Possible Orthologs for dme-mir-312

droSim1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:15132834-15132929 -	90.78	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC AATTAAGTTTAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATTTTTAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAAAGAATC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .........................................................TATTGCACTTGAGACGGCCG................... 20 2 1124.50 95.00 3.50 279.50 746.50 .........................................................TATTGCACTTGAGACGGCCGA.................. 21 2 1113.00 726.50 0.00 58.00 328.50 .........................................................TATTGCACTTGAGACGGCCGAAA................ 23 2 439.00 283.50 0.00 4.00 151.50 .........................................................TATTGCACTTGAGACGGCCGAA................. 22 2 425.50 269.50 1.00 17.00 138.00 .........................................................TATTGCACTTGAGACGGCCGAAAA............... 24 2 105.50 78.50 0.00 0.00 27.00 .........................................................TATTGCACTTGAGACGGCCGG.................. 21 2 72.00 6.00 1.50 7.00 57.50 ...................TGGTTCGTCACAAGGGCAATTC....................................................... 22 2 39.50 39.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCC.................... 19 2 29.50 6.00 0.00 8.00 15.50 .........................................................TATTGCACTTGAGACGGCCGAAT................ 23 2 25.50 17.50 0.00 1.50 6.50 ...................TGGTTCGTCACAAGGGCAATTCT...................................................... 23 2 25.00 25.00 0.00 0.00 0.00 ...................TGGTTCGTCACAAGGGCAATT........................................................ 21 2 21.50 19.50 0.00 0.50 1.50 .........................................................TATTGCACTTGAGACGGCCGAAC................ 23 2 21.50 3.50 0.00 1.00 17.00 .........................................................TATTGCACTTGAGACGGCCGCA................. 22 2 20.50 20.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGCAA................ 23 2 15.50 15.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGAT................. 22 2 14.50 10.00 0.00 2.50 2.00 .........................................................TATTGCACTTGAGACGGCCGT.................. 21 2 13.00 8.50 0.00 3.50 1.00 .........................................................TATTGCACTTGAGACGGCCGAAAAA.............. 25 2 11.50 11.00 0.00 0.00 0.50 .........................................................TATTGCACTTGAGACGGCCT................... 20 2 11.50 0.00 0.00 10.50 1.00 .........................................................TATTGCACTTGAGACGGCCGAC................. 22 2 11.50 2.00 1.50 2.50 5.50 .........................................................TATTGCACTTGAGACGGCCGC.................. 21 2 8.50 8.00 0.00 0.00 0.50 .........................................................TATTGCACTTGAGACGGCCGGA................. 22 2 7.00 7.00 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGAAG................ 23 2 6.50 3.50 0.00 0.00 3.00 .........................................................TATTTCACTTGAGACGGCCGA.................. 21 2 6.50 0.00 0.00 0.50 6.00 .........................................................TATTGCACTTGAGACGGCCGATA................ 23 2 5.50 5.00 0.00 0.50 0.00 .........................................................TATTGCACTTGAGACGGCCGACA................ 23 2 5.50 5.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGAAAT............... 24 2 4.50 1.50 0.00 0.00 3.00 ..........................................................ATTGCACTTGAGACGGCCGAA................. 21 2 4.50 3.50 0.00 0.00 1.00 .........................................................TATTGCACTTGAGACGGC..................... 18 2 4.00 0.50 0.00 1.50 2.00 .........................................................TATTGCACTTGAGACGGCCGAG................. 22 2 4.00 1.50 0.00 0.00 2.50 ..........................................................ATTGCACTTGAGACGGCCGA.................. 20 2 4.00 2.00 0.00 0.00 2.00 .........................................................TATTGCACTTGAGACGGCCC................... 20 2 4.00 0.00 0.00 2.00 2.00 .........................................................TATTCCACTTGAGACGGCCGA.................. 21 2 3.50 0.50 0.00 0.00 3.00 .........................................................TATTGCACTTGAGTCGGCCGA.................. 21 2 3.50 3.50 0.00 0.00 0.00 ...................TGGTTCGTCACAAGGGCAAT......................................................... 20 2 3.00 2.50 0.00 0.50 0.00 .........................................................TATTGCACTTGAGACGGCCGGAA................ 23 2 3.00 3.00 0.00 0.00 0.00 ...................TGGTTCGTCACAAGGGCAA.......................................................... 19 2 2.50 2.00 0.00 0.50 0.00 .........................................................TATTGCACTTGAGACGGCCA................... 20 2 2.50 0.50 0.00 0.50 1.50 .........................................................TATTGCACTTGAGGCGGCCGA.................. 21 2 2.50 1.00 0.00 0.00 1.50 .........................................................TATTGCACTTGCGACGGCCGA.................. 21 2 2.50 2.50 0.00 0.00 0.00 .........................................................TATTGCACTTGCGACGGCCGAAA................ 23 2 2.50 2.50 0.00 0.00 0.00 ...................TGGTTCGTCACAAGGGCAATTCTGC.................................................... 25 2 2.50 2.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGTAA................ 23 2 2.50 2.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGGCGA.................. 21 2 2.50 2.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGACGAAA................ 23 2 2.00 2.00 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGACGAA................. 22 2 2.00 2.00 0.00 0.00 0.00 .........................................................TATTGCACTTTAGACGGCCGA.................. 21 2 2.00 0.50 0.00 0.00 1.50 .........................................................TATTGCACTTGAGACGGCCGTT................. 22 2 2.00 0.50 0.00 1.00 0.50 .........................................................TATTGCACTTGAGACGGCCGACT................ 23 2 2.00 0.50 0.00 1.50 0.00 ..........................................................ATTGCACTTGAGACGGCCGAAA................ 22 2 2.00 2.00 0.00 0.00 0.00 .........................................................TATTGCACTTGCGACGGCCGAA................. 22 2 2.00 2.00 0.00 0.00 0.00 ......................TTCGTCACAAGGGCAATTCT...................................................... 20 2 2.00 0.00 0.00 0.00 2.00 .........................................................TATTGCACTTGAGACGGCTG................... 20 2 2.00 0.00 0.00 0.50 1.50 ...................TGGTTCGTCACAAGGGCAATTA....................................................... 22 2 2.00 2.00 0.00 0.00 0.00 ...................TTGTTCGTCACAAGGGCAATT........................................................ 21 2 2.00 0.00 0.00 1.00 1.00 .........................................................TATTGCACTTGAGACGGCCGATT................ 23 2 2.00 2.00 0.00 0.00 0.00 ........................................................CTATTGCACTTGAGACGGCCGA.................. 22 2 2.00 1.50 0.00 0.50 0.00 .........................................................TATTGCACTTGAGCCGGCCGAAA................ 23 2 2.00 2.00 0.00 0.00 0.00 .........................................................TAGTGCACTTGAGACGGCCGA.................. 21 2 2.00 2.00 0.00 0.00 0.00 .........................................................TATTGCACTTGGGACGGCCGA.................. 21 2 2.00 1.50 0.00 0.00 0.50 .........................................................TATTGCACTTGAGACGGCCGTA................. 22 2 2.00 2.00 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCTGA.................. 21 2 2.00 2.00 0.00 0.00 0.00 .........................................................TATTGCACTTGAGAAGGCCGA.................. 21 2 2.00 2.00 0.00 0.00 0.00 .........................................................TATCGCACTTGAGACGGCCG................... 20 2 2.00 0.00 0.00 0.00 2.00 .........................................................TATTGAACTTGAGACGGCCGA.................. 21 2 2.00 2.00 0.00 0.00 0.00 ..........................................................ATTGCACTTGAGACGGCCG................... 19 2 1.50 0.00 0.00 1.00 0.50 .........................................................TATTGCACTTGAGACGGCCGAAAC............... 24 2 1.50 0.00 0.00 0.00 1.50 .........................................................TATTGCACTTGAGGCGGCCG................... 20 2 1.50 0.00 0.00 0.50 1.00 .........................................................TATTGCACTTGAGACGGCCAA.................. 21 2 1.50 1.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACTGCCGAA................. 22 2 1.50 0.50 0.00 0.50 0.50 .........................................................TACTGCACTTGAGACGGCCGAAA................ 23 2 1.50 1.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCAGA.................. 21 2 1.50 1.00 0.00 0.00 0.50 .........................................................TATTGTACTTGAGACGGCCG................... 20 2 1.50 0.00 0.00 0.00 1.50 .........................................................TATTGCACTTGACACGGCCGA.................. 21 2 1.50 0.50 0.00 0.00 1.00 .........................................................TATTGCACTTGAGCCGGCCTA.................. 21 2 1.50 1.50 0.00 0.00 0.00 .........................................................TATTGCACTTGGGACGGCCG................... 20 2 1.50 0.00 0.00 0.50 1.00 .........................................................TAGTGCACTTGAGACGGCCGAAA................ 23 2 1.50 1.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGCCGGCCGA.................. 21 2 1.50 1.50 0.00 0.00 0.00 ...................TGGTTCGTCACAAGGGCAATTCA...................................................... 23 2 1.50 1.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGTCGA.................. 21 2 1.50 1.50 0.00 0.00 0.00 .........................................................TACTGCACTTGAGACGGCCGAA................. 22 2 1.50 1.00 0.00 0.00 0.50 .........................................................TATTGCACTTGAGACGGACGA.................. 21 2 1.50 1.50 0.00 0.00 0.00 .........................................................TATTGCACTTCAGACGGCCGA.................. 21 2 1.50 0.50 0.00 0.00 1.00 .........................................................TCTTGCACTTGAGACGGCCGAA................. 22 2 1.50 1.50 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGAAACA.............. 25 2 1.50 1.00 0.00 0.00 0.50
