dme-mir-307a- 12- and 20-way alignments

dme-mir-307a	chr2R:5508756-5508843 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 5508766-5508788
   star strand at position 5508811-5508831
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:5508741-5508858 -	AAGTTAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droSim1	chr2R:4140609-4140726 -	AAGTTAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACAAAGC
droSec1	super_1:3126041-3126158 -	AAGTTAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAGC
droYak2	chr2L:18140631-18140748 -	AAGTTAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droEre2	scaffold_4929:8848869-8848986 +	AAGTTAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droAna3	scaffold_13266:12795467-12795585 -	AAGTTAG--CAGCCTTTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACAAGAC
dp4	chr3:14135687-14135806 -	AAGTTCGGGTCGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC
droPer1	super_4:1183061-1183180 +	AAGTTCGGGTCGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC
droWil1	scaffold_180701:3433650-3433767 -	AACTTAA--CA-CA-TTTTGCCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTTATAATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGT
droVir3	scaffold_12875:5789441-5789555 -	AACCGAA-----CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTAGTT-CGATTTGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAGTATCCACTAAGC
droMoj3	scaffold_6496:24271668-24271782 +	ttgTttG-----tt-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATTCGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC
droGri2	scaffold_15112:722943-723056 -	ttCT-----AAACA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATTTGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAA-GA

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:5508741-5508858 -	NA	AAGTTAG--CAG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droSim1	chr2R:4140609-4140726 -	1	AAGTTAG--CAG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACAAAGC
droSec1	super_1:3126041-3126158 -	1	AAGTTAG--CAG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAGC
droYak2	chr2L:18140631-18140748 -	3	AAGTTAG--CAG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droEre2	scaffold_4929:8848869-8848986 +	1	AAGTTAG--CAG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droEug1	scf7180000409209:654058-654175 +	1	AAGTTAG--CAG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droBia1	scf7180000301506:1211778-1211895 +	1	AAGTTAG--CAG-------CC-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droTak1	scf7180000415866:192891-193008 +	1	AAGTTAG--CAT-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droEle1	scf7180000491107:1596303-1596420 +	1	AAGTTAG--CAG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACAAATC
droRho1	scf7180000777217:399444-399561 -	1	AAGTTAG--CAG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droFic1	scf7180000453858:1204370-1204487 +	1	GGGGCTA--GAG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTACCCACGGATC
droKik1	scf7180000302476:911423-911540 -	1	GAGTTAG--CCG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droAna3	scaffold_13266:12795467-12795585 -	1	AAGTTAG--CAG-------CCTTTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACAAGAC
droBip1	scf7180000396730:1128124-1128242 +	3	AAGTTAG--CCG-------CCTTTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACAAGAC
dp4	chr3:14135687-14135806 -	1	AAGTTCGGGTCG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC
droPer1	super_4:1183061-1183180 +	1	AAGTTCGGGTCG-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC
droWil1	scaffold_180701:3433650-3433765 -	2	---TTAA--CA--------CA-TTTTGCCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTTATAATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGT
droVir3	scaffold_12875:5789441-5789560 -	2	AAATAAACCGAA-------CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTAGTT-CGATTTGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAGTATCCACTAAGC
droMoj3	scaffold_6496:24271667-24271782 +	3	AAACTA----AG-------AA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATTCGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC
droGri2	scaffold_15112:722942-723066 -	2	AAAATAA--AAGAACTAAACA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATTTGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAGAA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AAGTTAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC

Size

Hit Count

Total Norm

droSim1

AAGTTAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACAAAGC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	1699.50	0.00	1673.50	17.50	8.50
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	891.50	25.00	855.50	6.50	4.50
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	199.50	0.00	194.50	3.50	1.50
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	165.50	0.50	162.00	2.00	1.00
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	164.50	20.50	141.50	1.50	1.00
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	108.00	40.50	60.00	1.50	6.00
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	100.00	0.00	96.50	3.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	70.50	5.50	61.50	1.50	2.00
...........................................................................CACAACCTCCTTGAGTGAG............................	19	2	62.00	0.00	61.00	0.00	1.00
..........................................................................TCACAACCTCCTTGAGTGAGCGG.........................	23	2	37.00	0.00	35.00	0.50	1.50
..............................ACTCACTCAACCTGGGTGTG........................................................................	20	2	36.50	0.00	36.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	35.50	0.50	30.50	0.50	4.00
...............................................................................ACCTCCTTGAGTGAGCGT.........................	18	2	28.50	0.00	28.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTG..............................	18	2	19.50	0.00	19.50	0.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	18.00	0.00	17.00	0.00	1.00
............................................................................ACAACCTCCTTGAGTGAGCGT.........................	21	2	17.50	0.00	17.50	0.00	0.00
...........................................................................CACAGCCTCCTTGAGTGAGCG..........................	21	2	15.00	0.00	15.00	0.00	0.00
...........................................................................CACGACCTCCTTGAGTGAGCG..........................	21	2	14.50	0.00	14.00	0.50	0.00
...........................................................................CACAACCTCCTTGAGGGAGCG..........................	21	2	14.00	0.00	14.00	0.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGG.........................	22	2	12.00	0.00	10.50	0.00	1.50
..........................................................................TCACAACCTCCTTGAGTGAC............................	20	2	10.00	0.00	10.00	0.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	10.00	3.00	6.50	0.00	0.50
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	9.50	0.00	9.00	0.50	0.00
..........................................................................TCACAACCTCCTTGAGTGATCGT.........................	23	2	8.50	0.00	8.00	0.00	0.50
..........................................................................TCACAACCTCCTTGAGTGAGCGAC........................	24	2	8.00	0.00	8.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGT...........................	21	2	8.00	0.00	8.00	0.00	0.00
..............................ACTCACTCAACCTGGGTGTGA.......................................................................	21	2	7.00	0.50	6.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	6.50	0.00	5.50	0.50	0.50
...........................................................................CACAACCTCCTTGATTGAGCG..........................	21	2	5.50	0.00	4.50	0.00	1.00
.............................GACTCACTCAACCTGGGTGTG........................................................................	21	2	5.50	0.00	5.50	0.00	0.00
...........................................................................CACAACCTCCTTGAGAGAGCG..........................	21	2	5.00	0.00	5.00	0.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCGAT........................	22	2	4.50	1.50	2.50	0.00	0.50
..........................................................................TCACAACCTCCTTGAGTGA.............................	19	2	4.50	0.00	4.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTTAGCGT.........................	23	2	4.00	0.00	4.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGGC...........................	21	2	3.50	0.00	3.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGGGAGC...........................	21	2	3.50	0.00	3.50	0.00	0.00
..............................ACTCACTCAACCTGGGTGTGAT......................................................................	22	2	3.50	1.50	2.00	0.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGTG..........................	21	2	3.00	0.00	3.00	0.00	0.00
...........................................................................CACAACCTCCTTGAGTGGGCG..........................	21	2	3.00	0.00	3.00	0.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCA..........................	21	2	3.00	0.00	3.00	0.00	0.00
...........................................................................CACAACCCCCTTGAGTGAGCG..........................	21	2	2.50	0.00	2.50	0.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCC..........................	21	2	2.50	0.00	2.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGA...........................	21	2	2.50	0.50	2.00	0.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	2.50	1.00	1.50	0.00	0.00
...............................................................................ACCTCCTTGAGTGAGCGG.........................	18	2	2.50	0.00	2.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATCGG.........................	23	2	2.50	0.00	2.50	0.00	0.00
..............................ACTCACTCAACCTGGGTG..........................................................................	18	2	2.50	0.00	2.50	0.00	0.00
...........................................................................CACAACCTCCTTTAGTGAGCG..........................	21	2	2.50	0.00	2.50	0.00	0.00
...........................................................................CACAACCTCCTTCAGTGAGCG..........................	21	2	2.50	0.00	2.50	0.00	0.00
..........................................................................TCACAACCTCCTTGACTGAGC...........................	21	2	2.50	0.00	2.50	0.00	0.00
..........................................................................TCACAACCTCCTTGATTGAGC...........................	21	2	2.00	0.00	2.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAGC...........................	21	2	2.00	0.00	2.00	0.00	0.00
............................................................................ACAACCTCCTTGAGTGAGC...........................	19	2	2.00	0.50	1.50	0.00	0.00
...........................................................................CACAACCTCCTTGAGTTAGCG..........................	21	2	2.00	0.00	1.00	0.00	1.00
..........................................................................TCACAACCTCCTTGAGTCAGCGT.........................	23	2	2.00	0.00	2.00	0.00	0.00
...........................................................................CACAACCTCCTTGGGTGAGCG..........................	21	2	2.00	0.00	2.00	0.00	0.00
..............................ACTCACTCAACCTGGGTGTGT.......................................................................	21	2	2.00	0.00	2.00	0.00	0.00
...........................................................................CACAACCTCCTTGAGCGAGCG..........................	21	2	2.00	0.00	2.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGTT........................	24	2	1.50	0.00	1.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTCAGCG..........................	22	2	1.50	0.00	1.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTTAGCGG.........................	23	2	1.50	0.00	1.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATCG..........................	22	2	1.50	0.00	1.50	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATCGA.........................	23	2	1.50	0.00	1.50	0.00	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGC...........................	21	2	1.50	0.00	1.50	0.00	0.00
..............................ACTCACTCAACCTGGGTGTGG.......................................................................	21	2	1.50	0.00	1.50	0.00	0.00
..........................................................................TCACAACCTCCTTCAGTGAG............................	20	2	1.50	0.00	1.50	0.00	0.00
..............................ACTCACTCAACCTGGGTGTGATG.....................................................................	23	2	1.50	0.50	1.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCA..........................	22	2	1.50	0.00	1.50	0.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCGG.........................	21	2	1.50	0.00	1.00	0.00	0.50
...........................................................................CACAACCTCCxTGAGTGAGCG..........................	20	2	1.50	0.00	1.50	0.00	0.00
...........................................................................CACAACCTCCTTGAGTGAC............................	19	2	1.50	0.00	1.50	0.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAC........................	23	2	1.50	0.00	1.50	0.00	0.00
............................................................................ACAACCTCCTTGAGTGATCGA.........................	21	2	1.50	0.00	1.50	0.00	0.00

