296 +	AAGCAAATCTTCAGTT--TTTC-GGCTGTGGT-----------------------------------------------------------------------------------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:16471546-16471641 -	NA	AATTAA-G----TTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATT----TTTTAACTAGTATTGCACTTGAGACGGCCTGAT--------------TACTTTAAAA--CGAAT-------------------------------------------C
droSim1	chr2R:15132834-15132929 -	1	AATTAA-G----TTTAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT----TTTAAACTTGTATTGCACTTGAGACGGCCGAAT--------------TACTTTAAAA--AGAAT-------------------------------------------C
droSec1	super_1:14025748-14025843 -	1	AATTAA-G----TTTAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT----TTTAAACTTGTATTGCACTTGAGACGGCCGAAT--------------TACTTTAAAA--AGAAT-------------------------------------------C
droYak2	chr2R:12724685-12724781 +	1	AATTGC-G----TTTGAAGCGCTTCGGTTCGTCCCAGGAGCAATTCTGCACTA---TTAAAGCTAGTATTGCACTTGAGACGGCCGGAT--------------TACTTTTAAA--CGAAT-------------------------------------------C
droEre2	scaffold_4845:10618147-10618242 -	3	AATTAA-G----TTTGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATT----TTTAAGCTAGTATTGCACTTGAGACGGCCGGAT--------------TACTTTTAAA--CAAAA-------------------------------------------C
droEug1	scf7180000409474:1490038-1490133 +	1	AAATAAAA----TTTCTAGTATTTCGGTTCGCCTTTTGTGCAATTTTAGAGT----C--AATAGAAAATTGCACTTCAGACGGCCGGAT--------------GACTTGAAAT-ACAAAA-------------------------------------------C
droBia1	scf7180000302291:2816211-2816324 +	1	ATATAG-GCATATTTTTGGCGTTTCGGTCCGTCCCAGGAGCAATCCTGTATT-----TCCGACTAGAATTGCACTTGAGACGGCCGGAG--------------TGCTTGAAAA--CAAGG--------AAAGTGCATAG--AA--------------AC----T
droTak1	scf7180000415401:99973-100067 -	1	AAC-AT-A----TTTCTGGTGTTCCGGTCCGTCTCAGGCGCAATTCTGAATT-----TTCACCTAGTATTGCACTTGAGACGGCCGGAA--------------TACTTTAAAT-ACGAAA-------------------------------------------C
droEle1	scf7180000491201:736234-736328 -	1	TACTAA------TTTCTGGTGTTTCGGTACGTCTATGGGGCAATTCTGCGTT----TTCTGGTTAGCATTGCACTTGAGACGGCCGCAA--------------CACTTTGGAA--TAAAA-------------------------------------------A
droRho1	scf7180000780104:82286-82421 -	1	GAACAA-A----TTTCTGGTGTTTCGGCTCGTCTCAAAAGCAATTCTTCGTTTT--TCTTGGCTAGCATTGCACTTGAGACGGCCGCAA--------------TACTTTGGAT-TTAAAACATTTAAGCAAGTTTATTG--AAAAAGTTATTTTTGCAT----T
droFic1	scf7180000454039:1776269-1776366 -	1	AAACCA-A----TTTCGAGTGTTTCGGTCGTCTTGGGTGGCAATACTAAATTAACTTTATGGCTAGCATTGCACTTGAGACGGCCGAAA--------------TGCTTTAAAT--TT--A-------------------------------------------T
droKik1	scf7180000302471:941817-941912 -	3	AGCTCC-G----GCCGTAAAGGTCTGTGCTGTTTGAGGTGCAAATCTGTGGT----TAATAGCCAGAATTGCACTTGAAACGGCCAGAT--------------CAAGGCGGCC--CAAAA-------------------------------------------C
droAna3	scaffold_13266:4132676-4132765 +	1	TCT------------ACAATTTTCCGGTGCGTCTCTAGTGCAACTCTTGGTTT---TTTATACAAGTATTGCACTTGAGACGGCCGAAA--------------TATAGTGGAT--CTAAG-------------------------------------------C
droBip1	scf7180000396427:2575386-2575498 +	1	ATTTAT-G----TCTACAATTTTCGGGGTCATCTCCAGTGCAAATCTTGGTTT---TTCCAACAAGAATTGCACTCGAGACGGCCAGAA--------------TATTGTGGAT--CTATG--------CAGCTACAAG-CCGA--------------AA----G
dp4	chr3:8679756-8679828 +	2	G-------------------------------------GGCAATACTGTGTTGT--ATTTCACCAGTATTGCACACCCACTGGCCTGAA--------------AGTGCCTACT-GCTGGG-------------------TTCA--------------AC----A
droPer1	super_4:2566584-2566654 +	1	ATTAGT-G----T-ACAAGCGGAAGGGTGCATC--------------------------------------------GAGCTGCTTTGATTTGTAGGCCGTGGTTCTTGCAAATAC-GAA-------------------------------------------T
droWil1	Unknown	NA	--------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12875:13669092-13669193 -	2	GC--------------TAGTTTTTCGGCTGTGGTCAGTGTCAATTCTTTTTTTTTATTTTTACAAGTATTGCACTTTTCACGGCCGGAA--------------AAATTGAGAT-TCCATT-------------------TAAA--------------ACACAAG
droMoj3	Unknown	NA	--------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:17564268-17564358 +	1	AAGCAA-A----TCTTCAGTTTTTCGGCTGTGGTTAGTGTCAATTCTTTTT-----ATTTGACAAGCATTGCACTCTTCACGGCCGGAT--------------AAATGAGGGT------C-------------------------------------------T

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AATTAAGTTTGAAGCG--ATTT-GGTTCGTCACAAGGGCAATTCTGCATT--TT-TTAACTAGTATTGCACTTGAGACGGCCTGATTAC-------------------TTTAAAACGAATC