2	chr2R:15132973-15133069 -	55.38	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACT--AGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC GATCTAGCCAACAATTTTCTGCTGCG-CATTGGGGCACTACTGTTTTTTTTAAATTGAGTATTGCACTTTTCACAGCCTTAAAATGTTAGCAACTGCC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ..........................................................GTATTGCACTTTTCACAGCCTT.................. 22 3 118.67 2.00 1.00 2.33 113.33 ...........................................................TATTGCACTTTTCACAGCCTT.................. 21 3 96.33 23.67 0.00 1.00 71.67 ...........................................................TATTGCACTTTTCACAGCCT................... 20 3 88.00 3.00 0.67 4.67 79.67 ...........................................................TATTGCACTTTTCACAGCCTTA................. 22 3 87.33 75.33 0.33 1.33 10.33 ...........................................................TATTGCACTTTTCACAGCCTTAA................ 23 3 69.33 60.00 0.00 1.33 8.00 ..........................................................GTATTGCACTTTTCACAGCCT................... 21 3 46.00 0.00 0.00 1.33 44.67 ...................TGCTGCG-CATTGGGGCACTACTG....................................................... 23 3 29.67 22.67 0.00 0.33 6.67 ...................TGCTGCG-CATTGGGGCACTACT........................................................ 22 3 27.00 21.67 0.00 0.00 5.33 ...........................................................TATTGCACTTTTCACAGCCTTAAA............... 24 3 13.67 7.00 0.00 1.00 5.67 ...........................................................TATTGCACTTTTCACAGCCC................... 20 3 9.33 0.00 0.00 0.00 9.33 ..........................................................GTATTGCACTTTTCACAGCCTTA................. 23 3 8.33 0.67 0.33 1.00 6.33 ...................TGCTGCG-CATTGGGGCACTAC......................................................... 21 3 7.00 6.67 0.00 0.00 0.33 .................TCTGCTGCG-CATTGGGGCACT........................................................... 21 3 7.00 0.00 0.00 0.00 7.00 ..........................................................GTATTGCACTTTTCACAGCCC................... 21 3 5.00 0.00 0.00 0.00 5.00 ...................TGCTGCG-CATTGGGGCACTA.......................................................... 20 3 5.00 4.00 0.00 0.00 1.00 ..........................................................GTATTGCACTTTTCACAGCC.................... 20 3 4.33 0.00 0.00 0.33 4.00 ...................TGCTGCG-CATTGGGGCACTACA........................................................ 22 3 4.00 4.00 0.00 0.00 0.00 .................TCTGCTGCG-CATTGGGGCAC............................................................ 20 3 3.67 0.67 0.00 0.00 3.00 ..................CTGCTGCG-CATTGGGGCACTACT........................................................ 23 3 3.33 3.00 0.00 0.00 0.33 ...........................................................TATTGCACTTTTCACAGCC.................... 19 3 3.33 0.00 0.00 0.33 3.00 ...........................................................TATTGCACTTTTCACAGCCTC.................. 21 3 3.33 0.00 0.00 0.00 3.33 ..........................................................GTATTGCACTTTTCACAGCCTC.................. 22 3 3.00 0.00 0.00 0.00 3.00 ..................CTGCTGCG-CATTGGGGCACT........................................................... 20 3 2.67 1.33 0.00 0.00 1.33 ...........................................................TATTGCACTTTTCACAGCCG................... 20 3 2.67 0.00 0.33 0.00 2.33 ..........................................................GTATTGCACTTTTCACAGCCG................... 21 3 2.67 0.00 0.00 0.00 2.67 ...................TGCTGCG-CATTGGGGCACTACTAA...................................................... 24 3 2.00 2.00 0.00 0.00 0.00 ...................TGCTGCG-CATTGGGGCACT........................................................... 19 3 1.67 1.00 0.00 0.67 0.00 ...........................................................TATTGCACTTTTCACAGCCTTAAAA.............. 25 3 1.67 0.00 0.00 0.00 1.67 .................TCTGCTGCG-CATTGGGGCA............................................................. 19 3 1.67 0.00 0.00 0.00 1.67 ..................CTGCTGCG-CATTGGGGCAC............................................................ 19 3 1.33 0.67 0.33 0.00 0.33 .................TCTGCTGCG-CATTGGGGCACC........................................................... 21 3 1.00 0.00 0.00 0.00 1.00 ...........................................................TATTGCACTTTTCACAGCCTG.................. 21 3 1.00 0.00 0.00 0.00 1.00 ..................CTGCTGCG-CATTGGGGCACTAC......................................................... 22 3 1.00 0.67 0.00 0.00 0.33 ...........................................................TATTGCACTTTTCACAGCCTTAG................ 23 3 1.00 0.67 0.00 0.00 0.33 ..........................................................GTATTGCACTTTTCACAGCCTG.................. 22 3 1.00 0.00 0.00 0.00 1.00 ...........................................................TATTGCACTTTTCACAGCCTTT................. 22 3 1.00 1.00 0.00 0.00 0.00 ...................TGCTGCG-CATTGGGGCACTACTA....................................................... 23 3 1.00 1.00 0.00 0.00 0.00 ...........................................................TATTGCACTTTTCACAGCCTTTA................ 23 3 1.00 1.00 0.00 0.00 0.00

droSec1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_1:14025748-14025843 -	90.78	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC AATTAAGTTTAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATTTTTAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAAAGAATC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head .........................................................TATTGCACTTGAGACGGCCGA.................. 21 4 622.00 80.25 490.75 51.00 .........................................................TATTGCACTTGAGACGGCCGAA................. 22 4 326.75 50.00 240.00 36.75 .........................................................TATTGCACTTGAGACGGCCGAAA................ 23 4 295.75 17.25 251.50 27.00 .........................................................TATTGCACTTGAGACGGCCGAAAA............... 24 4 93.25 5.50 80.25 7.50 .........................................................TATTGCACTTGAGACGGCCG................... 20 4 70.50 11.00 54.75 4.75 ...................TGGTTCGTCACAAGGGCAATT........................................................ 21 4 49.00 12.75 32.25 4.00 ...................TGGTTCGTCACAAGGGCAATTCT...................................................... 23 4 48.50 12.50 28.50 7.50 ...................TGGTTCGTCACAAGGGCAATTC....................................................... 22 4 47.25 12.00 30.50 4.75 .........................................................TATTGCACTTGAGACGGCCGAAT................ 23 4 41.75 20.50 20.25 1.00 .........................................................TATTGCACTTGAGACGGCCGAT................. 22 4 38.25 17.00 18.50 2.75 .........................................................TATTGCACTTGAGACGGCCGAAAAA.............. 25 4 19.50 1.00 16.50 2.00 ...................TGGTTCGTCACAAGGGCAAT......................................................... 20 4 19.25 6.25 12.50 0.50 .........................................................TATTGCACTTGAGACGGCCGATA................ 23 4 15.50 8.50 5.50 1.50 .........................................................TATTGCACTTGAGACGGCCGATT................ 23 4 8.75 7.75 0.75 0.25 .........................................................TATTGCACTTGAGACGGCCGT.................. 21 4 8.25 3.50 4.00 0.75 .........................................................TATTGCACTTGAGACGGCCGAAAT............... 24 4 8.25 5.00 2.75 0.50 ...................TGGTTCGTCACAAGGGCAATTCTGCA................................................... 26 4 5.50 2.25 2.00 1.25 .........................................................TATTGCACTTGAGACGGC..................... 18 4 5.00 0.00 4.00 1.00 ...................TGGTTCGTCACAAGGGCAA.......................................................... 19 4 5.00 2.50 2.25 0.25 .........................................................TATTGCACTTGAGACGGCCGAAG................ 23 4 4.50 0.50 4.00 0.00 ...................TGGTTCGTCACAAGGGCAATTT....................................................... 22 4 4.50 3.50 1.00 0.00 .........................................................TATTGCACTTGAGACGGCC.................... 19 4 4.25 0.75 2.75 0.75 .........................................................TATTGCACTTGAGACGGCCGATAT............... 24 4 4.25 3.75 0.25 0.25 .........................................................TATTGCACTTGAGACGGCCGAAC................ 23 4 3.75 1.00 2.25 0.50 ...................TGGTTCGTCACAAGGGCAATTCA...................................................... 23 4 3.50 0.25 2.75 0.50 ..........................................................ATTGCACTTGAGACGGCCGA.................. 20 4 3.25 0.50 2.25 0.50 ..........................................................ATTGCACTTGAGACGGCCGAAA................ 22 4 3.00 0.25 2.00 0.75 .........................................................TATTGCACTTGAGACGGCCGTT................. 