droSec1

AAGTTAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAGC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	26428.00	252.00	120.00	26056.00
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	6609.00	639.50	221.50	5748.00
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	2969.00	465.00	816.50	1687.50
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	2877.50	40.00	8.00	2829.50
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	1978.50	39.50	6.00	1933.00
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	1178.50	106.50	16.50	1055.50
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	817.50	51.50	1.50	764.50
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	737.00	114.50	99.00	523.50
..........................................................................TCACAACCTCCTTGAGTGA.............................	19	2	447.00	0.50	2.50	444.00
............................................................................ACAACCTCCTTGAGTGAGC...........................	19	2	352.00	1.00	2.50	348.50
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	247.00	31.00	52.50	163.50
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	173.50	10.50	0.00	163.00
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	147.00	15.00	2.00	130.00
...........................................................................CACAACCTCCTTGAGTGAG............................	19	2	138.50	0.00	0.50	138.00
.............................GACTCACTCAACCTGGGTGT.........................................................................	20	2	101.50	3.00	0.50	98.00
..........................................................................TCACAGCCTCCTTGAGTGAGCG..........................	22	2	81.50	1.50	1.00	79.00
..........................................................................TCACAACCTCCTTGAGTGAGA...........................	21	2	80.00	0.00	1.00	79.00
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	74.50	13.50	11.50	49.50
...........................................................................CACAGCCTCCTTGAGTGAGCG..........................	21	2	61.00	1.50	0.00	59.50
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	56.50	12.00	8.50	36.00
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	49.00	4.00	1.00	44.00
..........................................................................TCACAAACTCCTTGAGTGAGC...........................	21	2	49.00	0.00	0.00	49.00
..............................ACTCACTCAACCTGGGTGT.........................................................................	19	2	48.50	0.00	1.00	47.50
..............................ACTCACTCAACCTGGGTGTGT.......................................................................	21	2	48.50	1.00	0.00	47.50
..........................................................................TCACAACCTCCTTGAGTGGGCG..........................	22	2	45.00	7.00	1.00	37.00
..........................................................................TCACAACCTCCTTGAGTGAGCGTT........................	24	2	41.50	3.50	0.00	38.00
..........................................................................TCACAACATCCTTGAGTGAGC...........................	21	2	41.00	0.00	0.50	40.50
..........................................................................TCACAACCTCCTTGAGTGAGCGAA........................	24	2	40.00	5.50	7.00	27.50
..........................................................................TCACAACCTCCTTGAGTGAAC...........................	21	2	39.50	0.00	0.00	39.50
..........................................................................TCACAACCTCCTTGAGTGGGC...........................	21	2	37.50	1.00	0.00	36.50
..........................................................................TCACAACCTCCTTGAGTTAGC...........................	21	2	36.50	0.00	0.00	36.50
..........................................................................TCACAGCCTCCTTGAGTGAGC...........................	21	2	35.50	0.50	0.50	34.50
..........................................................................TCACAACCTCCTTGAGTGACC...........................	21	2	34.50	0.00	0.00	34.50
..........................................................................TCACAACCTACTTGAGTGAGC...........................	21	2	34.50	0.00	0.50	34.00
..........................................................................TCACAACCTCCTTGAGTGATC...........................	21	2	33.50	0.50	0.00	33.00
..........................................................................TCGCAACCTCCTTGAGTGAGC...........................	21	2	32.50	1.50	0.50	30.50
..........................................................................TCACAACCTCCTTGAGTAAGC...........................	21	2	31.50	1.00	0.00	30.50
..........................................................................TCACAACCTCCTTGAGCGAGC...........................	21	2	30.00	0.00	0.00	30.00
............................................................................ACAACCTCCTTGAGTGAG............................	18	2	29.50	0.00	0.00	29.50
..........................................................................TAACAACCTCCTTGAGTGAGC...........................	21	2	29.00	0.00	0.00	29.00
..........................................................................CCACAACCTCCTTGAGTGAGC...........................	21	2	28.50	0.50	0.00	28.00
..........................................................................TCACAACCTCCTTGGGTGAGC...........................	21	2	28.00	0.00	0.00	28.00
..........................................................................TCACAGCCTCCTTGAGTGAGCGA.........................	23	2	28.00	1.00	2.50	24.50
..........................................................................TCACAACCTCCTTGATTGAGC...........................	21	2	26.00	0.00	0.00	26.00
.........................................................................CTCACAACCTCCTTGAGTGAGC...........................	22	2	25.50	0.00	0.00	25.50
..........................................................................TCACAACCTCCTTGAGTGAGT...........................	21	2	25.50	0.50	0.00	25.00
..........................................................................TCACAACCTCCTTGAGTCAGC...........................	21	2	24.50	1.00	0.00	23.50
..........................................................................TCACAACCCCCTTGAGTGAGC...........................	21	2	24.00	0.50	0.00	23.50
..........................................................................TCACAACCTCCTTGAGTGAGCA..........................	22	2	23.00	1.00	0.50	21.50
...........................................................................CACAGCCTCCTTGAGTGAGCGA.........................	22	2	23.00	2.00	0.50	20.50
..........................................................................TCAAAACCTCCTTGAGTGAGC...........................	21	2	22.00	0.00	0.00	22.00
..........................................................................TCACAACCTCCTTTAGTGAGC...........................	21	2	22.00	0.00	0.00	22.00
..........................................................................TCACGACCTCCTTGAGTGAGC...........................	21	2	22.00	0.00	0.50	21.50
............................................................................ACAACCTCCTTGAGTGAGCGT.........................	21	2	21.50	0.50	0.50	20.50
..........................................................................TCACAACCTCCTCGAGTGAGC...........................	21	2	20.50	0.50	0.00	20.00
..........................................................................ACACAACCTCCTTGAGTGAGC...........................	21	2	20.00	0.00	0.00	20.00
..........................................................................TCACAACCTCCTTGAGTGGGCGA.........................	23	2	20.00	1.50	4.50	14.00
..........................................................................TCACAACCTCCCTGAGTGAGC...........................	21	2	19.50	1.00	0.00	18.50
..........................................................................TCACAACCTCATTGAGTGAGC...........................	21	2	18.50	0.00	0.00	18.50
...........................................................................CACAACCTCCTTGAGTGAGCGAA........................	23	2	16.00	1.50	0.50	14.00
..........................................................................TCTCAACCTCCTTGAGTGAGC...........................	21	2	16.00	0.00	0.00	16.00
..............................ACTCACTCAACCTGGGTGTGA.......................................................................	21	2	15.50	0.50	0.50	14.50
..........................................................................TTACAACCTCCTTGAGTGAGC...........................	21	2	15.50	0.00	0.50	15.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAAA.......................	25	2	15.00	2.00	0.50	12.50
..........................................................................TCACAACCACCTTGAGTGAGC...........................	21	2	14.50	0.00	0.00	14.50
..........................................................................TCACAACCTCCTTAAGTGAGC...........................	21	2	13.50	0.00	0.00	13.50
..............................ACTCACTCAACCTGGGTGTGAT......................................................................	22	2	13.50	0.50	6.00	7.00
..........................................................................TCACxACCTCCTTGAGTGAGC...........................	20	2	13.50	0.00	0.50	13.00
..........................................................................TCACAACATCCTTGAGTGAGCG..........................	22	2	13.00	0.50	0.00	12.50
..........................................................................GCACAACCTCCTTGAGTGAGC...........................	21	2	13.00	0.00	0.00	13.00
..........................................................................TCACAACCTCTTTGAGTGAGC...........................	21	2	12.50	0.00	0.00	12.50
..........................................................................TCACAACCTCCTTGACTGAGC...........................	21	2	12.50	0.50	0.00	12.00
..........................................................................TCATAACCTCCTTGAGTGAGC...........................	21	2	12.00	0.00	0.00	12.00
..........................................................................TCACAAACTCCTTGAGTGAGCG..........................	22	2	11.50	0.00	0.00	11.50
..........................................................................TCACAACCTCCTTGAGTGCGC...........................	21	2	11.50	3.00	0.00	8.50
...........................................................................CACAACCTCCTTGAGTGA.............................	18	2	11.50	0.00	0.00	11.50
..........................................................................TCACAACCTCCTTGAATGAGC...........................	21	2	11.50	0.00	0.00	11.50
..........................................................................TCACAACCTCCTTGAGTGAGCGG.........................	23	2	11.50	0.50	2.50	8.50
..........................................................................TCACAACCCCCTTGAGTGAGCG..........................	22	2	11.50	1.50	0.00	10.00
..........................................................................TCACAACCTCCTTGAGTGCGCG..........................	22	2	11.50	7.50	1.00	3.00
..........................................................................TCACAATCTCCTTGAGTGAGC...........................	21	2	11.00	0.00	0.00	11.00
............................................................................ACAACCTCCTTGAGTGAGCGAT........................	22	2	11.00	0.50	3.50	7.00
..........................................................................TCACAACCTCCTTGAGTGAGCT..........................	22	2	10.50	0.50	0.00	10.00
..........................................................................TCACGACCTCCTTGAGTGAGCG..........................	22	2	10.00	2.00	0.50	7.50
..........................................................................TCACAACTTCCTTGAGTGAGC...........................	21	2	10.00	0.00	0.00	10.00
..........................................................................TCACAACCTTCTTGAGTGAGC...........................	21	2	9.50	0.00	0.00	9.50
..........................................................................TCACAACCTCCTTGAGTAAGCG..........................	22	2	9.00	0.50	0.00	8.50
...........................................................................CACAGCCTCCTTGAGTGAGC...........................	20	2	8.50	0.00	0.00	8.50
..........................................................................TCACAACCTCCTTCAGTGAGC...........................	21	2	8.00	0.00	0.00	8.00
..........................................................................TCACAACCTCCTTGAGCGAGCG..........................	22	2	8.00	1.50	1.50	5.00
..........................................................................TCACAACATCCTTGAGTGAG............................	20	2	8.00	0.00	0.00	8.00
..........................................................................TCACACCCTCCTTGAGTGAGC...........................	21	2	7.50	0.00	0.00	7.50
............................................................................ACAGCCTCCTTGAGTGAGCG..........................	20	2	7.50	0.00	0.00	7.50
..........................................................................TCACAACCTCCTTGAGTGATCG..........................	22	2	7.00	0.00	0.00	7.00
..........................................................................TCACAACCTCCTTGAGTGACCG..........................	22	2	7.00	1.50	0.00	5.50
..........................................................................TCACAACCTCCTTGAGTGTGCG..........................	22	2	7.00	4.00	0.00	3.00
..........................................................................TCACAACCTCCTTGGGTGAGCG..........................	22	2	7.00	1.50	0.00	5.50
..........................................................................TCACAACCTCCTTGAGTGAACG..........................	22	2	7.00	0.00	0.50	6.50
..........................................................................TCACAACCTCCTTGAGTGAGCC..........................	22	2	7.00	0.50	0.00	6.50
...........................................................................CACAACCTCCTTGAGTGAGCGC.........................	22	2	7.00	0.50	0.00	6.50
..........................................................................TCGCAACCTCCTTGAGTGAGCG..........................	22	2	7.00	0.50	0.00	6.50

droYak2

AAGTTAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	8662.50	11.00	2581.00	82.50	5836.50	151.50
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	7605.00	7.50	2242.50	155.00	5166.50	33.50
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	2431.50	37.00	696.50	127.50	1557.50	13.00
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	2307.00	0.00	724.00	14.00	1552.50	16.50
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	1598.00	0.50	367.50	26.50	953.50	250.00
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	969.00	0.00	259.50	9.50	689.00	11.00
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	921.50	5.50	241.00	26.50	634.00	14.50
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	888.50	0.00	241.00	15.00	598.00	34.50
..........................................................................TCACAACCTCCTTGCGTGAGCG..........................	22	2	298.50	0.00	36.50	2.00	260.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	264.50	3.50	63.50	8.00	187.50	2.00
..........................................................................TCACAACCTCCTTGAGTGA.............................	19	2	205.00	0.00	68.50	0.00	136.50	0.00
............................................................................ACAACCTCCTTGAGTGAGC...........................	19	2	133.00	0.00	38.50	1.00	93.50	0.00
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	121.00	0.00	29.00	1.50	90.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAGC...........................	21	2	120.50	0.00	13.00	0.00	107.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCGCG..........................	22	2	111.00	0.00	12.00	0.50	98.50	0.00
...........................................................................CACAACCTCCTTGAGTGAG............................	19	2	95.00	0.00	27.50	0.50	59.50	7.50
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	88.50	0.00	20.00	2.50	65.50	0.50
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	88.00	0.50	18.50	4.50	60.00	4.50
..........................................................................TCACAACCTCCTTGCGTGAG............................	20	2	78.50	0.00	8.50	0.00	70.00	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCGA.........................	23	2	78.50	0.00	12.00	1.00	65.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	69.00	1.50	14.00	2.50	42.00	9.00
..........................................................................TCACAACCTCCTTGAGTGCGC...........................	21	2	64.00	0.00	7.50	0.50	56.00	0.00
.............................GACTCACTCAACCTGGGTGT.........................................................................	20	2	58.50	0.00	20.50	0.50	37.50	0.00
..........................................................................TCACAACCTCCTTGAGCGAGC...........................	21	2	55.50	0.00	8.50	0.50	46.50	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCG..........................	22	2	55.50	0.00	12.50	0.00	43.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	50.00	0.00	4.00	0.50	44.50	1.00
..........................................................................TCACAACCTCCTTGAGTGATC...........................	21	2	46.00	0.00	9.50	0.00	36.50	0.00
..........................................................................TCACAACCTCCTTGAGTGATCG..........................	22	2	42.50	0.00	9.50	0.00	33.00	0.00
..........................................................................TCACAACCTCCTTGAGTTAGC...........................	21	2	41.50	0.00	14.00	0.00	27.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCG............................	20	2	39.00	0.00	3.50	0.00	35.50	0.00
...........................................................................CACAACCTCCTTGCGTGAGCG..........................	21	2	38.00	0.00	3.50	0.00	34.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAA........................	24	2	35.50	0.50	6.50	3.00	25.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGT...........................	21	2	35.50	0.00	9.50	0.50	25.00	0.50
..........................................................................TCACAACCTCCTTGGGTGAGCG..........................	22	2	35.00	0.00	7.50	0.00	27.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCGT.........................	23	2	33.50	0.00	3.50	0.00	30.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGA...........................	21	2	31.50	0.00	9.50	0.00	21.00	1.00
..........................................................................TCACAACCTCCTTGAGTGGGCG..........................	22	2	31.00	0.00	7.00	0.50	23.50	0.00
..............................ACTCACTCAACCTGGGTGT.........................................................................	19	2	31.00	0.00	14.00	0.00	17.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCT..........................	22	2	30.50	0.00	10.50	0.50	19.50	0.00
..........................................................................TCACAACCTCCTTGCGTGCGCG..........................	22	2	30.50	0.00	1.00	0.00	29.50	0.00
..........................................................................TCACAACCTCCGTGAGTGAGC...........................	21	2	30.00	0.00	4.00	0.00	26.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGTT........................	24	2	28.00	0.00	6.00	1.50	20.50	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGC...........................	21	2	26.50	0.00	7.50	0.00	19.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAGCG..........................	22	2	26.00	0.00	4.00	0.00	22.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGC.........................	22	2	25.50	0.00	1.00	0.50	24.00	0.00
..........................................................................TCACAACCTCCTTGTGTGAGCG..........................	22	2	25.00	0.00	1.50	0.00	23.50	0.00
...........................................................................CACAACCTCCTTGAGTGCGCG..........................	21	2	25.00	0.00	2.50	0.00	22.50	0.00
..........................................................................TCACAACCTCCTTGAGGGAGCG..........................	22	2	24.50	0.00	5.50	0.50	18.50	0.00
..........................................................................TCACAACCTCCTTGAGGGAGC...........................	21	2	24.00	0.00	1.50	0.00	22.50	0.00
...........................................................................CACAACCTCCTTGCGTGAGCGA.........................	22	2	23.00	0.00	2.00	0.00	21.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAGC...........................	21	2	23.00	0.00	3.50	0.00	19.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCGCGA.........................	23	2	22.00	0.00	2.00	0.00	20.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGGC...........................	21	2	21.00	0.00	3.00	0.00	17.00	1.00
..........................................................................TCACAACCTCCTTGAGTGACC...........................	21	2	20.50	0.00	5.50	0.00	15.00	0.00
..........................................................................TCACAACCTCCTTGAGTCAGC...........................	21	2	20.50	0.00	3.00	0.50	17.00	0.00
...........................................................................CACAACCTCCTTGAGCGAGCG..........................	21	2	20.50	0.00	1.50	0.00	19.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCA..........................	22	2	20.00	0.00	6.00	0.00	14.00	0.00
..........................................................................TAACAACCTCCTTGAGTGAGCG..........................	22	2	19.50	0.00	2.00	0.00	17.50	0.00
............................................................................ACAACCTCCTTGAGTGAGCGT.........................	21	2	19.50	0.00	3.50	0.50	13.00	2.50
..........................................................................TCACAGCCTCCTTGAGTGAGCG..........................	22	2	19.50	0.00	5.50	0.50	13.50	0.00
..........................................................................TCACAACCGCCTTGAGTGAGC...........................	21	2	19.50	0.00	2.50	0.00	17.00	0.00
..........................................................................TCACAACCTCCGTGAGTGAGCG..........................	22	2	19.00	0.00	3.00	0.00	16.00	0.00
............................................................................ACAACCTCCTTGAGTGAG............................	18	2	19.00	0.00	5.50	0.00	13.50	0.00
..........................................................................TCACAACCTCCTTGGGTGAGC...........................	21	2	19.00	0.00	4.00	0.00	15.00	0.00
..........................................................................TCACAACCTCCTTGAGTGTGCG..........................	22	2	18.50	0.00	1.00	0.00	17.50	0.00
..........................................................................TCACAACCTCCTTGAGTAAGC...........................	21	2	18.50	0.00	9.50	0.00	9.00	0.00
..........................................................................TCACGACCTCCTTGAGTGAGC...........................	21	2	18.50	0.00	5.00	0.00	13.50	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGC...........................	21	2	18.00	0.00	4.50	0.00	13.50	0.00
..........................................................................TCACAACCTCCCTGAGTGAGC...........................	21	2	17.50	0.00	5.50	0.00	12.00	0.00
..........................................................................CCACAACCTCCTTGAGTGAGC...........................	21	2	17.50	0.00	3.50	0.00	14.00	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGCG..........................	22	2	17.50	0.00	2.50	0.00	15.00	0.00
..........................................................................TCACAACCTCCTTAAGTGAGC...........................	21	2	17.00	0.00	6.50	0.00	10.50	0.00
..........................................................................TCACAACCTCCTTGAGTTAGCG..........................	22	2	17.00	0.00	8.50	0.00	8.50	0.00
..........................................................................TAACAACCTCCTTGAGTGAGC...........................	21	2	17.00	0.00	2.50	0.00	14.50	0.00
...........................................................................CACAACCTCCTTGCGTGAGC...........................	20	2	17.00	0.00	0.50	0.00	16.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAA........................	23	2	16.50	0.00	4.50	0.50	11.50	0.00
..............................ACTCACTCAACCTGGGTGTGAT......................................................................	22	2	16.50	1.50	5.50	0.00	8.00	1.50
..........................................................................TCACAAACTCCTTGAGTGAGC...........................	21	2	16.00	0.50	4.00	0.00	11.50	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCGA.........................	23	2	15.50	0.00	2.50	0.50	12.50	0.00
..........................................................................TCACAACCTCCTTGACTGAGC...........................	21	2	15.50	0.00	1.50	0.00	14.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGG............................	20	2	15.50	0.00	2.50	0.00	13.00	0.00
..........................................................................TCACAACCTCCTCGAGTGAGC...........................	21	2	15.00	0.00	2.50	0.00	12.50	0.00
..........................................................................TCACAAACTCCTTGAGTGAGCG..........................	22	2	15.00	0.00	4.00	0.00	11.00	0.00
..........................................................................TCACAACCTCCTTGATTGAGC...........................	21	2	14.00	0.00	2.00	0.50	10.00	1.50
..........................................................................CCACAACCTCCTTGAGTGAGCG..........................	22	2	14.00	0.00	3.50	0.50	10.00	0.00
..........................................................................ACACAACCTCCTTGAGTGAGC...........................	21	2	14.00	0.00	3.00	0.00	11.00	0.00
..........................................................................TCACAATCTCCTTGAGTGAGC...........................	21	2	13.50	0.00	2.50	0.00	11.00	0.00
..........................................................................TCACAACCGCCTTGAGTGAGCG..........................	22	2	13.50	0.00	1.00	0.00	12.50	0.00
..........................................................................TCACAACCTCCTTGAGTTAG............................	20	2	13.00	0.00	4.50	0.00	8.50	0.00
..........................................................................TCACAACCTCCCTGAGTGAGCG..........................	22	2	13.00	0.00	4.00	0.00	9.00	0.00
..........................................................................TCACAACCTCCTTTAGTGAGC...........................	21	2	13.00	0.00	5.00	0.00	7.00	1.00
..........................................................................TCACAACCTCCTTGAGTGAGTG..........................	22	2	12.50	0.00	2.50	0.00	10.00	0.00
..........................................................................TCACAACCTCCTTCAGTGAGC...........................	21	2	12.50	0.00	3.00	0.00	9.50	0.00
..............................ACTCACTCAACCTGGGTGTGA.......................................................................	21	2	12.50	0.00	4.00	0.00	8.00	0.50
..........................................................................TCACCACCTCCTTGAGTGAGC...........................	21	2	12.50	0.00	2.50	0.00	10.00	0.00
..............................ACTCACTCAACCTGGGTGTGT.......................................................................	21	2	12.50	0.00	4.50	0.00	7.50	0.50
..........................................................................TCACAACCTCCTTAAGTGAGCG..........................	22	2	12.00	0.00	7.00	0.00	5.00	0.00
..........................................................................TCACAACCTCCTCGAGTGAGCG..........................	22	2	12.00	0.00	3.50	0.00	8.50	0.00
..........................................................................TCACAACCTCCTTGAGTGACCG..........................	22	2	11.50	0.00	1.50	0.00	10.00	0.00
..........................................................................TCACAACCTCCTTGAATGAGC...........................	21	2	11.50	0.00	5.50	0.00	6.00	0.00
..........................................................................TCACACCCTCCTTGAGTGAGC...........................	21	2	11.50	0.00	1.00	0.00	10.50	0.00

