dme-mir-309- 12- and 20-way alignments

dme-mir-309	chr2R:15549211-15549279 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 15549215-15549236
   star strand at position 15549252-15549273
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:15549196-15549294 -	AAG-----TTT--GGAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACG--ACGACC
droSim1	chr2R:14254629-14254727 -	AAG-----TTT--GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACG--ACGACC
droSec1	super_1:13063923-13064021 -	AAG-----TTT--GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACG--ACGACC
droYak2	chr2R:13623487-13623590 +	AAGCAAAGTTT--GGAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCCA---------------ATTTCCT------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACG--ACGACC
droEre2	scaffold_4845:9749440-9749538 -	GAG-----TTT--GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------ATTTCCT------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACG--ACGACC
droAna3	scaffold_13266:9731102-9731197 +	AAG-----T-----GAAGA--TCATTATACGACAAACCTTGTTCGGTTTTGCCA---------------ATTTCCT------A--GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAGCCGTCC
dp4	chr3:12677873-12677965 -	C--------TC--GGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA---------------ACTTGCT------T--GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTAA-GCGATC
droPer1	super_2:8905701-8905793 +	C--------TC--GGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA---------------ACTTGCT------T--GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTAA-GCGATC
droWil1	scaffold_180701:1652063-1652171 -	T---------T--CATATAA--TATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCT------TA-GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAACT--ACAATC
droVir3	scaffold_12875:4111798-4111897 +	ATA-----T------AACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCCA---------------GGCTCTT-TTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAAG--AACAGC
droMoj3	scaffold_6496:20937105-20937211 -	TAT-----ATACAAGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCCG---------------GGTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCG--AAACGA-AACAGC
droGri2	scaffold_15112:2109128-2109233 -	AAA---AATAT--ATAATTA-C-ATTATATGGCAAACCTTGTTCAGTTTTGACA---------------ACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATCG-AAATGG--ATCAGC

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:15549196-15549294 -	NA	AA--------GT---TTG---GAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCA--------AGCCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--G--------------ACGACC
droSim1	chr2R:14254629-14254727 -	1	AA--------GT---TTG---GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCA--------AGCCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--G--------------ACGACC
droSec1	super_1:13063923-13064021 -	1	AA--------GT---TTG---GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCA--------AGCCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--G--------------ACGACC
droYak2	chr2R:13623487-13623590 +	1	AAGC---AAAGT---TTG---GAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCC----------------AATTTCCT--------AGCCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--G--------------ACGACC
droEre2	scaffold_4845:9749440-9749538 -	1	GA--------GT---TTG---GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCT--------AGCCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--G--------------ACGACC
droEug1	scf7180000409474:2396603-2396701 +	1	A---------GT---TCG---GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTGCT--------AGTCAGCACTGGGTAAAGTTTGTCCTATAATCCCGATAA--T--------------ACAACC
droBia1	scf7180000302143:3060087-3060184 -	2	CA--------GC---TCG---GGACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCT--------AG-CAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--G--------------ACGACC
droTak1	scf7180000415384:83792-83889 +	2	CA--------GT---TCG---GAACAG-TAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCT--------AG-CAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--G--------------ACGACC
droEle1	scf7180000491201:2014262-2014364 -	3	AG-C---A--AC---TCGAAGGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCT--------AG-CAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--G--------------ACGACC
droRho1	scf7180000780066:73396-73493 +	2	AA--------GC---TCG---GAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCA----------------AATTTCCT--------AG-CAGCACTGGGTAAAGTTTGTCCTATAATCTTGAAAA--G--------------ACGACC
droFic1	scf7180000454039:848303-848400 -	1	AA--------GC---TCC---GAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCT--------AG-CAGCACTGGGTAAAGTTTGTCCTATAATCTCGAGAA--G--------------ACGACC
droKik1	scf7180000302679:89661-89756 -	2	-----------T---TCG---GCAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCT--------AG-CAGCACTGGGTAAAGTTTGTCCTATAATCTCAAAAC--G--------------ACGACC
droAna3	scaffold_13266:9731105-9731197 +	1	GA---------------------AGA--TCATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCT--------AG-CAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAG--------------CCGTCC
droBip1	scf7180000396427:874084-874176 +	1	GA----------------------AAG-CCATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCT--------AG-CAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAATGA--------------ACGTCC
dp4	chr3:12677873-12677971 -	1	AA--------CTATCTCG---G---AA-CTATTATACGATAAACTTTGTTCAGTTTTGCC----------------AACTTGCT--------TG-CAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGT-AA--------------GCGATC
droPer1	super_2:8905688-8905793 +	1	AA-AAACGAACTATCTCG---GA---A-CTATTATACGATAAACTTTGTTCAGTTTTGCC----------------AACTTGCT--------TG-CAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGT-AA--------------GCGATC
droWil1	scaffold_180701:1652063-1652174 -	2	A----------T---TTC---ATATAA-T-ATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCTT--------AG-CATCACTGGGTGAAGTTTGTCTTATAATCTTTAAAC--T--------------ACAATC
droVir3	scaffold_12875:4111798-4111897 +	1	TA-------------------TAACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCC----------------AGGCTCTT-TTTGTG-CG-CATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAA--G--------------AACAGC
droMoj3	scaffold_6496:20937092-20937209 -	1	TA--------TA---CAA---GAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCC----------------GGGTTCTATGTTGTG-CG-CATCACTGGGTGAAGTTTGTCGTATAATCGA--AAC--GAAACAGCAAGGAAAAAGTCC
droGri2	scaffold_5621:2511-2611 +	1	AA--------AT---ATA---TAATTA-C-ATTATATGGCAAACCTTGTTCAGTTTTGAC----------------AACTTTGTTTCTGTGCAT-CATCACTGGGTGAAGTTTGTCGTATAATC--GAAAT--G----------------GATC

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AAG-----TTT--GGAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACG--ACGACC

