dme-mir-304- Best orthologs

dme-mir-304	chrX:15402992-15403079 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 15403003-15403025
   star strand at position 15403049-15403070
   mutations
   read mismatches

Notes: droPer1 ortholog may lie in a gap region of the which is located at super_26:1091883-1092236.

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chrX:15402977-15403094 +		1	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droSim1	chrX_random:4023795-4023912 +	LASTZ	1	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droSec1	super_73:137399-137516 +	LASTZ	1	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droYak2	chrX:9589334-9589451 +	LASTZ	1	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droEre2	scaffold_4690:11631458-11631575 -	LASTZ	1	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droEug1	scf7180000409533:552249-552366 +	LASTZ	4	ATACGAAATGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droBia1	scf7180000302041:37384-37489 +	LASTZ	4	------------TCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCC-TTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCCTATGCCACA--TT
droTak1	scf7180000414432:173339-173453 +	LASTZ	4	----CAATTATATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCAATC-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droEle1	scf7180000491023:1179149-1179266 -	LASTZ	4	ATACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTCGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droRho1	scf7180000777097:73960-74077 -	LASTZ	4	ATACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droFic1	scf7180000454038:646941-647056 +	LASTZ	4	---CGAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTA-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droKik1	scf7180000302696:761091-761202 +	LASTZ	4	TT-----TTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTCGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATTTGCCACA--T-
droAna3	scaffold_12929:2899093-2899202 -	LASTZ	1	-----------ATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCCATTTGACGGACTCACTTTGCAACTGGAGATTGCTCGAGACTGCGGCATATGCCACAAAGT
droBip1	scf7180000396740:80831-80939 -	LASTZ	4	------------TCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCCATTTGAGGGACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCCTATGCCACAAATT
dp4	chrXL_group1a:977383-977495 +	LASTZ	1	------ACTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGGCATTTGACACACTCACTTTGCAACTGGAGATTGCTCGAAACTGCGGCACATGCCACA--TT
droPer1	Unknown		0	-------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_180702:1593181-1593292 -	LASTZ	1	-------TTGTATCTGTAACATTGATTAATCTCAATTTGTAAATGTGAGCGATTTAAATCCATTCGATGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT
droVir3	scaffold_12970:2048738-2048856 +	LASTZ	1	TTGTTAAACTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTAAAGTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCTTATGCCACA--TA
droMoj3	scaffold_6359:3259146-3259264 +	LASTZ	1	GTCCAACTCTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTTAACTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCAGCATATGCCACA--TT
droGri2	scaffold_14853:6952274-6952391 -	LASTZ	1	TTGTTAACT-TATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATTATTAAGAATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droSim1	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droSec1	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droYak2	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droEre2	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droEug1	ATACGAAATGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droBia1	------------TCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCC-TTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCCTATGCCACA--TT
droTak1	----CAATTATATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCAATC-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droEle1	ATACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTCGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droRho1	ATACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droFic1	---CGAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTA-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droKik1	TT-----TTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTCGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATTTGCCACA--T-
droAna3	-----------ATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCCATTTGACGGACTCACTTTGCAACTGGAGATTGCTCGAGACTGCGGCATATGCCACAAAGT
droBip1	------------TCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCCATTTGAGGGACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCCTATGCCACAAATT
dp4	------ACTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGGCATTTGACACACTCACTTTGCAACTGGAGATTGCTCGAAACTGCGGCACATGCCACA--TT
droWil1	-------TTGTATCTGTAACATTGATTAATCTCAATTTGTAAATGTGAGCGATTTAAATCCATTCGATGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT
droVir3	TTGTTAAACTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTAAAGTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCTTATGCCACA--TA
droMoj3	GTCCAACTCTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTTAACTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCAGCATATGCCACA--TT
droGri2	TTGTTAACT-TATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATTATTAAGAATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image																None
UNAFold Image																None

Small RNA-seq read pileup

Species

Alignment

droSim1

GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................TAATCTCAATTTGTAAATGTGAG........................................................................	23	2	537.00	322.00	59.50	124.00	31.50
..........................TAATCTCAATTTGTAAATGTGA.........................................................................	22	2	266.00	19.00	92.50	144.00	10.50
.........................................................................CACTTTGCAATTGGAGATTGCT..........................	22	2	255.00	156.50	34.00	29.00	35.50
........................................................................TCACTTTGCAATTGGAGATTG............................	21	2	149.50	0.50	72.50	69.00	7.50
..........................TAATCTCAATTTGTAAATGTGG.........................................................................	22	2	46.00	0.00	13.50	29.50	3.00
........................................................................TCACTTTGCAATTGGAGATTGCT..........................	23	2	32.00	10.00	10.00	5.00	7.00
.........................................................................CACTTTGCAATTGGAGATTGC...........................	21	2	27.00	4.50	10.00	3.00	9.50
..........................TAATCTCAATTTGTAAATG............................................................................	19	2	26.50	0.00	12.00	13.00	1.50
..........................TAATCTCAATTTGTAAATGTG..........................................................................	21	2	23.00	0.00	13.00	9.00	1.00
.................................................CGGTT-TGAGCCATTTGACGCACT................................................	23	2	16.00	0.00	4.00	4.50	7.50
..........................TAATCTCAATTTGTAAATGTGAGA.......................................................................	24	2	13.00	2.00	4.50	5.50	1.00
........................................................................TCACTTTGCAATTGGAGATTGC...........................	22	2	11.00	0.50	5.50	3.50	1.50
.........................................................................CACTTTGCAATTGGAGATTGCC..........................	22	2	10.00	0.50	5.00	1.00	3.50
..........................TAATCTCAATTTGTAAATGT...........................................................................	20	2	8.00	0.00	5.50	2.50	0.00
..........................TAATCTCAATTTGTAAATGTGAGT.......................................................................	24	2	7.50	0.50	4.00	3.00	0.00
..........................TAATCTCAATTTGTAAATGTGAC........................................................................	23	2	7.50	0.50	2.00	4.00	1.00
........................................................................TCACTTTGCAATTGGAGATTGT...........................	22	2	7.00	0.00	2.50	3.50	1.00
.........................................................................CACTTTGCAATTGGAGATTG............................	20	2	5.00	0.50	2.00	2.50	0.00
........................................................................TCACTTTGCAATTGGAGATTGTT..........................	23	2	4.50	0.00	2.50	2.00	0.00
.........................................................................CACTTTGCAATTGGAGATTGTT..........................	22	2	4.50	0.50	1.50	1.50	1.00
..............................CTCAATTTGTAAATGTGA.........................................................................	18	2	3.50	1.50	1.00	1.00	0.00
..........................................................................ACTTTGCAATTGGAGATTG............................	19	2	3.00	0.00	1.00	2.00	0.00
........................................................................TCACTTTGCAATTGGGGATTG............................	21	2	3.00	0.00	2.50	0.50	0.00
.........................................................................CACTTTGCAATTGGAGATTGCG..........................	22	2	3.00	0.50	1.00	0.50	1.00
..........................TAATCTCAATTTGTAAATGTTAG........................................................................	23	2	3.00	3.00	0.00	0.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGA...........................	22	2	3.00	0.00	1.00	2.00	0.00
..........................TAATATCAATTTGTAAATGTGAG........................................................................	23	2	2.50	2.50	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGCTTGCT..........................	22	2	2.50	2.50	0.00	0.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGCC..........................	23	2	2.50	0.00	1.00	1.00	0.50
..........................TAATCTCAATTTGTAAATGTGAT........................................................................	23	2	2.00	1.00	0.50	0.50	0.00
...........................AATCTCAATTTGTAAATGTGAG........................................................................	22	2	2.00	0.50	1.00	0.50	0.00
.................................................CGGTT-TGAGCCATTTGACGCACC................................................	23	2	2.00	0.00	0.00	1.50	0.50
..........................................................................ACTTTGCAATTGGAGATTGCTC.........................	22	2	2.00	0.00	0.50	0.50	1.00
.........................................................................CACTTTGCAATTGGAGATTGTA..........................	22	2	2.00	0.00	1.00	1.00	0.00
.........................................................................CACTTTGCAATTGGAGGTTGCT..........................	22	2	2.00	2.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAGC.......................................................................	24	2	1.50	0.50	0.50	0.50	0.00
.........................................................................CACTTTTCAATTGGAGATTGCT..........................	22	2	1.50	0.00	0.00	0.50	1.00
..........................................................................ACTTTGCAATTGGAGATTGCT..........................	21	2	1.50	1.00	0.50	0.00	0.00
.........................................................................CACTTTCCAATTGGAGATTGCT..........................	22	2	1.50	0.00	0.00	0.00	1.50
..........................TAATCTCAATTTGTAAATGTGAGG.......................................................................	24	2	1.50	0.00	0.50	1.00	0.00
.........................................................................CACTTTGCAATTGGCGATTGCT..........................	22	2	1.50	1.50	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGATTGCTT.........................	23	2	1.50	0.00	0.50	1.00	0.00
..........................TAGTCTCAATTTGTAAATGTGAG........................................................................	23	2	1.50	1.00	0.00	0.50	0.00
..........................TAATCTCAATTTGTAAATGTGGG........................................................................	23	2	1.50	0.00	0.50	0.50	0.50
..........................TAATCTCAATTTGTAAATGTAAG........................................................................	23	2	1.50	1.50	0.00	0.00	0.00
.............................TCTCAATTTGTAAATGTGAGC.......................................................................	21	2	1.50	0.00	1.50	0.00	0.00
..........................TAATCTCAATTTTTAAATGTGA.........................................................................	22	2	1.50	0.00	0.50	0.00	1.00
.....................................................................CACTCACTTTGCAATTGGAG................................	20	2	1.50	0.00	1.00	0.50	0.00
.........................................................................CACTTTGCAATTGGGGATTGCT..........................	22	2	1.50	0.50	1.00	0.00	0.00