droEre2

AAGTTAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	38107.50	21.00	3729.00	16.50	34341.00
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	9479.50	16.50	3586.00	18.50	5858.50
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	4929.50	0.00	857.00	0.00	4072.50
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	2617.50	33.00	1022.50	47.50	1514.50
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	2053.00	0.50	280.50	0.50	1771.50
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	1664.00	1.50	523.50	0.50	1138.50
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	1002.50	6.50	403.50	5.00	587.50
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	662.00	0.50	159.50	0.50	501.50
..........................................................................TCACAACCTCATTGAGTGAGC...........................	21	2	433.00	0.00	4.00	0.00	429.00
..........................................................................TCACAACCTCCTTGAGTGA.............................	19	2	407.00	0.00	52.50	0.00	354.50
..........................................................................TCACAACCTCCTTTAGTGAGC...........................	21	2	394.00	0.00	7.50	0.00	386.50
............................................................................ACAACCTCCTTGAGTGAGC...........................	19	2	394.00	0.00	33.50	0.00	360.50
..........................................................................TCACAACCTCCTTGAGTTAGC...........................	21	2	342.00	0.50	12.00	0.00	329.50
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	282.00	1.50	122.50	1.00	157.00
..........................................................................TAACAACCTCCTTGAGTGAGC...........................	21	2	251.50	0.00	3.00	0.00	248.50
..........................................................................TCACAACCTACTTGAGTGAGC...........................	21	2	223.00	0.00	2.00	0.00	221.00
..........................................................................TCACAACCTCCTTGAGTGATC...........................	21	2	217.50	0.50	18.50	0.00	198.50
..........................................................................TCACAACCTCCTTGAGTGAGA...........................	21	2	198.50	0.00	16.00	0.50	182.00
...........................................................................CACAACCTCCTTGAGTGAG............................	19	2	178.50	0.00	26.00	0.00	152.50
..........................................................................TCACAACATCCTTGAGTGAGC...........................	21	2	172.00	0.00	1.50	0.00	170.50
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	168.00	0.00	61.00	0.50	106.50
..........................................................................TCACAACCTCCTTGATTGAGC...........................	21	2	127.00	0.00	9.50	0.00	117.50
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	97.50	1.00	30.50	1.00	65.00
..........................................................................TCACAACCTCATTGAGTGAGCG..........................	22	2	92.50	0.00	3.50	0.00	89.00
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	91.50	0.00	16.50	0.00	75.00
..........................................................................TCACAACCTCCTTGCGTGAGCG..........................	22	2	90.50	1.00	85.00	0.50	4.00
..........................................................................TCACAACCTCCTTGAGTTAGCG..........................	22	2	87.50	0.00	8.50	0.50	78.50
..........................................................................TCAAAACCTCCTTGAGTGAGC...........................	21	2	83.50	0.00	0.00	0.00	83.50
..........................................................................TCACAAACTCCTTGAGTGAGC...........................	21	2	78.50	0.00	3.00	0.00	75.50
.............................GACTCACTCAACCTGGGTGT.........................................................................	20	2	73.50	0.50	9.00	0.00	64.00
..........................................................................TCACAACCTCCTTTAGTGAGCG..........................	22	2	66.50	0.00	4.50	0.00	62.00
..........................................................................TCACAACCTCCTTGAGCGAGC...........................	21	2	61.50	0.00	14.50	0.00	47.00
..........................................................................TCGCAACCTCCTTGAGTGAGC...........................	21	2	59.50	0.00	7.00	0.00	52.50
..........................................................................TCACAACCTCATTGAGTGAG............................	20	2	58.50	0.00	0.50	0.00	58.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	57.00	0.00	14.50	0.50	42.00
..........................................................................TCACAACCTCCTTGAGTGATCG..........................	22	2	56.00	0.00	17.00	0.00	39.00
..........................................................................TCACAACCTCCTTGAGTTAG............................	20	2	55.00	0.00	5.50	0.00	49.50
..........................................................................TAACAACCTCCTTGAGTGAGCG..........................	22	2	51.00	0.00	5.00	0.00	46.00
..........................................................................CCACAACCTCCTTGAGTGAGC...........................	21	2	48.50	0.00	3.50	0.00	45.00
..........................................................................TCACAACCTCCTTGAGTGAGCT..........................	22	2	47.00	0.00	11.50	0.00	35.50
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	46.50	0.50	16.50	0.50	29.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAA........................	24	2	46.50	0.00	11.50	0.00	35.00
..........................................................................TCACAACCTCCTCGAGTGAGC...........................	21	2	46.00	0.00	3.50	0.00	42.50
..........................................................................TCACAGCCTCCTTGAGTGAGC...........................	21	2	46.00	0.00	6.50	0.00	39.50
..........................................................................TCACAGCCTCCTTGAGTGAGCG..........................	22	2	44.50	0.00	9.50	0.00	35.00
..........................................................................TCACAACCTCCTTGAGTGGGC...........................	21	2	44.50	0.00	4.50	0.00	40.00
..........................................................................TCACAACCTCCTTTAGTGAG............................	20	2	44.00	0.00	1.50	0.00	42.50
..........................................................................TTACAACCTCCTTGAGTGAGC...........................	21	2	42.50	0.00	2.50	0.00	40.00
..........................................................................TCACAACCTCCTTGAGTCAGC...........................	21	2	42.00	0.00	4.50	0.00	37.50
..........................................................................TCCCAACCTCCTTGAGTGAGC...........................	21	2	41.50	0.00	0.50	0.00	41.00
..........................................................................TCACAACCTACTTGAGTGAGCG..........................	22	2	41.50	0.00	0.50	0.00	41.00
............................................................................ACAACCTCCTTGAGTGAG............................	18	2	41.00	0.00	10.00	0.00	31.00
..............................ACTCACTCAACCTGGGTGT.........................................................................	19	2	41.00	0.00	5.00	0.00	36.00
..........................................................................TCACAACCTCCCTGAGTGAGC...........................	21	2	40.50	0.00	4.50	0.00	36.00
..........................................................................TCACAACCTCCTTGGGTGAGC...........................	21	2	40.50	0.00	4.00	0.00	36.50
..........................................................................TCACAACCTCCTTGAGTGACC...........................	21	2	40.00	0.00	3.50	0.00	36.50
..........................................................................TCACGACCTCCTTGAGTGAGC...........................	21	2	39.50	0.00	4.00	0.00	35.50
..........................................................................TCACAACCTCCTTGAGTAAGC...........................	21	2	37.50	0.00	2.50	0.00	35.00
..........................................................................TCACAACCTCCTTGAGTGCGCG..........................	22	2	36.50	0.50	32.00	0.00	4.00
..........................................................................TCACAACCTCCTTGAGTGAGT...........................	21	2	36.50	0.00	11.00	0.00	25.50
..........................................................................TCACAACCCCCTTGAGTGAGC...........................	21	2	35.50	0.00	2.50	0.50	32.50
..............................ACTCACTCAACCTGGGTGTGAT......................................................................	22	2	35.50	0.00	9.00	0.00	26.50
..........................................................................TCACAACCTCCTTGAGTGAGCA..........................	22	2	34.50	0.00	17.00	0.00	17.50
..........................................................................TCACAACCTCCTTGAGTGCGC...........................	21	2	34.50	0.00	20.00	0.00	14.50
..........................................................................TCACAACCTCCTTGCGTGAGC...........................	21	2	34.00	0.00	21.00	0.00	13.00
..........................................................................TCACAACCTCTTTGAGTGAGC...........................	21	2	33.00	0.00	7.00	0.00	26.00
..........................................................................TCACAACATCCTTGAGTGAGCG..........................	22	2	32.50	0.00	2.00	0.00	30.50
..........................................................................TCACAACCTCCTTGAGTGAGAG..........................	22	2	32.00	0.00	8.50	0.00	23.50
.........................................................................CTCACAACCTCCTTGAGTGAGC...........................	22	2	31.50	0.00	3.50	0.00	28.00
..........................................................................TCACAACCTCCTTGACTGAGC...........................	21	2	31.00	0.00	4.50	0.00	26.50
..........................................................................TAACAACCTCCTTGAGTGAG............................	20	2	29.00	0.00	0.50	0.00	28.50
..........................................................................TCATAACCTCCTTGAGTGAGC...........................	21	2	29.00	0.00	1.00	0.00	28.00
..........................................................................TCACAACCTACTTGAGTGAG............................	20	2	28.50	0.00	0.50	0.00	28.00
..........................................................................TCACAACCTCCTTGAGTTAGCGA.........................	23	2	28.00	0.00	3.50	1.00	23.50
..........................................................................TCACAACCTCCTTGCGTGAGCGA.........................	23	2	27.50	1.00	23.50	1.00	2.00
..........................................................................TCACAACCTCCTTAAGTGAGC...........................	21	2	26.00	0.00	4.50	0.00	21.50
..........................................................................TCTCAACCTCCTTGAGTGAGC...........................	21	2	26.00	0.00	0.50	0.00	25.50
...........................................................................CACAACCTCCTTGAGTGAGCGAA........................	23	2	25.50	0.00	8.00	0.00	17.50
..........................................................................TCAGAACCTCCTTGAGTGAGC...........................	21	2	25.00	0.00	1.50	0.00	23.50
...........................................................................CACAACCTCATTGAGTGAGC...........................	20	2	25.00	0.00	0.50	0.00	24.50
..........................................................................TCACAACCTCCTTGAGTGAT............................	20	2	24.00	0.00	2.50	0.00	21.50
..............................ACTCACTCAACCTGGGTGTGT.......................................................................	21	2	24.00	0.00	4.00	0.00	20.00
..........................................................................TCACAACCTTCTTGAGTGAGC...........................	21	2	23.50	0.00	1.50	0.00	22.00
..........................................................................TCACCACCTCCTTGAGTGAGC...........................	21	2	23.00	0.00	1.50	0.00	21.50
..........................................................................TCACAACCTCCTTGAGCGAGCG..........................	22	2	22.00	0.00	14.50	0.00	7.50
..........................................................................TCACAACCTCCTTGATTGAGCG..........................	22	2	22.00	0.00	3.50	0.00	18.50
..........................................................................TCACAACATCCTTGAGTGAG............................	20	2	20.50	0.00	0.50	0.00	20.00
..........................................................................TCACAACCTCCTTGAGTGAGCGTT........................	24	2	20.00	0.00	5.50	0.00	14.50
..........................................................................TCACAATCTCCTTGAGTGAGC...........................	21	2	20.00	0.00	1.00	0.00	19.00
..........................................................................TCACAACCTCCTTGAGTGGGCG..........................	22	2	20.00	0.00	10.00	0.00	10.00
..........................................................................TCACAACCTCCTTGAGTGAGCC..........................	22	2	20.00	0.50	4.00	0.00	15.50
...........................................................................CACAACCTCCTTTAGTGAGC...........................	20	2	20.00	0.00	0.00	0.00	20.00
..........................................................................TCACAACCTCCTTGAGTGAGCGG.........................	23	2	19.50	0.00	1.50	0.00	18.00
..........................................................................TCACAACCTCCTTGAGGGAGC...........................	21	2	19.50	0.50	6.50	0.00	12.50
..........................................................................ACACAACCTCCTTGAGTGAGC...........................	21	2	19.00	0.00	3.50	0.00	15.50
...........................................................................AACAACCTCCTTGAGTGAGC...........................	20	2	19.00	0.00	1.00	0.00	18.00
..........................................................................TCACxACCTCCTTGAGTGAGC...........................	20	2	19.00	0.00	0.00	0.00	19.00
..........................................................................TCACAACCTCATTGAGTGAGCGA.........................	23	2	18.50	0.00	0.00	0.00	18.50
...........................................................................CACAACCTCCTTGAGTTAGCG..........................	21	2	18.50	0.00	1.00	0.00	17.50
...........................................................................CACAACCTCCTTGAGTTAGC...........................	20	2	18.50	0.00	0.00	0.00	18.50
...........................................................................CACAGCCTCCTTGAGTGAGCG..........................	21	2	18.50	0.00	0.50	0.00	18.00