Size

Hit Count

Total Norm

droSim1

AAG-----TTT--GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACG--ACGACC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
........................................................................................GCACTGGGTAAAGTTTGTCCTA.....................	22	1	979.00	974.00	1.00	0.00	4.00
........................................................................................GCACTGGGTAAAGTTTGTCCT......................	21	1	617.00	606.00	0.00	0.00	11.00
.............................CGACAAACCTTGTTCGGTTTTG................................................................................	22	1	401.00	20.00	1.00	0.00	380.00
........................................................................................GCACTGGGTAAAGTTTGTCC.......................	20	1	26.00	26.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAACGTTTGTCCTA.....................	22	1	11.00	11.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTC........................	19	1	10.00	10.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGCTTGTCCTA.....................	22	1	7.00	7.00	0.00	0.00	0.00
........................................................................................GCACTGGGTACAGTTTGTCCT......................	21	1	7.00	7.00	0.00	0.00	0.00
........................................................................................GCACTGGGTACAGTTTGTCCTA.....................	22	1	7.00	7.00	0.00	0.00	0.00
........................................................................................GCACTGGGCAAAGTTTGTCCTA.....................	22	1	6.00	6.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTCTCCTA.....................	22	1	6.00	6.00	0.00	0.00	0.00
.............................CGACAAACCTTGTTCGGTTTT.................................................................................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAACGTTTGTCCT......................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTAA....................	23	1	5.00	5.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTATCCTA.....................	22	1	4.00	4.00	0.00	0.00	0.00
.............................CGACAAACCTTGTTCGGTTTTGT...............................................................................	23	1	4.00	2.00	0.00	0.00	2.00
........................................................................................GCACTGGGTCAAGTTTGTCCT......................	21	1	4.00	4.00	0.00	0.00	0.00
........................................................................................GCACTGGGCAAAGTTTGTCCT......................	21	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTACTA.....................	22	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGCTTGTCCT......................	21	1	3.00	2.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGTTTGTCCTT.....................	22	1	3.00	3.00	0.00	0.00	0.00
.............................CGACAAACCTTGTTCGGATTTG................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................GCACTGGGTAAAGTTTGCCCT......................	21	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGATTGTCCTA.....................	22	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTCAAGTTTGTCCTA.....................	22	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTAAA...................	24	1	3.00	3.00	0.00	0.00	0.00
......................................................................................CAGCACTGGGTAAAGTTTGTCCT......................	23	1	3.00	1.00	0.00	0.00	2.00
........................................................................................GCACTGGGTAAAGTTTTTCCTT.....................	22	1	3.00	3.00	0.00	0.00	0.00