Size

Hit Count

Total Norm

droSim1

AATTAAGTTTAAAGCG--TTTT-GGTTCGTCACAAGGGCAATTCTGCATT--TT-TAAACTTGTATTGCACTTGAGACGGCCGAATTAC-------------------TTTAAAAAGAATC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...............................................................TATTGCACTTGAGACGGCCG......................................	20	2	1124.50	95.00	3.50	279.50	746.50
...............................................................TATTGCACTTGAGACGGCCGA.....................................	21	2	1113.00	726.50	0.00	58.00	328.50
...............................................................TATTGCACTTGAGACGGCCGAAA...................................	23	2	439.00	283.50	0.00	4.00	151.50
...............................................................TATTGCACTTGAGACGGCCGAA....................................	22	2	425.50	269.50	1.00	17.00	138.00
...............................................................TATTGCACTTGAGACGGCCGAAAA..................................	24	2	105.50	78.50	0.00	0.00	27.00
...............................................................TATTGCACTTGAGACGGCCGG.....................................	21	2	72.00	6.00	1.50	7.00	57.50
.....................T-GGTTCGTCACAAGGGCAATTC.............................................................................	22	2	39.50	39.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCC.......................................	19	2	29.50	6.00	0.00	8.00	15.50
...............................................................TATTGCACTTGAGACGGCCGAAT...................................	23	2	25.50	17.50	0.00	1.50	6.50
.....................T-GGTTCGTCACAAGGGCAATTCT............................................................................	23	2	25.00	25.00	0.00	0.00	0.00
.....................T-GGTTCGTCACAAGGGCAATT..............................................................................	21	2	21.50	19.50	0.00	0.50	1.50
...............................................................TATTGCACTTGAGACGGCCGAAC...................................	23	2	21.50	3.50	0.00	1.00	17.00
...............................................................TATTGCACTTGAGACGGCCGCA....................................	22	2	20.50	20.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGCAA...................................	23	2	15.50	15.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAT....................................	22	2	14.50	10.00	0.00	2.50	2.00
...............................................................TATTGCACTTGAGACGGCCGT.....................................	21	2	13.00	8.50	0.00	3.50	1.00
...............................................................TATTGCACTTGAGACGGCCGAAAAA.................................	25	2	11.50	11.00	0.00	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCT......................................	20	2	11.50	0.00	0.00	10.50	1.00
...............................................................TATTGCACTTGAGACGGCCGAC....................................	22	2	11.50	2.00	1.50	2.50	5.50
...............................................................TATTGCACTTGAGACGGCCGC.....................................	21	2	8.50	8.00	0.00	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCGGA....................................	22	2	7.00	7.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAAG...................................	23	2	6.50	3.50	0.00	0.00	3.00
...............................................................TATTTCACTTGAGACGGCCGA.....................................	21	2	6.50	0.00	0.00	0.50	6.00
...............................................................TATTGCACTTGAGACGGCCGATA...................................	23	2	5.50	5.00	0.00	0.50	0.00
...............................................................TATTGCACTTGAGACGGCCGACA...................................	23	2	5.50	5.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAAAT..................................	24	2	4.50	1.50	0.00	0.00	3.00
................................................................ATTGCACTTGAGACGGCCGAA....................................	21	2	4.50	3.50	0.00	0.00	1.00
...............................................................TATTGCACTTGAGACGGC........................................	18	2	4.00	0.50	0.00	1.50	2.00
...............................................................TATTGCACTTGAGACGGCCGAG....................................	22	2	4.00	1.50	0.00	0.00	2.50
................................................................ATTGCACTTGAGACGGCCGA.....................................	20	2	4.00	2.00	0.00	0.00	2.00
...............................................................TATTGCACTTGAGACGGCCC......................................	20	2	4.00	0.00	0.00	2.00	2.00
...............................................................TATTCCACTTGAGACGGCCGA.....................................	21	2	3.50	0.50	0.00	0.00	3.00
...............................................................TATTGCACTTGAGTCGGCCGA.....................................	21	2	3.50	3.50	0.00	0.00	0.00
.....................T-GGTTCGTCACAAGGGCAAT...............................................................................	20	2	3.00	2.50	0.00	0.50	0.00
...............................................................TATTGCACTTGAGACGGCCGGAA...................................	23	2	3.00	3.00	0.00	0.00	0.00
.....................T-GGTTCGTCACAAGGGCAA................................................................................	19	2	2.50	2.00	0.00	0.50	0.00
...............................................................TATTGCACTTGAGACGGCCA......................................	20	2	2.50	0.50	0.00	0.50	1.50
...............................................................TATTGCACTTGAGGCGGCCGA.....................................	21	2	2.50	1.00	0.00	0.00	1.50
...............................................................TATTGCACTTGCGACGGCCGA.....................................	21	2	2.50	2.50	0.00	0.00	0.00
...............................................................TATTGCACTTGCGACGGCCGAAA...................................	23	2	2.50	2.50	0.00	0.00	0.00
.....................T-GGTTCGTCACAAGGGCAATTCTGC..........................................................................	25	2	2.50	2.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGTAA...................................	23	2	2.50	2.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGGCGA.....................................	21	2	2.50	2.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGACGAAA...................................	23	2	2.00	2.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGACGAA....................................	22	2	2.00	2.00	0.00	0.00	0.00
...............................................................TATTGCACTTTAGACGGCCGA.....................................	21	2	2.00	0.50	0.00	0.00	1.50
...............................................................TATTGCACTTGAGACGGCCGTT....................................	22	2	2.00	0.50	0.00	1.00	0.50
...............................................................TATTGCACTTGAGACGGCCGACT...................................	23	2	2.00	0.50	0.00	1.50	0.00
................................................................ATTGCACTTGAGACGGCCGAAA...................................	22	2	2.00	2.00	0.00	0.00	0.00
...............................................................TATTGCACTTGCGACGGCCGAA....................................	22	2	2.00	2.00	0.00	0.00	0.00
.........................TTCGTCACAAGGGCAATTCT............................................................................	20	2	2.00	0.00	0.00	0.00	2.00
...............................................................TATTGCACTTGAGACGGCTG......................................	20	2	2.00	0.00	0.00	0.50	1.50
.....................T-GGTTCGTCACAAGGGCAATTA.............................................................................	22	2	2.00	2.00	0.00	0.00	0.00
.....................T-TGTTCGTCACAAGGGCAATT..............................................................................	21	2	2.00	0.00	0.00	1.00	1.00
...............................................................TATTGCACTTGAGACGGCCGATT...................................	23	2	2.00	2.00	0.00	0.00	0.00
..............................................................CTATTGCACTTGAGACGGCCGA.....................................	22	2	2.00	1.50	0.00	0.50	0.00
...............................................................TATTGCACTTGAGCCGGCCGAAA...................................	23	2	2.00	2.00	0.00	0.00	0.00
...............................................................TAGTGCACTTGAGACGGCCGA.....................................	21	2	2.00	2.00	0.00	0.00	0.00
...............................................................TATTGCACTTGGGACGGCCGA.....................................	21	2	2.00	1.50	0.00	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCGTA....................................	22	2	2.00	2.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCTGA.....................................	21	2	2.00	2.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGAAGGCCGA.....................................	21	2	2.00	2.00	0.00	0.00	0.00
...............................................................TATCGCACTTGAGACGGCCG......................................	20	2	2.00	0.00	0.00	0.00	2.00
...............................................................TATTGAACTTGAGACGGCCGA.....................................	21	2	2.00	2.00	0.00	0.00	0.00
................................................................ATTGCACTTGAGACGGCCG......................................	19	2	1.50	0.00	0.00	1.00	0.50
...............................................................TATTGCACTTGAGACGGCCGAAAC..................................	24	2	1.50	0.00	0.00	0.00	1.50
...............................................................TATTGCACTTGAGGCGGCCG......................................	20	2	1.50	0.00	0.00	0.50	1.00
...............................................................TATTGCACTTGAGACGGCCAA.....................................	21	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACTGCCGAA....................................	22	2	1.50	0.50	0.00	0.50	0.50
...............................................................TACTGCACTTGAGACGGCCGAAA...................................	23	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCAGA.....................................	21	2	1.50	1.00	0.00	0.00	0.50
...............................................................TATTGTACTTGAGACGGCCG......................................	20	2	1.50	0.00	0.00	0.00	1.50
...............................................................TATTGCACTTGACACGGCCGA.....................................	21	2	1.50	0.50	0.00	0.00	1.00
...............................................................TATTGCACTTGAGCCGGCCTA.....................................	21	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGGGACGGCCG......................................	20	2	1.50	0.00	0.00	0.50	1.00
...............................................................TAGTGCACTTGAGACGGCCGAAA...................................	23	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGCCGGCCGA.....................................	21	2	1.50	1.50	0.00	0.00	0.00
.....................T-GGTTCGTCACAAGGGCAATTCA............................................................................	23	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGTCGA.....................................	21	2	1.50	1.50	0.00	0.00	0.00
...............................................................TACTGCACTTGAGACGGCCGAA....................................	22	2	1.50	1.00	0.00	0.00	0.50
...............................................................TATTGCACTTGAGACGGACGA.....................................	21	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTCAGACGGCCGA.....................................	21	2	1.50	0.50	0.00	0.00	1.00
...............................................................TCTTGCACTTGAGACGGCCGAA....................................	22	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAAACA.................................	25	2	1.50	1.00	0.00	0.00	0.50