droAna3

AAGTTAG--CAGCCTTTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACAAGAC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	58594.00	352.50	52456.00	5779.00	6.50
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	7267.50	766.00	2594.50	3905.00	2.00
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	5531.00	93.50	4046.00	1391.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	3058.50	756.50	739.50	1557.00	5.50
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	2477.00	78.00	1766.00	633.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	1263.00	147.00	397.00	719.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	1066.50	203.50	200.50	661.00	1.50
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	945.00	92.00	566.00	287.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATC...........................	21	2	902.50	2.50	866.00	34.00	0.00
..........................................................................TCACAACCTCCTTGAGTGA.............................	19	2	650.00	1.50	434.00	214.00	0.50
..........................................................................TCACAACCTCCTTGAGTGAGA...........................	21	2	649.50	3.50	622.50	23.50	0.00
..........................................................................TCACAACCTACTTGAGTGAGC...........................	21	2	303.00	0.00	291.00	12.00	0.00
..........................................................................TCACAACCTCCTTGAGTTAGC...........................	21	2	298.50	2.50	283.00	13.00	0.00
.............................GACTCACTCAACCTGGGTGT.........................................................................	20	2	286.00	10.00	217.00	59.00	0.00
..........................................................................TCACAACCTCCTTTAGTGAGC...........................	21	2	275.00	0.50	266.00	8.50	0.00
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	271.50	31.50	55.50	183.50	1.00
..........................................................................TAACAACCTCCTTGAGTGAGC...........................	21	2	252.00	1.50	221.00	29.50	0.00
..........................................................................TCACAACCTCATTGAGTGAGC...........................	21	2	236.50	3.50	216.00	17.00	0.00
............................................................................ACAACCTCCTTGAGTGAGC...........................	19	2	193.00	1.00	107.00	85.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGT...........................	21	2	191.00	3.00	157.50	30.50	0.00
...........................................................................CACAACCTCCTTGAGTGAG............................	19	2	159.00	2.00	98.50	58.50	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGC...........................	21	2	156.50	0.00	147.00	9.50	0.00
..........................................................................TCACAACATCCTTGAGTGAGC...........................	21	2	150.50	0.00	132.50	18.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAGC...........................	21	2	137.00	0.50	74.00	62.00	0.50
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	137.00	11.00	33.50	92.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	133.50	14.50	69.50	49.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	114.00	20.50	33.00	59.50	1.00
..........................................................................TCACAGCCTCCTTGAGTGAGC...........................	21	2	95.00	1.50	80.50	13.00	0.00
..............................ACTCACTCAACCTGGGTGT.........................................................................	19	2	91.50	0.00	29.00	62.50	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGCG..........................	22	2	87.00	0.50	75.50	11.00	0.00
..........................................................................CCACAACCTCCTTGAGTGAGC...........................	21	2	85.50	0.00	70.50	15.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGGC...........................	21	2	77.50	0.50	62.00	15.00	0.00
..........................................................................TCACAACCTCCTTGGGTGAGC...........................	21	2	72.00	0.00	66.00	6.00	0.00
..........................................................................TCACAACCTCCTCGAGTGAGC...........................	21	2	72.00	0.50	61.50	10.00	0.00
..........................................................................TCACAACCTCCCTGAGTGAGC...........................	21	2	71.00	0.50	51.50	19.00	0.00
..........................................................................TCACAACCTCCTTGATTGAGC...........................	21	2	70.50	1.50	55.50	13.50	0.00
..........................................................................TCACAACCTCCTTGAGTGATCG..........................	22	2	69.00	4.50	40.50	24.00	0.00
..........................................................................TCACGACCTCCTTGAGTGAGC...........................	21	2	65.50	0.00	56.50	9.00	0.00
..........................................................................TCACAACCTCCTTGAGTGACC...........................	21	2	65.50	0.00	39.00	26.50	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCG..........................	22	2	65.00	1.50	4.50	59.00	0.00
..........................................................................TTACAACCTCCTTGAGTGAGC...........................	21	2	63.50	1.00	57.50	5.00	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCG..........................	22	2	62.00	0.50	1.00	60.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGG...........................	21	2	61.50	2.00	57.00	2.50	0.00
..........................................................................TCACAACCTCCTTGAGTCAGC...........................	21	2	61.00	0.00	31.50	29.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCT..........................	22	2	60.50	8.00	28.00	23.50	1.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	59.50	11.50	25.00	23.00	0.00
..........................................................................TCACAACCCCCTTGAGTGAGC...........................	21	2	58.50	0.50	48.00	10.00	0.00
..........................................................................TCACAACCTCCTTGAGTAAGC...........................	21	2	56.00	1.00	47.50	7.50	0.00
..........................................................................TCACAATCTCCTTGAGTGAGC...........................	21	2	55.50	0.00	48.50	7.00	0.00
..............................ACTCACTCAACCTGGGTGTGT.......................................................................	21	2	55.00	1.00	44.50	9.50	0.00
..........................................................................TCACAACCTTCTTGAGTGAGC...........................	21	2	54.50	0.00	51.00	3.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAT............................	20	2	53.50	1.00	49.50	3.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAGC...........................	21	2	49.00	0.00	21.50	27.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGAG..........................	22	2	48.50	17.50	24.50	6.50	0.00
..........................................................................TCACAAACTCCTTGAGTGAGC...........................	21	2	48.50	0.50	22.50	25.50	0.00
..........................................................................TCACAACCTCCTTGACTGAGC...........................	21	2	46.00	0.50	16.00	29.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGTT........................	24	2	45.00	3.00	24.50	17.50	0.00
..........................................................................TCATAACCTCCTTGAGTGAGC...........................	21	2	44.00	0.00	40.00	4.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAA........................	24	2	43.00	7.50	15.50	19.00	1.00
..........................................................................TCACAACCTCCTTGAGTTAG............................	20	2	42.50	0.00	37.50	5.00	0.00
..........................................................................TCACAACCTCCTTGAGTGCGC...........................	21	2	41.50	0.00	12.50	29.00	0.00
..........................................................................TCACAACCTCCTTTAGTGATC...........................	21	2	41.00	0.50	40.00	0.50	0.00
..........................................................................TCAAAACCTCCTTGAGTGAGC...........................	21	2	40.00	0.50	26.00	13.50	0.00
..........................................................................TCACAACCTCCTTCAGTGAGC...........................	21	2	39.00	1.00	22.50	15.50	0.00
..........................................................................TCACAACCTCTTTGAGTGAGC...........................	21	2	37.50	0.00	30.50	7.00	0.00
..........................................................................TCACAACTTCCTTGAGTGAGC...........................	21	2	36.00	0.00	30.00	6.00	0.00
..........................................................................TCACAACCTCCTTGAGGGAGC...........................	21	2	35.50	0.00	15.50	20.00	0.00
..........................................................................TCACAACCTCCTTGAATGAGC...........................	21	2	35.00	1.00	27.50	6.50	0.00
..........................................................................TCACAACCTCCTTAAGTGAGC...........................	21	2	34.50	1.00	24.00	9.50	0.00
..........................................................................TAACAACCTCCTTGAGTGAGCG..........................	22	2	34.50	4.50	14.00	16.00	0.00
...........................................................................CACAACCTCCTTGAGTGATC...........................	20	2	33.50	0.00	31.00	2.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCA..........................	22	2	33.00	5.00	10.00	18.00	0.00
..........................................................................TCACxACCTCCTTGAGTGAGC...........................	20	2	31.00	0.00	31.00	0.00	0.00
..........................................................................ACACAACCTCCTTGAGTGAGC...........................	21	2	31.00	0.00	13.00	18.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAGCG..........................	22	2	31.00	0.50	2.00	28.50	0.00
..........................................................................TCACAACCTCCGTGAGTGAGC...........................	21	2	30.00	1.00	1.00	28.00	0.00
..........................................................................TCACAACCTCCTTGCGTGAGC...........................	21	2	30.00	0.50	8.50	21.00	0.00
..............................ACTCACTCAACCTGGGTGTGA.......................................................................	21	2	30.00	0.50	16.50	13.00	0.00
..........................................................................TCACAACCTCCTTTAGTGAG............................	20	2	29.50	0.00	25.50	4.00	0.00
..........................................................................TCACAACCGCCTTGAGTGAGC...........................	21	2	29.50	0.50	1.50	27.50	0.00
..........................................................................TCACAACCTACTTGAGTGAG............................	20	2	29.00	0.00	23.50	5.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCGCG..........................	22	2	29.00	0.00	1.00	28.00	0.00
..........................................................................GCACAACCTCCTTGAGTGAGC...........................	21	2	28.00	0.00	6.00	22.00	0.00
..........................................................................TCACAACCTCATTGAGTGAGCG..........................	22	2	26.00	2.50	13.50	10.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAAC...........................	21	2	23.50	0.00	20.00	3.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	23.50	0.50	1.00	22.00	0.00
..........................................................................TCACAACCTCCTTGAGTTAGCG..........................	22	2	23.50	2.50	13.00	8.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGGCG..........................	22	2	23.00	0.00	9.00	14.00	0.00
..............................ACTCACTCAACCTGGGTGTGAT......................................................................	22	2	22.50	0.50	12.50	9.00	0.50
..........................................................................TCACAACCTCCTTTAGTGAGCG..........................	22	2	21.50	1.00	14.00	6.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCC..........................	22	2	21.50	0.50	12.00	9.00	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGCGA.........................	23	2	21.50	0.50	12.00	9.00	0.00
...........................................................................CACAGCCTCCTTGAGTGAGCG..........................	21	2	21.50	0.00	19.00	2.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCGA.........................	23	2	21.00	0.50	1.00	19.50	0.00
..........................................................................TCACAACCTACTTGAGTGAGCG..........................	22	2	20.50	4.00	12.00	4.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGTG..........................	22	2	20.00	4.50	8.50	7.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAG............................	20	2	20.00	0.00	6.00	14.00	0.00
..........................................................................TCACAACATCCTTGAGTGAGCG..........................	22	2	19.50	0.50	4.00	15.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAA........................	23	2	19.50	2.50	9.50	7.50	0.00
..........................................................................TCACCACCTCCTTGAGTGAGC...........................	21	2	18.50	0.50	10.50	7.50	0.00
..........................................................................TCACAACCGCCTTGAGTGAGCG..........................	22	2	18.50	0.00	0.00	18.50	0.00