22 4 2.75 1.00 1.25 0.50 .........................................................TATTGCACTTGAGATGGCCGA.................. 21 4 2.75 0.25 2.50 0.00 .........................................................TATTGCACTTGAGACGGCCGAC................. 22 4 2.75 0.50 2.25 0.00 .........................................................TATTGCACTTGAGACGGCCGATTT............... 24 4 2.75 2.50 0.25 0.00 ..........................................................ATTGCACTTGAGACGGCCGAA................. 21 4 2.50 0.50 2.00 0.00 .........................................................TATTGCACTTGAGACGGCCGTTT................ 23 4 2.50 2.25 0.00 0.25 .........................................................TATTGCACTTGAGACGGCCGAATT............... 24 4 2.50 2.25 0.00 0.25 .........................................................TATTGCACTTGAGATGGCCGAA................. 22 4 2.25 0.00 2.00 0.25 .........................................................TATTGTACTTGAGACGGCCGA.................. 21 4 2.25 0.00 2.25 0.00 .........................................................TATTGCACTTGAGGCGGCCGA.................. 21 4 2.00 0.25 1.75 0.00 .........................................................TATTGCACTTGAGACGGCCGAG................. 22 4 2.00 0.50 1.25 0.25 ...........................................................TTGCACTTGAGACGGCCGA.................. 19 4 2.00 0.00 2.00 0.00 .........................................................TATTGCATTTGAGACGGCCGAA................. 22 4 2.00 0.25 1.75 0.00 ..........................................................ATTGCACTTGAGACGGCCGAAT................ 22 4 2.00 1.00 0.75 0.25 .........................................................TATTGCACTTGAGCCGGCCGA.................. 21 4 1.75 0.75 1.00 0.00 .........................................................TATTGCACTTGAGACGGCCGTA................. 22 4 1.75 1.25 0.50 0.00 .........................................................TATTGCACTTGAGACGGCCGACA................ 23 4 1.75 0.00 1.50 0.25 .........................................................TATTGCACTTGAGACGGCCTGA................. 22 4 1.75 0.00 1.75 0.00 .........................................................TATTGCACTTGAGACGGCTGA.................. 21 4 1.75 1.00 0.75 0.00 .........................................................TATTGCACCTGAGACGGCCGA.................. 21 4 1.50 0.00 1.50 0.00 .........................................................TATTGCATTTGAGACGGCCGA.................. 21 4 1.50 0.00 1.50 0.00 ...................TGGTTCGTCACAAGGGCAATTA....................................................... 22 4 1.50 0.75 0.75 0.00 .........................................................TATTGCACTTGAGACAGCCGAA................. 22 4 1.50 0.00 1.25 0.25 .........................................................TATTGCACTTGAGAAGGCCGAAA................ 23 4 1.50 0.25 1.25 0.00 .........................................................TATTGCACTTGAGAAGGCCGA.................. 21 4 1.50 0.00 1.25 0.25 .........................................................TCTTGCACTTGAGACGGCCGA.................. 21 4 1.25 0.00 1.00 0.25 .........................................................TATTGCACTTGAGACGGTT.................... 19 4 1.25 1.25 0.00 0.00 ...................TGGTTTGTCACAAGGGCAATT........................................................ 21 4 1.25 0.00 1.25 0.00 .........................................................TATTGCACTTGAGACGGCCTAAA................ 23 4 1.25 0.00 0.75 0.50 .........................................................TATTGCACTTGAGACGGCCGAATTT.............. 25 4 1.25 1.25 0.00 0.00 .........................................................TATTGCACTTGAGACGACCGA.................. 21 4 1.25 0.00 1.00 0.25 ...................TGGTTCGTCACAAGGGCAATTCTG..................................................... 24 4 1.25 0.50 0.75 0.00 .........................................................TATTGCACTTGAGACGGTCGA.................. 21 4 1.25 0.25 1.00 0.00 .........................................................TATTGCATTTGAGACGGCCGAAA................ 23 4 1.25 0.00 1.25 0.00 .........................................................TATTGCACTTGAGACGGTA.................... 19 4 1.25 1.25 0.00 0.00 .........................................................TATTGCACTTGAGACGGCTGAAA................ 23 4 1.00 0.75 0.25 0.00 .........................................................TATTGCACTTGAGACGGCCAAAA................ 23 4 1.00 0.00 0.75 0.25 .........................................................TATTGCACTTGAGACAGCCGA.................. 21 4 1.00 0.00 1.00 0.00 ...................TGGTTCGTCACAAGGGCACTT........................................................ 21 4 1.00 0.75 0.25 0.00 .........................................................TATTGCACTTGAGACGGCGGA.................. 21 4 1.00 1.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGC.................. 21 4 1.00 0.25 0.75 0.00 .........................................................TATTCCACTTGAGACGGCCGAA................. 22 4 1.00 0.25 0.50 0.25 ...................TGGTTCGTCACAAGGGCAATTCTGC.................................................... 25 4 1.00 0.00 1.00 0.00 .........................................................TATTGCGCTTGAGACGGCCGAAA................ 23 4 1.00 0.00 1.00 0.00 .........................................................TATTGCACTTGAGACGGCAGA.................. 21 4 1.00 0.75 0.25 0.00 ...................TGGTTCGTCACAAGGGCAATTCC...................................................... 23 4 1.00 0.25 0.75 0.00 .........................................................TATTGCACTTGAGATGGCCGAAA................ 23 4 1.00 0.00 0.50 0.50 .........................................................TATTGCACTTGGGACGGCCGA.................. 21 4 1.00 0.00 0.75 0.25 .........................................................TATTGCACTTGAGACTGCCGA.................. 21 4 1.00 0.25 0.50 0.25 ...................TGGTTCGTCACAAGGGCAATTAA...................................................... 23 4 1.00 0.00 1.00 0.00 .........................................................TATTGCACTTGAGACGGCCGAACT............... 24 4 1.00 0.75 0.25 0.00 ...........................................................TTGCACTTGAGACGGCCG................... 18 4 0.75 0.00 0.75 0.00 .........................................................TATTGCACTTGAGACGGCAGAA................. 22 4 0.75 0.50 0.00 0.25 ...................TGGTTCGTCACAAGGGCAATA........................................................ 21 4 0.75 0.50 0.00 0.25 .........................................................TATTGCACTTGAGACGGCCGATATA.............. 25 4 0.75 0.75 0.00 0.00 .........................................................TATTGCACTAGAGACGGCCGA.................. 21 4 0.75 0.00 0.75 0.00 ...................TGGTTCGTCACAAGGGCA........................................................... 18 4 0.75 0.25 0.50 0.00 .........................................................TATTGCACTTGAGACGCCCGAA................. 22 4 0.75 0.50 0.25 0.00 .........................................................TATTGCACTTGAGACGGCCAAA................. 22 4 0.75 0.00 0.50 0.25 .........................................................TATTGCACTTGAGACGGCCGATTTAT............. 26 4 0.75 0.75 0.00 0.00 .........................................................TATTGCACTTGAGCCGGCCGAA................. 22 4 0.75 0.00 0.50 0.25 ...........................................................TTGCACTTGAGACGGCCGAAA................ 21 4 0.75 0.00 0.75 0.00 .........................................................TATTGCACTTAAGACGGCCGAA................. 22 4 0.75 0.00 0.25 0.50 .........................................................TATTGCACTTGAGACGGCCGG.................. 21 4 0.75 0.00 0.75 0.00 ...................TGGTTCGTCACAAGGGCAATTTT...................................................... 23 4 0.75 0.75 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGAATA............... 24 4 0.75 0.75 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGAACA............... 24 4 0.75 0.25 0.50 0.00 .........................................................TATTGCACTTGAGACGGCCGTAT................ 23 4 0.75 0.75 0.00 0.00 .........................................................TATTTCACTTGAGACGGCCGAAA................ 23 4 0.75 0.00 0.75 0.00 .........................................................TATTGCACTTGAGACGGCCGATTA............... 24 4 0.75 0.75 0.00 0.00 .........................................................TATTGCACTTGAGACGGTCGAAA................ 23 4 0.75 0.00 0.75 0.00 .........................................................TATTGCACTTGAGACGGCCGAATAA.............. 25 4 0.75 0.00 0.75 0.00 .........................................................TATTGCACTTGAGACCGCCGA.................. 21 4 0.75 0.00 0.50 0.25 .........................................................TATTGCACTTGAGTCGGCCGA.................. 21 4 0.75 0.00 0.75 0.00