droSec1

AATTAAGTTTAAAGCG--TTTT-GGTTCGTCACAAGGGCAATTCTGCATT--TT-TAAACTTGTATTGCACTTGAGACGGCCGAATTAC-------------------TTTAAAAAGAATC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...............................................................TATTGCACTTGAGACGGCCGA.....................................	21	2	1244.00	160.50	981.50	102.00
...............................................................TATTGCACTTGAGACGGCCGAA....................................	22	2	653.50	100.00	480.00	73.50
...............................................................TATTGCACTTGAGACGGCCGAAA...................................	23	2	591.50	34.50	503.00	54.00
...............................................................TATTGCACTTGAGACGGCCGAAAA..................................	24	2	186.50	11.00	160.50	15.00
...............................................................TATTGCACTTGAGACGGCCG......................................	20	2	141.00	22.00	109.50	9.50
.....................T-GGTTCGTCACAAGGGCAATT..............................................................................	21	2	98.00	25.50	64.50	8.00
.....................T-GGTTCGTCACAAGGGCAATTCT............................................................................	23	2	97.00	25.00	57.00	15.00
.....................T-GGTTCGTCACAAGGGCAATTC.............................................................................	22	2	94.50	24.00	61.00	9.50
...............................................................TATTGCACTTGAGACGGCCGAAT...................................	23	2	83.50	41.00	40.50	2.00
...............................................................TATTGCACTTGAGACGGCCGAT....................................	22	2	76.50	34.00	37.00	5.50
...............................................................TATTGCACTTGAGACGGCCGAAAAA.................................	25	2	39.00	2.00	33.00	4.00
.....................T-GGTTCGTCACAAGGGCAAT...............................................................................	20	2	38.50	12.50	25.00	1.00
...............................................................TATTGCACTTGAGACGGCCGATA...................................	23	2	31.00	17.00	11.00	3.00
...............................................................TATTGCACTTGAGACGGCCGATT...................................	23	2	17.50	15.50	1.50	0.50
...............................................................TATTGCACTTGAGACGGCCGT.....................................	21	2	16.50	7.00	8.00	1.50
...............................................................TATTGCACTTGAGACGGCCGAAAT..................................	24	2	16.50	10.00	5.50	1.00
.....................T-GGTTCGTCACAAGGGCAATTCTGCA.........................................................................	26	2	11.00	4.50	4.00	2.50
...............................................................TATTGCACTTGAGACGGC........................................	18	2	10.00	0.00	8.00	2.00
.....................T-GGTTCGTCACAAGGGCAA................................................................................	19	2	10.00	5.00	4.50	0.50
...............................................................TATTGCACTTGAGACGGCCGAAG...................................	23	2	9.00	1.00	8.00	0.00
.....................T-GGTTCGTCACAAGGGCAATTT.............................................................................	22	2	9.00	7.00	2.00	0.00
...............................................................TATTGCACTTGAGACGGCC.......................................	19	2	8.50	1.50	5.50	1.50
...............................................................TATTGCACTTGAGACGGCCGATAT..................................	24	2	8.50	7.50	0.50	0.50
...............................................................TATTGCACTTGAGACGGCCGAAC...................................	23	2	7.50	2.00	4.50	1.00
.....................T-GGTTCGTCACAAGGGCAATTCA............................................................................	23	2	7.00	0.50	5.50	1.00
................................................................ATTGCACTTGAGACGGCCGA.....................................	20	2	6.50	1.00	4.50	1.00
................................................................ATTGCACTTGAGACGGCCGAAA...................................	22	2	6.00	0.50	4.00	1.50
...............................................................TATTGCACTTGAGACGGCCGTT....................................	22	2	5.50	2.00	2.50	1.00
...............................................................TATTGCACTTGAGATGGCCGA.....................................	21	2	5.50	0.50	5.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAC....................................	22	2	5.50	1.00	4.50	0.00
...............................................................TATTGCACTTGAGACGGCCGATTT..................................	24	2	5.50	5.00	0.50	0.00
................................................................ATTGCACTTGAGACGGCCGAA....................................	21	2	5.00	1.00	4.00	0.00
...............................................................TATTGCACTTGAGACGGCCGTTT...................................	23	2	5.00	4.50	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCGAATT..................................	24	2	5.00	4.50	0.00	0.50
...............................................................TATTGCACTTGAGATGGCCGAA....................................	22	2	4.50	0.00	4.00	0.50
...............................................................TATTGTACTTGAGACGGCCGA.....................................	21	2	4.50	0.00	4.50	0.00
...............................................................TATTGCACTTGAGGCGGCCGA.....................................	21	2	4.00	0.50	3.50	0.00
...............................................................TATTGCACTTGAGACGGCCGAG....................................	22	2	4.00	1.00	2.50	0.50
.................................................................TTGCACTTGAGACGGCCGA.....................................	19	2	4.00	0.00	4.00	0.00
...............................................................TATTGCATTTGAGACGGCCGAA....................................	22	2	4.00	0.50	3.50	0.00
................................................................ATTGCACTTGAGACGGCCGAAT...................................	22	2	4.00	2.00	1.50	0.50
...............................................................TATTGCACTTGAGCCGGCCGA.....................................	21	2	3.50	1.50	2.00	0.00
...............................................................TATTGCACTTGAGACGGCCGTA....................................	22	2	3.50	2.50	1.00	0.00
...............................................................TATTGCACTTGAGACGGCCGACA...................................	23	2	3.50	0.00	3.00	0.50
...............................................................TATTGCACTTGAGACGGCCTGA....................................	22	2	3.50	0.00	3.50	0.00
...............................................................TATTGCACTTGAGACGGCTGA.....................................	21	2	3.50	2.00	1.50	0.00
...............................................................TATTGCACCTGAGACGGCCGA.....................................	21	2	3.00	0.00	3.00	0.00
...............................................................TATTGCATTTGAGACGGCCGA.....................................	21	2	3.00	0.00	3.00	0.00
.....................T-GGTTCGTCACAAGGGCAATTA.............................................................................	22	2	3.00	1.50	1.50	0.00
...............................................................TATTGCACTTGAGACAGCCGAA....................................	22	2	3.00	0.00	2.50	0.50
...............................................................TATTGCACTTGAGAAGGCCGAAA...................................	23	2	3.00	0.50	2.50	0.00
...............................................................TATTGCACTTGAGAAGGCCGA.....................................	21	2	3.00	0.00	2.50	0.50
...............................................................TCTTGCACTTGAGACGGCCGA.....................................	21	2	2.50	0.00	2.00	0.50
...............................................................TATTGCACTTGAGACGGTT.......................................	19	2	2.50	2.50	0.00	0.00
.....................T-GGTTTGTCACAAGGGCAATT..............................................................................	21	2	2.50	0.00	2.50	0.00
...............................................................TATTGCACTTGAGACGGCCTAAA...................................	23	2	2.50	0.00	1.50	1.00
...............................................................TATTGCACTTGAGACGGCCGAATTT.................................	25	2	2.50	2.50	0.00	0.00
...............................................................TATTGCACTTGAGACGACCGA.....................................	21	2	2.50	0.00	2.00	0.50
.....................T-GGTTCGTCACAAGGGCAATTCTG...........................................................................	24	2	2.50	1.00	1.50	0.00
...............................................................TATTGCACTTGAGACGGTCGA.....................................	21	2	2.50	0.50	2.00	0.00
...............................................................TATTGCATTTGAGACGGCCGAAA...................................	23	2	2.50	0.00	2.50	0.00
...............................................................TATTGCACTTGAGACGGTA.......................................	19	2	2.50	2.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCTGAAA...................................	23	2	2.00	1.50	0.50	0.00
...............................................................TATTGCACTTGAGACGGCCAAAA...................................	23	2	2.00	0.00	1.50	0.50
...............................................................TATTGCACTTGAGACAGCCGA.....................................	21	2	2.00	0.00	2.00	0.00
.....................T-GGTTCGTCACAAGGGCACTT..............................................................................	21	2	2.00	1.50	0.50	0.00
...............................................................TATTGCACTTGAGACGGCGGA.....................................	21	2	2.00	2.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGC.....................................	21	2	2.00	0.50	1.50	0.00
...............................................................TATTCCACTTGAGACGGCCGAA....................................	22	2	2.00	0.50	1.00	0.50
.....................T-GGTTCGTCACAAGGGCAATTCTGC..........................................................................	25	2	2.00	0.00	2.00	0.00
...............................................................TATTGCGCTTGAGACGGCCGAAA...................................	23	2	2.00	0.00	2.00	0.00
...............................................................TATTGCACTTGAGACGGCAGA.....................................	21	2	2.00	1.50	0.50	0.00
.....................T-GGTTCGTCACAAGGGCAATTCC............................................................................	23	2	2.00	0.50	1.50	0.00
...............................................................TATTGCACTTGAGATGGCCGAAA...................................	23	2	2.00	0.00	1.00	1.00
...............................................................TATTGCACTTGGGACGGCCGA.....................................	21	2	2.00	0.00	1.50	0.50
...............................................................TATTGCACTTGAGACTGCCGA.....................................	21	2	2.00	0.50	1.00	0.50
.....................T-GGTTCGTCACAAGGGCAATTAA............................................................................	23	2	2.00	0.00	2.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAACT..................................	24	2	2.00	1.50	0.50	0.00
.................................................................TTGCACTTGAGACGGCCG......................................	18	2	1.50	0.00	1.50	0.00
...............................................................TATTGCACTTGAGACGGCAGAA....................................	22	2	1.50	1.00	0.00	0.50
.....................T-GGTTCGTCACAAGGGCAATA..............................................................................	21	2	1.50	1.00	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCGATATA.................................	25	2	1.50	1.50	0.00	0.00
...............................................................TATTGCACTAGAGACGGCCGA.....................................	21	2	1.50	0.00	1.50	0.00
.....................T-GGTTCGTCACAAGGGCA.................................................................................	18	2	1.50	0.50	1.00	0.00
...............................................................TATTGCACTTGAGACGCCCGAA....................................	22	2	1.50	1.00	0.50	0.00
...............................................................TATTGCACTTGAGACGGCCAAA....................................	22	2	1.50	0.00	1.00	0.50
...............................................................TATTGCACTTGAGACGGCCGATTTAT-------------------.............	26	2	1.50	1.50	0.00	0.00
...............................................................TATTGCACTTGAGCCGGCCGAA....................................	22	2	1.50	0.00	1.00	0.50
.................................................................TTGCACTTGAGACGGCCGAAA...................................	21	2	1.50	0.00	1.50	0.00
...............................................................TATTGCACTTAAGACGGCCGAA....................................	22	2	1.50	0.00	0.50	1.00
...............................................................TATTGCACTTGAGACGGCCGG.....................................	21	2	1.50	0.00	1.50	0.00
.....................T-GGTTCGTCACAAGGGCAATTTT............................................................................	23	2	1.50	1.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAATA..................................	24	2	1.50	1.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAACA..................................	24	2	1.50	0.50	1.00	0.00
...............................................................TATTGCACTTGAGACGGCCGTAT...................................	23	2	1.50	1.50	0.00	0.00
...............................................................TATTTCACTTGAGACGGCCGAAA...................................	23	2	1.50	0.00	1.50	0.00
...............................................................TATTGCACTTGAGACGGCCGATTA..................................	24	2	1.50	1.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGTCGAAA...................................	23	2	1.50	0.00	1.50	0.00
...............................................................TATTGCACTTGAGACGGCCGAATAA.................................	25	2	1.50	0.00	1.50	0.00
...............................................................TATTGCACTTGAGACCGCCGA.....................................	21	2	1.50	0.00	1.00	0.50
...............................................................TATTGCACTTGAGTCGGCCGA.....................................	21	2	1.50	0.00	1.50	0.00