dp4

AAGTTCGGGTCGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	7367.00	301.50	31.00	7034.00	0.50
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	7079.00	240.50	62.00	6775.50	1.00
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	3033.00	183.50	96.50	2752.50	0.50
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	2279.50	41.00	2.50	2236.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	730.50	35.50	0.00	695.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	654.50	31.00	0.00	622.50	1.00
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	574.00	26.00	9.00	539.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	455.50	20.50	1.00	434.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	205.00	7.50	6.50	191.00	0.00
..........................................................................TCACAACCTCCTTGAGTGA.............................	19	2	164.50	0.00	1.50	163.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	103.50	3.50	0.50	99.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCG..........................	22	2	78.50	0.00	0.00	78.50	0.00
............................................................................ACAACCTCCTTGAGTGAGC...........................	19	2	70.50	0.50	1.00	69.00	0.00
...........................................................................CACAACCTCCTTGAGTGAG............................	19	2	64.50	0.00	0.00	64.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	58.00	3.00	2.00	53.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCG..........................	22	2	55.00	0.00	0.50	54.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	49.50	6.50	0.50	42.50	0.00
..........................................................................TCACAACCTCCTTGAGCGAGC...........................	21	2	47.00	0.00	1.00	46.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	32.50	1.00	0.50	31.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	31.50	5.00	1.50	24.50	0.50
..........................................................................TCACAACCTCCTTGCGTGAGCGA.........................	23	2	31.50	0.00	1.50	30.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAGCG..........................	22	2	28.50	0.00	0.50	28.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAGC...........................	21	2	25.50	0.00	0.00	25.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAA........................	24	2	25.50	3.50	0.00	22.00	0.00
..............................ACTCACTCAACCTGGGTGT.........................................................................	19	2	24.50	0.00	0.00	24.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAGC...........................	21	2	23.50	0.00	0.00	23.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGA...........................	21	2	23.50	0.00	0.50	22.50	0.50
..........................................................................TCACAACCTCCTTGCGTGAG............................	20	2	23.00	0.00	0.00	23.00	0.00
..........................................................................TCACAACCTCCTTGAGTGCGCG..........................	22	2	22.00	0.00	1.00	21.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCA..........................	22	2	21.00	0.00	0.00	21.00	0.00
..............................ACTCACTCAACCTGGGTGTGAT......................................................................	22	2	20.00	0.00	2.50	17.50	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGC...........................	21	2	19.50	0.50	0.00	19.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGT...........................	21	2	19.00	0.50	0.00	18.50	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGCG..........................	22	2	18.00	0.00	0.00	18.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATCG..........................	22	2	16.50	0.50	0.00	16.00	0.00
..........................................................................TCACAACCTCCTTGAGTCAGC...........................	21	2	16.50	0.00	1.00	15.50	0.00
..........................................................................TCACAACCTCCTTGAGCGAG............................	20	2	16.00	0.00	0.00	16.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATC...........................	21	2	15.50	0.00	0.00	15.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCT..........................	22	2	15.50	1.00	0.00	14.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGTT........................	24	2	15.50	1.50	0.00	14.00	0.00
............................................................................ACAACCTCCTTGAGTGAG............................	18	2	15.50	0.50	0.00	15.00	0.00
..............................ACTCACTCAACCTGGGTGTGATG.....................................................................	23	2	14.00	0.50	3.50	10.00	0.00
..........................................................................TCACAACCTCCTTGAGTGCGC...........................	21	2	14.00	0.50	0.00	13.50	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCGA.........................	23	2	13.50	0.50	0.50	12.50	0.00
..........................................................................TCACAACCTCCTTGAGTGGGCG..........................	22	2	13.50	0.50	0.50	12.50	0.00
..........................................................................TCACAACCTCCTTGAGTAAGCG..........................	22	2	13.00	0.50	0.50	12.00	0.00
..........................................................................TCACAACCTCCTTGGGTGAGCG..........................	22	2	13.00	0.00	0.00	13.00	0.00
..........................................................................TCACAACCTCCTTGACTGAGC...........................	21	2	12.50	0.00	0.00	12.50	0.00
..........................................................................TCACAACCTCCGTGAGTGAGC...........................	21	2	12.50	0.00	0.50	12.00	0.00
..........................................................................TCCCAACCTCCTTGAGTGAGCG..........................	22	2	12.00	0.00	0.00	12.00	0.00
..........................................................................TCACAACCTCCTTGAGTGCG............................	20	2	12.00	0.00	0.00	12.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGAG..........................	22	2	12.00	0.00	0.50	11.50	0.00
..........................................................................TCACAACCTCCTTGAGGGAGC...........................	21	2	12.00	0.00	0.50	11.50	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGCG..........................	22	2	11.50	0.00	0.00	11.50	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGC...........................	21	2	11.50	0.00	0.00	11.50	0.00
.............................GACTCACTCAACCTGGGTGT.........................................................................	20	2	11.50	1.00	0.00	10.50	0.00
..........................................................................TCACAACCTCCTTGAGGGAGCG..........................	22	2	11.50	0.50	0.00	11.00	0.00
..........................................................................TAACAACCTCCTTGAGTGAGC...........................	21	2	11.00	0.00	0.00	11.00	0.00
..........................................................................TCACAACCTCCGTGAGTGAGCG..........................	22	2	11.00	0.00	0.00	11.00	0.00
..........................................................................CCACAACCTCCTTGAGTGAGCG..........................	22	2	11.00	0.00	0.00	11.00	0.00
..........................................................................TCACGACCTCCTTGAGTGAGCG..........................	22	2	11.00	0.50	0.00	10.50	0.00
..........................................................................CCACAACCTCCTTGAGTGAGC...........................	21	2	11.00	0.00	0.00	11.00	0.00
..........................................................................TCACAACCTCCTTGGGTGAGC...........................	21	2	10.50	0.00	0.50	10.00	0.00
..........................................................................TCACAACCTCCCTGAGTGAGCG..........................	22	2	10.50	0.50	0.00	10.00	0.00
..........................................................................TCACAACCCCCTTGAGTGAGCG..........................	22	2	10.50	0.00	0.00	10.50	0.00
..........................................................................TCACAACCTCCTTGAGAGAGCGA.........................	23	2	10.50	0.00	0.50	10.00	0.00
..........................................................................TCACAACCTCCTTGAGTGACC...........................	21	2	10.50	0.00	0.00	10.50	0.00
..........................................................................TCACAACATCCTTGAGTGAGCG..........................	22	2	10.00	0.50	0.50	9.00	0.00
..........................................................................TCACAACCTCCTTGAGTCAGCG..........................	22	2	10.00	0.00	0.00	10.00	0.00
..........................................................................TCACAACCTCCTTAAGTGAGC...........................	21	2	10.00	0.00	1.00	9.00	0.00
..........................................................................TCCCAACCTCCTTGAGTGAGC...........................	21	2	10.00	0.00	0.00	10.00	0.00
..........................................................................TCACAAACTCCTTGAGTGAGC...........................	21	2	9.50	0.00	0.00	9.50	0.00
..........................................................................TCACAACCTCCTTCAGTGAGC...........................	21	2	9.50	0.00	0.00	9.50	0.00
............................................................................ACAACCTCCTTGAGTGAGCGT.........................	21	2	9.50	0.50	0.00	9.00	0.00
..........................................................................TCACGACCTCCTTGAGTGAGC...........................	21	2	9.50	0.50	0.00	9.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGGC...........................	21	2	9.50	0.50	0.50	8.50	0.00
..........................................................................TCACAACCTACTTGAGTGAGC...........................	21	2	8.50	0.00	0.50	8.00	0.00
..........................................................................TCACAACCTCCTTGAGTAAGC...........................	21	2	8.50	0.50	0.00	8.00	0.00
..........................................................................TCACAACCTCATTGAGTGAGCG..........................	22	2	8.50	0.00	0.00	8.50	0.00
.........................................................................CTCACAACCTCCTTGAGTGAGCG..........................	23	2	8.50	0.50	0.00	8.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAA........................	23	2	8.50	0.00	0.50	8.00	0.00
..........................................................................TAACAACCTCCTTGAGTGAGCG..........................	22	2	8.50	0.00	0.00	8.50	0.00
..........................................................................ACACAACCTCCTTGAGTGAGCG..........................	22	2	8.00	0.50	0.00	7.50	0.00
..........................................................................TAACAACCTCCTTGAGTGAGCGA.........................	23	2	8.00	0.00	0.00	8.00	0.00
..........................................................................TCACAACCTCCTTGAGTTAGC...........................	21	2	8.00	0.00	0.00	8.00	0.00
..........................................................................TCACAACCTCCTTGAGTGACCG..........................	22	2	8.00	0.00	0.00	8.00	0.00
..............................ACTCACTCAACCTGGGTGTGA.......................................................................	21	2	8.00	0.00	0.50	7.50	0.00
...........................................................................CACAACCTCCTTGAGCGAGCG..........................	21	2	7.50	0.00	0.00	7.50	0.00
..........................................................................TCACAACCTCTTTGAGTGAGC...........................	21	2	7.50	0.00	0.00	7.50	0.00
..........................................................................TCACAACCTCCTTGAGTCAG............................	20	2	7.50	0.00	0.00	7.50	0.00
..........................................................................TCACAACCTCCTCGAGTGAGC...........................	21	2	7.50	0.50	0.00	7.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGTG..........................	22	2	7.50	0.00	0.00	7.50	0.00
..........................................................................TCACAACCTCCGTGAGAGAGC...........................	21	2	7.50	0.00	0.00	7.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCGT.........................	23	2	7.50	0.00	0.00	7.50	0.00
..........................................................................TCACAACCTCCTCGAGTGAGCG..........................	22	2	7.50	0.00	0.00	7.50	0.00
..........................................................................TCACAACCTCCTTAAGTGAGCG..........................	22	2	7.00	0.00	0.00	7.00	0.00
..........................................................................TCACAACCTCCCTGAGTGAGC...........................	21	2	7.00	0.00	0.00	7.00	0.00
..........................................................................TCACAATCTCCTTGAGTGAGCG..........................	22	2	7.00	0.00	0.00	7.00	0.00
..........................................................................TCTCAACCTCCTTGAGTGAGCG..........................	22	2	7.00	0.00	0.00	7.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCAA.........................	23	2	7.00	0.50	0.00	6.50	0.00
...........................................................................CACAACCTCCTTGCGTGAGCG..........................	21	2	7.00	0.00	0.00	7.00	0.00