droSec1

GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................TAATCTCAATTTGTAAATGTGAG........................................................................	23	3	2160.00	683.33	1030.00	446.67
.........................................................................CACTTTGCAATTGGAGATTGCT..........................	22	3	1833.00	872.00	839.33	121.67
..........................TAATCTCAATTTGTAAATGTGA.........................................................................	22	3	119.67	53.67	23.33	42.67
..........................TAATCTCAATTTGTAAATGTGAGT.......................................................................	24	3	93.00	67.67	7.00	18.33
........................................................................TCACTTTGCAATTGGAGATTGCT..........................	23	3	86.33	50.67	23.67	12.00
.........................................................................CACTTTGCAATTGGAGATTGC...........................	21	3	57.00	20.00	32.33	4.67
........................................................................TCACTTTGCAATTGGAGATTG............................	21	3	45.33	27.33	8.67	9.33
........................................................................TCACTTTGCAATTGGAGATTGC...........................	22	3	24.00	11.00	10.00	3.00
..........................................................................ACTTTGCAATTGGAGATTGCT..........................	21	3	13.67	11.67	1.33	0.67
.........................................................................CACTTTGCAATTGGAGATTG............................	20	3	12.67	9.67	1.33	1.67
..........................TAATCTCAATTTGTAAATGT...........................................................................	20	3	9.67	7.33	1.33	1.00
..........................TAATCTTAATTTGTAAATGTGAG........................................................................	23	3	7.67	0.33	7.00	0.33
..........................TAATCTCAATTTGTAAATGTGAGA.......................................................................	24	3	7.33	2.33	3.00	2.00
..........................TAATCTCAATTTGTAAATATGAG........................................................................	23	3	7.00	4.33	2.00	0.67
.........................................................................CACTTTGCAATTGGAGATTGCTT.........................	23	3	7.00	6.33	0.00	0.67
..........................TAATCTCAATTTGTAAATGTGAGC.......................................................................	24	3	6.67	2.67	2.67	1.33
.........................................................................CACTTTGCAATTGGAGATAGCT..........................	22	3	6.33	6.00	0.00	0.33
.........................................................................CACTTTGCAATTGGAGATCGCT..........................	22	3	6.33	6.00	0.33	0.00
..........................TAATCTCAATTTGTAAATGTGT.........................................................................	22	3	6.00	5.33	0.00	0.67
..........................TAATCTCAATTTGTAAATCTGAG........................................................................	23	3	6.00	5.00	0.67	0.33
..........................TAATTTCAATTTGTAAATGTGAG........................................................................	23	3	5.67	0.00	4.67	1.00
..........................TAATCTCAATTTGTAAATTTGAG........................................................................	23	3	5.33	4.33	0.67	0.33
..........................TAATCTCAATTTGTxAATGTGAG........................................................................	22	3	5.33	0.67	4.00	0.67
..........................TAATCTCAATTTGTAAATGTGAA........................................................................	23	3	5.33	1.67	1.33	2.33
........................................................................TCACTTTGCAATTGGAGATTGT...........................	22	3	5.00	4.00	0.67	0.33
..........................TAATCTCxATTTGTAAATGTGAG........................................................................	22	3	4.67	0.00	3.67	1.00
.........................................................................CACTTTGCAATTGGAGATTGTT..........................	22	3	4.67	2.33	2.00	0.33
..........................TAATCTCAATTTGTAAATGTG..........................................................................	21	3	4.33	2.33	0.00	2.00
.........................................................................CACTTTGCAATTGGGGATTGCT..........................	22	3	4.00	1.00	2.67	0.33
...........................AATCTCAATTTGTAAATGTGAG........................................................................	22	3	3.67	2.00	1.33	0.33
.........................................................................CACTTTGCAATTGGAGGTTGCT..........................	22	3	3.67	1.67	1.67	0.33
.........................................................................CACTTTGCAACTGGAGATTGCT..........................	22	3	3.33	2.67	0.67	0.00
.........................................................................CACxTTGCAATTGGAGATTGCT..........................	21	3	3.33	0.67	2.67	0.00
.......TTGTATCTGCAGCATTGAA...............................................................................................	19	2	5.00	0.00	5.00	0.00
.........................................................................CACTTTGCAATTGGCGATTGCT..........................	22	3	3.33	1.00	2.00	0.33
..........................TAATCTCAACTTGTAAATGTGAG........................................................................	23	3	3.00	1.00	1.33	0.67
..........................TAATCTAAATTTGTAAATGTGAG........................................................................	23	3	3.00	0.33	0.33	2.33
.........................................................................CACTTTGCAATTGGAGACTGCT..........................	22	3	3.00	1.00	2.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGA...........................	22	3	3.00	2.00	0.00	1.00
.........................................................................CGCTTTGCAATTGGAGATTGCT..........................	22	3	2.67	1.00	1.00	0.67
..........................TAACCTCAATTTGTAAATGTGAG........................................................................	23	3	2.67	0.33	2.00	0.33
.......................................................................CTCACTTTGCAATTGGAGATTG............................	22	3	2.67	2.00	0.33	0.33
.............................TCTCAATTTGTAAATGTGAGCGG.....................................................................	23	3	2.67	0.67	1.33	0.67
..........................TAATCTCAATCTGTAAATGTGAG........................................................................	23	3	2.67	1.00	1.33	0.33
.........................................................................CACTTTGCAATTGGAGATGGCT..........................	22	3	2.67	2.33	0.00	0.33
.........................................................................CACTTTGCAATTGGAGATTGCC..........................	22	3	2.33	0.33	1.33	0.67
..........................TGATCTCAATTTGTAAATGTGAG........................................................................	23	3	2.33	0.00	2.33	0.00
..........................TAATCTCAATTTGTAAATGTGGG........................................................................	23	3	2.33	0.33	1.33	0.67
...............................TCAATTTGTAAATGTGAGCGGTT-T.................................................................	24	3	2.33	0.00	2.00	0.33
...........................................................................CTTTGCAATTGGAGATTGCT..........................	20	3	2.33	1.00	0.67	0.67