3	super_1:14025887-14025983 -	54.39	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTA-A-CTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC GATCTAGCCAACAATTTTCTGCTGCG-CATTGGGGCACTACTGTTTTTTTTTAATTGAGTATTGCACTTTTCACAGCCTTAAAATGTTAGCAACTGCC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ...................TGCTGCG-CATTGGGGCACTACT........................................................ 22 3 154.67 2.33 144.33 8.00 ...........................................................TATTGCACTTTTCACAGCCTTA................. 22 3 75.67 0.67 67.67 7.33 ...................TGCTGCG-CATTGGGGCACTACTG....................................................... 23 3 55.67 5.00 42.00 8.67 ...........................................................TATTGCACTTTTCACAGCCTTAA................ 23 3 44.00 0.67 40.33 3.00 ...........................................................TATTGCACTTTTCACAGCCTT.................. 21 3 23.00 0.00 21.33 1.67 ..................CTGCTGCG-CATTGGGGCACTACT........................................................ 23 3 18.33 1.33 14.67 2.33 ...................TGCTGCG-CATTGGGGCACTA.......................................................... 20 3 16.67 1.00 14.67 1.00 ...................TGCTGCG-CATTGGGGCACT........................................................... 19 3 16.33 0.00 16.00 0.33 ...................TGCTGCG-CATTGGGGCACTAC......................................................... 21 3 11.33 0.33 10.67 0.33 ...........................................................TATTGCACTTTTCACAGCCT................... 20 3 10.67 0.33 10.00 0.33 ...................TGCTGCG-CATTGGGGCACTACA........................................................ 22 3 9.67 0.00 9.33 0.33 ...........................................................TATTGCACTTTTCACAGCCTTAAA............... 24 3 6.00 0.33 5.33 0.33 ..................CTGCTGCG-CATTGGGGCACTAC......................................................... 22 3 4.33 0.33 4.00 0.00 ...................TGCTGCG-CATTGGGGCACTACTAA...................................................... 24 3 3.33 0.00 3.00 0.33 ...................TGCTGCG-CATTGGGGCACTACTGT...................................................... 24 3 3.33 0.00 3.00 0.33 ..................CTGCTGCG-CATTGGGGCACTACA........................................................ 23 3 3.00 0.00 3.00 0.00 ..................CTGCTGCG-CATTGGGGCACT........................................................... 20 3 2.67 0.33 2.33 0.00 ...................TGCTGCG-CATTGGGGCACTACTGA...................................................... 24 3 2.33 0.00 2.33 0.00 ...................TGCTGCG-CATTGGGGCACTT.......................................................... 20 3 1.67 0.00 1.33 0.33 ..................CTGCTGCG-CATTGGGGCAC............................................................ 19 3 1.67 0.00 1.67 0.00 .................TCTGCTGCG-CATTGGGGCAC............................................................ 20 3 1.67 0.00 1.67 0.00 ...................TGCTGCG-CATTGGGGCACTACAA....................................................... 23 3 1.67 0.00 1.67 0.00 ...................TGCTGCG-CATTGGGGCACTACTA....................................................... 23 3 1.67 0.00 1.67 0.00 ...................TGCTGCG-CATTGGGGCACTACTGAA..................................................... 25 3 1.33 0.00 1.00 0.33 .................TCTGCTGCG-CATTGGGGCACT........................................................... 21 3 1.00 0.00 1.00 0.00 ...................TGCTGCG-CATTGGGGCACTACTGTAA.................................................... 26 3 1.00 0.00 1.00 0.00 ..................CTGCTGCG-CATTGGGGCACTA.......................................................... 21 3 1.00 0.00 1.00 0.00 ...................TGTTGCG-CATTGGGGCACTACT........................................................ 22 3 1.00 0.00 1.00 0.00
2	super_1:14025600-14025706 -	43.11	AATTAAGTTTGAAGCGATTTGGTTCGTC-----------ACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC CGGCAAGACTGGAAATTTCTAGATAATTTTTCGGACGGTATATGAGTCAATGTTTTCTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ....................................................................TATTGCACATTCACCGGCCTGA................. 22 3 1024.00 15.00 899.67 109.33 ....................................................................TATTGCACATTCACCGGCCTG.................. 21 3 99.67 2.00 88.67 9.00 ....................................................................TATTGCACATTCACCGGCCTGAA................ 23 3 68.33 0.67 61.67 6.00 ....................................................................TATTGCACATTCACCGGCCTGAAA............... 24 3 43.33 0.00 41.00 2.33 .....................................................................ATTGCACATTCACCGGCCTGA................. 21 3 17.00 0.00 16.00 1.00 ....................................................................TATTGCACATTCACCGGCCTGAT................ 23 3 13.33 0.33 11.33 1.67 ....................................................................TATTGCACATTCACCGGCCTGAAT............... 24 3 12.00 1.33 10.33 0.33 ....................................................................TATTGCACATTCACCGGCCT................... 20 3 9.33 0.33 8.33 0.67 ....................................................................TATTGCACATTCACCGGCCTGT................. 22 3 8.67 2.33 5.00 1.33 ....................................................................TATTGCACATTCACCGGCCTGAAAA.............. 25 3 7.00 0.33 6.33 0.33 ....................................................................TATTGCACATTCACCGGTCTGA................. 22 3 4.00 0.00 3.33 0.67 ....................................................................TATTGCACATTCACCGGCTTGA................. 22 3 3.67 0.33 3.33 0.00 ....................................................................TATTGCACATTCACCGGC..................... 18 3 3.67 0.33 3.33 0.00 ....................................................................TATTCCACATTCACCGGCCTGA................. 22 3 3.00 0.00 3.00 0.00 ....................................................................TATTGCACATTCATCGGCCTGA................. 22 3 2.67 0.00 2.67 0.00 ...............................CGGACGGTATATGAGTCAATGTT..................................................... 23 3 2.67 0.33 1.67 0.67 ....................................................................TATTGCATATTCACCGGCCTGA................. 22 3 2.67 0.00 2.67 0.00 ....................................................................TATTGCACATTCACCGACCTGA................. 22 3 2.33 0.00 2.33 0.00 ......................................................................TTGCACATTCACCGGCCTGA................. 20 3 2.33 0.00 2.33 0.00 ....................................................................TATTGCGCATTCACCGGCCTGA................. 22 3 2.33 0.00 2.33 0.00 ....................................................................TATTGxxCATTCACCGGCCTGA................. 20 3 2.33 0.00 2.33 0.00 ....................................................................TATTGCACATTCACCGCCCTGA................. 22 3 2.00 0.00 1.67 0.33 ....................................................................TATTGCACATTCACCGGCCTGTAT............... 24 3 2.00 2.00 0.00 0.00 ....................................................................TATTGCACATTCACCGGCCTGACA............... 24 3 1.67 0.00 1.67 0.00 .....................................................................ATTGCACATTCACCGGCCTG.................. 20 3 1.67 0.00 1.67 0.00 ....................................................................TATTGCACATTCATCGGCCTGAA................ 23 3 1.67 0.00 1.67 0.00 ....................................................................TATTGCACATTCACCGGCCTGAAAT.............. 25 3 1.67 0.33 1.33 0.00 ....................................................................TATTGCACATTCACCGGCCTGG................. 22 3 1.67 0.00 1.67 0.00 ....................................................................TATTGCACATTCACCGGCCTGAG................ 23 3 1.67 0.00 1.67 0.00 ....................................................................TATTGCACATTCACCGGCCTGAAC............... 24 3 1.67 0.33 1.33 0.00 ....................................................................TATTGCACGTTCACCGGCCTGA................. 22 3 1.67 0.00 1.33 0.33 ....................................................................TATTGCACATTCACCGGCCTGAC................ 23 3 1.33 0.00 1.33 0.00 ....................................................................TATTGCACATTCACCGTCCTGA................. 22 3 1.33 0.00 0.33 1.00 ....................................................................TATTTCACATTCACCGGCCTGA................. 22 3 1.33 0.00 1.00 0.33 ....................................................................TATTGCACATTCACCGGCCTGATA............... 24 3 1.33 0.33 0.67 0.33 ....................................................................TATTGCCCATTCACCGGCCTGA................. 22 3 1.33 0.00 1.33 0.00 ....................................................................TATTGCACATTCACCTGCCTGA................. 22 3 1.33 0.00 0.67 0.67 ....................................................................TATTGCACACTCACCGGCCTGA................. 22 3 1.33 0.00 1.33 0.00 ....................................................................TATTGCACATACACCGGCCTGA................. 22 3 1.33 0.00 1.33 0.00 ....................................................................TACTGCACATTCACCGGCCTGA................. 22 3 1.33 0.00 1.33 0.00 ....................................................................TATTGCACATTCACCGGCCTGAAAAA............. 26 3 1.33 0.00 1.33 0.00 ....................................................................TATTGCACATTCACCGGTCTGAA................ 23 3 1.00 0.00 1.00 0.00 ....................................................................TATTGCACATCCACCGGCCTGA................. 22 3 1.00 0.00 1.00 0.00 ....................................................................TATTGTACATTCACCGGCCTGA................. 22 3 1.00 0.00 1.00 0.00 ....................................................................TATTGCACATTAACCGGCCTGA................. 22 3 1.00 0.00 1.00 0.00 ...................................................................CTATTGCACATTCACCGGCCTGA................. 23 3 1.00 0.00 1.00 0.00 ....................................................................TATTGCACATTCACTGGCCTGA................. 22 3 1.00 0.00 1.00 0.00 ....................................................................TATTGCATATTCACCGGCCTG.................. 21 3 1.00 0.00 1.00 0.00 ....................................................................TATTGCACATTCACCGGCCCGA................. 