droPer1

AAGTTCGGGTCGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	13703.50	233.00	11.50	5964.00	7495.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	11526.50	199.50	21.50	5433.00	5871.00	1.50
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	4927.50	225.50	33.50	2124.50	2543.50	0.50
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	4035.00	55.50	0.50	1542.50	2436.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	1713.00	59.00	0.00	542.00	1112.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	1464.50	29.50	0.50	520.00	912.50	2.00
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	1136.50	32.50	2.00	482.00	619.50	0.50
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	974.00	18.50	0.00	282.50	673.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	383.50	10.50	1.00	150.00	221.50	0.50
..........................................................................TCACAACCTCCTTGAGTGA.............................	19	2	313.50	1.00	0.50	109.00	203.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	165.00	1.00	0.50	66.50	97.00	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCG..........................	22	2	160.00	0.50	0.00	68.00	91.50	0.00
...........................................................................CACAACCTCCTTGAGTGAG............................	19	2	159.50	0.00	0.00	42.50	117.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCG..........................	22	2	148.50	0.00	0.00	43.00	105.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	139.00	5.00	0.00	30.00	104.00	0.00
............................................................................ACAACCTCCTTGAGTGAGC...........................	19	2	135.50	1.00	0.00	59.50	75.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	133.00	4.00	0.50	45.50	83.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAGC...........................	21	2	100.50	0.00	0.00	34.50	66.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	85.00	2.00	0.00	21.00	62.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	81.00	4.50	0.00	36.50	39.00	1.00
..........................................................................TCACAACCTCCTTGAGAGAGCG..........................	22	2	68.00	2.00	0.00	19.50	46.50	0.00
..........................................................................TCACAACCTCCTTGAGTGATCG..........................	22	2	55.50	0.00	0.50	14.00	41.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGA...........................	21	2	54.00	2.00	0.00	24.50	27.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAA........................	24	2	54.00	2.00	0.00	23.00	29.00	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGCG..........................	22	2	51.00	0.00	0.00	36.00	15.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAGC...........................	21	2	50.00	0.50	0.00	19.00	30.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCGCG..........................	22	2	50.00	0.00	0.00	23.00	27.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGT...........................	21	2	46.50	0.50	0.00	10.50	35.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGTT........................	24	2	45.00	1.00	0.00	13.00	31.00	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCGA.........................	23	2	44.50	0.00	0.00	18.50	26.00	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGC...........................	21	2	44.00	0.00	0.00	29.00	15.00	0.00
..........................................................................TCACAACCTCCTTGACTGAGC...........................	21	2	43.50	0.00	0.50	8.00	35.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCT..........................	22	2	42.50	1.00	0.00	12.50	29.00	0.00
..........................................................................TCACAACCTCCTTGCGTGAG............................	20	2	41.50	0.00	0.00	18.00	23.50	0.00
............................................................................ACAACCTCCTTGAGTGAG............................	18	2	40.50	0.00	0.00	15.50	25.00	0.00
..........................................................................TCACAACCGCCTTGAGTGAGCG..........................	22	2	39.00	0.00	0.00	3.00	36.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCGA.........................	23	2	39.00	0.50	0.50	10.50	27.50	0.00
..........................................................................TAACAACCTCCTTGAGTGAGCG..........................	22	2	39.00	0.00	0.00	7.00	32.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAG............................	20	2	38.00	0.00	0.00	11.50	26.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAGC...........................	21	2	37.50	0.00	0.00	15.50	22.00	0.00
..........................................................................TCACAACCTCCTTGGGTGAGCG..........................	22	2	37.00	0.00	0.00	12.00	25.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATC...........................	21	2	36.00	0.50	0.00	8.00	27.50	0.00
..........................................................................TAACAACCTCCTTGAGTGAGC...........................	21	2	35.50	0.00	0.00	4.50	31.00	0.00
..........................................................................TCACAACCTCCTTGAGTGACCG..........................	22	2	35.50	0.00	0.00	10.00	25.50	0.00
..........................................................................TCACAACCTCCGTGAGTGAGC...........................	21	2	34.50	0.00	0.00	6.50	28.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGGCG..........................	22	2	34.50	0.00	0.00	10.50	24.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCA..........................	22	2	34.00	1.50	0.00	13.50	19.00	0.00
..........................................................................TCACAACCTCCTTGAGTCAGC...........................	21	2	32.50	0.50	0.00	7.50	24.50	0.00
..........................................................................TCACAACCTCCTTGAGTGACC...........................	21	2	32.50	0.50	0.00	11.50	20.50	0.00
..........................................................................TCACAACCTCCTTGTGTGAGCG..........................	22	2	32.50	0.00	0.00	6.00	26.50	0.00
..........................................................................TCACAACCTCCGTGAGTGAGCG..........................	22	2	31.00	0.00	0.00	4.50	26.50	0.00
..........................................................................TCACAACCGCCTTGAGTGAGC...........................	21	2	30.50	0.00	0.00	5.00	25.50	0.00
..............................ACTCACTCAACCTGGGTGT.........................................................................	19	2	30.00	0.00	0.00	9.50	20.50	0.00
..........................................................................TCACAAACTCCTTGAGTGAGCG..........................	22	2	29.00	0.00	0.00	7.00	22.00	0.00
..............................ACTCACTCAACCTGGGTGTGAT......................................................................	22	2	29.00	1.00	0.50	16.00	11.50	0.00
.............................GACTCACTCAACCTGGGTGT.........................................................................	20	2	27.50	0.50	0.00	6.00	21.00	0.00
..........................................................................TCACGACCTCCTTGAGTGAGCG..........................	22	2	26.00	0.00	0.00	9.00	17.00	0.00
..........................................................................TCACAACATCCTTGAGTGAGCG..........................	22	2	25.50	0.00	0.00	6.00	19.50	0.00
..........................................................................TCACAACCTCCCTGAGTGAGC...........................	21	2	25.00	0.50	0.00	7.50	17.00	0.00
..........................................................................TCACAACCTCCCTGAGTGAGCG..........................	22	2	24.50	0.50	0.50	7.00	16.50	0.00
..........................................................................TCACAACCTCCTTGAGGGAGCG..........................	22	2	24.50	0.00	0.00	6.50	18.00	0.00
..........................................................................TCACAACCTCCTCGAGTGAGCG..........................	22	2	23.00	0.00	0.00	7.50	15.50	0.00
..........................................................................TCACAACCTCCTCGAGTGAGC...........................	21	2	22.50	0.00	0.00	5.50	17.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCGT.........................	21	2	22.50	0.00	0.00	8.00	14.50	0.00
..........................................................................TCACAACCTCCTTCAGTGAGC...........................	21	2	22.00	1.00	0.00	4.00	17.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGAG..........................	22	2	22.00	0.00	0.00	14.50	7.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCC..........................	22	2	22.00	0.00	0.00	6.50	15.50	0.00
..........................................................................CCACAACCTCCTTGAGTGAGCG..........................	22	2	21.50	0.50	0.00	5.00	16.00	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGCGA.........................	23	2	21.00	0.50	0.00	10.00	10.50	0.00
..............................ACTCACTCAACCTGGGTGTGATG.....................................................................	23	2	20.50	0.00	0.00	8.00	12.50	0.00
..........................................................................TCACAACCTCCTTGACTGAGCG..........................	22	2	20.50	0.00	0.00	6.00	14.50	0.00
..........................................................................TCACAAACTCCTTGAGTGAGC...........................	21	2	20.50	0.00	0.00	5.50	15.00	0.00
...........................................................................CACAACCTCCTTGAGCGAGCG..........................	21	2	19.50	0.50	0.00	4.50	14.50	0.00
..............................ACTCACTCAACCTGGGTGTGA.......................................................................	21	2	19.00	0.00	0.00	6.50	12.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCGC...........................	21	2	19.00	0.00	0.00	8.00	11.00	0.00
..........................................................................TCACAATCTCCTTGAGTGAGCG..........................	22	2	19.00	0.50	0.00	5.50	13.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAG............................	20	2	18.50	0.50	0.00	6.50	11.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCGCGA.........................	23	2	18.50	0.00	0.00	6.50	12.00	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCGT.........................	23	2	18.50	0.00	0.00	2.00	16.50	0.00
..........................................................................CCACAACCTCCTTGAGTGAGC...........................	21	2	18.50	0.50	0.00	9.50	8.50	0.00
..........................................................................TCACAACCTCCTTGAGTGTGCG..........................	22	2	18.00	0.00	0.00	4.50	13.50	0.00
..........................................................................TCACACCCTCCTTGAGTGAGCG..........................	22	2	18.00	0.00	0.00	12.00	6.00	0.00
..........................................................................ACACAACCTCCTTGAGTGAGCG..........................	22	2	18.00	0.00	0.00	4.50	13.50	0.00
..........................................................................TCACAACCTCCTTGAGAGAGCGA.........................	23	2	17.50	0.50	0.00	5.00	12.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGG.........................	23	2	17.50	0.00	0.00	6.00	11.50	0.00
..........................................................................TCACAACCTCCTTGAGTTAGCG..........................	22	2	17.50	0.00	0.00	8.50	9.00	0.00
..........................................................................TCACAACCTCATTGAGTGAGC...........................	21	2	17.00	0.00	0.00	5.00	12.00	0.00
..........................................................................TCACAACCGCCTTGAGTGAG............................	20	2	17.00	0.00	0.00	1.00	16.00	0.00
..........................................................................TCACAACCGCCTTGAGTGAGCGA.........................	23	2	17.00	0.00	0.00	2.00	15.00	0.00
..........................................................................TCACAACATCCTTGAGTGAGC...........................	21	2	17.00	0.00	0.00	2.50	14.50	0.00
..........................................................................TCACAACCTCCTTGAGGGAGC...........................	21	2	17.00	0.00	0.00	3.50	13.50	0.00
..........................................................................TCACAACCTCATTGAGTGAGCG..........................	22	2	17.00	0.50	0.00	3.50	13.00	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGC...........................	21	2	16.50	0.00	0.00	6.00	10.50	0.00
..........................................................................ACACAACCTCCTTGAGTGAGC...........................	21	2	16.50	0.50	0.00	2.00	14.00	0.00
..........................................................................TCACAACCTCCTTGAGTTAGC...........................	21	2	16.50	0.00	0.00	5.00	11.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCG............................	20	2	16.00	0.00	0.00	5.00	11.00	0.00
..........................................................................TCACAACCTCCTTGAGTAAGCG..........................	22	2	16.00	0.50	0.00	8.00	7.50	0.00
..........................................................................TCACAACCTCCTTGAGTCAGCG..........................	22	2	15.50	0.00	0.00	2.50	13.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGTG..........................	22	2	15.50	0.00	0.00	4.50	11.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGGC...........................	21	2	15.50	0.00	0.50	6.00	9.00	0.00
..........................................................................TCACAACCCCCTTGAGTGAGCG..........................	22	2	15.50	0.00	0.00	3.50	12.00	0.00

droWil1

AACTTAA--CA-CA-TTTTGCCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTTATAATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	45650.50	217.50	241.50	44429.50	762.00
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	3944.00	54.00	25.50	3745.50	119.00
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	3441.00	391.50	163.00	2725.50	161.00
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	1705.50	223.00	442.00	976.00	64.50
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	1681.50	16.00	5.00	1625.50	35.00
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	1558.00	47.00	14.00	395.00	1102.00
............................................................................ACAACCTCCTTGAGTGAGC...........................	19	2	453.00	3.00	3.00	445.50	1.50
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	392.00	41.00	60.00	241.50	49.50
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	356.00	21.50	3.00	254.00	77.50
..........................................................................TCACAACCTCCTTGAGTGA.............................	19	2	246.50	0.50	2.50	243.00	0.50
..........................................................................TCACAACCTCCTTGAGTGAGA...........................	21	2	214.00	0.00	1.00	210.50	2.50
..........................................................................TCACAGCCTCCTTGAGTGAGCG..........................	22	2	198.00	2.00	0.00	195.50	0.50
..........................................................................CCACAACCTCCTTGAGTGAGC...........................	21	2	167.00	0.00	0.00	167.00	0.00
..........................................................................TCACAACATCCTTGAGTGAGC...........................	21	2	146.00	0.00	0.00	146.00	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGC...........................	21	2	137.50	0.50	0.00	136.00	1.00
..........................................................................TCACAACCTACTTGAGTGAGC...........................	21	2	136.50	0.00	0.00	136.00	0.50
...........................................................................CACAACCTCCTTGAGTGAG............................	19	2	135.50	1.00	2.00	113.00	19.50
..........................................................................TCACAACCTCATTGAGTGAGC...........................	21	2	130.50	0.00	1.00	129.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAAC...........................	21	2	128.00	0.00	0.00	128.00	0.00
..........................................................................TAACAACCTCCTTGAGTGAGC...........................	21	2	128.00	0.50	0.00	127.50	0.00
..........................................................................TCACAACCTCCTTGAGTAAGC...........................	21	2	126.50	1.50	0.50	123.50	1.00
..........................................................................TCAAAACCTCCTTGAGTGAGC...........................	21	2	114.50	0.00	0.00	114.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	94.50	7.00	14.50	57.50	15.50
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	86.50	14.50	22.00	47.50	2.50
..........................................................................ACACAACCTCCTTGAGTGAGC...........................	21	2	84.50	0.50	0.00	84.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	84.00	3.00	9.50	27.50	44.00
...........................................................................CACAGCCTCCTTGAGTGAGCG..........................	21	2	81.00	0.00	0.00	68.50	12.50
..........................................................................TCACAACCTCCTTGAATGAGC...........................	21	2	80.50	0.00	0.00	80.50	0.00
..........................................................................TCACAACCTCCTTGAGCGAGC...........................	21	2	73.50	0.00	0.50	72.00	1.00
..........................................................................TCACAACCTCCTTAAGTGAGC...........................	21	2	68.00	0.50	0.50	66.50	0.50
..........................................................................TCACAACCTCCCTGAGTGAGC...........................	21	2	66.00	0.00	0.50	65.50	0.00
..........................................................................TCACAACCTCCTTGAGTTAGC...........................	21	2	61.50	1.50	0.00	60.00	0.00
..........................................................................GCACAACCTCCTTGAGTGAGC...........................	21	2	60.00	0.00	0.00	60.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATC...........................	21	2	58.50	2.00	1.00	55.50	0.00
..........................................................................TCACGACCTCCTTGAGTGAGC...........................	21	2	57.50	0.00	1.00	56.50	0.00
..........................................................................TCACAACCTCCTTGGGTGAGC...........................	21	2	56.00	0.00	0.00	55.00	1.00
..........................................................................TCACAACCTCCTTGAGTGACC...........................	21	2	54.00	0.50	0.50	53.00	0.00
..........................................................................TCACAACCTCCTTTAGTGAGC...........................	21	2	54.00	0.00	0.00	54.00	0.00
..........................................................................TCACAACCTCCTCGAGTGAGC...........................	21	2	53.50	0.00	0.50	51.50	1.50
..........................................................................TCACAACCCCCTTGAGTGAGC...........................	21	2	52.50	0.50	0.00	52.00	0.00
..........................................................................TCACAACTTCCTTGAGTGAGC...........................	21	2	50.00	0.00	0.00	50.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	49.50	5.00	3.50	40.00	1.00
..........................................................................TCACAACCTCCTTGAGTCAGC...........................	21	2	49.00	0.50	1.00	47.50	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGC...........................	21	2	47.00	0.00	0.50	46.50	0.00
..........................................................................TCACAACCTCCTTGAGTGGGC...........................	21	2	46.00	0.00	0.00	45.00	1.00
..........................................................................TCACAACCTCCTTGATTGAGC...........................	21	2	45.50	0.00	0.00	43.50	2.00
..........................................................................TCACAGCCTCCTTGAGTGAGCGA.........................	23	2	41.00	1.00	1.00	39.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	40.00	2.50	1.00	35.00	1.50
..........................................................................TCACAACCTCCTTGAGTGAGT...........................	21	2	39.00	0.00	0.00	35.00	4.00
..........................................................................TCACAACCTCCTTGCGTGAGC...........................	21	2	37.00	0.00	0.00	36.50	0.50
..........................................................................TCACAGCCTCCTTGAGTGAG............................	20	2	37.00	0.00	0.00	37.00	0.00
..........................................................................TCACAACCTTCTTGAGTGAGC...........................	21	2	36.00	0.00	0.00	36.00	0.00
..........................................................................TCATAACCTCCTTGAGTGAGC...........................	21	2	36.00	0.00	0.00	36.00	0.00
............................................................................ACAACCTCCTTGAGTGAG............................	18	2	34.50	0.50	1.00	33.00	0.00
..........................................................................TCACCACCTCCTTGAGTGAGC...........................	21	2	33.50	0.00	0.00	33.50	0.00
..........................................................................TTACAACCTCCTTGAGTGAGC...........................	21	2	33.50	0.00	0.00	33.50	0.00
..........................................................................TCACAACCTCCTTGACTGAGC...........................	21	2	33.00	0.00	0.00	33.00	0.00
.........................................................................CTCACAACCTCCTTGAGTGAGC...........................	22	2	33.00	0.50	0.50	32.00	0.00
..........................................................................TCACAACCTCTTTGAGTGAGC...........................	21	2	31.50	0.00	0.00	31.00	0.50
..........................................................................TCACACCCTCCTTGAGTGAGC...........................	21	2	31.50	0.00	0.00	31.50	0.00
..........................................................................TCACxACCTCCTTGAGTGAGC...........................	20	2	29.50	0.00	0.00	29.50	0.00
..........................................................................TCACAACCTCCTTGAGAGAGC...........................	21	2	28.50	0.00	0.00	28.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCGC...........................	21	2	28.00	0.50	0.00	27.50	0.00
..........................................................................TCACAACCTCCTTCAGTGAGC...........................	21	2	27.00	0.00	1.00	24.50	1.50
..........................................................................TCACAACCTCCTTGAGGGAGC...........................	21	2	26.50	0.00	0.00	24.50	2.00
.............................GACTCACTCAACCTGGGTGT.........................................................................	20	2	25.50	0.00	0.00	25.50	0.00
...........................................................................CACAGCCTCCTTGAGTGAGCGA.........................	22	2	24.50	1.00	0.50	23.00	0.00
..........................................................................TCCCAACCTCCTTGAGTGAGC...........................	21	2	24.50	0.00	0.00	24.50	0.00
..........................................................................TCACAACCTCCATGAGTGAGC...........................	21	2	21.00	0.00	0.00	21.00	0.00
..............................ACTCACTCAACCTGGGTGT.........................................................................	19	2	20.50	0.00	0.50	20.00	0.00
..........................................................................TCACAATCTCCTTGAGTGAGC...........................	21	2	20.00	0.50	0.50	19.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGG.........................	23	2	20.00	0.50	1.00	7.50	11.00
...........................................................................CACGACCTCCTTGAGTGAGCG..........................	21	2	20.00	0.00	0.00	1.00	19.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAA........................	24	2	18.00	3.00	5.00	10.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGAG..........................	22	2	17.50	0.00	1.00	16.00	0.50
..........................................................................TCACAACCACCTTGAGTGAGC...........................	21	2	17.50	0.00	0.00	17.50	0.00
..........................................................................CCACAACCTCCTTGAGTGAG............................	20	2	17.00	0.00	0.00	16.50	0.50
..............................ACTCACTCAACCTGGGTGTGAT......................................................................	22	2	17.00	0.00	1.00	15.00	1.00
............................................................................ACAACCTCCTTGAGTGAGCGAT........................	22	2	16.00	2.00	4.00	7.00	3.00
..........................................................................TCACAACCTCCTTGAGTGAGCC..........................	22	2	15.50	1.00	0.00	14.50	0.00
...............................................................................ACCTCCTTGAGTGAGCGT.........................	18	2	15.50	0.00	0.00	0.00	15.50
..........................................................................TCTCAACCTCCTTGAGTGAGC...........................	21	2	15.50	0.00	0.50	15.00	0.00
..........................................................................TCACAACCTCCTTGAGTGTGC...........................	21	2	15.00	0.00	0.00	15.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCA..........................	22	2	14.50	2.00	0.50	12.00	0.00
..........................................................................TCACAACCTACTTGAGTGAG............................	20	2	14.00	0.00	0.00	14.00	0.00
..........................................................................TCACAACATCCTTGAGTGAGCG..........................	22	2	13.50	0.00	0.00	13.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	13.00	1.00	0.00	8.50	3.50
..........................................................................TCACAACCTCCTTGAGTGAGG...........................	21	2	13.00	0.00	0.00	9.00	4.00
..........................................................................TCACAACATCCTTGAGTGAG............................	20	2	13.00	0.00	0.00	13.00	0.00
...........................................................................CACAGCCTCCTTGAGTGAGC...........................	20	2	13.00	0.00	0.00	13.00	0.00
..............................ACTCACTCAACCTGGGTGTG........................................................................	20	2	13.00	0.00	0.00	1.50	11.50
..........................................................................TCACAACCTCCTAGAGTGAGC...........................	21	2	13.00	0.00	0.00	11.00	2.00
..........................................................................TCACAACCxCCTTGAGTGAGC...........................	20	2	12.50	0.00	0.00	12.50	0.00
..........................................................................TCACAACCTACTTGAGTGAGCG..........................	22	2	11.50	0.00	0.00	11.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCT..........................	22	2	11.50	0.50	0.50	9.50	1.00
..........................................................................TCACAACCTCCTTGAGTGAACG..........................	22	2	11.00	0.50	0.00	10.50	0.00
..........................................................................TCACTACCTCCTTGAGTGAGC...........................	21	2	10.50	0.00	0.00	10.50	0.00
..........................................................................TCACAACCTCCxTGAGTGAGC...........................	20	2	10.50	0.00	0.00	10.50	0.00
..........................................................................TAACAACCTCCTTGAGTGAG............................	20	2	10.00	0.00	0.00	10.00	0.00
..........................................................................TCAAAACCTCCTTGAGTGAG............................	20	2	10.00	0.00	0.00	10.00	0.00
..........................................................................TCACATCCTCCTTGAGTGAGC...........................	21	2	9.00	0.00	0.00	9.00	0.00