.........................................................................TACTTTGCAATTGGAGATTGCT..........................	22	3	2.33	0.67	1.67	0.00
.........................CTAATCTCAATTTGTAAATGTGAG........................................................................	24	3	2.33	0.00	1.67	0.67
..........................TAATCTCCATTTGTAAATGTGAG........................................................................	23	3	2.00	1.00	1.00	0.00
..........................TAATCTCAATTTGTxxATGTGAG........................................................................	21	3	2.00	1.00	1.00	0.00
..........................TAATCTCAATTTGTAAGTGTGAG........................................................................	23	3	2.00	0.00	2.00	0.00
.........................................................................CACTTTGTAATTGGAGATTGCT..........................	22	3	2.00	1.00	1.00	0.00
..........................TAATCTCAATTTGTAAATGTAAG........................................................................	23	3	2.00	1.00	0.33	0.67
..........................TAATCCCAATTTGTAAATGTGAG........................................................................	23	3	2.00	1.00	0.67	0.33
............................ATCTCAATTTGTAAATGTGAG........................................................................	21	3	2.00	0.00	1.67	0.33
.........................................................................CACTTCGCAATTGGAGATTGCT..........................	22	3	2.00	0.67	1.00	0.33
..........................TAATCTCGATTTGTAAATGTGAG........................................................................	23	3	2.00	1.00	1.00	0.00
..........................TAATCTCAATTTGTAGATGTGAG........................................................................	23	3	1.67	0.33	1.00	0.33
.........................................................................CACTTTGCACTTGGAGATTGCT..........................	22	3	1.67	1.00	0.67	0.00
.........................................................................CACTTTGCAATTGGAGATTGCA..........................	22	3	1.67	1.33	0.33	0.00
.........................................................................CACTTTCCAATTGGAGATTGCT..........................	22	3	1.67	0.67	1.00	0.00
.........................................................................CACTTTGCGATTGGAGATTGCT..........................	22	3	1.67	1.00	0.67	0.00
..........................TAATCTCAATTTGTAAATGTGCG........................................................................	23	3	1.67	1.00	0.33	0.33
..........................TAGTCTCAATTTGTAAATGTGAG........................................................................	23	3	1.67	0.00	1.00	0.67
..........................TAATCTCAATTTGTAAATGCGAG........................................................................	23	3	1.67	0.33	0.67	0.67
.........................................................................CACCTTGCAATTGGAGATTGCT..........................	22	3	1.67	1.00	0.67	0.00
.........................................................................CACTTTGCAATTGCAGATTGCT..........................	22	3	1.33	0.33	1.00	0.00
..........................TAATCTCAATTCGTAAATGTGAG........................................................................	23	3	1.33	0.33	0.67	0.33
........................................................................TCACTTTGCAATTGGAGATT.............................	20	3	1.33	1.00	0.00	0.33
.........................................................................CACTTTGAAATTGGAGATTGCT..........................	22	3	1.33	0.33	0.00	1.00
.........................................................................CACTTTGCAATTGGAGCTTGCT..........................	22	3	1.33	0.67	0.33	0.33
..........................TAATCTCAATTTGTAAATGAGAG........................................................................	23	3	1.33	0.33	0.33	0.67
.........................................................................CACTTTGCAATTGGAGATTTCT..........................	22	3	1.33	1.00	0.33	0.00
..........................TAATCTCAATTTGTGAATGTGAG........................................................................	23	3	1.33	0.33	0.33	0.67
..........................TAATCTCAATTTCTAAATGTGAG........................................................................	23	3	1.33	0.33	0.67	0.33
.........................................................................CACTTTGCxATTGGAGATTGCT..........................	21	3	1.33	0.00	1.33	0.00
..........................TAATCTCAATTTGTAAATGTGAGTT......................................................................	25	3	1.33	1.00	0.00	0.33
..........................TAATCTCAATTTGTAAATGTGAC........................................................................	23	3	1.33	0.33	1.00	0.00
..........................TAATCTCAATTTGTCAATGTGAG........................................................................	23	3	1.33	0.00	1.00	0.33
..........................TAATCTCAATTTGTAAATGTTAG........................................................................	23	3	1.33	0.33	0.33	0.67
..........................TAATCTCAAATTGTAAATGTGAG........................................................................	23	3	1.33	0.00	1.00	0.33
...............................TCAATTTGTAAATGTGAG........................................................................	18	3	1.33	0.00	1.00	0.33
.........................................................................CACTTTGCAATTGxxGATTGCT..........................	20	3	1.33	0.67	0.67	0.00
.......................................................................CTCACTTTGCAATTGGAGATTGCT..........................	24	3	1.33	0.33	0.67	0.33
..........................TAATCTCAATTTGTAACTGTGAG........................................................................	23	3	1.00	0.67	0.33	0.00
...................................................................CGCACTCACTTTGCAATTGGAG................................	22	3	1.00	0.00	1.00	0.00
.........................................................................CACTTTGCAATTGGAGATTGT...........................	21	3	1.00	0.33	0.33	0.33
.........................................................................CACTTTTCAATTGGAGATTGCT..........................	22	3	1.00	1.00	0.00	0.00
..........................TAATCTCAATTTGTTAATGTGAG........................................................................	23	3	1.00	0.33	0.67	0.00
..............................CTCAATTTGTAAATGTGAG........................................................................	19	3	1.00	0.67	0.33	0.00
..........................TAATCTCATTTTGTAAATGTGAG........................................................................	23	3	1.00	0.00	1.00	0.00
..........................................................................ACTTTGCAATTGGAGATTG............................	19	3	1.00	1.00	0.00	0.00
.........................................................................CCCTTTGCAATTGGAGATTGCT..........................	22	3	1.00	0.33	0.67	0.00
..........................TAATCTCACTTTGTAAATGTGAG........................................................................	23	3	1.00	0.33	0.33	0.33
..........................TAATCTCAATTTGTAAATGTCAG........................................................................	23	3	1.00	0.67	0.00	0.33
.......................................................................CTCACTTTGCAATTGGAGATTGC...........................	23	3	1.00	0.33	0.67	0.00
.................................................CGGTT-TGAGCCATTTGACGCACT................................................	23	3	1.00	0.33	0.67	0.00