droYak2

AATTGCGTTTGAAGCG--CTTC-GGTTCGTCCCAGGAGCAATTCTGCACTA-TT-AAAGCTAGTATTGCACTTGAGACGGCCGGATTAC-------------------TTTTAAACGAATC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................TATTGCACTTGAGACGGCCGGA....................................	22	2	1156.50	878.00	20.50	205.00	38.50	14.50
...............................................................TATTGCACTTGAGACGGCCGG.....................................	21	2	507.00	430.00	5.50	60.50	10.00	1.00
...............................................................TATTGCACTTGAGACGGCCGGAA...................................	23	2	306.00	277.00	2.00	18.50	7.50	1.00
...............................................................TATTGCACTTGAGACGGCCGGAT...................................	23	2	189.50	88.50	2.00	28.00	3.00	68.00
...............................................................TATTGCACTTGAGACGGCCG......................................	20	2	111.50	91.50	2.00	14.50	1.50	2.00
...............................................................TATTGCACTTGAGACGGCCGGAAA..................................	24	2	106.00	92.00	2.50	8.00	3.00	0.50
...............................................................TATTGCACTTGAGACGGCCGGT....................................	22	2	73.00	43.00	0.50	26.00	3.50	0.00
...............................................................TATTGCACTTGAGACGGCCGGAC...................................	23	2	31.00	7.00	0.00	1.00	1.00	22.00
...............................................................TATTGCACTTGAGACGGCCGGATT..................................	24	2	26.50	12.50	0.50	6.00	0.00	7.50
...............................................................TATTGCACTTGAGACGGCCGGAAT..................................	24	2	22.00	17.50	0.00	4.00	0.50	0.00
...............................................................TATTGCACTTGAGACGGCCGGG....................................	22	2	19.00	15.00	0.00	1.50	1.50	1.00
...............................................................TATTGCACTTGAGACGGCCGGCA...................................	23	2	17.00	16.00	0.00	0.00	1.00	0.00
...............................................................TATTGCACTTGAGACGGCCCG.....................................	21	2	15.50	15.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGC....................................	22	2	14.50	9.50	0.50	2.50	1.50	0.50
...............................................................TATTGCACTTGAGACGGCCGT.....................................	21	2	11.50	3.00	0.00	8.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGAAAA.................................	25	2	11.00	9.50	0.50	1.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGTT...................................	23	2	7.50	4.00	0.50	3.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGAG...................................	23	2	7.00	3.50	0.00	1.50	0.00	2.00
...............................................................TATTGCACTTGAGACGGCCGGATTT.................................	25	2	6.50	1.00	0.00	1.50	0.00	4.00
...............................................................TATTGCACTTGAGACGGCCGGGA...................................	23	2	5.50	5.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGATA..................................	24	2	5.50	5.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGTTT..................................	24	2	5.00	0.00	0.00	4.50	0.50	0.00
...............................................................TATTGCACTTGAGACGGCC.......................................	19	2	5.00	4.00	0.00	0.50	0.50	0.00
...............................................................TATTGCACTTGAGACGGCCGGATG..................................	24	2	5.00	2.00	0.00	0.00	0.00	3.00
...............................................................TATTGCACTTGAGACGGCCGGACA..................................	24	2	4.50	3.00	0.50	0.50	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCGGCT...................................	23	2	3.50	3.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCCGA....................................	22	2	3.50	3.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACAGCCGGA....................................	22	2	3.50	3.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGTA...................................	23	2	3.00	1.00	0.00	2.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGGCGG.....................................	21	2	3.00	3.00	0.00	0.00	0.00	0.00
................................................................ATTGCACTTGAGACGGCCGGA....................................	21	2	3.00	2.00	0.00	1.00	0.00	0.00
...............................................................TATTGCACTTGCGACGGCCGGA....................................	22	2	3.00	2.50	0.00	0.00	0.50	0.00
...............................................................TATTGCACTTGAGAAGGCCGGA....................................	22	2	3.00	3.00	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGGCGGA....................................	22	2	3.00	3.00	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGACT..................................	24	2	3.00	1.00	0.00	0.50	0.00	1.50
...............................................................TATCGCACTTGAGACGGCCGGA....................................	22	2	2.50	2.00	0.00	0.50	0.00	0.00
...............................................................TATTGCACTTGAGCCGGCCGGA....................................	22	2	2.50	2.00	0.00	0.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGGT...................................	23	2	2.50	2.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGTTT...................................	23	2	2.50	0.00	0.00	2.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGCTT..................................	24	2	2.00	1.50	0.00	0.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCAGA....................................	22	2	2.00	2.00	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACCGCCGGA....................................	22	2	2.00	2.00	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAA....................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGAAC..................................	24	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGACACGGCCGG.....................................	21	2	1.50	1.00	0.00	0.50	0.00	0.00
...............................................................TATTGCACTTGAGATGGCCGGA....................................	22	2	1.50	1.00	0.00	0.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGATTAA-------------------A............	27	2	1.50	0.00	0.00	0.50	0.00	1.00
...............................................................TATTGCACTTGCGACGGCCGG.....................................	21	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGACGG.....................................	21	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACCTGAGACGGCCGGA....................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGTACTTGAGACGGCCGGA....................................	22	2	1.50	1.00	0.00	0.50	0.00	0.00
...............................................................TAGTGCACTTGAGACGGCCGGG....................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGACGGA....................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGATC..................................	24	2	1.50	1.00	0.00	0.00	0.00	0.50
................................................................ATTGCACTTGAGACGGCCGGAT...................................	22	2	1.50	1.00	0.00	0.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGC........................................	18	2	1.50	0.50	0.50	0.50	0.00	0.00
...............................................................TATTGCACTTGAGACGCCCGGA....................................	22	2	1.50	1.00	0.00	0.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCAGGAT...................................	23	2	1.50	1.00	0.00	0.50	0.00	0.00
...............................................................TATTACACTTGAGACGGCCGGA....................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGTCGGA....................................	22	2	1.50	1.00	0.00	0.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAAA...................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCT......................................	20	2	1.50	1.00	0.00	0.00	0.00	0.50
...............................................................TATTGCACTTTAGACGGCCGGA....................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
.....................C-GGTTCGTCCCAGGAGCAATTC.............................................................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGATGGCCGGAA...................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGGCGGCCGGAA...................................	23	2	1.50	1.00	0.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCAGG.....................................	21	2	1.50	1.50	0.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGTCCGG.....................................	21	2	1.50	1.00	0.00	0.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGA.....................................	21	2	1.50	1.00	0.00	0.50	0.00	0.00
...............................................................TATTGCAATTGAGACGGCCGGA....................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00