droSec1

AAG-----TTT--GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACG--ACGACC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................................................GCACTGGGTAAAGTTTGTCCTA.....................	22	1	7778.00	5.00	7493.00	280.00
........................................................................................GCACTGGGTAAAGTTTGTCCT......................	21	1	2479.00	2.00	2371.00	106.00
........................................................................................GCACTGGGTAAAGTTTGTCC.......................	20	1	146.00	0.00	143.00	3.00
.............................CGACAAACCTTGTTCGGTTTTG................................................................................	22	1	104.00	0.00	103.00	1.00
........................................................................................GCACTGGGTAAAGTTTGTC........................	19	1	51.00	1.00	49.00	1.00
........................................................................................GCACTGGGTAAAGTTTGTCCTAA....................	23	1	33.00	0.00	32.00	1.00
........................................................................................GTACTGGGTAAAGTTTGTCCTA.....................	22	1	29.00	0.00	28.00	1.00
........................................................................................GCATTGGGTAAAGTTTGTCCTA.....................	22	1	27.00	0.00	27.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTAT....................	23	1	24.00	0.00	24.00	0.00
........................................................................................GCACTGGGTAAAGTTTGCCCTA.....................	22	1	16.00	0.00	15.00	1.00
........................................................................................GCACTGGGTAAAGTTTCTCCTA.....................	22	1	15.00	0.00	15.00	0.00
.......................................................................................AGCACTGGGTAAAGTTTGTCCT......................	22	1	12.00	0.00	12.00	0.00
........................................................................................GCGCTGGGTAAAGTTTGTCCTA.....................	22	1	12.00	0.00	11.00	1.00
..........................................................................................ACTGGGTAAAGTTTGTCCTA.....................	20	1	11.00	0.00	11.00	0.00
........................................................................................GCACTGGGCAAAGTTTGTCCTA.....................	22	1	11.00	0.00	11.00	0.00
........................................................................................GCACTGGGTAAAGCTTGTCCTA.....................	22	1	10.00	0.00	10.00	0.00
........................................................................................GCACTGGGTAAGGTTTGTCCTA.....................	22	1	10.00	0.00	9.00	1.00
........................................................................................GCACTGGGTAAAGTTTGTCCTAC....................	23	1	10.00	0.00	10.00	0.00
........................................................................................GCACTGGGTAAAGTTCGTCCTA.....................	22	1	10.00	0.00	8.00	2.00
........................................................................................GCACTGGGTAAAGTTTGTCTTA.....................	22	1	9.00	0.00	9.00	0.00
........................................................................................GCATTGGGTAAAGTTTGTCCT......................	21	1	9.00	0.00	9.00	0.00
........................................................................................GCACTGGGTAAAGTCTGTCCTA.....................	22	1	9.00	0.00	9.00	0.00
........................................................................................GCACTxGGTAAAGTTTGTCCTA.....................	21	1	8.00	0.00	8.00	0.00
.............................CGACAAACCTTGTTCGGTTTT.................................................................................	21	1	8.00	0.00	8.00	0.00
........................................................................................GCACCGGGTAAAGTTTGTCCTA.....................	22	1	8.00	0.00	8.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTACTA.....................	22	1	7.00	1.00	5.00	1.00
........................................................................................GCACTGGGTAAAGTTTGTCCTG.....................	22	1	7.00	0.00	7.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTAAA...................	24	1	7.00	0.00	7.00	0.00
........................................................................................GCACTGGGTAAAGxTTGTCCTA.....................	21	1	7.00	0.00	7.00	0.00
........................................................................................GCACTGGCTAAAGTTTGTCCTA.....................	22	1	7.00	0.00	7.00	0.00
........................................................................................GCACTGGGTAAAGTTTATCCTA.....................	22	1	7.00	0.00	7.00	0.00
........................................................................................CCACTGGGTAAAGTTTGTCCTA.....................	22	1	7.00	0.00	6.00	1.00
........................................................................................GCCCTGGGTAAAGTTTGTCCTA.....................	22	1	6.00	0.00	6.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTTCTA.....................	22	1	6.00	0.00	6.00	0.00
........................................................................................GCACTGGGTAGAGTTTGTCCTA.....................	22	1	6.00	0.00	6.00	0.00
........................................................................................GTACTGGGTAAAGTTTGTCCT......................	21	1	5.00	0.00	5.00	0.00
........................................................................................GCACTGGGTAAAGTTTTTCCTA.....................	22	1	5.00	0.00	5.00	0.00
........................................................................................GCACTGGGTAAAGxTTGTCCT......................	20	1	5.00	0.00	5.00	0.00
........................................................................................GCACTGGGTACAGTTTGTCCTA.....................	22	1	5.00	0.00	5.00	0.00
........................................................................................TCACTGGGTAAAGTTTGTCCT......................	21	1	5.00	0.00	5.00	0.00
........................................................................................GCACTGGGTAACGTTTGTCCTA.....................	22	1	5.00	0.00	5.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCCTA.....................	22	1	5.00	0.00	5.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCCT......................	21	1	5.00	0.00	5.00	0.00
........................................................................................GCACTGGGTAAAGTATGTCCTA.....................	22	1	5.00	0.00	5.00	0.00
........................................................................................GCGCTGGGTAAAGTTTGTCCT......................	21	1	5.00	0.00	5.00	0.00
........................................................................................GCACTGGGTxAAGTTTGTCCTA.....................	21	1	5.00	0.00	5.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCC......................	21	1	4.00	0.00	4.00	0.00
........................................................................................GCACTGGGTAAAGTTAGTCCTA.....................	22	1	4.00	0.00	4.00	0.00
........................................................................................GCTCTGGGTAAAGTTTGTCCTA.....................	22	1	4.00	0.00	4.00	0.00
........................................................................................GCAATGGGTAAAGTTTGTCCTA.....................	22	1	4.00	0.00	4.00	0.00
........................................................................................GCACTGGGCAAAGTTTGTCCT......................	21	1	4.00	0.00	4.00	0.00
.......................................................................................CGCACTGGGTAAAGTTTGTCCTA.....................	23	1	4.00	0.00	4.00	0.00
........................................................................................GCACTxGGTAAAGTTTGTCCT......................	20	1	4.00	0.00	4.00	0.00
........................................................................................GCACTGGGTAATGTTTGTCCTA.....................	22	1	4.00	0.00	3.00	1.00
........................................................................................GCACTGGGTAAAGTTCGTCCT......................	21	1	4.00	0.00	4.00	0.00
........................................................................................GCACTGGGTAAATTTTGTCCTA.....................	22	1	3.00	0.00	3.00	0.00
........................................................................................GCACTxxGTAAAGTTTGTCCTA.....................	20	1	3.00	0.00	2.00	1.00
........................................................................................GCACTGGGGAAAGTTTGTCCTA.....................	22	1	3.00	0.00	3.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCCA.....................	22	1	3.00	0.00	3.00	0.00
........................................................................................TCACTGGGTAAAGTTTGTCCTA.....................	22	1	3.00	0.00	3.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTT.....................	22	1	3.00	0.00	3.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTC.....................	22	1	3.00	0.00	3.00	0.00
..........................................................................................ACTGGGTAAAGTTTGTCCT......................	19	1	3.00	0.00	3.00	0.00
........................................................................................GCACTGGGTAAAGTTTGCCCT......................	21	1	3.00	0.00	3.00	0.00
........................................................................................GCACTGGGTAAAGTTGGTCCTA.....................	22	1	3.00	0.00	3.00	0.00
......................................................................................CAGCACTGGGTAAAGTTTGTCCT......................	23	1	3.00	0.00	3.00	0.00
........................................................................................ACACTGGGTAAAGTTTGTCCTA.....................	22	1	3.00	0.00	3.00	0.00
.......................................................................................AGCACTGGGTAAAGTTTGTCC.......................	21	1	3.00	0.00	3.00	0.00
........................................................................................GCACTGGGTAAAGTTTATCCT......................	21	1	3.00	0.00	3.00	0.00
........................................................................................GCACTGGGTAAAGATTGTCCTA.....................	22	1	3.00	0.00	3.00	0.00
.........................................................................................CACTGGGTAAAGTTTGTCCT......................	20	1	3.00	0.00	3.00	0.00
........................................................................................GCACTGGATAAAGTTTGTCCTA.....................	22	1	3.00	0.00	3.00	0.00
........................................................................................GCACTGGGTAAACTTTGTCCT......................	21	1	3.00	0.00	2.00	1.00

droYak2

AAGCAAAGTTT--GGAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCCA---------------ATTTCCT------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACG--ACGACC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................................................GCACTGGGTAAAGTTTGTCCTA.....................	22	1	419.00	418.00	0.00	0.00	1.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCT......................	21	1	182.00	180.00	0.00	0.00	2.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCC.......................	20	1	7.00	7.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTAA....................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGGAAAGTTTGTCCTA.....................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAGAGTTTGTCCTA.....................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTC........................	19	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAACGTTTGTCCTA.....................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTACTA.....................	22	1	2.00	2.00	0.00	0.00	0.00	0.00
........................................................................................GCCCTGGGTAAAGTTTGTCCTA.....................	22	1	2.00	2.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGCAAAGTTTGTCCTA.....................	22	1	2.00	2.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTACAGTTTGTCCTA.....................	22	1	2.00	2.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAGGTTTGTCCTA.....................	22	1	2.00	2.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAATTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGCCAAGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTACAGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................CCACTGGGTAAAGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCGCTGGGTAAAGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................ACTGGGTAAAGTTTGTCCTA.....................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GGACTGGGTAAAGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTTAAGCTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................................CGCACTGGGTAAAGTTTGTCCT......................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................................AGCACTGGGTAAAGTTTGTCCT......................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCAATGGGTAAAGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGCGTATAGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGTGTAAAGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GGACTGGGTAAAGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................CCACTGGGTAAAGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTC.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGAGTAAAGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGGTCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCC......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................ACACTGGGTAAAGTTTGTTCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTAT....................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................GCACGGGGTTAAGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCCCTGGGTAACGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTCTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGATTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTCTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGATTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTxAAGTTTGTCCTA.....................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTACAGTTTGTCA.......................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCTTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.............................CGACAAACCTTGTTCTGTTTT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.............................CGACAAACCTTGTTCTGT....................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................................CGCACTGGGTAAAGTTTGTCCTA.....................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGGTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAGGTTTGTCCT......................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGGAATGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTT.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GAACTGGGTCAAGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GGACTGGGGAAAGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTCAAGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GAACTGAGTAAAGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGAAAAGATTGTC........................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTTTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACCGGGTAAAGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGCTAAAGTTTGTCCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTGCTA.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTG.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................GCACTGTGTAAAGTTTGTCCT......................	21	1	1.00	1.00	0.00	0.00	0.00	0.00