22 3 1.00 0.00 1.00 0.00 ....................................................................TATTGCACATTCATCGGCCTGAAA............... 24 3 1.00 0.00 1.00 0.00 ....................................................................AATTGCACATTCACCGGCCTGA................. 22 3 1.00 0.00 1.00 0.00 ....................................................................TATTGCACATTCACCGGCCTGC................. 22 3 1.00 0.00 1.00 0.00 .....................................................................ATTGCACATTCACCGGCCTGAA................ 22 3 1.00 0.33 0.67 0.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:12724685-12724781 +	83.92	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAA-CTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC AATTGCGTTTGAAGCGCTTCGGTTCGTCCCAGGAGCAATTCTGCACTATTAAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAACGAATC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ..........................................................TATTGCACTTGAGACGGCCGGA................. 22 2 1156.50 878.00 20.50 205.00 38.50 14.50 ..........................................................TATTGCACTTGAGACGGCCGG.................. 21 2 507.00 430.00 5.50 60.50 10.00 1.00 ..........................................................TATTGCACTTGAGACGGCCGGAA................ 23 2 306.00 277.00 2.00 18.50 7.50 1.00 ..........................................................TATTGCACTTGAGACGGCCGGAT................ 23 2 189.50 88.50 2.00 28.00 3.00 68.00 ..........................................................TATTGCACTTGAGACGGCCG................... 20 2 111.50 91.50 2.00 14.50 1.50 2.00 ..........................................................TATTGCACTTGAGACGGCCGGAAA............... 24 2 106.00 92.00 2.50 8.00 3.00 0.50 ..........................................................TATTGCACTTGAGACGGCCGGT................. 22 2 73.00 43.00 0.50 26.00 3.50 0.00 ..........................................................TATTGCACTTGAGACGGCCGGAC................ 23 2 31.00 7.00 0.00 1.00 1.00 22.00 ..........................................................TATTGCACTTGAGACGGCCGGATT............... 24 2 26.50 12.50 0.50 6.00 0.00 7.50 ..........................................................TATTGCACTTGAGACGGCCGGAAT............... 24 2 22.00 17.50 0.00 4.00 0.50 0.00 ..........................................................TATTGCACTTGAGACGGCCGGG................. 22 2 19.00 15.00 0.00 1.50 1.50 1.00 ..........................................................TATTGCACTTGAGACGGCCGGCA................ 23 2 17.00 16.00 0.00 0.00 1.00 0.00 ..........................................................TATTGCACTTGAGACGGCCCG.................. 21 2 15.50 15.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGC................. 22 2 14.50 9.50 0.50 2.50 1.50 0.50 ..........................................................TATTGCACTTGAGACGGCCGT.................. 21 2 11.50 3.00 0.00 8.50 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGAAAA.............. 25 2 11.00 9.50 0.50 1.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGTT................ 23 2 7.50 4.00 0.50 3.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGAG................ 23 2 7.00 3.50 0.00 1.50 0.00 2.00 ..........................................................TATTGCACTTGAGACGGCCGGATTT.............. 25 2 6.50 1.00 0.00 1.50 0.00 4.00 ..........................................................TATTGCACTTGAGACGGCCGGGA................ 23 2 5.50 5.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGATA............... 24 2 5.50 5.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGTTT............... 24 2 5.00 0.00 0.00 4.50 0.50 0.00 ..........................................................TATTGCACTTGAGACGGCC.................... 19 2 5.00 4.00 0.00 0.50 0.50 0.00 ..........................................................TATTGCACTTGAGACGGCCGGATG............... 24 2 5.00 2.00 0.00 0.00 0.00 3.00 ..........................................................TATTGCACTTGAGACGGCCGGACA............... 24 2 4.50 3.00 0.50 0.50 0.00 0.50 ..........................................................TATTGCACTTGAGACGGCCGGCT................ 23 2 3.50 3.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCCGA................. 22 2 3.50 3.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACAGCCGGA................. 22 2 3.50 3.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGTA................ 23 2 3.00 1.00 0.00 2.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGGCGG.................. 21 2 3.00 3.00 0.00 0.00 0.00 0.00 ...........................................................ATTGCACTTGAGACGGCCGGA................. 21 2 3.00 2.00 0.00 1.00 0.00 0.00 ..........................................................TATTGCACTTGCGACGGCCGGA................. 22 2 3.00 2.50 0.00 0.00 0.50 0.00 ..........................................................TATTGCACTTGAGAAGGCCGGA................. 22 2 3.00 3.00 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGGCGGA................. 22 2 3.00 3.00 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGACT............... 24 2 3.00 1.00 0.00 0.50 0.00 1.50 ..........................................................TATCGCACTTGAGACGGCCGGA................. 22 2 2.50 2.00 0.00 0.50 0.00 0.00 ..........................................................TATTGCACTTGAGCCGGCCGGA................. 22 2 2.50 2.00 0.00 0.50 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGGT................ 23 2 2.50 2.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGTTT................ 23 2 2.50 0.00 0.00 2.50 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGCTT............... 24 2 2.00 1.50 0.00 0.50 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCAGA................. 22 2 2.00 2.00 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACCGCCGGA................. 22 2 2.00 2.00 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGAA................. 22 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGAAC............... 24 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGACACGGCCGG.................. 21 2 1.50 1.00 0.00 0.50 0.00 0.00 ..........................................................TATTGCACTTGAGATGGCCGGA................. 22 2 1.50 1.00 0.00 0.50 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGATTAAA............ 27 2 1.50 0.00 0.00 0.50 0.00 1.00 ..........................................................TATTGCACTTGCGACGGCCGG.................. 21 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGACGG.................. 21 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACCTGAGACGGCCGGA................. 22 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGTACTTGAGACGGCCGGA................. 22 2 1.50 1.00 0.00 0.50 0.00 0.00 ..........................................................TAGTGCACTTGAGACGGCCGGG................. 22 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGACGGA................. 22 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGGATC............... 24 2 1.50 1.00 0.00 0.00 0.00 0.50 ...........................................................ATTGCACTTGAGACGGCCGGAT................ 22 2 1.50 1.00 0.00 0.50 0.00 0.00 ..........................................................TATTGCACTTGAGACGGC..................... 18 2 1.50 0.50 0.50 0.50 0.00 0.00 ..........................................................TATTGCACTTGAGACGCCCGGA................. 22 2 1.50 1.00 0.00 0.50 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCAGGAT................ 23 2 1.50 1.00 0.00 0.50 0.00 0.00 ..........................................................TATTACACTTGAGACGGCCGGA................. 22 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGTCGGA................. 22 2 1.50 1.00 0.00 0.50 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGAAA................ 23 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCT................... 20 2 1.50 1.00 0.00 0.00 0.00 0.50 ..........................................................TATTGCACTTTAGACGGCCGGA................. 22 2 1.50 1.50 0.00 0.00 0.00 0.00 ...................CGGTTCGTCCCAGGAGCAATTC........................................................ 22 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGATGGCCGGAA................ 23 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGGCGGCCGGAA................ 23 2 1.50 1.00 0.50 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCAGG.................. 21 2 1.50 1.50 0.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGTCCGG.................. 21 2 1.50 1.00 0.00 0.50 0.00 0.00 ..........................................................TATTGCACTTGAGACGGCCGA.................. 21 2 1.50 1.00 0.00 0.50 0.00 0.00 ..........................................................TATTGCAATTGAGACGGCCGGA................. 22 2 1.50 1.50 0.00 0.00 0.00 0.00