droEre2

AATTAAGTTTGAAGCG--CTTC-GGTTCGTACCAGGAGCAATTCTGCATTTTTTTTAAGCTAGTATTGCACTTGAGACGGCCGGATTAC-------------------TTTTAAACAAAAC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...............................................................TATTGCACTTGAGACGGCCGGA....................................	22	2	192.00	123.50	8.00	0.00	60.50
...............................................................TATTGCACTTGAGACGGCCGG.....................................	21	2	78.50	40.50	4.50	0.00	33.50
...............................................................TATTGCACTTGAGACGGCCGGAA...................................	23	2	38.00	34.50	0.00	0.50	3.00
...............................................................TATTGCACTTGAGACGGCCG......................................	20	2	34.50	8.00	4.00	0.00	22.50
...............................................................TATTGCACTTGAGACGGCCGGT....................................	22	2	22.50	3.00	3.50	0.00	16.00
...............................................................TATTGCACTTGAGACGGCCGGAT...................................	23	2	19.00	7.50	2.50	0.00	9.00
...............................................................TATTGCACTTGAGACGGCCGGAAA..................................	24	2	15.00	14.50	0.00	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCGGTT...................................	23	2	8.50	0.00	0.50	0.00	8.00
...............................................................TATTGCACTTGAGACGGCCGT.....................................	21	2	8.00	0.50	1.50	0.00	6.00
...............................................................TATTGCACTTGAGACGGCCGGTTT..................................	24	2	5.00	0.00	0.00	0.00	5.00
...............................................................TATTGCACTTGAGACGGCCCGA....................................	22	2	4.50	4.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCC.......................................	19	2	4.50	0.50	0.00	0.00	4.00
...............................................................TATTGCACTTGAGACGGCCGTTT...................................	23	2	4.00	0.00	0.00	0.00	4.00
...............................................................TATTGCACTTGAGACGGCCCG.....................................	21	2	3.50	3.50	0.00	0.00	0.00
...............................................................TATTGCACTTGATACGGCCGGA....................................	22	2	3.00	2.00	0.50	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCT......................................	20	2	2.50	0.00	0.50	0.00	2.00
...............................................................TATTGCACTTGAGACGGCCTGA....................................	22	2	2.50	1.50	0.00	0.00	1.00
...............................................................TATTGCACTTGAGACGGCCGGATA..................................	24	2	2.00	0.50	0.00	0.00	1.50
...............................................................TATTGCCCTTGAGACGGCCGGA....................................	22	2	2.00	1.00	0.50	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCGGTA...................................	23	2	2.00	0.00	0.50	0.00	1.50
...............................................................TATTGCACTTGAGACGGCCGGG....................................	22	2	2.00	2.00	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGTT....................................	22	2	2.00	0.00	0.50	0.00	1.50
...............................................................TATTGCACTTGAGACTGCCGG.....................................	21	2	1.50	1.00	0.00	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCGGATT..................................	24	2	1.50	0.50	0.00	0.00	1.00
...............................................................TATTGCACTTGAGACGGCCGGCA...................................	23	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGTG...................................	23	2	1.50	0.00	0.00	0.00	1.50
...............................................................TATTGCACTTGAGACTGCCGGA....................................	22	2	1.50	0.50	0.00	0.00	1.00
...............................................................TATTGCACTTGAGACGGCCGGGA...................................	23	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGGC....................................	22	2	1.50	1.00	0.50	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGA.....................................	21	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGAA....................................	22	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGATACGGCCGGAA...................................	23	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACGGCCGTA....................................	22	2	1.50	1.00	0.00	0.00	0.50
...............................................................TATTGCACTTGAGACGGCCGGAAT..................................	24	2	1.50	1.50	0.00	0.00	0.00
...............................................................TATTGCACTTGAGACCGCCGGA....................................	22	2	1.50	1.00	0.00	0.00	0.50