droEre2

GAG-----TTT--GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------ATTTCCT------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACG--ACGACC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................................................................................GCACTGGGTAAAGTTTGTCCTA.....................	22	1	385.00	384.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGTTTGTCCT......................	21	1	187.00	187.00	0.00	0.00	0.00
..........................................................................................ACTGGGTGAAGTTTGTCGTA.....................	20	1	20.00	0.00	0.00	20.00	0.00
........................................................................................GCACTGGGTAAAGTTTTTCCTA.....................	22	1	16.00	16.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCGTA.....................	22	1	7.00	0.00	0.00	7.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCCTA.....................	22	1	7.00	0.00	0.00	7.00	0.00
.............................CGACAAACCTTGTTCGGTTTTG................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCC.......................	20	1	6.00	6.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTTTCCT......................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGGTTGTCCTA.....................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTC.....................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTC........................	19	1	4.00	4.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCCTA.....................	22	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTTGGTAAAGTTTGTCCTA.....................	22	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGATTTTCCTA.....................	22	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTA.....................	22	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAATTTTGTCCT......................	21	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTT......................	21	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAGGTTTGTCCTA.....................	22	1	3.00	2.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAACGTTTGTCCTA.....................	22	1	3.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTCAAGTTTGTCCT......................	21	1	3.00	3.00	0.00	0.00	0.00

droAna3

AAG-----T-----GAAGA--TCATTATACGACAAACCTTGTTCGGTTTTGCCA---------------ATTTCCT------A--GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAGCCGTCC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................................................................GCACTGGGTAAAGTTTGTCCTA.....................	22	1	91.00	2.00	5.00	10.00	74.00
........................................................................................GCACTGGGTAAAGTTTGTCCT......................	21	1	56.00	1.00	2.00	5.00	48.00
........................................................................................GCACTGGGTGAAGTTTGTCTTA.....................	22	1	10.00	0.00	0.00	0.00	10.00
........................................................................................GCACTGGGGAAAGTTTGTCCT......................	21	1	2.00	1.00	0.00	0.00	1.00
.......................................................................................AGCACTGGGTAAAGTTTGTCCT......................	22	1	2.00	0.00	0.00	1.00	1.00
........................................................................................GCACTGGGTAAAGTTTTTCCT......................	21	1	2.00	0.00	0.00	0.00	2.00
........................................................................................GCACTGGGTAAAGTTTGTCC.......................	20	1	2.00	0.00	0.00	0.00	2.00
........................................................................................GCACTGCGTAAAGTTTGTCCTA.....................	22	1	2.00	0.00	0.00	0.00	2.00
........................................................................................GCACTGGGTAAAGTTTGTCCTAT....................	23	1	2.00	0.00	0.00	0.00	2.00
........................................................................................GCACTGGGTAAAGTTTGTACTA.....................	22	1	2.00	0.00	0.00	1.00	1.00
........................................................................................GCACTGGGCAAAGTTTGTCCT......................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................GCACTGGGTAAAGTCTGTCCTA.....................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................ACACTGGGTAAAGTTTGTCTTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGCTAAAGTTTGTCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGTTTTTCCTC.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAGGTTTGTCCTAA....................	23	1	1.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAACGGTTGTCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGTTTATCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GAACTGGGTAAAGTTTGTCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTCGGTAAAGTTTGTCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGATAAAGTTTGTCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGATTGTCCT......................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGTTTCTCCTA.....................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................GCACTGCGTAAAGTTTGTCCT......................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAATTTTGTCCT......................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGCTTGTCCT......................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGTGTAAAGTTTCTCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................CCACTGGGTAAAGCTTGTCCT......................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................CCACTGGGTAAAGTTTATCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGTTTTTCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
................................CAAACCTTGTTCGGTTTTGC...............................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.............................CGACAAACCTTGTTCGGTTTTG................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................GCACTGGGGAAAGTTTCTCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGAAAAGTTTGTCCTA.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGTTTGTCAT......................	21	1	1.00	0.00	1.00	0.00	0.00
.............................CGACAAACCTTCTTCGGTTTTG................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTCAAGTTTGTCCTG.....................	22	1	1.00	0.00	0.00	0.00	1.00
.............................CGACAAACCTTGTTCGGTTTT.................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGTCAAAGTTTGTCCT......................	21	1	1.00	0.00	0.00	0.00	1.00
.............................CGACAAACCTTGTTCGGTTTTT................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGTTTGTCCTT.....................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAATGTTTGTCCT......................	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................AGCACTGGGTAAAGTTTGTCC.......................	21	1	1.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTAAAGTTTGTTCT......................	21	1	1.00	0.00	0.00	0.00	1.00