droEre2 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scaffold_4845:10618147-10618242 -	85.68	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC AATTAAGTTTGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATTTTTAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAACAAAAC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .........................................................TATTGCACTTGAGACGGCCGGA................. 22 4 96.00 61.75 4.00 0.00 30.25 .........................................................TATTGCACTTGAGACGGCCGG.................. 21 4 39.25 20.25 2.25 0.00 16.75 .........................................................TATTGCACTTGAGACGGCCGGAA................ 23 4 18.75 17.25 0.00 0.00 1.50 .........................................................TATTGCACTTGAGACGGCCG................... 20 4 17.25 4.00 2.00 0.00 11.25 .........................................................TATTGCACTTGAGACGGCCGGT................. 22 4 11.25 1.50 1.75 0.00 8.00 .........................................................TATTGCACTTGAGACGGCCGGAT................ 23 4 9.50 3.75 1.25 0.00 4.50 .........................................................TATTGCACTTGAGACGGCCGGAAA............... 24 4 7.50 7.25 0.00 0.00 0.25 .........................................................TATTGCACTTGAGACGGCCGGTT................ 23 4 4.25 0.00 0.25 0.00 4.00 .........................................................TATTGCACTTGAGACGGCCGT.................. 21 4 4.00 0.25 0.75 0.00 3.00 .........................................................TATTGCACTTGAGACGGCCGGTTT............... 24 4 2.50 0.00 0.00 0.00 2.50 .........................................................TATTGCACTTGAGACGGCC.................... 19 4 2.25 0.25 0.00 0.00 2.00 .........................................................TATTGCACTTGAGACGGCCCGA................. 22 4 2.25 2.25 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGTTT................ 23 4 2.00 0.00 0.00 0.00 2.00 .........................................................TATTGCACTTGAGACGGCCCG.................. 21 4 1.75 1.75 0.00 0.00 0.00 .........................................................TATTGCACTTGATACGGCCGGA................. 22 4 1.50 1.00 0.25 0.00 0.25 .........................................................TATTGCACTTGAGACGGCCT................... 20 4 1.25 0.00 0.25 0.00 1.00 .........................................................TATTGCACTTGAGACGGCCTGA................. 22 4 1.25 0.75 0.00 0.00 0.50 .........................................................TATTGCACTTGAGACGGCCGGTA................ 23 4 1.00 0.00 0.25 0.00 0.75 .........................................................TATTGCACTTGAGACGGCCGTT................. 22 4 1.00 0.00 0.25 0.00 0.75 .........................................................TATTGCCCTTGAGACGGCCGGA................. 22 4 1.00 0.50 0.25 0.00 0.25 .........................................................TATTGCACTTGAGACGGCCGGG................. 22 4 1.00 1.00 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGGATA............... 24 4 1.00 0.25 0.00 0.00 0.75 .........................................................TATTGCACTTGAGACGGCCGGGA................ 23 4 0.75 0.75 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACTGCCGGA................. 22 4 0.75 0.25 0.00 0.00 0.50 .........................................................TATTGCACTTGAGACGGCCGGCA................ 23 4 0.75 0.75 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGA.................. 21 4 0.75 0.75 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGAA................. 22 4 0.75 0.75 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGGATT............... 24 4 0.75 0.25 0.00 0.00 0.50 .........................................................TATTGCACTTGAGACGGCCGGC................. 22 4 0.75 0.50 0.25 0.00 0.00 .........................................................TATTGCACTTGATACGGCCGGAA................ 23 4 0.75 0.75 0.00 0.00 0.00 .........................................................TATTGCACTTGAGACGGCCGTA................. 22 4 0.75 0.50 0.00 0.00 0.25 .........................................................TATTGCACTTGAGACCGCCGGA................. 22 4 0.75 0.50 0.00 0.00 0.25 .........................................................TATTGCACTTGAGACTGCCGG.................. 21 4 0.75 0.50 0.00 0.00 0.25 .........................................................TATTGCACTTGAGACGGCCGGTG................ 23 4 0.75 0.00 0.00 0.00 0.75 .........................................................TATTGCACTTGAGACGGCCGGAAT............... 24 4 0.75 0.75 0.00 0.00 0.00
1	scaffold_4845:10616687-10616785 -	81.52	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTT---AACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC AATTAAGTTTGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATTTTTTTTAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAACAAAAC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ............................................................TATTGCACTTGAGACGGCCGGA................. 22 4 96.00 61.75 4.00 0.00 30.25 ............................................................TATTGCACTTGAGACGGCCGG.................. 21 4 39.25 20.25 2.25 0.00 16.75 ............................................................TATTGCACTTGAGACGGCCGGAA................ 23 4 18.75 17.25 0.00 0.00 1.50 ............................................................TATTGCACTTGAGACGGCCG................... 20 4 17.25 4.00 2.00 0.00 11.25 ............................................................TATTGCACTTGAGACGGCCGGT................. 22 4 11.25 1.50 1.75 0.00 8.00 ............................................................TATTGCACTTGAGACGGCCGGAT................ 23 4 9.50 3.75 1.25 0.00 4.50 ............................................................TATTGCACTTGAGACGGCCGGAAA............... 24 4 7.50 7.25 0.00 0.00 0.25 ............................................................TATTGCACTTGAGACGGCCGGTT................ 23 4 4.25 0.00 0.25 0.00 4.00 ............................................................TATTGCACTTGAGACGGCCGT.................. 21 4 4.00 0.25 0.75 0.00 3.00 ............................................................TATTGCACTTGAGACGGCCGGTTT............... 24 4 2.50 0.00 0.00 0.00 2.50 ............................................................TATTGCACTTGAGACGGCCCGA................. 22 4 2.25 2.25 0.00 0.00 0.00 ............................................................TATTGCACTTGAGACGGCC.................... 19 4 2.25 0.25 0.00 0.00 2.00 ............................................................TATTGCACTTGAGACGGCCGTTT................ 23 4 2.00 0.00 0.00 0.00 2.00 ............................................................TATTGCACTTGAGACGGCCCG.................. 21 4 1.75 1.75 0.00 0.00 0.00 ............................................................TATTGCACTTGATACGGCCGGA................. 22 4 1.50 1.00 0.25 0.00 0.25 ............................................................TATTGCACTTGAGACGGCCT................... 20 4 1.25 0.00 0.25 0.00 1.00 ............................................................TATTGCACTTGAGACGGCCTGA................. 22 4 1.25 0.75 0.00 0.00 0.50 ............................................................TATTGCACTTGAGACGGCCGGATA............... 24 4 1.00 0.25 0.00 0.00 0.75 ............................................................TATTGCCCTTGAGACGGCCGGA................. 22 4 1.00 0.50 0.25 0.00 0.25 ............................................................TATTGCACTTGAGACGGCCGGTA................ 23 4 1.00 0.00 0.25 0.00 0.75 ............................................................TATTGCACTTGAGACGGCCGGG................. 22 4 1.00 1.00 0.00 0.00 0.00 ............................................................TATTGCACTTGAGACGGCCGTT................. 22 4 1.00 0.00 0.25 0.00 0.75 ............................................................TATTGCACTTGAGACTGCCGG.................. 21 4 0.75 0.50 0.00 0.00 0.25 ............................................................TATTGCACTTGAGACGGCCGGATT............... 24 4 0.75 0.25 0.00 0.00 0.50 ............................................................TATTGCACTTGAGACGGCCGGCA................ 23 4 0.75 0.75 0.00 0.00 0.00 ............................................................TATTGCACTTGAGACGGCCGGTG................ 23 4 0.75 0.00 0.00 0.00 0.75 ............................................................TATTGCACTTGAGACTGCCGGA................. 22 4 0.75 0.25 0.00 0.00 0.50 ............................................................TATTGCACTTGAGACGGCCGGGA................ 23 4 0.75 0.75 0.00 0.00 0.00 ............................................................TATTGCACTTGAGACGGCCGGC................. 22 4 0.75 0.50 0.25 0.00 0.00 ............................................................TATTGCACTTGAGACGGCCGA.................. 21 4 0.75 0.75 0.00 0.00 0.00 ............................................................TATTGCACTTGAGACGGCCGAA................. 22 4 0.75 0.75 0.00 0.00 0.00 ............................................................TATTGCACTTGATACGGCCGGAA................ 23 4 0.75 0.75 0.00 0.00 0.00 ............................................................TATTGCACTTGAGACGGCCGTA................. 22 4 0.75 0.50 0.00 0.00 0.25 ............................................................TATTGCACTTGAGACGGCCGGAAT............... 24 4 0.75 0.75 0.00 0.00 0.00 ............................................................TATTGCACTTGAGACCGCCGGA................. 22 4 0.75 0.50 0.00 0.00 0.25

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000454039:1776269-1776366 -	61.73	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAG-GGCAATTCTGCAT----TTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC AAACCAATTTCGAGTGTTTCGG-TCGTCTTGGGTGGCAATACTAAATTAACTTTATGGCTAGCATTGCACTTGAGACGGCCGAAATGCTTTAAATTTA--T Size Hit Count Total Norm

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000409474:1490038-1490133 +	63.95	AATT-AAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAA-ACGAATC AAATAAAATTTCTAGTATTTCGGTTCGCCTTTTGTGCAATTTTAGAGTCAATA--GAAAATTGCACTTCAGACGGCCGGATGACTTGAAATACAAAAC Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302291:2816211-2816324 +	50.19	AATTAAG----TTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACG---------------AATC ATATAGGCATATTTTTGGCGTTTCGGTCCGTCCCAGGAGCAATCCTGTATTT-CCGACTAGAATTGCACTTGAGACGGCCGGAGTGCTTGAAAACAAGGAAAGTGCATAGAAACT Size Hit Count Total Norm

droTak1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000415401:99973-100067 -	75.49	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAA-ACGAATC AAC-ATATTTCTGGTGTTCCGGTCCGTCTCAGGCGCAATTCTGAATT-TTCACCTAGTATTGCACTTGAGACGGCCGGAATACTTTAAATACGAAAC Size Hit Count Total Norm