droAna3

AAAAACATCTACAATT--TTCC-GGTGCGTCTCTAGTGCAACTCTTGGTTT-TT-TATACAAGTATTGCACTTGAGACGGCCGAAATATAGTGGATCTAAGCGG----CTATAACCGAAAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............................................................TATTGCACTTGAGACGGCCGA.....................................	21	2	1519.50	194.00	10.00	24.00	1291.50
...............................................................TATTGCACTTGAGACGGCCGAAA...................................	23	2	687.50	53.00	4.00	6.50	624.00
.....................C-GGTGCGTCTCTAGTGCAACT..............................................................................	21	2	570.00	3.50	1.00	0.50	565.00
...............................................................TATTGCACTTGAGACGGCCGAA....................................	22	2	507.00	131.00	3.00	13.00	360.00
...............................................................TATTGCACTTGAGACGGCCGAAAA..................................	24	2	380.50	10.50	0.00	3.00	367.00
...............................................................TATTGCACTTGAGACGGCCG......................................	20	2	330.50	72.50	4.50	7.50	246.00
...............................................................TATTGCACTTGAGACGGCCGAAAAA.................................	25	2	69.00	1.50	0.50	0.00	67.00
...............................................................TATTGCACTTGAGACGGCCGAAT...................................	23	2	51.00	21.00	0.00	2.50	27.50
...............................................................TATTGCACTTGAGACGGCCCA.....................................	21	2	34.00	0.00	0.00	0.00	34.00
...............................................................TATTGCACTTGAGACGGCCGAT....................................	22	2	32.50	15.00	1.00	1.50	15.00
...............................................................TATTGCACTTGAGACGGCCGCAA...................................	23	2	29.00	0.00	0.00	0.00	29.00
...............................................................TATTGCACTTGAGACGGCCGCA....................................	22	2	28.50	0.50	0.00	0.50	27.50
...............................................................TATTGCACTTGAGACGGCCGT.....................................	21	2	24.50	9.50	1.50	1.00	12.50
...............................................................TATTGCACTTGAGACGGCCGC.....................................	21	2	23.50	0.00	0.00	0.50	23.00
...............................................................TATTGCACTTGAGACGGCCGAAAAAA................................	26	2	22.00	0.50	0.00	0.00	21.50
...............................................................TATTGCACTTTAGACGGCCGA.....................................	21	2	21.50	1.50	0.00	0.00	20.00
..............................CTCTAGTGCAGATCTTGGT........................................................................	19	2	21.00	10.00	4.00	6.00	1.00
.....................C-GGTGCGTCTCTAGTGCAACTCT............................................................................	23	2	18.00	12.50	3.50	2.00	0.00
...............................................................TATTGCACTTGAGACGTCCGA.....................................	21	2	17.00	1.50	0.00	0.50	15.00
...............................................................TATTGCACTTGATACGGCCGA.....................................	21	2	17.00	2.00	0.00	0.00	15.00
...............................................................TATTGCACTTGAGACGGCCGG.....................................	21	2	16.50	0.50	0.00	0.50	15.50
...............................................................TATTGCACTTGAGACGGCC.......................................	19	2	16.00	2.00	0.00	0.50	13.50
.....................C-GGTGCGTCTCTAGTGCAAC...............................................................................	20	2	15.50	0.00	0.00	0.00	15.50
...............................................................TATTGCACTTGAGACGGCCGATA...................................	23	2	15.50	4.50	0.50	0.00	10.50
...............................................................TATTGCACTTGAGACGGCCGACA...................................	23	2	15.00	0.00	0.00	0.00	15.00
...............................................................TATTGCACTTGAGACGGCCGGA....................................	22	2	14.50	0.00	0.00	0.50	14.00
...............................................................TATTGCACTTGAGACGGCCGGAA...................................	23	2	13.00	0.00	0.00	0.00	13.00
...............................................................TATTGCACTTGAGACGGCCCAA....................................	22	2	12.00	0.00	0.00	0.00	12.00
...............................................................TATTGCACTTGAGACGGCCGCAAA..................................	24	2	12.00	0.00	0.00	0.00	12.00
.....................C-GGTGCGTCTCTAGTGCAACTC.............................................................................	22	2	11.50	2.50	0.00	1.50	7.50
...............................................................TATTGCACTTGAGACGGCCCAAA...................................	23	2	11.00	0.00	0.00	0.00	11.00
.....................C-GGTGCGTCTCTAGTGCCACT..............................................................................	21	2	11.00	0.00	0.00	0.00	11.00
...............................................................TATTGCACTTGAGACGGCCGACAA..................................	24	2	10.50	0.00	0.00	0.00	10.50
...............................................................TATTGCACTTGAGACGGCCGATT...................................	23	2	10.00	8.00	0.50	0.50	1.00
...............................................................TATTGCACTTGAGACTGCCGA.....................................	21	2	10.00	1.00	0.00	0.50	8.50
...............................................................TATTGCACTTGAGACGGCCGAAAT..................................	24	2	9.50	2.00	0.00	0.50	7.00
.....................C-GGTGCGTCTCTAGTTCAACT..............................................................................	21	2	9.00	0.00	0.00	0.00	9.00
...............................................................TATTGCACTTGAGACGGCCGAAC...................................	23	2	9.00	1.00	0.00	0.00	8.00
...............................................................TATTGCACTTGAGACGGCCGAAG...................................	23	2	9.00	0.50	0.00	0.50	8.00
...............................................................TATTGCACTTGAGACGGCCTA.....................................	21	2	8.00	0.50	0.00	0.00	7.50
...............................................................TATTGCACTTGCGACGGCCGA.....................................	21	2	7.50	1.00	0.00	0.00	6.50
...............................................................TATTGCACTTGAGACGGCCGAG....................................	22	2	7.50	2.00	0.50	0.50	4.50
...............................................................TATTGCACTTGAGACTGCCGAAA...................................	23	2	7.00	0.00	0.00	0.00	7.00
...............................................................TATTGCACTTGAGACGGCCGAAAC..................................	24	2	7.00	0.50	0.50	0.00	6.00
...............................................................TATTGCACTTGAGACCGCCGA.....................................	21	2	7.00	0.50	0.00	0.00	6.50
...............................................................TATTGCACTTGAGACGGCCGGAAA..................................	24	2	7.00	0.00	0.00	0.00	7.00
...............................................................TATTGCACTTGATACGGCCGAAA...................................	23	2	6.50	0.00	0.00	0.00	6.50
...............................................................TATTGCACTTGAGACGGCCGAAAAAAA...............................	27	2	6.50	0.00	0.50	0.00	6.00
................................................................ATTGCACTTGAGACGGCCGA.....................................	20	2	6.50	1.50	0.00	0.50	4.50
...............................................................TATTGCACTTTAGACGGCCGAAAA..................................	24	2	6.00	0.00	0.00	0.00	6.00
...............................................................TATTGCACTTGAGACTGCCGAA....................................	22	2	6.00	1.00	0.00	0.00	5.00
...............................................................TATTGCACTTGAGACGTCCGAAA...................................	23	2	6.00	0.00	0.00	0.00	6.00
.....................C-GGTGCGTCTCTACTGCAACT..............................................................................	21	2	6.00	0.00	0.00	0.00	6.00
.....................C-GGGGCGTCTCTAGTGCAACT..............................................................................	21	2	6.00	0.00	0.00	0.50	5.50
...............................TCTAGTGCAGATCTTGGT........................................................................	18	2	6.00	1.50	3.00	1.50	0.00
.....................C-GGTGCGTCTCTATTGCAACT..............................................................................	21	2	5.50	0.00	0.00	0.00	5.50
...............................................................TATTGCACTTCAGACGGCCGA.....................................	21	2	5.50	0.00	0.00	0.00	5.50
.....................C-GGTGCGTCTCTAGCGCAACT..............................................................................	21	2	5.50	0.00	0.00	0.00	5.50
...............................................................TATTGCACTTGAGACGGCCGAC....................................	22	2	5.50	0.00	0.00	0.00	5.50
...............................................................TATTGCACTTGAGACGGCCT......................................	20	2	5.50	2.00	0.50	0.00	3.00
...............................................................TATTTCACTTGAGACGGCCGA.....................................	21	2	5.00	1.00	0.00	0.00	4.00
...............................................................TATTGCACTTGCGACGGCCGAAA...................................	23	2	5.00	0.50	0.00	0.00	4.50
...............................................................TATTGCACTTGAGACGGCCGTAA...................................	23	2	5.00	1.00	0.00	0.00	4.00
...............................................................TATTGCACTTGACACGGCCGA.....................................	21	2	4.50	1.00	0.00	0.00	3.50
...............................................................TATTGCACTTGAGACGGCCCAAAA..................................	24	2	4.50	0.00	0.00	0.00	4.50
...............................................................TATTGCACTTGAGACGTCCG......................................	20	2	4.50	0.50	0.00	0.00	4.00
...............................................................TATTGCACTTGATACGGCCGAA....................................	22	2	4.50	0.00	0.00	0.00	4.50
...............................................................TATTGCACTTGAGACGGACGA.....................................	21	2	4.50	2.00	0.00	0.00	2.50
...............................................................TATTGCACTTGAGACGGGCGA.....................................	21	2	4.50	0.00	0.00	0.00	4.50
...............................................................TATTGCACTTTAGACGGCCGAAA...................................	23	2	4.50	0.00	0.00	0.00	4.50
...............................................................TATTGCACTTGAGACAGCCGA.....................................	21	2	4.00	0.00	0.00	0.00	4.00
...............................................................TATTGCACTTGAGACGGCCGAAACA.................................	25	2	4.00	0.00	0.00	0.00	4.00
...............................................................TATTGCACTTGATACGGCCGAAAA..................................	24	2	4.00	0.00	0.00	0.00	4.00
...............................................................TATTGCACTTGAGACGACCGA.....................................	21	2	4.00	0.00	0.00	0.00	4.00
.....................C-GGTGCGTCTCTCGTGCAACT..............................................................................	21	2	4.00	0.00	0.00	0.00	4.00
...............................................................TATTGCACTTGATACGGCCG......................................	20	2	4.00	0.50	0.00	0.00	3.50
...............................................................CATTGCACTTGAGACGGCCGA.....................................	21	2	4.00	1.00	0.00	0.00	3.00
...............................................................TAGTGCACTTGAGACGGCCGA.....................................	21	2	4.00	0.00	0.00	0.50	3.50
...............................................................TATTGCACTTGAGACGGCCTAAA...................................	23	2	4.00	0.00	0.00	0.00	4.00
...............................................................TATTGCACTTGAGCCGGCCGA.....................................	21	2	4.00	0.00	0.00	0.00	4.00
...............................................................TATTGCGCTTGAGACGGCCGA.....................................	21	2	3.50	0.50	0.00	0.00	3.00
...............................................................TATTGCACTTTAGACGGCCGAA....................................	22	2	3.50	0.50	0.00	0.00	3.00
...............................................................TATTGCACTTGCGACGGCCGAA....................................	22	2	3.50	1.00	0.00	0.00	2.50
...............................................................TATTGCACTTGAGACTGCCG......................................	20	2	3.50	0.00	0.00	0.00	3.50
...............................................................TATTGCACTTGAGACGGCCGTAAA..................................	24	2	3.50	0.00	0.00	0.00	3.50
.....................C-GGCGCGTCTCTAGTGCAACT..............................................................................	21	2	3.50	0.00	0.00	0.00	3.50
...............................................................TATTGCACTTGAGACGTCCGAA....................................	22	2	3.50	0.50	0.00	0.00	3.00
...............................................................TATTGCACTTGATACGTCCGAAA...................................	23	2	3.50	0.00	0.00	0.00	3.50
...............................................................TATTGCACTTGAGACGCCCGA.....................................	21	2	3.50	0.00	0.00	0.00	3.50
...............................................................TATTGCACTTGAGACGGCCGAACA..................................	24	2	3.50	0.00	0.00	0.00	3.50
.....................C-GGTGCGTCTCTAGTGCAACTCTA...........................................................................	24	2	3.50	3.00	0.00	0.50	0.00
...............................................................TATTGCACTTGAGACGGCCTAA....................................	22	2	3.50	0.00	0.00	0.00	3.50
...............................................................TATTTCACTTGAGACGGCCGAAA...................................	23	2	3.00	0.00	0.00	0.00	3.00
.....................C-GGTGCGTCTCTAGTGCAA................................................................................	19	2	3.00	0.00	0.00	0.00	3.00
...............................................................TATTGCACTTGAGACGGCCGTA....................................	22	2	3.00	0.00	0.00	0.50	2.50
...............................................................TATTGCACTTGAGACGCCCGAAA...................................	23	2	3.00	0.00	0.00	0.00	3.00
...............................................................TATTGCACTTGAGACTGCCGAAAA..................................	24	2	3.00	0.50	0.00	0.00	2.50
...............................................................TATTGCACTTGACACGGCCGAAA...................................	23	2	3.00	0.00	0.00	0.00	3.00
...............................................................TATTGCACTTGAGACGGCCGATAA..................................	24	2	3.00	0.00	0.00	0.00	3.00
...............................................................TATTGCACTCGAGACGGCCGA.....................................	21	2	3.00	0.50	0.00	0.00	2.50
...............................................................TATTGCACTTGAGACGGCCGAAAAT.................................	25	2	3.00	0.50	0.00	0.00	2.50