dp4

C--------TC--GGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA---------------ACTTGCT------T--GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTAA-GCGATC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................................GCACTGGGTGAAGTTTGTCTTA.....................	22	1	1132.00	0.00	1132.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTT......................	21	1	160.00	1.00	159.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTAA....................	23	1	100.00	2.00	98.00	0.00	0.00
........................................................................................GCACTGGGTGCAGTTTGTCTTA.....................	22	1	18.00	0.00	18.00	0.00	0.00
........................................................................................GCACTGGGTGGAGTTTGTCTTA.....................	22	1	12.00	0.00	12.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTT.....................	22	1	9.00	0.00	9.00	0.00	0.00
.......................................................................................AGCACTGGGTGAAGTTTGTCTT......................	22	1	8.00	0.00	8.00	0.00	0.00
........................................................................................GCACTGGGCGAAGTTTGTCTTA.....................	22	1	7.00	0.00	7.00	0.00	0.00
.......................................................................................AGCACTGGGTGAAGTTTGTCTTA.....................	23	1	7.00	0.00	7.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTAC....................	23	1	6.00	0.00	6.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTAT....................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................................GCACTGGGAGAAGTTTGTCTTA.....................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................................................GAACTGGGTGAAGTTTGTCTTA.....................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................................................GCACTGGGTGTAGTTTGTCTTA.....................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTAAA...................	24	1	5.00	0.00	5.00	0.00	0.00
........................................................................................GCACTGGGTGAAGATTGTCTTA.....................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTG.....................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGCCTTA.....................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCT.......................	20	1	4.00	0.00	4.00	0.00	0.00
.............................CGATAAACTTTGTTCAGTTTTG................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGGCTTA.....................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCGTA.....................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................................................GCACTGGGTGACGTTTGTCTTA.....................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................................................GCACTGGGTGAAGCTTGTCTTA.....................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................................................GCATTGGGTGAAGTTTGTCTTA.....................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................AGCACTGGGTGAAGTTTGTCT.......................	21	1	3.00	0.00	3.00	0.00	0.00
........................................................................................GCAATGGGTGAAGTTTGTCTTA.....................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTCTGTCTTA.....................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................................................GCACTGGGTGAGGTTTGTCTTA.....................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................................................GCACTGGGGGAAGTTTGTCTTA.....................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................................................GCACCGGGTGAAGTTTGTCTTA.....................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................................................GCACTGGATGAAGTTTGTCTTA.....................	22	1	3.00	0.00	3.00	0.00	0.00

droPer1

C--------TC--GGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA---------------ACTTGCT------T--GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTAA-GCGATC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................................................................GCACTGGGTGAAGTTTGTCTTA.....................	22	1	197.00	1.00	171.00	0.00	10.00	15.00
........................................................................................GCACTGGGTGAAGTTTGTCTT......................	21	1	47.00	1.00	38.00	0.00	2.00	6.00
........................................................................................GCACTGGGTGAAGTTTGTCTTAA....................	23	1	21.00	1.00	18.00	0.00	2.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTA.....................	22	1	17.00	11.00	6.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCT......................	21	1	6.00	4.00	2.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCT.......................	20	1	5.00	0.00	2.00	0.00	2.00	1.00
.......................................................................................AGCACTGGGTGAAGTTTGTCTT......................	22	1	4.00	0.00	3.00	0.00	0.00	1.00
........................................................................................GCACTGGGTGCAGTTTGTCTTA.....................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTT.....................	22	1	2.00	0.00	2.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTAAA...................	24	1	2.00	0.00	2.00	0.00	0.00	0.00
........................................................................................GCAATGGGTGAAGTTTGTCTTA.....................	22	1	2.00	0.00	2.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTAT....................	23	1	2.00	0.00	1.00	0.00	1.00	0.00
.............................CGATAAACTTTGTTCAGTTTTG................................................................................	22	1	2.00	0.00	2.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGCTTGTCTTA.....................	22	1	2.00	0.00	1.00	0.00	1.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTATTA.....................	22	1	2.00	0.00	1.00	0.00	1.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTTT....................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................GCACTGGGAGAAGTTTGTCTTA.....................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................GCACTGGGTGCAGCTTGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTA......................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCC.......................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................GCACTGGGTGAAGTTTGTCCTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GAACTGGGTGAAGTTTGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTAGGTGAAGTTTGTCTTAA....................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGGTTGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGATTGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGTAGTTTGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTCGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGAGTGAAGTTTGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGCGAAGTTTGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAGGTTTGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTC........................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................................AGCACTGGGTGAAGTTTGTCT.......................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGTGGTTTGTCTT......................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGGCGTTTGTCTTA.....................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................AGCACTGGGTGAATTTTGTCTT......................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAA....................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGATGTTTGGCT.......................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTG.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGGCTTA.....................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCTTC.....................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................ACACTGGGTGAAGTTTGTCTT......................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................................................ACTGGGTGAAGTTTGTCTTA.....................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTAGGTGAAGTTTGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCACTGGGTAAAGTTTGTCCTAT....................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................GCAATGGGTGCAGTTTGTCTTA.....................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................CGATAAACTTTGTTCAGTTTT.................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00