2	scf7180000415401:99840-99943 -	43.16	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTT---------------AAAACGAATC CTGTAATTTACATG--TCGCGGGCGGTGACAATGCGAGTTA-----TGTTTATTACGTATTGCACTGGCCCCGGCCTATAAACTTCGGCTATAAACAGCAAAAAATAATTC Size Hit Count Total Norm

droEle1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000491201:736234-736328 -	68.03	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC TACTAA-TTTCTGGTGTTTCGGTACGTCTATGGGGCAATTCTGCGTTTTCTGGTTAGCATTGCACTTGAGACGGCCGCAACACTTTGGAATAAAAA Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000780104:82286-82421 -	36.59	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTT--TTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAA--------------ACGA------------------------ATC GAACAAATTTCTGGTGTTTCGGCTCGTCTCAAAAGCAATTCTTCGTTTTTCTTGGCTAGCATTGCACTTGAGACGGCCGCAATACTTTGGATTTAAAACATTTAAGCAAGTTTATTGAAAAAGTTATTTTTGCATT Size Hit Count Total Norm

droKik1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000302471:941817-941912 -	54.06	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC AGCTCCGGCCGTAAAGGTCTGTGCTGTTTGAGGTGCAAATCTGTGGTTAATAGCCAGAATTGCACTTGAAACGGCCAGATCAAGGCGGCCCAAAAC Size Hit Count Total Norm

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_13266:4132676-4132765 +	61.2	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTT-AACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAACGAATC TCTACAATTT-------TCCGGTGCGTCTCTAGTGCAACTCTTGGTTTTTTATACAAGTATTGCACTTGAGACGGCCGAAATATAGTGGATCTAAGC Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ..........................................................TATTGCACTTGAGACGGCCGA.................. 21 2 1519.50 194.00 10.00 24.00 1291.50 ..........................................................TATTGCACTTGAGACGGCCGAAA................ 23 2 687.50 53.00 4.00 6.50 624.00 ...................CGGTGCGTCTCTAGTGCAACT......................................................... 21 2 570.00 3.50 1.00 0.50 565.00 ..........................................................TATTGCACTTGAGACGGCCGAA................. 22 2 507.00 131.00 3.00 13.00 360.00 ..........................................................TATTGCACTTGAGACGGCCGAAAA............... 24 2 380.50 10.50 0.00 3.00 367.00 ..........................................................TATTGCACTTGAGACGGCCG................... 20 2 330.50 72.50 4.50 7.50 246.00 ..........................................................TATTGCACTTGAGACGGCCGAAAAA.............. 25 2 69.00 1.50 0.50 0.00 67.00 ..........................................................TATTGCACTTGAGACGGCCGAAT................ 23 2 51.00 21.00 0.00 2.50 27.50 ..........................................................TATTGCACTTGAGACGGCCCA.................. 21 2 34.00 0.00 0.00 0.00 34.00 ..........................................................TATTGCACTTGAGACGGCCGAT................. 22 2 32.50 15.00 1.00 1.50 15.00 ..........................................................TATTGCACTTGAGACGGCCGCAA................ 23 2 29.00 0.00 0.00 0.00 29.00 ..........................................................TATTGCACTTGAGACGGCCGCA................. 22 2 28.50 0.50 0.00 0.50 27.50 ..........................................................TATTGCACTTGAGACGGCCGT.................. 21 2 24.50 9.50 1.50 1.00 12.50 ..........................................................TATTGCACTTGAGACGGCCGC.................. 21 2 23.50 0.00 0.00 0.50 23.00 ..........................................................TATTGCACTTGAGACGGCCGAAAAAA............. 26 2 22.00 0.50 0.00 0.00 21.50 ..........................................................TATTGCACTTTAGACGGCCGA.................. 21 2 21.50 1.50 0.00 0.00 20.00 ...........................CTCTAGTGCAGATCTTGGT................................................... 19 2 21.00 10.00 4.00 6.00 1.00 ...................CGGTGCGTCTCTAGTGCAACTCT....................................................... 23 2 18.00 12.50 3.50 2.00 0.00 ..........................................................TATTGCACTTGATACGGCCGA.................. 21 2 17.00 2.00 0.00 0.00 15.00 ..........................................................TATTGCACTTGAGACGTCCGA.................. 21 2 17.00 1.50 0.00 0.50 15.00 ..........................................................TATTGCACTTGAGACGGCCGG.................. 21 2 16.50 0.50 0.00 0.50 15.50 ..........................................................TATTGCACTTGAGACGGCC.................... 19 2 16.00 2.00 0.00 0.50 13.50 ..........................................................TATTGCACTTGAGACGGCCGATA................ 23 2 15.50 4.50 0.50 0.00 10.50 ...................CGGTGCGTCTCTAGTGCAAC.......................................................... 20 2 15.50 0.00 0.00 0.00 15.50 ..........................................................TATTGCACTTGAGACGGCCGACA................ 23 2 15.00 0.00 0.00 0.00 15.00 ..........................................................TATTGCACTTGAGACGGCCGGA................. 22 2 14.50 0.00 0.00 0.50 14.00 ..........................................................TATTGCACTTGAGACGGCCGGAA................ 23 2 13.00 0.00 0.00 0.00 13.00 ..........................................................TATTGCACTTGAGACGGCCCAA................. 22 2 12.00 0.00 0.00 0.00 12.00 ..........................................................TATTGCACTTGAGACGGCCGCAAA............... 24 2 12.00 0.00 0.00 0.00 12.00 ...................CGGTGCGTCTCTAGTGCAACTC........................................................ 22 2 11.50 2.50 0.00 1.50 7.50 ..........................................................TATTGCACTTGAGACGGCCCAAA................ 23 2 11.00 0.00 0.00 0.00 11.00 ...................CGGTGCGTCTCTAGTGCCACT......................................................... 21 2 11.00 0.00 0.00 0.00 11.00 ..........................................................TATTGCACTTGAGACGGCCGACAA............... 24 2 10.50 0.00 0.00 0.00 10.50 ..........................................................TATTGCACTTGAGACTGCCGA.................. 21 2 10.00 1.00 0.00 0.50 8.50 ..........................................................TATTGCACTTGAGACGGCCGATT................ 23 2 10.00 8.00 0.50 0.50 1.00 ..........................................................TATTGCACTTGAGACGGCCGAAAT............... 24 2 9.50 2.00 0.00 0.50 7.00 ...................CGGTGCGTCTCTAGTTCAACT......................................................... 21 2 9.00 0.00 0.00 0.00 9.00 ..........................................................TATTGCACTTGAGACGGCCGAAG................ 23 2 9.00 0.50 0.00 0.50 8.00 ..........................................................TATTGCACTTGAGACGGCCGAAC................ 23 2 9.00 1.00 0.00 0.00 8.00 ..........................................................TATTGCACTTGAGACGGCCTA.................. 21 2 8.00 0.50 0.00 0.00 7.50 ..........................................................TATTGCACTTGAGACGGCCGAG................. 22 2 7.50 2.00 0.50 0.50 4.50 ..........................................................TATTGCACTTGCGACGGCCGA.................. 21 2 7.50 1.00 0.00 0.00 6.50 ..........................................................TATTGCACTTGAGACTGCCGAAA................ 23 2 7.00 0.00 0.00 0.00 7.00 ..........................................................TATTGCACTTGAGACGGCCGGAAA............... 24 2 7.00 0.00 0.00 0.00 7.00 ..........................................................TATTGCACTTGAGACCGCCGA.................. 21 2 7.00 0.50 0.00 0.00 6.50 ..........................................................TATTGCACTTGAGACGGCCGAAAC............... 24 2 7.00 0.50 0.50 0.00 6.00 ...........................................................ATTGCACTTGAGACGGCCGA.................. 20 2 6.50 1.50 0.00 0.50 4.50 ..........................................................TATTGCACTTGAGACGGCCGAAAAAAA............ 27 2 6.50 0.00 0.50 0.00 6.00 ..........................................................TATTGCACTTGATACGGCCGAAA................ 23 2 6.50 0.00 0.00 0.00 6.50 ...................CGGTGCGTCTCTACTGCAACT......................................................... 21 2 6.00 0.00 0.00 0.00 6.00 ..........................................................TATTGCACTTGAGACGTCCGAAA................ 23 2 6.00 0.00 0.00 0.00 6.00 ...................CGGGGCGTCTCTAGTGCAACT......................................................... 21 2 6.00 0.00 0.00 0.50 5.50 ..........................................................TATTGCACTTGAGACTGCCGAA................. 22 2 6.00 1.00 0.00 0.00 5.00 ............................TCTAGTGCAGATCTTGGT................................................... 18 2 6.00 1.50 3.00 1.50 0.00 ..........................................................TATTGCACTTTAGACGGCCGAAAA............... 24 2 6.00 0.00 0.00 0.00 6.00 ..........................................................TATTGCACTTGAGACGGCCGAC................. 22 2 5.50 0.00 0.00 0.00 5.50 ...................CGGTGCGTCTCTATTGCAACT......................................................... 21 2 5.50 0.00 0.00 0.00 5.50 ..........................................................TATTGCACTTGAGACGGCCT................... 20 2 5.50 2.00 0.50 0.00 3.00 ..........................................................TATTGCACTTCAGACGGCCGA.................. 21 2 5.50 0.00 0.00 0.00 5.50 ...................CGGTGCGTCTCTAGCGCAACT......................................................... 21 2 5.50 0.00 0.00 0.00 5.50 ..........................................................TATTGCACTTGCGACGGCCGAAA................ 23 2 5.00 0.50 0.00 0.00 4.50 ..........................................................TATTGCACTTGAGACGGCCGTAA................ 23 2 5.00 1.00 0.00 0.00 4.00 ..........................................................TATTTCACTTGAGACGGCCGA.................. 21 2 5.00 1.00 0.00 0.00 4.00 ..........................................................TATTGCACTTGAGACGGGCGA.................. 