dp4

GG-----------------------------------GCAATACTGTGTTGTAT-TTCACCAGTATTGCACACCCACTGGCCTGAAAGT-------------GCCTACTGCTGGGTTCAAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...............................................................TATTGCACACCCACTGGCCTGA....................................	22	2	519.50	103.50	371.00	40.00	5.00
...............................................................TATTGCACACCCACTGGCCTG.....................................	21	2	275.00	55.00	50.00	29.50	140.50
...............................................................TATTGCACACCCACTGGCCTGT....................................	22	2	37.50	24.00	5.50	6.00	2.00
...............................................................TATTGCACACCCACTGGCCTGAA...................................	23	2	29.50	3.00	25.00	1.50	0.00
...............................................................TATTGCACACCCACTGGCCT......................................	20	2	15.00	6.00	5.00	2.50	1.50
...............................................................TATTGCACACCCACTGGCCTGTC...................................	23	2	7.50	6.00	0.00	1.00	0.50
...............................................................TATTGCACACCCACTGGCCTGTT...................................	23	2	4.00	2.00	0.00	1.50	0.50
...............................................................TATTGCACACCCACTGGCCTGC....................................	22	2	3.50	0.50	2.50	0.00	0.50
...............................................................TATTGCACACCCACTGGCCTGAAA..................................	24	2	3.50	0.00	3.50	0.00	0.00
...............................................................TATTGCACACCCCCTGGCCTGA....................................	22	2	2.50	0.00	2.50	0.00	0.00
...............................................................TATTGCACACCCTCTGGCCTGA....................................	22	2	2.50	0.00	2.50	0.00	0.00
...............................................................TATTGCACACCCACTGGCC.......................................	19	2	2.50	0.00	0.50	0.50	1.50
...............................................................TATTGCACACCCACTGGCCTT.....................................	21	2	2.50	1.00	0.50	0.00	1.00
...............................................................TATTGCACACCCAATGGCCTGA....................................	22	2	2.00	0.00	2.00	0.00	0.00
...............................................................TATTGCACACCCACTAGCCTGA....................................	22	2	2.00	0.00	2.00	0.00	0.00
...............................................................TATTGCACACCCACTGGCCTGAT...................................	23	2	2.00	1.00	0.00	1.00	0.00
...............................................................TATTGCACACCCACTTGCCTGA....................................	22	2	2.00	1.50	0.50	0.00	0.00
...............................................................TATTGCACACCCACTGGCCTAA....................................	22	2	1.50	0.00	0.50	1.00	0.00
...............................................................TACTGCACACCCACTGGCCTGA....................................	22	2	1.50	0.00	1.00	0.50	0.00
...............................................................TATTGCACACCCACTGGCCCGA....................................	22	2	1.50	0.50	1.00	0.00	0.00
...............................................................TATTGCACACCCACTGGCCTGAG...................................	23	2	1.50	1.00	0.50	0.00	0.00
..............................................................GTATTGCACACCCACTGGCC.......................................	20	2	1.50	1.00	0.00	0.50	0.00
...............................................................TATTGCACACCCACTGGCATGA....................................	22	2	1.50	1.00	0.50	0.00	0.00
...............................................................TATTGCACACTCACTGGCCTGA....................................	22	2	1.50	0.00	1.50	0.00	0.00

droPer1

TGTACAAGCGGAAGGGTGCATCGAGCTGCTTTGATTT--------------------------------------GTAGGCCGTGGTTC-------------------TTGCAAATACGAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.............................................................................AGGCCGTGGTTC-------------------TTGCAAATA....	21	2	1.50	1.00	0.50	0.00	0.00	0.00
.............................................................................AGGCCGTGGTTC-------------------TTGCAAAT.....	20	2	1.50	1.00	0.50	0.00	0.00	0.00
.............................................................................AGGCCGTGGTTC-------------------TTGCAAATACG..	23	2	0.50	0.00	0.50	0.00	0.00	0.00
.............................................................................AGGCCGTGGTTC-------------------TTGCAAATACGT.	24	2	0.50	0.50	0.00	0.00	0.00	0.00