droYak2

GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................TAATCTCAATTTGTAAATGTGAG........................................................................	23	1	952.00	239.00	35.00	503.00	163.00	12.00
.........................................................................CACTTTGCAATTGGAGATTGCT..........................	22	1	787.00	240.00	20.00	491.00	34.00	2.00
..........................TAATCTCAATTTGTAAATGTGA.........................................................................	22	1	66.00	15.00	4.00	21.00	8.00	18.00
........................................................................TCACTTTGCAATTGGAGATTGCT..........................	23	1	56.00	2.00	2.00	48.00	2.00	2.00
..........................TAATCTCAATTTGTAAATGTGAGT.......................................................................	24	1	38.00	1.00	1.00	26.00	10.00	0.00
.........................................................................CACTTTGCAATTGGAGATTGC...........................	21	1	26.00	7.00	0.00	15.00	2.00	2.00
........................................................................TCACTTTGCAATTGGAGATTG............................	21	1	16.00	0.00	1.00	6.00	1.00	8.00
..........................TAATCTCAATTTGTAAATGTTAG........................................................................	23	1	15.00	1.00	4.00	1.00	9.00	0.00
.........................................................................CACTTTGCAATTGGAGATTG............................	20	1	14.00	0.00	0.00	13.00	0.00	1.00
..........................TAATCTCAATTTGTAAATGT...........................................................................	20	1	8.00	0.00	0.00	7.00	1.00	0.00
..........................TAATCTCAATTTGTAAATGTGAT........................................................................	23	1	7.00	0.00	2.00	1.00	4.00	0.00
..........................................................................ACTTTGCAATTGGAGATTGCT..........................	21	1	7.00	2.00	0.00	4.00	1.00	0.00
..........................TAATCTCAATTTGTAAATGTGCG........................................................................	23	1	6.00	1.00	0.00	1.00	4.00	0.00
.........................................................................CACTTTGCAATTGGCGATTGCT..........................	22	1	5.00	0.00	0.00	2.00	3.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGC...........................	22	1	5.00	0.00	0.00	4.00	1.00	0.00
.........................................................................CACTTTGCAATTGGAGCTTGCT..........................	22	1	5.00	4.00	0.00	0.00	1.00	0.00
.........................................................................CACTTTGCAATTGGGGATTGCT..........................	22	1	4.00	1.00	0.00	1.00	2.00	0.00
..........................TAATCTCAATTTGTAAGTGTGAG........................................................................	23	1	3.00	1.00	0.00	0.00	2.00	0.00
..........................CAATCTCAATTTGTAAATGTGAG........................................................................	23	1	3.00	2.00	1.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAGA.......................................................................	24	1	3.00	0.00	0.00	2.00	0.00	1.00
.........................................................................CACTTTGCAATTCGAGATTGCT..........................	22	1	3.00	0.00	1.00	2.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGG.........................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................TAATCTCAATTTGTAAATGTGTG........................................................................	23	1	3.00	1.00	0.00	0.00	2.00	0.00
.......................................................................CTCACTTTGCAATTGGAGATTGCT..........................	24	1	3.00	0.00	0.00	3.00	0.00	0.00

droEre2

GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................TAATCTCAATTTGTAAATGTGAG........................................................................	23	1	5602.00	335.00	600.00	0.00	4667.00
.........................................................................CACTTTGCAATTGGAGATTGCT..........................	22	1	1305.00	145.00	120.00	0.00	1040.00
..........................TAATCTCAATTTGTAAATGTGA.........................................................................	22	1	472.00	23.00	40.00	0.00	409.00
..........................TAATCTCAATTTGTAAATGTGAGT.......................................................................	24	1	144.00	0.00	17.00	0.00	127.00
..........................TAATCTCAATTTGTAAATGTTAG........................................................................	23	1	89.00	29.00	23.00	0.00	37.00
..........................TAATCTCAATTTGTAAATGTGAT........................................................................	23	1	79.00	11.00	15.00	0.00	53.00
.........................................................................CACTTTGCAATTGGAGATTGC...........................	21	1	44.00	4.00	5.00	0.00	35.00
..........................TAATCTCAATTTGTAAATGTGAC........................................................................	23	1	44.00	1.00	1.00	0.00	42.00
..........................TAATCTCAATTTGTAAATTTGAG........................................................................	23	1	39.00	8.00	6.00	0.00	25.00
..........................TAATCTCAATTTGTAAATGTGAA........................................................................	23	1	39.00	0.00	1.00	0.00	38.00
..........................TAATCTAAATTTGTAAATGTGAG........................................................................	23	1	38.00	2.00	0.00	0.00	36.00
........................................................................TCACTTTGCAATTGGAGATTG............................	21	1	33.00	1.00	0.00	0.00	32.00
........................................................................TCACTTTGCAATTGGAGATTGCT..........................	23	1	28.00	7.00	2.00	0.00	19.00
..........................TAATATCAATTTGTAAATGTGAG........................................................................	23	1	22.00	0.00	0.00	0.00	22.00
..........................TAATCTCAATTTTTAAATGTGAG........................................................................	23	1	19.00	3.00	0.00	0.00	16.00
..........................TAATCTCAATTTGTAAATGT...........................................................................	20	1	18.00	1.00	3.00	0.00	14.00
.........................................................................AACTTTGCAATTGGAGATTGCT..........................	22	1	16.00	0.00	1.00	0.00	15.00
..........................TAATCTCAATTTGTAAATGTG..........................................................................	21	1	14.00	0.00	2.00	0.00	12.00
.........................................................................CACTTTGCAATTGGAGATTTCT..........................	22	1	14.00	6.00	1.00	0.00	7.00
..........................TAATCTCAATTTGTAAATGCGAG........................................................................	23	1	14.00	0.00	2.00	0.00	12.00
.........................................................................CACTTTGCAATTTGAGATTGCT..........................	22	1	13.00	1.00	0.00	0.00	12.00
..........................TAATCTCAATTTGTAAATGTGAGA.......................................................................	24	1	12.00	1.00	1.00	0.00	10.00
.........................................................................CACTTTGCAACTGGAGATTGCT..........................	22	1	11.00	10.00	0.00	0.00	1.00
.........................ATAATCTCAATTTGTAAATGTGAG........................................................................	24	1	11.00	0.00	2.00	0.00	9.00
.........................................................................CACTTTGCAATTGGAGATTG............................	20	1	11.00	2.00	0.00	0.00	9.00
..........................TAATCTCAATTTGTAAATGTGAGC.......................................................................	24	1	10.00	0.00	1.00	0.00	9.00
..........................TAGTCTCAATTTGTAAATGTGAG........................................................................	23	1	10.00	1.00	1.00	0.00	8.00
.........................................................................CACTTTGCAATTGGATATTGCT..........................	22	1	10.00	1.00	0.00	0.00	9.00
.........................................................................CACTTTGCAATTGTAGATTGCT..........................	22	1	9.00	2.00	1.00	0.00	6.00
..........................................................................ACTTTGCAATTGGAGATTGCT..........................	21	1	9.00	0.00	3.00	0.00	6.00