droWil1

T---------T--CATATAA--TATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCT------TA-GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAACT--ACAATC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................................................TCACTGGGTGAAGTTTGTCTTA.....................	22	1	12751.00	0.00	12735.00	15.00	1.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAA....................	23	1	3475.00	0.00	3470.00	5.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTT......................	21	1	1165.00	0.00	1165.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAAA...................	24	1	450.00	0.00	449.00	1.00	0.00
..........................................................................................ACTGGGTGAAGTTTGTCTTA.....................	20	1	91.00	0.00	91.00	0.00	0.00
........................................................................................TCACTGGGCGAAGTTTGTCTTA.....................	22	1	75.00	0.00	75.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAT....................	23	1	71.00	0.00	71.00	0.00	0.00
.........................................................................CCT------TA-GCATCACTGGGTGAAG..............................	21	1	47.00	0.00	47.00	0.00	0.00
........................................................................................TCACTTGGTGAAGTTTGTCTTA.....................	22	1	42.00	0.00	42.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAAAA..................	25	1	38.00	0.00	38.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTT.....................	22	1	35.00	0.00	35.00	0.00	0.00
........................................................................................TCACTGTGTGAAGTTTGTCTTA.....................	22	1	27.00	0.00	27.00	0.00	0.00
..........................................................................................ACTGGGTGAAGTTTGTCTTAA....................	21	1	26.00	0.00	26.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGCCTTA.....................	22	1	23.00	0.00	23.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAC....................	23	1	23.00	0.00	23.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTTTCTTA.....................	22	1	22.00	0.00	22.00	0.00	0.00
........................................................................................TAACTGGGTGAAGTTTGTCTTA.....................	22	1	21.00	0.00	21.00	0.00	0.00
........................................................................................TCACTGGGTTAAGTTTGTCTTA.....................	22	1	21.00	0.00	21.00	0.00	0.00
..................................................................................TA-GCATCACTGGGTGAAGTTTG..........................	22	1	20.00	0.00	20.00	0.00	0.00
.........................................................................CCT------TA-GCATCACTGGGTGAAGT.............................	22	1	18.00	0.00	18.00	0.00	0.00
........................................................................................TCACTGGGGGAAGTTTGTCTTA.....................	22	1	18.00	0.00	18.00	0.00	0.00
........................................................................................TCACTGGGCGAAGTTTGTCTTAA....................	23	1	17.00	0.00	17.00	0.00	0.00
.........................................................................................CACTGGGTGAAGTTTGTCTTA.....................	21	1	15.00	0.00	15.00	0.00	0.00
........................................................................................TCACTGGGTGGAGTTTGTCTTA.....................	22	1	14.00	0.00	14.00	0.00	0.00
.............................TGATAAACTTTGTTCAGTTTT.................................................................................	21	1	14.00	0.00	14.00	0.00	0.00
........................................................................................TCACTxGGTGAAGTTTGTCTTA.....................	21	1	14.00	0.00	14.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTCTGTCTTA.....................	22	1	14.00	0.00	14.00	0.00	0.00
........................................................................................TCACTGGGTGAAGCTTGTCTTA.....................	22	1	14.00	0.00	14.00	0.00	0.00
........................................................................................TCGCTGGGTGAAGTTTGTCTTA.....................	22	1	14.00	0.00	14.00	0.00	0.00
........................................................................................TCACTAGGTGAAGTTTGTCTTA.....................	22	1	13.00	0.00	13.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTATTA.....................	22	1	13.00	0.00	13.00	0.00	0.00
........................................................................................TCACCGGGTGAAGTTTGTCTTA.....................	22	1	13.00	0.00	13.00	0.00	0.00
.................................AAACTTTGTTCAGTTTTGCAA.............................................................................	21	1	13.00	0.00	13.00	0.00	0.00
........................................................................................TCACTGGGTGAAGxTTGTCTTA.....................	21	1	13.00	0.00	13.00	0.00	0.00
........................................................................................TCACTGGGAGAAGTTTGTCTTA.....................	22	1	13.00	0.00	13.00	0.00	0.00
........................................................................................TCACTGGGCGAAGTTTGTCTT......................	21	1	12.00	0.00	12.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAG....................	23	1	12.00	0.00	12.00	0.00	0.00
........................................................................................TCACTGGGTGAATTTTGTCTTA.....................	22	1	12.00	0.00	12.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTG.....................	22	1	12.00	0.00	12.00	0.00	0.00
........................................................................................TCAATGGGTGAAGTTTGTCTTA.....................	22	1	12.00	0.00	12.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCCTA.....................	22	1	12.00	0.00	12.00	0.00	0.00
........................................................................................TCACTGGGTGAGGTTTGTCTTA.....................	22	1	12.00	0.00	12.00	0.00	0.00
.......................................................................................CTCACTGGGTGAAGTTTGTCTTA.....................	23	1	11.00	0.00	11.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAAT...................	24	1	10.00	0.00	10.00	0.00	0.00
..................................................................................TA-GCATCACTGGGTGAAGTTTGC.........................	23	1	10.00	0.00	10.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAAAAA.................	26	1	10.00	0.00	10.00	0.00	0.00
........................................................................................TCACTGTGTGAAGTTTGTCTTAA....................	23	1	10.00	0.00	10.00	0.00	0.00
........................................................................................CCACTGGGTGAAGTTTGTCTTA.....................	22	1	10.00	0.00	10.00	0.00	0.00
........................................................................................TAACTGGGTGAAGTTTGTCTTAA....................	23	1	9.00	0.00	9.00	0.00	0.00
........................................................................................TCACTGGGTGAAGCTTGTCTTAA....................	23	1	9.00	0.00	9.00	0.00	0.00
........................................................................................TCACTGGATGAAGTTTGTCTTA.....................	22	1	9.00	0.00	9.00	0.00	0.00
........................................................................................TCACTGGCTGAAGTTTGTCTTA.....................	22	1	9.00	0.00	9.00	0.00	0.00
........................................................................................TCACTTGGTGAAGTTTGTCTTAA....................	23	1	9.00	0.00	9.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTCTCTTA.....................	22	1	9.00	0.00	9.00	0.00	0.00
........................................................................................TCACTGGGTGCAGTTTGTCTTA.....................	22	1	9.00	0.00	9.00	0.00	0.00
........................................................................................TCCCTGGGTGAAGTTTGTCTTA.....................	22	1	8.00	0.00	8.00	0.00	0.00
.................................AAACTTTGTTCAGTTTTGCAAT............................................................................	22	1	8.00	0.00	8.00	0.00	0.00
........................................................................................TCACTGGGTTAAGTTTGTCTTAA....................	23	1	8.00	0.00	8.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTCA.....................	22	1	8.00	0.00	8.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCT.......................	20	1	8.00	0.00	8.00	0.00	0.00
........................................................................................TCACTGGGTGAACTTTGTCTTA.....................	22	1	8.00	0.00	8.00	0.00	0.00
........................................................................................TCACTGGGTAAAGTTTGTCTTA.....................	22	1	8.00	0.00	8.00	0.00	0.00
........................................................................................TCACTTGGTGAAGTTTGTCTT......................	21	1	8.00	0.00	8.00	0.00	0.00
........................................................................................TCACTGGTTGAAGTTTGTCTTA.....................	22	1	8.00	0.00	8.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTCGTCTTA.....................	22	1	8.00	0.00	8.00	0.00	0.00
..................................................................................TA-GCATCACTGGGTGAAGTTTGT.........................	23	1	8.00	0.00	8.00	0.00	0.00
..........................................................................................ACTGGGTGAAGTTTGTCTT......................	19	1	7.00	0.00	7.00	0.00	0.00
................................TAAACTTTGTTCAGTTTTGCAA.............................................................................	22	1	7.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGAGTGAAGTTTGTCTTA.....................	22	1	7.00	0.00	7.00	0.00	0.00
...........................................................................T------TA-GCATCACTGGGTGAAGTTTG..........................	23	1	7.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGGGTGACGTTTGTCTTA.....................	22	1	7.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCCTAA....................	23	1	7.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTA......................	21	1	7.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTAA.....................	22	1	7.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGGGTCAAGTTTGTCTTA.....................	22	1	7.00	0.00	7.00	0.00	0.00
........................................................................................TTACTGGGTGAAGTTTGTCTTA.....................	22	1	6.00	0.00	6.00	0.00	0.00
.........................................................................................CACTGGGTGAAGTTTGTCTTAA....................	22	1	6.00	0.00	6.00	0.00	0.00
........................................................................................TCACTGGGTGGAGTTTGTCTTAA....................	23	1	6.00	0.00	6.00	0.00	0.00
........................................................................................TCACTCGGTGAAGTTTGTCTTA.....................	22	1	6.00	0.00	6.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTATA...................	24	1	5.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGTTGAAGTTTGTCTTAA....................	23	1	5.00	0.00	5.00	0.00	0.00
.......................................................................................ATCACTGGGTGAAGTTTGTCT.......................	21	1	5.00	0.00	5.00	0.00	0.00
.......................................................................................CTCACTGGGTGAAGTTTGTCTTAA....................	24	1	5.00	0.00	5.00	0.00	0.00
........................................................................................TCCCTGGGTGAAGTTTGTCTTAA....................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................................TAACTGGGTGAAGTTTGTCTT......................	21	1	5.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTTTCTTAA....................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTGAGGTTTGTCTTAA....................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................................TCATTGGGTGAAGTTTGTCTTA.....................	22	1	5.00	0.00	5.00	0.00	0.00
.............................TGATAAACTTTGTTCAGTTTTG................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAAG...................	24	1	4.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTATTAA....................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................................TCACTAGGTGAAGTTTGTCTTAA....................	23	1	4.00	0.00	4.00	0.00	0.00
...........................................................................T------TA-GCATCACTGGGTGAAGTT............................	21	1	4.00	0.00	4.00	0.00	0.00
...........................................................................T------TA-GCATCACTGGGTGAAGTTTGT.........................	24	1	4.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTCGTCTTAA....................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTGTTA.....................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................................................TCTCTGGGTGAAGTTTGTCTTA.....................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTGAACTTTGTCTTAA....................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................................TCGCTGGGTGAAGTTTGTCTTAA....................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................................CCACTGGGTGAAGTTTGTCTTAA....................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................................TCACTxGGTGAAGTTTGTCTTAA....................	22	1	3.00	0.00	3.00	0.00	0.00