21 2 4.50 0.00 0.00 0.00 4.50 ..........................................................TATTGCACTTGAGACGGACGA.................. 21 2 4.50 2.00 0.00 0.00 2.50 ..........................................................TATTGCACTTGATACGGCCGAA................. 22 2 4.50 0.00 0.00 0.00 4.50 ..........................................................TATTGCACTTTAGACGGCCGAAA................ 23 2 4.50 0.00 0.00 0.00 4.50 ..........................................................TATTGCACTTGACACGGCCGA.................. 21 2 4.50 1.00 0.00 0.00 3.50 ..........................................................TATTGCACTTGAGACGGCCCAAAA............... 24 2 4.50 0.00 0.00 0.00 4.50 ..........................................................TATTGCACTTGAGACGTCCG................... 20 2 4.50 0.50 0.00 0.00 4.00 ..........................................................TATTGCACTTGAGACAGCCGA.................. 21 2 4.00 0.00 0.00 0.00 4.00 ..........................................................TAGTGCACTTGAGACGGCCGA.................. 21 2 4.00 0.00 0.00 0.50 3.50 ..........................................................TATTGCACTTGATACGGCCG................... 20 2 4.00 0.50 0.00 0.00 3.50 ...................CGGTGCGTCTCTCGTGCAACT......................................................... 21 2 4.00 0.00 0.00 0.00 4.00 ..........................................................TATTGCACTTGAGCCGGCCGA.................. 21 2 4.00 0.00 0.00 0.00 4.00 ..........................................................TATTGCACTTGAGACGACCGA.................. 21 2 4.00 0.00 0.00 0.00 4.00 ..........................................................TATTGCACTTGAGACGGCCGAAACA.............. 25 2 4.00 0.00 0.00 0.00 4.00 ..........................................................TATTGCACTTGAGACGGCCTAAA................ 23 2 4.00 0.00 0.00 0.00 4.00 ..........................................................CATTGCACTTGAGACGGCCGA.................. 21 2 4.00 1.00 0.00 0.00 3.00 ..........................................................TATTGCACTTGATACGGCCGAAAA............... 24 2 4.00 0.00 0.00 0.00 4.00 ..........................................................TATTGCGCTTGAGACGGCCGA.................. 21 2 3.50 0.50 0.00 0.00 3.00 ..........................................................TATTGCACTTGCGACGGCCGAA................. 22 2 3.50 1.00 0.00 0.00 2.50 ..........................................................TATTGCACTTGAGACTGCCG................... 20 2 3.50 0.00 0.00 0.00 3.50 ..........................................................TATTGCACTTGAGACGTCCGAA................. 22 2 3.50 0.50 0.00 0.00 3.00 ..........................................................TATTGCACTTGATACGTCCGAAA................ 23 2 3.50 0.00 0.00 0.00 3.50 ..........................................................TATTGCACTTGAGACGGCCGTAAA............... 24 2 3.50 0.00 0.00 0.00 3.50 ..........................................................TATTGCACTTGAGACGGCCTAA................. 22 2 3.50 0.00 0.00 0.00 3.50 ..........................................................TATTGCACTTGAGACGGCCGAACA............... 24 2 3.50 0.00 0.00 0.00 3.50 ..........................................................TATTGCACTTTAGACGGCCGAA................. 22 2 3.50 0.50 0.00 0.00 3.00 ...................CGGCGCGTCTCTAGTGCAACT......................................................... 21 2 3.50 0.00 0.00 0.00 3.50 ...................CGGTGCGTCTCTAGTGCAACTCTA...................................................... 24 2 3.50 3.00 0.00 0.50 0.00 ..........................................................TATTGCACTTGAGACGCCCGA.................. 21 2 3.50 0.00 0.00 0.00 3.50 ..........................................................TATTGCACTTGAGACGGCCGCAT................ 23 2 3.00 0.00 0.00 0.00 3.00 ..........................................................TATTGCACTTGAGACCGCCGAAA................ 23 2 3.00 0.50 0.00 0.00 2.50 ..........................................................TATTGCACTTGAGACGGCCGAAAAT.............. 25 2 3.00 0.50 0.00 0.00 2.50 ..........................................................TATTGCACTTGAGACGGACGAA................. 22 2 3.00 3.00 0.00 0.00 0.00 ..........................................................TATTGCACTTGAGACGTCCGAAAA............... 24 2 3.00 0.00 0.00 0.00 3.00 ..........................................................TATTGCACTTGAGACGCCCGAAA................ 23 2 3.00 0.00 0.00 0.00 3.00 ..........................................................TATTGCACTTGACACGGCCGAAA................ 23 2 3.00 0.00 0.00 0.00 3.00 ..........................................................TATTGCACTTGAGACGGCCGTA................. 22 2 3.00 0.00 0.00 0.50 2.50 ..........................................................TATTGCACTCGAGACGGCCGA.................. 21 2 3.00 0.50 0.00 0.00 2.50

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000396427:2575386-2575498 +	47.11	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCT-GCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTA----------------CTTTAAAACGAATC ATTTATGTCTACAATTTTCGGGGTCATCTCCAGTGCAAATCTTGGTTTTTCCAACAAGAATTGCACTCGAGACGGCCAGAATATTGTGGATCTATGCAGCTACAAGCCGAAAG Size Hit Count Total Norm

dp4 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	chr3:8679756-8679828 +	43.62	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATT--TTTTAACTAGTATTGCACTTGAGACGGCCTGATT--ACTTTAAAACGAATC----- --------------------------------GGGCAATACTGTGTTGTATTTCACCAGTATTGCACACCCACTGGCCTGAAAGTGCCTACTGCTGGGTTCAACA Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ...........................................................TATTGCACACCCACTGGCCTGA........................ 22 3 346.33 69.00 247.33 26.67 3.33 ...........................................................TATTGCACACCCACTGGCCTG......................... 21 3 183.33 36.67 33.33 19.67 93.67 ...........................................................TATTGCACACCCACTGGCCTGT........................ 22 3 25.00 16.00 3.67 4.00 1.33 ...........................................................TATTGCACACCCACTGGCCTGAA....................... 23 3 19.67 2.00 16.67 1.00 0.00 ...........................................................TATTGCACACCCACTGGCCT.......................... 20 3 10.00 4.00 3.33 1.67 1.00 ...........................................................TATTGCACACCCACTGGCCTGTC....................... 23 3 5.00 4.00 0.00 0.67 0.33 ...........................................................TATTGCACACCCACTGGCCTGTT....................... 23 3 2.67 1.33 0.00 1.00 0.33 ...........................................................TATTGCACACCCACTGGCCTGC........................ 22 3 2.33 0.33 1.67 0.00 0.33 ...........................................................TATTGCACACCCACTGGCCTGAAA...................... 24 3 2.33 0.00 2.33 0.00 0.00 ...........................................................TATTGCACACCCCCTGGCCTGA........................ 22 3 1.67 0.00 1.67 0.00 0.00 ...........................................................TATTGCACACCCTCTGGCCTGA........................ 22 3 1.67 0.00 1.67 0.00 0.00 ...........................................................TATTGCACACCCACTGGCC........................... 19 3 1.67 0.00 0.33 0.33 1.00 ...........................................................TATTGCACACCCACTGGCCTT......................... 21 3 1.67 0.67 0.33 0.00 0.67 ...........................................................TATTGCACACCCAATGGCCTGA........................ 22 3 1.33 0.00 1.33 0.00 0.00 ...........................................................TATTGCACACCCACTAGCCTGA........................ 22 3 1.33 0.00 1.33 0.00 0.00 ...........................................................TATTGCACACCCACTGGCCTGAT....................... 23 3 1.33 0.67 0.00 0.67 0.00 ...........................................................TATTGCACACCCACTTGCCTGA........................ 22 3 1.33 1.00 0.33 0.00 0.00 ...........................................................TATTGCACACCCACTGGCCTAA........................ 22 3 1.00 0.00 0.33 0.67 0.00 ...........................................................TACTGCACACCCACTGGCCTGA........................ 22 3 1.00 0.00 0.67 0.33 0.00 ...........................................................TATTGCACACCCACTGGCCCGA........................ 22 3 1.00 0.33 0.67 0.00 0.00 ...........................................................TATTGCACACCCACTGGCCTGAG....................... 23 3 1.00 0.67 0.33 0.00 0.00 ..........................................................GTATTGCACACCCACTGGCC........................... 20 3 1.00 0.67 0.00 0.33 0.00 ...........................................................TATTGCACACCCACTGGCATGA........................ 22 3 1.00 0.67 0.33 0.00 0.00 ...........................................................TATTGCACACTCACTGGCCTGA........................ 22 3 1.00 0.00 1.00 0.00 0.00

droPer1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_4:2566584-2566654 +	33.43	AATTAAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTT-AAAACGAATC ATTAGTG-TACAAGCGGAAGGGTGCATCG---------AGCTGCT----TTGATTTGTA------------GGCCGTGGTTCTTGCAAATACGAAT- Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo ..........................................................A------------GGCCGTGGTTCTTGCAAATA...... 21 3 1.00 0.67 0.33 0.00 0.00 0.00 ..........................................................A------------GGCCGTGGTTCTTGCAAAT....... 20 3 1.00 0.67 0.33 0.00 0.00 0.00 ..........................................................A------------GGCCGTGGTTCTTGCAAATACG.... 23 3 0.33 0.00 0.33 0.00 0.00 0.00 ..........................................................A------------GGCCGTGGTTCTTGCAAATACGT... 24 3 0.33 0.33 0.00 0.00 0.00 0.00

droWil1 - 0 hit found

droVir3 - 1 hit found