...........................AATCTCAATTTGTAAATGTGAG........................................................................	22	1	9.00	1.00	1.00	0.00	7.00
..........................TATTCTCAATTTGTAAATGTGAG........................................................................	23	1	9.00	0.00	0.00	0.00	9.00
...............................TCAATTTGTAAATGTGAG........................................................................	18	1	9.00	0.00	0.00	0.00	9.00
..........................TAACCTCAATTTGTAAATGTGAG........................................................................	23	1	8.00	0.00	0.00	0.00	8.00
..........................TACTCTCAATTTGTAAATGTGAG........................................................................	23	1	8.00	0.00	0.00	0.00	8.00
..........................TAATCTCAATTTGTAAATGTGGG........................................................................	23	1	8.00	0.00	1.00	0.00	7.00
.........................CTAATCTCAATTTGTAAATGTGAG........................................................................	24	1	8.00	1.00	0.00	0.00	7.00
..........................TAATCTCAATTTGTACATGTGAG........................................................................	23	1	8.00	2.00	0.00	0.00	6.00
..........................TAATCTCAATTTGTAACTGTGAG........................................................................	23	1	7.00	0.00	2.00	0.00	5.00
..........................TAATCTCAATTCGTAAATGTGAG........................................................................	23	1	7.00	1.00	1.00	0.00	5.00
.........................................................................CACTTTTCAATTGGAGATTGCT..........................	22	1	7.00	1.00	0.00	0.00	6.00
.........................................................................CAATTTGCAATTGGAGATTGCT..........................	22	1	7.00	2.00	0.00	0.00	5.00
..........................TAATCCCAATTTGTAAATGTGAG........................................................................	23	1	7.00	0.00	0.00	0.00	7.00
..........................TAATCTCAATTTGTAAATCTGAG........................................................................	23	1	7.00	0.00	1.00	0.00	6.00
..........................TAATCTCAATTTGTAAACGTGAG........................................................................	23	1	7.00	0.00	1.00	0.00	6.00
..........................TAATTTCAATTTGTAAATGTGAG........................................................................	23	1	6.00	2.00	0.00	0.00	4.00
..........................TAATCTCACTTTGTAAATGTGAG........................................................................	23	1	6.00	1.00	2.00	0.00	3.00
..........................TAATCTCAATTTGTAAATGTGT.........................................................................	22	1	6.00	0.00	1.00	0.00	5.00
..........................TAATCTCAATTTGTAAATGTTAT........................................................................	23	1	6.00	4.00	1.00	0.00	1.00
............................ATCTCAATTTGTAAATGTGAG........................................................................	21	1	6.00	0.00	0.00	0.00	6.00
..........................TAATCTTAATTTGTAAATGTGAG........................................................................	23	1	6.00	0.00	0.00	0.00	6.00
..........................TAAGCTCAATTTGTAAATGTGAG........................................................................	23	1	5.00	0.00	2.00	0.00	3.00
..........................TAATCTCAATTTGTAAATGTCAG........................................................................	23	1	5.00	1.00	0.00	0.00	4.00
.........................................................................CACTTTGCAATTGGAGATTGAT..........................	22	1	5.00	0.00	0.00	0.00	5.00
..........................TAATCTCAATTTGTAAGTGTGAG........................................................................	23	1	5.00	0.00	1.00	0.00	4.00
.......TTGTATCTGCAGCATTGAA...............................................................................................	19	1	5.00	3.00	0.00	0.00	2.00
..........................TAATCTCAATTTGTGAATGTGAG........................................................................	23	1	5.00	1.00	0.00	0.00	4.00
..........................TAATCTCAATTTGTAAATGTAAG........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
..........................TAATCTCAATTTGCAAATGTGAG........................................................................	23	1	5.00	0.00	1.00	0.00	4.00
..........................TAATCTCGATTTGTAAATGTGAG........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
.........................................................................CACTTTGCAATTGGGGATTGCT..........................	22	1	5.00	0.00	0.00	0.00	5.00
........................................................................TCACTTTGCAATTGGAGATTGC...........................	22	1	4.00	0.00	2.00	0.00	2.00
..............................CTCAATTTGTAAATGTGAG........................................................................	19	1	4.00	2.00	0.00	0.00	2.00
..........................TAATCTCAACTTGTAAATGTGAG........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
..........................TGATCTCAATTTGTAAATGTGAG........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
..........................TAATCTCAATTTGTAAATATGAG........................................................................	23	1	4.00	0.00	1.00	0.00	3.00
..........................TAATCTCAATTTGTAAATGTGCG........................................................................	23	1	4.00	0.00	2.00	0.00	2.00
..........................TAATCTCAATTTGTxAATGTGAG........................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................TAATCGCAATTTGTAAATGTGAG........................................................................	23	1	4.00	1.00	3.00	0.00	0.00
..........................TAATCTCCATTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
..........................TAATCTCAATTTGTAGATGTGAG........................................................................	23	1	3.00	1.00	0.00	0.00	2.00
..........................TAATCTCAATTTGTAAATGAG..........................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.........................................................................CACTTTGAAATTGGAGATTGCT..........................	22	1	3.00	0.00	0.00	0.00	3.00
.........................................................................CACTTTGCAATTGGAGCTTGCT..........................	22	1	3.00	1.00	1.00	0.00	1.00
............................ATCTCAATTTGTAAATGTGA.........................................................................	20	1	3.00	0.00	1.00	0.00	2.00
.........................................................................CACTTGGCAATTGGAGATTGCT..........................	22	1	3.00	0.00	3.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGAGAG........................................................................	23	1	3.00	0.00	2.00	0.00	1.00
..........................TCATCTCAATTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.........................................................................CACTTTGCAATTGGAGATTGCTT.........................	23	1	3.00	0.00	1.00	0.00	2.00
..........................TAATCTCAAxTTGTAAATGTGAG........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................TAATCTCAGTTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...............................TCAATTTGTAAATGTGAGCGGTT-..................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.........................................................................CACTTTGCAATTAGAGATTGCT..........................	22	1	3.00	0.00	2.00	0.00	1.00
..........................TAATCTCAATTTTTAAATGTGA.........................................................................	22	1	3.00	1.00	1.00	0.00	1.00
..........................TAATCACAATTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
..........................TAATCTCAATTTGTAAATGTGAGTT......................................................................	25	1	3.00	0.00	0.00	0.00	3.00
..........................TAATCTCAATTTGTCAATGTGAG........................................................................	23	1	3.00	1.00	0.00	0.00	2.00
.........................................................................CACTTTGCAATTGGAGTTTGCT..........................	22	1	3.00	0.00	0.00	0.00	3.00
..........................TAATCTAAATTTGTAAATGTGA.........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................TAATxTCAATTTGTAAATGTGAG........................................................................	22	1	3.00	0.00	0.00	0.00	3.00