droVir3

AACCGAA-----CA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTAGTT-CGATTTGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAGTATCCACTAAGC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	9255.50	360.50	8699.00	16.50	43.50	136.00
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	5176.50	1291.50	3840.50	18.50	9.50	16.50
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	2587.00	53.00	2504.00	0.00	8.50	21.50
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	2207.50	1072.00	1065.50	47.50	8.00	14.50
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	1344.00	171.50	819.50	0.50	67.00	285.50
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	1272.50	74.50	1173.50	0.50	3.00	21.00
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	621.00	256.00	340.00	5.00	5.50	14.50
..........................................................................TCACAACCTCCTTGAGTGA.............................	19	2	302.50	2.00	299.00	0.00	0.50	1.00
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	222.50	35.00	175.50	0.50	2.00	9.50
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	139.50	42.50	94.50	1.00	1.50	0.00
...........................................................................CACAACCTCCTTGAGTGAG............................	19	2	136.00	0.50	121.50	0.00	0.50	13.50
............................................................................ACAACCTCCTTGAGTGAGC...........................	19	2	135.00	6.00	128.00	0.00	0.00	1.00
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	100.50	21.50	78.00	0.50	0.00	0.50
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	99.50	29.00	63.50	1.00	3.50	2.50
..........................................................................TCACAACCTCCTTGAGTGACC...........................	21	2	70.50	0.00	70.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	69.50	20.50	31.50	0.50	6.50	10.50
..........................................................................TCACAACCTCCTTGAGCGAGC...........................	21	2	68.50	0.50	67.50	0.00	0.00	0.50
..........................................................................TCACAAACTCCTTGAGTGAGC...........................	21	2	61.50	0.00	61.50	0.00	0.00	0.00
.........................................................................ATCACAACCTCCTTGAGTGAGC...........................	22	2	60.00	4.50	53.00	2.50	0.00	0.00
................................TCACTCAACCTGGGTGTGATGT....................................................................	22	2	57.00	1.00	50.50	5.50	0.00	0.00
.........................................................................ATCACAACCTCCTTGAGTGAG............................	21	2	53.00	1.50	50.50	0.00	0.00	1.00
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	47.50	8.00	38.50	0.00	0.50	0.50
..........................................................................TCACAACCTCCTTGAGTGAGA...........................	21	2	38.50	0.00	37.50	0.50	0.00	0.50
..........................................................................TCACAACCTCCTTGAGTTAGC...........................	21	2	37.00	0.00	37.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCG..........................	22	2	36.00	1.00	35.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAGC...........................	21	2	36.00	0.50	35.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCG..........................	22	2	34.00	0.50	33.00	0.50	0.00	0.00
..........................................................................TCACAACCTCCTTGACTGAGC...........................	21	2	31.50	0.50	31.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGACCG..........................	22	2	30.00	1.00	29.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGTGTGAGCG..........................	22	2	29.50	0.00	29.50	0.00	0.00	0.00
..........................................................................CCACAACCTCCTTGAGTGAGC...........................	21	2	29.00	0.00	28.50	0.00	0.00	0.50
..........................................................................TCACAACCTCCGTGAGTGAGC...........................	21	2	28.00	0.00	28.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGT...........................	21	2	28.00	1.00	24.50	0.00	0.50	2.00
..........................................................................TCACAACCTCCTTGAGTGAGCT..........................	22	2	27.50	12.00	15.00	0.00	0.00	0.50
............................................................................ACAACCTCCTTGAGTGAG............................	18	2	26.00	0.50	25.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGGGAGC...........................	21	2	26.00	0.50	24.50	0.00	0.50	0.50
..........................................................................TCACAACCTCCTTGAGTGAGCGAA........................	24	2	25.50	10.50	15.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATC...........................	21	2	24.00	0.00	24.00	0.00	0.00	0.00
..........................................................................TCACAACCGCCTTGAGTGAGC...........................	21	2	23.00	0.00	23.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAGCG..........................	22	2	23.00	2.00	21.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTCAGTGAGC...........................	21	2	21.50	0.00	21.50	0.00	0.00	0.00
...........................................................................CACAACATCCTTGAGTGAGC...........................	20	2	20.50	0.00	20.50	0.00	0.00	0.00
..........................................................................TAACAACCTCCTTGAGTGAGC...........................	21	2	20.50	0.00	20.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAG............................	20	2	20.50	0.00	20.50	0.00	0.00	0.00
..........................................................................TCACAAACTCCTTGAGTGAGCG..........................	22	2	20.00	0.00	20.00	0.00	0.00	0.00
.........................................................................ATCACAACCTCCTTGAGTGA.............................	20	2	20.00	1.00	18.00	0.00	0.00	1.00
..........................................................................TCACAACCTCCTTGCGTGAG............................	20	2	19.50	0.00	19.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGCGTGAGC...........................	21	2	19.00	0.50	18.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTCAGC...........................	21	2	18.50	0.00	18.50	0.00	0.00	0.00
..........................................................................TCACAACCCCCTTGAGTGAGC...........................	21	2	18.00	0.50	17.00	0.50	0.00	0.00
.............................GACTCACTCAACCTGGGTGT.........................................................................	20	2	18.00	1.50	16.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTAAGTGAGC...........................	21	2	17.50	0.00	17.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGTGTGAGC...........................	21	2	17.50	0.50	17.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGCGC...........................	21	2	17.50	0.50	16.00	0.00	0.00	1.00
..........................................................................TCACAAACTCCTTGAGTGAG............................	20	2	17.50	0.00	17.50	0.00	0.00	0.00
................................TCACTCAACCTGGGTGTGATG.....................................................................	21	2	17.50	0.50	16.50	0.50	0.00	0.00
..............................ACTCACTCAACCTGGGTGT.........................................................................	19	2	16.00	0.00	16.00	0.00	0.00	0.00
..........................................................................TCACAACCTCATTGAGTGAGC...........................	21	2	16.00	0.00	16.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCA..........................	22	2	15.50	3.50	12.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGGCG..........................	22	2	15.00	1.50	13.50	0.00	0.00	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGC...........................	21	2	14.50	0.00	14.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGTGTGAG............................	20	2	13.50	0.00	13.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGGC...........................	21	2	13.50	0.00	13.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCC..........................	22	2	13.00	1.00	12.00	0.00	0.00	0.00
..............................ACTCACTCAACCTGGGTGTGAT......................................................................	22	2	13.00	0.00	13.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCCTGAGTGAGC...........................	21	2	12.50	2.00	10.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTGGAGTGAGC...........................	21	2	12.50	0.00	12.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	12.50	1.00	11.00	0.50	0.00	0.00
...........................................................................CACAACATCCTTGAGTGAGCG..........................	21	2	12.50	0.00	12.50	0.00	0.00	0.00
..............................ACTCACTCAACCTGGGTGTGT.......................................................................	21	2	12.50	0.00	12.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAC............................	20	2	12.00	0.00	11.50	0.00	0.00	0.50
..........................................................................TCACAACCTCCGTGAGTGAGCG..........................	22	2	12.00	0.00	12.00	0.00	0.00	0.00
..............................ACTCACTCAACCTGGGTGTG........................................................................	20	2	12.00	0.00	5.50	0.00	0.00	6.50
..........................................................................TCACAACCTCCTTGACTGAGCG..........................	22	2	11.50	0.00	11.50	0.00	0.00	0.00
...........................................................................CACAACCTCCTTGAGCGAGC...........................	20	2	11.50	0.50	11.00	0.00	0.00	0.00
...........................................................................CACAACCTCCTTGCGTGAGCG..........................	21	2	11.50	0.00	11.50	0.00	0.00	0.00
..............................ACTCACTCAACCTGGGTGTGA.......................................................................	21	2	11.50	0.00	9.50	0.00	0.00	2.00
..........................................................................TCACAACCTCCTTGACTGAG............................	20	2	11.50	0.00	11.50	0.00	0.00	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGC...........................	21	2	11.00	0.00	11.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTAAGC...........................	21	2	11.00	1.50	9.50	0.00	0.00	0.00
..........................................................................TCACAAACTCCTTGAGTGACC...........................	21	2	11.00	0.00	11.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTCGAGTGAGC...........................	21	2	11.00	0.00	11.00	0.00	0.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCGAT........................	22	2	10.50	4.00	5.00	0.00	1.00	0.50
..........................................................................TCACAACCTCCTTGGGTGAGCG..........................	22	2	10.50	2.50	7.50	0.50	0.00	0.00
..........................................................................TCACAACCTCCGTGAGTGAG............................	20	2	10.50	0.00	10.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCGA.........................	23	2	10.50	1.50	9.00	0.00	0.00	0.00
..........................................................................TCACAACCCCCTTGAGTGAGCG..........................	22	2	10.00	1.00	9.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGGGAGCG..........................	22	2	10.00	2.50	7.00	0.00	0.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCGCG..........................	22	2	10.00	0.00	10.00	0.00	0.00	0.00
..........................................................................TCACAACCTACTTGAGTGAGC...........................	21	2	10.00	0.00	9.50	0.00	0.00	0.50
..........................................................................TCACAACCTCCTTGCGTGAGCGA.........................	23	2	9.50	1.00	7.50	1.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTTACC...........................	21	2	9.50	0.00	9.50	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAG............................	20	2	9.00	0.00	9.00	0.00	0.00	0.00
...........................................................................CACAACCTCCTTGAGGGAGC...........................	20	2	9.00	0.00	9.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGCG............................	20	2	9.00	0.00	9.00	0.00	0.00	0.00
..........................................................................CCACAACCTCCTTGAGTGAGCG..........................	22	2	9.00	1.00	8.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCGTGAGAGAGC...........................	21	2	9.00	0.00	9.00	0.00	0.00	0.00
..........................................................................TCACAACATCCTTGAGTGAGC...........................	21	2	9.00	0.00	9.00	0.00	0.00	0.00
...........................................................................CACAACCTCCTTGAGCGAGCG..........................	21	2	9.00	0.50	8.00	0.00	0.00	0.50
..........................................................................TCACAACCTCCTTGAGTTAG............................	20	2	9.00	0.00	9.00	0.00	0.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGG............................	20	2	9.00	0.00	9.00	0.00	0.00	0.00