droVir3

ATA-----T------AACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCCA---------------GGCTCTT-TTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAAG--AACAGC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................................................................................TCACTGGGTGAAGTTTGTCGTA.....................	22	1	2951.00	3.00	1.00	2947.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCGTAA....................	23	1	297.00	0.00	0.00	295.00	2.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCGT......................	21	1	235.00	3.00	1.00	231.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTA.....................	22	1	38.00	0.00	0.00	38.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCGTC.....................	22	1	32.00	0.00	0.00	31.00	1.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCGTAAA...................	24	1	26.00	1.00	1.00	24.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCGTAT....................	23	1	24.00	0.00	0.00	24.00	0.00	0.00
..........................................................................................ACTGGGTGAAGTTTGTCGTA.....................	20	1	20.00	0.00	0.00	20.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTTTCGTA.....................	22	1	20.00	0.00	0.00	20.00	0.00	0.00
........................................................................................TCACTGGGTGCAGTTTGTCGTA.....................	22	1	18.00	0.00	0.00	18.00	0.00	0.00
........................................................................................TCACTGGGCGAAGTTTGTCGTA.....................	22	1	17.00	0.00	0.00	17.00	0.00	0.00
........................................................................................TCACTGGGTGAAGGTTGTCGTA.....................	22	1	13.00	0.00	0.00	13.00	0.00	0.00
........................................................................................TCACTGGGGGAAGTTTGTCGTA.....................	22	1	13.00	0.00	0.00	13.00	0.00	0.00
........................................................................................TCACTGGGTGACGTTTGTCGTA.....................	22	1	12.00	0.00	0.00	12.00	0.00	0.00
........................................................................................TCACTGGGTGAGGTTTGTCGTA.....................	22	1	12.00	0.00	0.00	12.00	0.00	0.00
........................................................................................TCACTGGGTTAAGTTTGTCGTA.....................	22	1	11.00	0.00	0.00	11.00	0.00	0.00
........................................................................................TCACTGTGTGAAGTTTGTCGTA.....................	22	1	10.00	0.00	0.00	10.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGGCGTA.....................	22	1	10.00	0.00	0.00	10.00	0.00	0.00
........................................................................................TCACTAGGTGAAGTTTGTCGTA.....................	22	1	10.00	0.00	0.00	10.00	0.00	0.00
........................................................................................TCACTGGGTGAAGCTTGTCGTA.....................	22	1	9.00	0.00	0.00	9.00	0.00	0.00
........................................................................................TCACTGGGTGAATTTTGTCGTA.....................	22	1	9.00	0.00	0.00	9.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCGGA.....................	22	1	8.00	0.00	0.00	8.00	0.00	0.00
........................................................................................TCACTTGGTGAAGTTTGTCGTA.....................	22	1	8.00	0.00	0.00	8.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTTTCTTA.....................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGGTTGAAGTTTGTCGTA.....................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCGTG.....................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................GCACTGGGTGAAGTTTGTCGTA.....................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCCTA.....................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCG.......................	20	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................................TCACTGGGTGTAGTTTGTCGTA.....................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
....................................................................................................GTTTGTTATATAATCGCAAA...........	20	1	7.00	0.00	0.00	6.00	1.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCGCA.....................	22	1	6.00	0.00	0.00	6.00	0.00	0.00
........................................................................................TCACTGGGTGGAGTTTGTCGTA.....................	22	1	6.00	0.00	0.00	6.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTCTCGTA.....................	22	1	6.00	0.00	0.00	6.00	0.00	0.00
.......................................................................................CTCACTGGGTGAAGTTTGTCGTA.....................	23	1	5.00	0.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTAGTA.....................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGCCGTA.....................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTGAACTTTGTCGTA.....................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCTTAA....................	23	1	5.00	0.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTTTCGT......................	21	1	5.00	0.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTGAAGATTGTCGTA.....................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTCAAGTTTGTCGTA.....................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGCGAAGTTTGGCGTA.....................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
........................................................................................TCACTGGGTTAAGTTTGTCGT......................	21	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCATA.....................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................................CCACTGGGTGAAGTTTGTCGTA.....................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTGTCGTCA....................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGAGTGAAGTTTGTCGTA.....................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTCGTCGTA.....................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................................TCCCTGGGTGAAGTTTGTCGTA.....................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTTTCGTAA....................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTTTATCGTA.....................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGTTAAGTTTGTCTTA.....................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................................TCACTGGGCGAAGTTTGTCGTAA....................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................................TCACTGGGTGAAGTGTGTCGTA.....................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
.......................................................................................ATCACTGGGTGAAGTTTGTCGT......................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................................TCACTGGGTGAAGGTTGGCGTA.....................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................................TCACTGGGTGAATTTTGTCGTAA....................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................................TCACTGGGTGGAGGTTGTCGTA.....................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
....................................................................................................GTTTGTTATATAATCGCA.............	18	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................................TCGCTGGGTGAAGTTTGTCGTA.....................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................................TCACTGGGTGCAGTTTGTCGTC.....................	22	1	3.00	0.00	0.00	3.00	0.00	0.00