droEug1

ATACGAAATGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT

Size

Hit Count

Total Norm

droBia1

------------TCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCC-TTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCCTATGCCACA--TT

Size

Hit Count

Total Norm

droTak1

----CAATTATATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCAATC-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT

Size

Hit Count

Total Norm

droEle1

ATACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTCGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT

Size

Hit Count

Total Norm

droRho1

ATACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT

Size

Hit Count

Total Norm

droFic1

---CGAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTA-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT

Size

Hit Count

Total Norm

droKik1

TT-----TTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTCGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATTTGCCACA--T-

Size

Hit Count

Total Norm

droAna3

-----------ATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCCATTTGACGGACTCACTTTGCAACTGGAGATTGCTCGAGACTGCGGCATATGCCACAAAGT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................TAATCTCAATTTGTAAATGTGAG........................................................................	23	1	2432.00	870.00	1035.00	464.00	63.00
.........................................................................CACTTTGCAACTGGAGATTGCT..........................	22	1	2176.00	1673.00	375.00	100.00	28.00
..........................TAATCTCAATTTGTAAATGTGA.........................................................................	22	1	273.00	72.00	157.00	40.00	4.00
..........................TAATCTCAATTTGTAAATGTGAGT.......................................................................	24	1	241.00	128.00	73.00	39.00	1.00
.........................................................................CACTTTGCAACTGGAGATTGC...........................	21	1	128.00	94.00	21.00	10.00	3.00
.........................................................................CACTTTGCAACTGGAGATTG............................	20	1	81.00	68.00	9.00	4.00	0.00
..........................TAATCTCAATTTGTAAATGTGAT........................................................................	23	1	38.00	6.00	23.00	6.00	3.00
..........................TAATCTCAATTTGTAAATGT...........................................................................	20	1	36.00	28.00	4.00	3.00	1.00
.........................................................................CACTTTGCAACTGGAGATTGAT..........................	22	1	33.00	29.00	2.00	1.00	1.00
..........................TAATCTCAATTTGTAAATGTTAG........................................................................	23	1	33.00	10.00	8.00	9.00	6.00
..........................TAATCTCAATTTGTAAATGTGT.........................................................................	22	1	28.00	20.00	2.00	6.00	0.00
..........................................................................ACTTTGCAACTGGAGATTGCT..........................	21	1	25.00	16.00	7.00	2.00	0.00
.........................................................................CACTTTGCAACTGGAGATTGCTT.........................	23	1	24.00	23.00	1.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTG..........................................................................	21	1	19.00	6.00	11.00	2.00	0.00
.........................................................................CACTTTGCAACTGGAGATT.............................	19	1	16.00	16.00	0.00	0.00	0.00
.........................................................................CACTTTGCAACTAGAGATTGCT..........................	22	1	14.00	14.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGATTGCT..........................	22	1	13.00	6.00	5.00	0.00	2.00
.........................................................................CACTTTGCAACTGGAGATTTCT..........................	22	1	13.00	8.00	4.00	0.00	1.00
.........................................................................CACTTTGCAACTCGAGATTGCT..........................	22	1	12.00	10.00	1.00	1.00	0.00
.........................................................................CACTTTGCAACTGGATATTGCT..........................	22	1	11.00	10.00	0.00	0.00	1.00
.........................................................................CACTTTGCAACAGGAGATTGCT..........................	22	1	11.00	11.00	0.00	0.00	0.00
.........................................................................AACTTTGCAACTGGAGATTGCT..........................	22	1	10.00	7.00	2.00	1.00	0.00
..........................TAATCTAAATTTGTAAATGTGAG........................................................................	23	1	9.00	2.00	7.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGCG........................................................................	23	1	9.00	1.00	0.00	7.00	1.00
.........................................................................CACTTTGCAACTGGAGATTGGT..........................	22	1	9.00	9.00	0.00	0.00	0.00
.........................................................................CACTTTGCAACCGGAGATTGCT..........................	22	1	9.00	7.00	2.00	0.00	0.00
.........................................................................CACCTTGCAACTGGAGATTGCT..........................	22	1	8.00	8.00	0.00	0.00	0.00
.........................................................................CACTTTGCAACTTGAGATTGCT..........................	22	1	8.00	6.00	2.00	0.00	0.00
.........................................................................CACTTTGCAAATGGAGATTGCT..........................	22	1	8.00	6.00	0.00	2.00	0.00
..........................TAATCTCAATTTGTAAATCTGAG........................................................................	23	1	8.00	2.00	1.00	5.00	0.00
..........................TAATCTCAATTTGTAAATGTAAG........................................................................	23	1	8.00	5.00	3.00	0.00	0.00
..........................TAATCTCAATTCGTAAATGTGAG........................................................................	23	1	7.00	4.00	2.00	0.00	1.00
..........................TAATCTCAATTTGTAAATGTGAGA.......................................................................	24	1	7.00	2.00	4.00	1.00	0.00
.........................................................................CACTTTGAAACTGGAGATTGCT..........................	22	1	7.00	2.00	4.00	1.00	0.00
..........................TAATCGCAATTTGTAAATGTGAG........................................................................	23	1	7.00	0.00	0.00	7.00	0.00
..........................TAATCTCAATTTGTAAATGTGAGC.......................................................................	24	1	6.00	1.00	5.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAGTT......................................................................	25	1	6.00	2.00	2.00	2.00	0.00
.........................................................................CACTTTGCAACTGGACATTGCT..........................	22	1	6.00	6.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTCAG........................................................................	23	1	6.00	4.00	1.00	1.00	0.00
..........................TAATCTCxATTTGTAAATGTGAG........................................................................	22	1	5.00	2.00	3.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGGG........................................................................	23	1	5.00	1.00	3.00	1.00	0.00
.........................................................................CACTTTGCAACTGGAGATTGTT..........................	22	1	5.00	4.00	0.00	1.00	0.00
.........................................................................CACTTTGCAACTGTAGATTGCT..........................	22	1	5.00	4.00	0.00	0.00	1.00
..........................TAATCTCAATCTGTAAATGTGAG........................................................................	23	1	5.00	1.00	2.00	2.00	0.00
..........................TAATCTCGATTTGTAAATGTGAG........................................................................	23	1	5.00	0.00	3.00	2.00	0.00
...........................AATCTCAATTTGTAAATGTGAG........................................................................	22	1	5.00	1.00	1.00	2.00	1.00
..........................TAGTCTCAATTTGTAAATGTGAG........................................................................	23	1	5.00	1.00	3.00	1.00	0.00
..........................TAATATCAATTTGTAAATGTGAG........................................................................	23	1	5.00	0.00	4.00	1.00	0.00
..........................TAATTTCAATTTGTAAATGTGAG........................................................................	23	1	5.00	1.00	2.00	1.00	1.00
.........................................................................CACTTTGCAACGGGAGATTGCT..........................	22	1	5.00	5.00	0.00	0.00	0.00
..........................TAATCTCAGTTTGTAAATGTGAG........................................................................	23	1	5.00	0.00	1.00	4.00	0.00
..........................TAATCTCAATTTGTATATGTGAG........................................................................	23	1	5.00	2.00	1.00	1.00	1.00
..........................TAATCTCAATTTGTAAATGTGTG........................................................................	23	1	5.00	0.00	0.00	5.00	0.00
.........................................................................CACTTTTCAACTGGAGATTGCT..........................	22	1	5.00	5.00	0.00	0.00	0.00
..........................TAATCTCAATTAGTAAATGTGAG........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATATGAG........................................................................	23	1	4.00	1.00	2.00	1.00	0.00
.........................................................................CGCTTTGCAACTGGAGATTGCT..........................	22	1	4.00	4.00	0.00	0.00	0.00
..........................TAATCTCAATTTGCAAATGTGAG........................................................................	23	1	4.00	1.00	1.00	2.00	0.00
..........................TAATCTCAATTTGTACATGTGAG........................................................................	23	1	4.00	1.00	0.00	3.00	0.00
..........................TAATCTCAATTTGTAAATGTGAA........................................................................	23	1	4.00	1.00	2.00	1.00	0.00
..........................TAATCTCAATTTGTAAATTTGAT........................................................................	23	1	4.00	0.00	0.00	1.00	3.00
.........................................................................CACTTTGTAACTGGAGATTGCT..........................	22	1	4.00	2.00	1.00	0.00	1.00
..........................TAATCTCATTTTGTAAATGTGAG........................................................................	23	1	4.00	2.00	0.00	2.00	0.00
..........................TAATCTCAATTTCTAAATGTGA.........................................................................	22	1	4.00	3.00	0.00	1.00	0.00
..........................TAATCTCAATTGGTAAATGTGAG........................................................................	23	1	4.00	2.00	0.00	2.00	0.00
.........................................................................CACTTTGCAACTGCAGATTGCT..........................	22	1	3.00	2.00	0.00	1.00	0.00
..........................TAATCTCAATTTGTAAGTGTGAG........................................................................	23	1	3.00	1.00	1.00	0.00	1.00
..........................TAATCTCAATTTATAAATGTGAG........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.........................................................................CACTTTCCAACTGGAGATTGCT..........................	22	1	3.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATTTTTAAATGTGAG........................................................................	23	1	3.00	1.00	0.00	1.00	1.00
..........................TAATCTTAATTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	1.00	2.00	0.00
.........................................................................CATTTTGCAACTGGAGATTGCT..........................	22	1	3.00	3.00	0.00	0.00	0.00
..........................TAATATCAATTTGTAAATGTGA.........................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..........................TAATCCCAATTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	2.00	1.00	0.00
.........................................................................CACTTTGCAAGTGGAGATTGCT..........................	22	1	3.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAACGTGAG........................................................................	23	1	3.00	0.00	0.00	2.00	1.00
.........................................................................CACTTTGCAACTGTAGATTTCT..........................	22	1	3.00	1.00	2.00	0.00	0.00
..........................TAATCTCAATTTCTAAATGTGAG........................................................................	23	1	3.00	1.00	1.00	0.00	1.00
..........................................................................ACTTTGCAACTGGAGATTG............................	19	1	3.00	1.00	2.00	0.00	0.00
..........................GAATCTCAATTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	1.00	2.00	0.00
..........................TAATCTCAATTTGTGAATGTGAG........................................................................	23	1	3.00	1.00	0.00	2.00	0.00
.........................................................................CACTTTGCAACTGGAGACTGCT..........................	22	1	3.00	1.00	1.00	0.00	1.00
.........................................................................CCCTTTGCAACTGGAGATTGCT..........................	22	1	3.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAGATGTGAG........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.........................................................................CACTTTGCAGCTGGAGATTGCT..........................	22	1	3.00	2.00	1.00	0.00	0.00
.........................ATAATCTCAATTTGTAAATGTGAG........................................................................	24	1	3.00	2.00	1.00	0.00	0.00
..........................................................................ACTTTGCAACTGGAGATTGCTT.........................	22	1	3.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATATGTAAATGTGAG........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..........................TAAGCTCAATTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	0.00	3.00	0.00
..........................CAATCTCAATTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	2.00	1.00	0.00
..........................................................................ACTTTGCAACTGGAGATTGC...........................	20	1	3.00	0.00	2.00	0.00	1.00
.........................................................................CACTTTGCAACTGGAGCTTGCT..........................	22	1	3.00	2.00	0.00	1.00	0.00

droBip1

------------TCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCCATTTGAGGGACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCCTATGCCACAAATT

Size

Hit Count

Total Norm

dp4

------ACTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGGCATTTGACACACTCACTTTGCAACTGGAGATTGCTCGAAACTGCGGCACATGCCACA--TT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........................TAATCTCAATTTGTAAATGTGAG........................................................................	23	2	1314.00	470.50	373.50	466.50	3.50
.........................................................................CACTTTGCAACTGGAGATTGCT..........................	22	3	521.33	339.00	130.33	51.00	1.00
..........................TAATCTCAATTTGTAAATGTGA.........................................................................	22	2	112.50	48.00	21.00	33.50	10.00
..........................TAATCTCAATTTGTAAATGTGAGT.......................................................................	24	2	68.50	50.50	2.50	15.00	0.50
.........................................................................CACTTTGCAACTGGAGATTGC...........................	21	3	34.33	22.67	6.00	5.00	0.67
........................................................................TCACTTTGCAACTGGAGATTGCT..........................	23	3	18.67	11.33	5.33	1.33	0.67
........................................................................TCACTTTGCAACTGGAGATTG............................	21	3	12.00	10.00	0.33	1.00	0.67
..........................................................................ACTTTGCAACTGGAGATTGCT..........................	21	3	9.67	6.67	1.33	1.67	0.00
.........................................................................CACTTTGCAACTGGAGATTG............................	20	3	7.67	7.00	0.33	0.33	0.00
.........................................................................CACTTTGCAATTGGAGATTGCT..........................	22	3	6.33	4.33	2.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTTAG........................................................................	23	2	9.50	0.00	5.00	4.50	0.00
..........................TAATCTCAATTTGTAAATGT...........................................................................	20	2	8.50	5.00	0.50	3.00	0.00
........................................................................TCACTTTGCAACTGGAGATTGC...........................	22	3	4.67	2.00	2.00	0.67	0.00
..........................TAATCTCAATTTGTAAATGTGT.........................................................................	22	2	7.00	6.00	0.00	1.00	0.00
..........................TAATATCAATTTGTAAATGTGAG........................................................................	23	2	5.50	0.50	4.50	0.50	0.00
..........................TAATCTCAATTTGTAAATGTGAT........................................................................	23	2	4.50	0.00	1.50	3.00	0.00
.........................................................................CACTTTGCAACTGGAGCTTGCT..........................	22	3	2.67	0.67	0.67	1.33	0.00
..........................TAATCTCAATTTGTAAATGTGAGA.......................................................................	24	2	3.50	1.00	1.00	1.00	0.50
.........................................................................TACTTTGCAACTGGAGATTGCT..........................	22	3	2.33	0.33	1.67	0.33	0.00
..........................TAATCTCAATTTGTAAATGTG..........................................................................	21	2	3.50	1.50	0.00	2.00	0.00
.........................................................................CACTTTGCAACTGGAGATTGCTT.........................	23	3	2.33	2.00	0.00	0.33	0.00
..........................TAATCGCAATTTGTAAATGTGAG........................................................................	23	2	3.50	0.00	2.00	1.50	0.00
........................................................................TCACTTTGCAACTGGAGATTGT...........................	22	3	2.33	1.00	0.67	0.67	0.00
..........................TAATCTCAATTTGTAAATGTGCG........................................................................	23	2	3.00	0.00	2.00	1.00	0.00
..........................TAATCTCAATTTGTGAATGTGAG........................................................................	23	2	3.00	0.50	1.00	1.50	0.00
..........................TAATCTTAATTTGTAAATGTGAG........................................................................	23	2	2.50	0.50	1.50	0.50	0.00
..........................TAATCTCAATTTGTAAATGTCAG........................................................................	23	2	2.50	0.50	1.50	0.50	0.00
..........................TAATCTCAATTTGTAAATGTGAA........................................................................	23	2	2.50	1.00	0.00	1.50	0.00
..........................TAATCTCAATTTGTAAATGTGGG........................................................................	23	2	2.50	0.50	0.50	1.50	0.00
..........................TAATCTCAATTTGTAAATGTGAC........................................................................	23	2	2.00	0.50	0.50	0.00	1.00
..........................TAATCTAAATTTGTAAATGTGAG........................................................................	23	2	2.00	0.00	0.50	1.50	0.00
.........................................................................CACTCTGCAACTGGAGATTGCT..........................	22	3	1.33	0.67	0.33	0.33	0.00
.........................................................................CACTTTGCAACTTGAGATTGCT..........................	22	3	1.33	0.67	0.67	0.00	0.00
..........................TGATCTCAATTTGTAAATGTGAG........................................................................	23	3	1.33	0.00	0.00	1.33	0.00
.........................................................................CACTTTGCAACTGGGGATTGCT..........................	22	3	1.33	1.00	0.00	0.33	0.00
..........................TAATCTCGATTTGTAAATGTGAG........................................................................	23	2	2.00	0.50	1.00	0.50	0.00
..........................TAATCTCAATTTTTAAATGTGAG........................................................................	23	2	2.00	1.00	1.00	0.00	0.00
..........................TAATCTCAATTTGTAGATGTGAG........................................................................	23	2	2.00	0.00	1.00	1.00	0.00
..........................TAATCTCAATTCGTAAATGTGAG........................................................................	23	2	2.00	0.50	0.50	1.00	0.00
.........................................................................CACTTTGCAACTGGAGTTTGCT..........................	22	3	1.33	0.00	1.00	0.33	0.00
..........................TAAGCTCAATTTGTAAATGTGAG........................................................................	23	2	2.00	0.00	1.00	1.00	0.00
..........................TAATCTCAATTTGTAAATTTGAG........................................................................	23	2	2.00	0.00	1.00	1.00	0.00
..........................TAATCTCAATTTGTAAATATGAG........................................................................	23	2	2.00	0.50	0.50	1.00	0.00
..........................TAATCTCAATTTGTAAACGTGAG........................................................................	23	2	1.50	0.00	1.00	0.50	0.00
.........................................................................CACTTTGCAACTGGAGAGTGCT..........................	22	3	1.00	0.00	1.00	0.00	0.00
.........................................................................CACGTTGCAACTGGAGATTGCT..........................	22	3	1.00	0.00	1.00	0.00	0.00
..............................CTCAATTTGTAAATGTGAG........................................................................	19	3	1.00	0.00	1.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAGC.......................................................................	24	2	1.50	0.00	0.50	1.00	0.00
..........................................................................ACTTTGCAACTGGAGATTGCTC.........................	22	3	1.00	0.00	0.00	0.00	1.00
..........................TAATCTCAATTTGTACATGTGAG........................................................................	23	2	1.50	0.00	1.50	0.00	0.00
..............................CTCAATTTGTAAATGTGA.........................................................................	18	3	1.00	0.67	0.00	0.33	0.00
..........................TAATCTCAGTTTGTAAATGTGAG........................................................................	23	2	1.50	0.50	0.50	0.50	0.00