droWil1

CATAAACTCGAAAATT--TTTTAGGTTCGTTTAGTCTGCAAAT-TGTAAT--AT-ACGAAAATAATTGCACACTTCACGGCCGGAAAAG-------------------TTCAAGTTAAACA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................................AATTGCACACTTCACGGCCGGA....................................	22	2	8130.00	263.00	7833.00	29.50	4.50
...............................................................AATTGCACACTTCACGGCCGG.....................................	21	2	4235.00	304.00	3893.50	37.50	0.00
...............................................................AATTGCACACTTCACGGCCGGAA...................................	23	2	3225.50	92.50	3112.00	21.00	0.00
...............................................................AATTGCACACTTCACGGCCGGAAA..................................	24	2	1702.50	21.50	1679.50	1.50	0.00
................................................................ATTGCACACTTCACGGCCGGAA...................................	22	2	809.00	25.50	777.50	6.00	0.00
................................................................ATTGCACACTTCACGGCCGGA....................................	21	2	638.50	38.00	595.50	4.50	0.50
...............................................................AATTGCACACTTCACGGCCG......................................	20	2	610.00	74.00	514.00	6.50	15.50
................................................................ATTGCACACTTCACGGCCGGAAA..................................	23	2	429.50	5.00	423.50	0.50	0.50
...............................................................AATTGCACACTTCACGGCCGGT....................................	22	2	351.50	25.00	324.50	1.00	1.00
......................AGGTTCGTTTAGTCTGCAAAT-TG...........................................................................	23	2	343.00	19.00	316.50	1.00	6.50
...............................................................AATTGCACACTTCACGGCCGGAAAA.................................	25	2	184.50	1.50	182.00	1.00	0.00
...............................................................AATTGCACACTTCACGGCCGGAT...................................	23	2	162.50	9.50	150.50	1.00	1.50
......................AGGTTCGTTTAGTCTGCAAAT-TGT..........................................................................	24	2	131.50	9.00	122.50	0.00	0.00
......................AGGTTCGTTTAGTCTGCAAAT-TGTAA........................................................................	26	2	93.50	0.00	93.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGGAAT..................................	24	2	82.00	7.00	75.00	0.00	0.00
......................AGGTTCGTTTAGTCTGCAAAT-TGTAAA--.....................................................................	27	2	71.00	0.00	71.00	0.00	0.00
......................AGGTTCGTTTAGTCTGCAAAT-TGA..........................................................................	24	2	68.00	0.50	67.50	0.00	0.00
................................................................ATTGCACACTTCACGGCCGG.....................................	20	2	67.00	11.50	55.00	0.50	0.00
...............................................................AATTGCACACTTCACGGCCGGAG...................................	23	2	54.00	7.50	45.50	1.00	0.00
......................AGGTTCGTTTAGTCTGCAAAT-T............................................................................	22	2	52.50	5.50	40.50	1.50	5.00
................................................................ATTGCACACTTCACGGCCGGAAAA.................................	24	2	45.00	1.50	43.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGGAAG..................................	24	2	34.00	3.50	29.50	1.00	0.00
......................AGGTTCGTTTAGTCTGCAAAT-TGTA.........................................................................	25	2	33.00	0.50	31.50	0.00	1.00
.................................................................TTGCACACTTCACGGCCGGAAA..................................	22	2	29.00	1.00	28.00	0.00	0.00
...............................................................AATTGCACACTTCACGTCCGGA....................................	22	2	26.50	0.50	26.00	0.00	0.00
.....................TAGGTTCGTTTAGTCTGCAAAT-TG...........................................................................	24	2	26.00	1.00	25.00	0.00	0.00
................................................................ATTGCACACTTCACGGCCGGAAT..................................	23	2	24.50	3.00	21.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGGAAAAA-------------------.............	26	2	23.50	0.00	23.50	0.00	0.00
.................................................................TTGCACACTTCACGGCCGGAA...................................	21	2	23.50	1.00	22.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGT.....................................	21	2	22.50	9.50	13.00	0.00	0.00
...............................................................AATTGCACACTTCACTGCCGGA....................................	22	2	22.50	0.00	22.00	0.50	0.00
...............................................................AATTGCACACTTCACGGCCGGAC...................................	23	2	20.00	0.50	18.50	0.50	0.50
...............................................................AATTGCACACTTCACGGCCGGTA...................................	23	2	19.00	2.50	16.00	0.50	0.00
......................AGGTTCGTTTAGTCTGCAAAT-TGAA.........................................................................	25	2	18.00	0.00	17.00	0.00	1.00
...............................................................AATTGCACACTTCACGGCCTGA....................................	22	2	17.50	0.00	17.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGGC....................................	22	2	17.00	0.00	17.00	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGGAAAT.................................	25	2	17.00	0.50	16.50	0.00	0.00
...............................................................AATTGCACACTTCCCGGCCGG.....................................	21	2	16.50	0.00	16.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGTA....................................	22	2	16.00	0.00	16.00	0.00	0.00
...............................................................AATTTCACACTTCACGGCCGGA....................................	22	2	15.00	0.50	14.50	0.00	0.00
...............................................................AATTGCACACTTCACGTCCGG.....................................	21	2	14.50	0.50	14.00	0.00	0.00
...............................................................AATTGCACACTTCACGGACGGA....................................	22	2	14.00	0.00	14.00	0.00	0.00
...............................................................AATTGCACACTTCACGCCCGG.....................................	21	2	14.00	2.00	12.00	0.00	0.00
.................................................................TTGCACACTTCACGGCCGGA....................................	20	2	14.00	2.00	11.50	0.50	0.00
...............................................................AATTGCACACTTCACGGCCGGATA..................................	24	2	13.50	0.50	13.00	0.00	0.00
................................................................ATTGCACACTTCACGGCCGGAT...................................	22	2	13.50	1.50	11.50	0.00	0.50
...............................................................AATTGCACACTTCACGGCCGGTT...................................	23	2	13.00	1.00	11.50	0.00	0.50
...............................................................AATTGCACACTTCACGCCCGGA....................................	22	2	13.00	0.50	12.50	0.00	0.00
...............................................................AATTGCACACTTCACTGCCGG.....................................	21	2	12.50	0.00	12.00	0.50	0.00
...............................................................AATTGCACACTTCACGGCC.......................................	19	2	12.00	0.00	10.50	0.00	1.50
.....................TAGGTTCGTTTAGTCTGCAAAT-T............................................................................	23	2	12.00	1.50	10.00	0.50	0.00
.....................TAGGTTCGTTTAGTCTGCAAAT-TGA..........................................................................	25	2	12.00	0.50	11.50	0.00	0.00
...............................................................AATTGCACACTTCACAGCCGGA....................................	22	2	11.50	0.50	11.00	0.00	0.00
...............................................................AATTGCACACTTCCCGGCCGGA....................................	22	2	11.50	0.00	11.50	0.00	0.00
................................................................ATTGCACACTTCACGGCCGGAC...................................	22	2	11.00	0.00	11.00	0.00	0.00
...............................................................AATTGCACACCTCACGGCCGGA....................................	22	2	11.00	0.00	11.00	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGGAAAAA-------------------A............	27	2	11.00	0.00	11.00	0.00	0.00
...............................................................AATTGCGCACTTCACGGCCGGA....................................	22	2	10.50	0.00	10.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCTG.....................................	21	2	10.50	0.00	10.50	0.00	0.00
...............................................................AATTGCACACTTCACGGC........................................	18	2	10.50	1.00	9.50	0.00	0.00
...............................................................AATTGCACACTTCACGTCCGGAA...................................	23	2	10.00	0.00	10.00	0.00	0.00
...............................................................AATTGCACACTTCACGGCAGGA....................................	22	2	9.50	0.00	9.50	0.00	0.00
...............................................................AATCGCACACTTCACGGCCGGA....................................	22	2	9.50	0.00	9.50	0.00	0.00
......................AGGTTCGTTTAGTCTGCAAAT-.............................................................................	21	2	9.50	1.00	8.50	0.00	0.00
...............................................................AATTTCACACTTCACGGCCGG.....................................	21	2	9.50	0.00	9.50	0.00	0.00
...............................................................AATTGCACACTTCACGGACGG.....................................	21	2	9.50	0.00	9.50	0.00	0.00
...............................................................AATTGCACACTTCCCGGCCGGAA...................................	23	2	9.00	0.00	9.00	0.00	0.00
...............................................................GATTGCACACTTCACGGCCGGA....................................	22	2	9.00	0.00	9.00	0.00	0.00
...............................................................AATTGCACACTTCGCGGCCGGA....................................	22	2	9.00	1.00	8.00	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGGACA..................................	24	2	8.00	0.50	6.50	0.00	1.00
...............................................................AATTTCACACTTCACGGCCGGAA...................................	23	2	8.00	0.00	8.00	0.00	0.00
......................AGGTTCGTTTAGTCTGCAAAT-TGAAA........................................................................	26	2	8.00	0.00	7.50	0.00	0.50
...............................................................AATTGCACACTTCACGGCTGGA....................................	22	2	8.00	0.50	7.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCCG.....................................	21	2	8.00	0.50	7.50	0.00	0.00
................................................................ATTGCACACTTCACGGCCGGAAG..................................	23	2	8.00	0.50	7.50	0.00	0.00
...............................................................AATTGCACACTTCACTGCCGGAA...................................	23	2	8.00	0.00	8.00	0.00	0.00
...............................................................AATTGCACACTTCACGGCCAGA....................................	22	2	8.00	1.00	6.50	0.50	0.00
...............................................................AACTGCACACTTCACGGCCGGAA...................................	23	2	7.50	0.50	7.00	0.00	0.00
................................................................ATTGCACACTTCACGGCCG......................................	19	2	7.50	0.50	7.00	0.00	0.00
...............................................................AATTGCACACTCCACGGCCGGA....................................	22	2	7.50	0.00	7.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCTGAA...................................	23	2	7.50	0.00	7.50	0.00	0.00
...............................................................AATTGCACACTTCACGACCGGA....................................	22	2	7.50	0.00	7.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGGG....................................	22	2	7.00	0.00	6.00	0.00	1.00
...............................................................AATTGCACACTTCACGGTCGGA....................................	22	2	7.00	0.00	6.50	0.50	0.00
...............................................................AATTGCACACTTCACAGCCGG.....................................	21	2	7.00	0.50	6.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGGTAA..................................	24	2	6.50	0.50	6.00	0.00	0.00
...............................................................AATTGCACACCTCACGGCCGG.....................................	21	2	6.50	0.50	6.00	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGA.....................................	21	2	6.50	0.00	6.50	0.00	0.00
................................................................ATTGCACACTTCACGGCCGGAAAAA-------------------.............	25	2	6.50	0.00	6.50	0.00	0.00
...............................................................AATTGCACACTTCACGGACGGAA...................................	23	2	6.50	0.00	6.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCTGGAA...................................	23	2	6.50	0.00	6.50	0.00	0.00
...............................................................AATTGCACCCTTCACGGCCGGA....................................	22	2	6.50	0.00	6.50	0.00	0.00
...............................................................AATTCCACACTTCACGGCCGGA....................................	22	2	6.50	0.00	6.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCAGG.....................................	21	2	6.50	0.50	6.00	0.00	0.00
...............................................................AATTGCCCACTTCACGGCCGGA....................................	22	2	6.50	0.00	6.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCCGGAAC..................................	24	2	6.50	0.00	6.50	0.00	0.00
...............................................................AATTGCACACTTCACGGCAGGAA...................................	23	2	6.50	0.00	6.50	0.00	0.00
...............................................................AATTGCACACTCCACGGCCGG.....................................	21	2	6.00	0.50	5.50	0.00	0.00
...............................................................AATTGAACACTTCACGGCCGG.....................................	21	2	6.00	0.00	6.00	0.00	0.00
...............................................................AATTGCACACTTCACGGCCCGA....................................	22	2	6.00	0.00	6.00	0.00	0.00
...............................................................AATTGTACACTTCACGGCCGGA....................................	22	2	6.00	0.00	6.00	0.00	0.00

droVir3

AGCTATATTT--------------------------------------------------------------------------------------------------TTCAGGCCGTGTC

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3

GTCTGCAATTTAAGCT--TCTT---------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2

AAGCAAATCTTCAGTT--TTTC-GGCTGTGGT-----------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image										None
UNAFold Image										None	None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image																	None		None
UNAFold Image																	None		None