droMoj3

TAT-----ATACAAGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCCG---------------GGTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCG--AAACGA-AACAGC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................................................TCACTGGGTGAAGTTTGTCGTA.....................	22	1	2359.00	4.00	3.00	3.00	2349.00
........................................................................................TCACTGGGTGAAGTTTGTCGT......................	21	1	300.00	5.00	2.00	2.00	291.00
........................................................................................TCACTGGGTGAAGTTTGTCGTAA....................	23	1	163.00	1.00	0.00	0.00	162.00
........................................................................................TCACTGGGTGAAGTTTGTCGTC.....................	22	1	41.00	0.00	0.00	1.00	40.00
..........................................................................................ACTGGGTGAAGTTTGTCGTA.....................	20	1	30.00	0.00	0.00	0.00	30.00
........................................................................................TCACTGGGTGAAGTTTGTCG.......................	20	1	30.00	0.00	1.00	1.00	28.00
........................................................................................TCACTGGGTGAAGTTTGTCGTAT....................	23	1	20.00	0.00	0.00	0.00	20.00
........................................................................................TCACTGGGTGCAGTTTGTCGTA.....................	22	1	17.00	0.00	1.00	0.00	16.00
........................................................................................TCACTGGGTGACGTTTGTCGTA.....................	22	1	14.00	0.00	0.00	0.00	14.00
........................................................................................GCACTGGGTGAAGTTTGTCTTA.....................	22	1	12.00	0.00	0.00	0.00	12.00
........................................................................................TCACTGGGTGAAGTTTGCCGTA.....................	22	1	9.00	0.00	0.00	0.00	9.00
........................................................................................TCACTGGGTGAAGTTTGTCGTAAA...................	24	1	9.00	0.00	0.00	0.00	9.00
........................................................................................TCACTGGGTGAAGCTTGTCGTA.....................	22	1	7.00	0.00	0.00	0.00	7.00
........................................................................................TCACTGGGTGTAGTTTGTCGTA.....................	22	1	7.00	0.00	0.00	0.00	7.00
........................................................................................TCACTGGGCGAAGTTTGTCGTA.....................	22	1	7.00	0.00	0.00	0.00	7.00
........................................................................................TCACTGGGTGATGTTTGTCGTA.....................	22	1	6.00	0.00	0.00	0.00	6.00
........................................................................................TCACTGGGGGAAGTTTGTCGTA.....................	22	1	6.00	0.00	0.00	0.00	6.00
........................................................................................TCACTGGGTGAGGTTTGTCGTA.....................	22	1	5.00	0.00	0.00	0.00	5.00
...................................................CCG---------------GGTTCTATGTTGTGC-GCA...........................................	21	1	5.00	0.00	0.00	0.00	5.00
........................................................................................TCACTGGGTGAAGTTTGTCGTT.....................	22	1	5.00	0.00	0.00	0.00	5.00
........................................................................................TCACTGGGTGAAGTTTGTCGTG.....................	22	1	4.00	0.00	0.00	0.00	4.00
........................................................................................TCACTGGGTGAAGGTTGTCGTA.....................	22	1	4.00	0.00	0.00	0.00	4.00
........................................................................................TAACTGGGTGAAGTTTGTCGTA.....................	22	1	4.00	0.00	0.00	0.00	4.00
........................................................................................TCACTGGGTGAAGTTTGTTGTA.....................	22	1	4.00	0.00	0.00	0.00	4.00
........................................................................................TCACTGGGTGGAGTTTGTCGTA.....................	22	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................ACTGGGTGAAGTTTGTCGT......................	19	1	4.00	0.00	0.00	0.00	4.00
........................................................................................TCACTGGGTGCAGTTTGTCGT......................	21	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCACTGGGTGAAGTTTGTCGCA.....................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCACTGAGTGAAGTTTGTCGTA.....................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................CTCACTGGGTGAAGTTTGTCGTA.....................	23	1	3.00	0.00	0.00	0.00	3.00
.............................AGGTAAACTTTGTTCAGTTTTG................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCACTGGGTGTAGTTTGGCGTA.....................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCACTGGGAGAAGTTTGTCGTA.....................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCACTGGATGAAGTTTGTCGTA.....................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCACTGGGTGAAGTTTGTCGTAG....................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCACTGGGTGAAGTTTGTCGTCA....................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCACTAGGTGAAGTTTGTCGTA.....................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCACTGGGTGAAGTTTGTCGGA.....................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCACTGGGTGAAGTTTGTCTTA.....................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TCGCTGGGTGAAGTTTGTCGTA.....................	22	1	3.00	0.00	0.00	0.00	3.00

droGri2

AAA---AATAT--ATAATTA-C-ATTATATGGCAAACCTTGTTCAGTTTTGACA---------------ACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATCG-AAATGG--ATCAGC

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image