droMoj3

ttgTttG-----tt-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATTCGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	13631.50	271.50	8112.50	5217.50	30.00
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	5570.50	348.50	3240.00	1954.50	27.50
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	4565.50	71.00	2826.00	1668.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	2654.50	74.50	1600.50	978.00	1.50
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	2084.00	424.00	998.50	599.50	62.00
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	1451.50	107.00	857.00	486.00	1.50
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	839.50	52.50	493.50	293.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	734.50	136.50	401.50	186.00	10.50
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	535.00	22.00	320.00	193.00	0.00
..........................................................................TCACAACCTCCTTGAGTGA.............................	19	2	491.00	1.00	298.50	191.50	0.00
...........................................................................CACAACCTCCTTGAGTGAG............................	19	2	286.50	4.00	183.00	99.50	0.00
............................................................................ACAACCTCCTTGAGTGAGC...........................	19	2	163.00	1.00	95.00	67.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGT...........................	21	2	159.00	0.50	100.00	58.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCG..........................	22	2	148.50	0.00	34.50	113.00	1.00
..........................................................................TCACAACCTCCTTGCGTGAGC...........................	21	2	134.50	0.00	20.50	114.00	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGTT........................	23	2	133.50	8.50	85.50	39.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAG............................	20	2	111.50	0.00	21.00	90.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	102.00	15.00	56.00	31.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAGC...........................	21	2	98.50	0.00	59.50	39.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	95.50	13.00	50.00	31.00	1.50
..........................................................................TCACAACCTCCTTGAGTGAGCT..........................	22	2	88.00	2.50	45.50	40.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	88.00	4.50	44.00	38.50	1.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	67.00	5.00	42.50	19.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGTT........................	24	2	62.50	0.50	40.00	22.00	0.00
..........................................................................TCACAACCTCCTTGAGTGCGC...........................	21	2	60.50	0.00	12.50	48.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATC...........................	21	2	56.00	1.00	25.00	30.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGA...........................	21	2	56.00	1.50	35.00	19.50	0.00
..............................ACTCACTCAACCTGGGTGT.........................................................................	19	2	53.50	0.00	26.00	27.50	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGC...........................	21	2	42.50	1.00	19.50	22.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAA........................	24	2	41.50	7.50	23.00	10.00	1.00
..........................................................................TCACAACCTCCTTGACTGAGC...........................	21	2	41.00	0.00	29.50	11.50	0.00
..........................................................................TCACAACCTCCTTGAGTTAGC...........................	21	2	40.50	0.50	12.50	27.50	0.00
.............................GACTCACTCAACCTGGGTGT.........................................................................	20	2	40.50	1.00	20.00	19.50	0.00
..........................................................................TCACAACCTCCTTGAGAGAGC...........................	21	2	40.50	0.00	33.50	7.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCG..........................	22	2	38.00	0.00	24.50	13.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCG............................	20	2	37.50	0.00	7.00	30.50	0.00
..........................................................................TCACAACCTCCTTGAGTGCGCG..........................	22	2	37.00	0.00	8.00	29.00	0.00
............................................................................ACAACCTCCTTGAGTGAG............................	18	2	35.00	0.00	22.50	12.00	0.50
..........................................................................TAACAACCTCCTTGAGTGAGC...........................	21	2	34.00	0.50	25.50	8.00	0.00
..........................................................................TCACAACCTCCTTGAGCGAG............................	20	2	33.50	0.00	19.50	14.00	0.00
..........................................................................TCACAACCTCCTTGAGTCAGC...........................	21	2	32.00	0.00	20.50	11.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCGA.........................	23	2	32.00	0.00	7.50	24.50	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGC...........................	21	2	30.00	1.00	18.00	11.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	29.00	5.50	14.00	9.00	0.50
...........................................................................CACAACCTCCTTGAGTGAGCGATT.......................	24	2	28.50	1.50	16.00	11.00	0.00
..........................................................................TCACAACCTCCTTGAGTGGGC...........................	21	2	28.50	0.00	16.00	12.50	0.00
..........................................................................TCGCAACCTCCTTGAGTGAGCG..........................	22	2	26.50	0.00	17.00	9.50	0.00
..........................................................................TCACAAACTCCTTGAGTGAGC...........................	21	2	26.00	0.00	18.00	8.00	0.00
..........................................................................TCACAACCTCCCTGAGTGAGC...........................	21	2	25.50	0.00	10.00	15.50	0.00
..........................................................................TCACAACCTCCGTGAGTGAGC...........................	21	2	25.00	0.00	19.50	5.50	0.00
..........................................................................TCACAACCTCCTTGGGTGAGC...........................	21	2	25.00	0.00	15.50	9.50	0.00
..............................ACTCACTCAACCTGGGTGTGT.......................................................................	21	2	25.00	0.00	13.50	11.50	0.00
..............................ACTCACTCAACCTGGGTGTGA.......................................................................	21	2	24.00	0.50	9.00	14.50	0.00
..........................................................................TCACAACCTCCTTGCGTGAGCGT.........................	23	2	23.50	0.00	6.00	17.50	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGCGA.........................	23	2	23.50	0.50	15.50	7.00	0.50
..........................................................................TCACAACCTCCTTGAGTGAGCA..........................	22	2	23.00	0.00	9.50	13.50	0.00
..........................................................................CCACAACCTCCTTGAGTGAGC...........................	21	2	23.00	0.00	15.00	8.00	0.00
............................................................................ACAACCTCCTTGAGTGAGCGT.........................	21	2	23.00	0.50	13.00	9.50	0.00
..........................................................................TCACAACCTCCTTCAGTGAGC...........................	21	2	23.00	0.00	14.50	8.50	0.00
..........................................................................TCACAACCTCCTTAAGTGAGC...........................	21	2	22.50	0.00	8.50	14.00	0.00
..........................................................................TCACAACCTCCTTGAGTGATCG..........................	22	2	22.50	1.50	13.00	8.00	0.00
...........................................................................CACAACCTCCTTGCGTGAGCG..........................	21	2	22.00	0.00	6.50	15.50	0.00
...........................................................................CACAACCTCCTTGAGCGAGC...........................	20	2	21.50	0.00	14.50	7.00	0.00
..........................................................................TCACAGCCTCCTTGAGTGAGCG..........................	22	2	21.00	0.50	11.00	9.00	0.50
..........................................................................TCACAACCTCCTTGAGTAAGC...........................	21	2	20.50	0.50	7.00	13.00	0.00
..........................................................................TCACGACCTCCTTGAGTGAGC...........................	21	2	20.50	0.00	12.00	8.50	0.00
..........................................................................TCACAATCTCCTTGAGTGAGC...........................	21	2	20.00	0.00	15.00	5.00	0.00
..........................................................................TCACAACCTCCTTGCGTGCGC...........................	21	2	20.00	0.00	2.00	18.00	0.00
...........................................................................CACAGCCTCCTTGAGTGAGCGA.........................	22	2	19.50	1.00	13.00	5.50	0.00
..........................................................................TCACAACCTCCTCGAGTGAGC...........................	21	2	19.00	0.00	12.50	6.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGCGATT.......................	25	2	18.50	1.00	9.50	8.00	0.00
..........................................................................TCACCACCTCCTTGAGTGAGC...........................	21	2	18.50	0.00	5.50	13.00	0.00
..........................................................................TCACAACCTCCTTTAGTGAGC...........................	21	2	18.50	0.00	9.00	9.50	0.00
..........................................................................TCACAACCTCCTTGAGGGAGC...........................	21	2	18.50	0.00	11.50	7.00	0.00
..........................................................................TCACAACCTCCTTGAGTGACC...........................	21	2	18.50	0.00	13.00	5.50	0.00
..........................................................................TCACAACCTCCTTGAGTGGGCG..........................	22	2	18.50	1.00	8.00	9.50	0.00
..........................................................................TCACAACCGCCTTGAGTGAGC...........................	21	2	18.00	0.00	13.00	5.00	0.00
..........................................................................TCACAACCTCCTTGATTGAGC...........................	21	2	17.50	0.50	11.00	6.00	0.00
..............................ACTCACTCAACCTGGGTGTG........................................................................	20	2	17.50	0.00	7.50	10.00	0.00
...........................................................................CACAACCTCCTTGCGTGAGC...........................	20	2	17.50	0.00	2.50	15.00	0.00
..........................................................................TCACAACCTCCTTGAGTTAG............................	20	2	16.50	0.00	4.00	12.50	0.00
..........................................................................TCACAACCTCCTTGAGCGAGCGA.........................	23	2	16.50	1.00	11.50	3.00	1.00
..........................................................................TCGCAACCTCCTTGAGTGAGCGA.........................	23	2	16.00	1.50	9.50	5.00	0.00
..........................................................................TCACAACCTCCTTGACTGAG............................	20	2	16.00	0.00	6.50	9.50	0.00
..........................................................................TCACAACCTCCTTGAGTGGG............................	20	2	15.50	0.00	9.50	6.00	0.00
..........................................................................TCACAACCCCCTTGAGTGAGC...........................	21	2	15.00	0.00	9.00	6.00	0.00
...........................................................................CACAACCTCCTTGAGTGCGCG..........................	21	2	15.00	0.00	4.00	11.00	0.00
...........................................................................CACAGCCTCCTTGAGTGAGCG..........................	21	2	15.00	1.50	8.50	5.00	0.00
..............................ACTCACTCAACCTGGGTGTGAT......................................................................	22	2	14.50	0.00	6.00	7.50	1.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAAA.......................	25	2	14.50	4.00	7.00	3.50	0.00
...........................................................................CACAACCTCCTTGAGTGAGCGAA........................	23	2	14.50	3.00	7.50	4.00	0.00
..........................................................................TCACAACCTCCTTGAGTGAT............................	20	2	14.50	0.00	7.50	7.00	0.00
..........................................................................TCACAACCTCCTTGGGTGAGCG..........................	22	2	14.50	0.00	7.50	7.00	0.00
..........................................................................TCACAACCTCCTTGAATGAGC...........................	21	2	14.00	0.50	7.50	6.00	0.00
..........................................................................TCACACCCTCCTTGAGTGAGC...........................	21	2	14.00	0.00	5.50	8.50	0.00
..........................................................................TCACAACCTCCTTGAGTGAGTG..........................	22	2	14.00	0.00	8.00	6.00	0.00
..........................................................................TCACAACCTCCTTGAGAGAG............................	20	2	13.50	0.00	10.00	3.50	0.00
...........................................................................CACAACCTCCTTGAGCGAGCG..........................	21	2	13.50	0.50	9.50	3.50	0.00
...........................................................................CACAACCTCCTTGAGTCAGC...........................	20	2	13.00	0.00	8.00	5.00	0.00
..........................................................................TCACAACCTCATTGAGTGAGC...........................	21	2	13.00	0.00	9.00	4.00	0.00
..........................................................................TCGCAACCTCCTTGAGTGAG............................	20	2	13.00	0.00	7.50	5.50	0.00

droGri2

ttCT-----AAACA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATTTGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAA-GA	Size	Hit Count	Total Norm	V109 Male body
..........................................................................TCACAACCTCCTTGAGTGAGCGA.........................	23	2	346.50	346.50
..........................................................................TCACAACCTCCTTGAGTGAGCG..........................	22	2	334.00	334.00
..........................................................................TCACAACCTCCTTGAGTGAGC...........................	21	2	107.50	107.50
...........................................................................CACAACCTCCTTGAGTGAGCGA.........................	22	2	100.00	100.00
...........................................................................CACAACCTCCTTGAGTGAGCG..........................	21	2	37.00	37.00
..........................................................................TCACAACCTCCTTGAGTGAGCGT.........................	23	2	18.00	18.00
............................................................................ACAACCTCCTTGAGTGAGCGA.........................	21	2	14.50	14.50
...........................................................................CACAACCTCCTTGAGTGAGC...........................	20	2	12.50	12.50
..........................................................................TCACAACCTCCTTGAGTGAG............................	20	2	8.00	8.00
...........................................................................CACAACCTCCTTGAGTGAGCGAT........................	23	2	7.50	7.50
..........................................................................TCACAACCTCCTTGAGTCAGCG..........................	22	2	5.50	5.50
..........................................................................TCACAACCTCCTTGAGTGAGCGC.........................	23	2	5.00	5.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAT........................	24	2	5.00	5.00
..........................................................................TCACAACCTCCTTGAGTAAGCG..........................	22	2	4.00	4.00
..........................................................................TCACAACCTCCTTGAGTCAGCGA.........................	23	2	3.00	3.00
..........................................................................TCACAACCTCCTTGAGTGAGCGG.........................	23	2	3.00	3.00
............................................................................ACAACCTCCTTGAGTGAGCG..........................	20	2	3.00	3.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAA........................	24	2	3.00	3.00
...........................................................................CACAACCTCCTTGAGTGAGCGT.........................	22	2	2.50	2.50
..........................................................................TCACAACCTCCTTGAGTTAGCG..........................	22	2	2.50	2.50
..........................................................................TCACAACCTCCTTGAGTCAGC...........................	21	2	2.00	2.00
...........................................................................CACAACCTCCTTGAGTGAGCGAA........................	23	2	2.00	2.00
..........................................................................TCACAACCTCCTTGAGTGAGCGAAA.......................	25	2	2.00	2.00
..........................................................................TCACAACCCCCTTGAGTGAGCGA.........................	23	2	1.50	1.50
..........................................................................TCACAACCTCCTTGAGTTAGCGA.........................	23	2	1.50	1.50
..........................................................................TCACAACCTCCTTGAGTGAGCGATT.......................	25	2	1.50	1.50
..........................................................................TCTCAACCTCCTTGAGTGAGCG..........................	22	2	1.50	1.50
..........................................................................TCCCAACCTCCTTGAGTGAGCGA.........................	23	2	1.50	1.50
..........................................................................TCACAACCTCCTTGAGTTAGC...........................	21	2	1.50	1.50
..........................................................................TCACAACCTCCTTGAGTGCGCGA.........................	23	2	1.50	1.50

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image