droPer1

-------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

-------TTGTATCTGTAACATTGATTAATCTCAATTTGTAAATGTGAGCGATTTAAATCCATTCGATGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................TAATCTCAATTTGTAAATGTGAG........................................................................	23	1	9772.00	505.00	8020.00	1211.00	36.00
.........................................................................CACTTTGCAATTGGAGATTGCT..........................	22	1	4040.00	1031.00	2574.00	404.00	31.00
........................................................................TCACTTTGCAATTGGAGATTGCT..........................	23	1	1186.00	297.00	755.00	105.00	29.00
..........................TAATCTCAATTTGTAAATGTGA.........................................................................	22	1	464.00	24.00	255.00	113.00	72.00
........................................................................TCACTTTGCAATTGGAGATTG............................	21	1	321.00	89.00	49.00	38.00	145.00
..........................TAATCTCAATTTGTAAATGTGAGC.......................................................................	24	1	320.00	8.00	275.00	33.00	4.00
..........................TAATCTCAATTTGTAAATGTGAGT.......................................................................	24	1	131.00	31.00	46.00	48.00	6.00
........................................................................TCACTTTGCAATTGGAGATTGC...........................	22	1	119.00	33.00	57.00	23.00	6.00
.........................................................................CACTTTGCAATTGGAGATTGC...........................	21	1	84.00	11.00	63.00	6.00	4.00
...................................................................TGCACTCACTTTGCAATTGGAGA...............................	23	1	61.00	4.00	56.00	1.00	0.00
..........................................................................ACTTTGCAATTGGAGATTGCT..........................	21	1	30.00	19.00	9.00	2.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGT...........................	22	1	28.00	10.00	10.00	1.00	7.00
........................................................................TCACTTTGCAATTGGGGATTGCT..........................	23	1	28.00	7.00	6.00	14.00	1.00
..........................TAATCTCAATTTGTAAATGTGAGA.......................................................................	24	1	26.00	1.00	14.00	7.00	4.00
...................................................................TGCACTCACTTTGCAATTGGAG................................	22	1	24.00	2.00	18.00	3.00	1.00
..........................TAATCTCAATTTGTAAATTTGAG........................................................................	23	1	20.00	1.00	17.00	2.00	0.00
..........................TAATCTCAATTTGTAAATATGAG........................................................................	23	1	19.00	0.00	15.00	4.00	0.00
..........................TAATCTCAATTTGTAAATGTTAG........................................................................	23	1	17.00	0.00	15.00	2.00	0.00
..........................TAATCTCAATTTGTAAATGTG..........................................................................	21	1	17.00	1.00	5.00	4.00	7.00
..........................CAATCTCAATTTGTAAATGTGAG........................................................................	23	1	16.00	0.00	9.00	7.00	0.00
.........................................................................CACTTTGCAATTGGGGATTGCT..........................	22	1	15.00	5.00	4.00	6.00	0.00
..........................TACTCTCAATTTGTAAATGTGAG........................................................................	23	1	14.00	1.00	11.00	2.00	0.00
........................................................................TCACTTTGCAATTGGGGATTG............................	21	1	14.00	0.00	0.00	8.00	6.00
..........................TAATCTCAATTTGTAAATGTGGG........................................................................	23	1	14.00	2.00	11.00	1.00	0.00
..........................TAATCTCAATTTGTAAATGTCAG........................................................................	23	1	14.00	0.00	13.00	1.00	0.00
...........................AATCTCAATTTGTAAATGTGAG........................................................................	22	1	14.00	1.00	11.00	2.00	0.00
..........................TAATCTCAATTTGTAAGTGTGAG........................................................................	23	1	12.00	1.00	9.00	2.00	0.00
..........................TAACCTCAATTTGTAAATGTGAG........................................................................	23	1	12.00	0.00	8.00	4.00	0.00
..........................TAATCCCAATTTGTAAATGTGAG........................................................................	23	1	12.00	1.00	6.00	5.00	0.00
.........................................................................CACTTTGCAATTGGAGATTG............................	20	1	12.00	8.00	3.00	1.00	0.00
.......TTGTATCTGTAACATTGAT...............................................................................................	19	1	12.00	1.00	10.00	0.00	1.00
..........................TAATCTCAATTTGTAAATGT...........................................................................	20	1	12.00	10.00	0.00	2.00	0.00
.........................................................................CACTTTGCAATTGTAGATTGCT..........................	22	1	12.00	0.00	10.00	2.00	0.00
..........................TAATCTCAATTTGTAAATGTGG.........................................................................	22	1	12.00	0.00	1.00	0.00	11.00
.........................CTAATCTCAATTTGTAAATGTGAG........................................................................	24	1	11.00	0.00	9.00	2.00	0.00
..........................TAATCTCAATTTTTAAATGTGAG........................................................................	23	1	11.00	0.00	11.00	0.00	0.00
.........................................................................CACTTTGCAACTGGAGATTGCT..........................	22	1	11.00	7.00	2.00	1.00	1.00
..........................TAATCTCAATTTGTAAATGCGAG........................................................................	23	1	11.00	3.00	8.00	0.00	0.00
..........................TAATCTCAATTTGCAAATGTGAG........................................................................	23	1	10.00	0.00	7.00	3.00	0.00
........................................................................TCACTTTGCAATTGGAGATT.............................	20	1	10.00	5.00	2.00	2.00	1.00
..........................TAATCTCAATTTGTAAACGTGAG........................................................................	23	1	9.00	0.00	8.00	1.00	0.00
..........................TAATCTAAATTTGTAAATGTGAG........................................................................	23	1	9.00	1.00	8.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAT........................................................................	23	1	9.00	0.00	9.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTAAG........................................................................	23	1	9.00	0.00	6.00	3.00	0.00
.........................................................................CACTTTGCAATTTGAGATTGCT..........................	22	1	9.00	0.00	9.00	0.00	0.00
..........................TAATCTCAATTTGTAAATG............................................................................	19	1	9.00	0.00	0.00	0.00	9.00
.........................................................................CACTTTGCAATTGGATATTGCT..........................	22	1	9.00	0.00	8.00	1.00	0.00
.........................................................................CACTTTGCAATTGGAGATTTCT..........................	22	1	8.00	1.00	6.00	1.00	0.00
..........................TAATCTCAATTTGTAGATGTGAG........................................................................	23	1	8.00	0.00	7.00	1.00	0.00
..........................TAATATCAATTTGTAAATGTGAG........................................................................	23	1	8.00	0.00	4.00	4.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGTT..........................	23	1	8.00	2.00	0.00	2.00	4.00
..........................TAATCTCAATTTGTAAATGTGAC........................................................................	23	1	8.00	1.00	6.00	0.00	1.00
........................................................................TCACTTTGCAATTGGAGATTGA...........................	22	1	8.00	6.00	2.00	0.00	0.00
..........................TAGTCTCAATTTGTAAATGTGAG........................................................................	23	1	8.00	0.00	7.00	1.00	0.00
..........................TAATCTCAATTTGTAAATGTGAA........................................................................	23	1	8.00	2.00	3.00	3.00	0.00
..........................TAATCTCAATTTCTAAATGTGAG........................................................................	23	1	7.00	2.00	3.00	2.00	0.00
.........................................................................CACTTTTCAATTGGAGATTGCT..........................	22	1	7.00	0.00	4.00	1.00	2.00
..........................TAATCTCACTTTGTAAATGTGAG........................................................................	23	1	6.00	0.00	4.00	2.00	0.00
..........................TAATCTCxATTTGTAAATGTGAG........................................................................	22	1	6.00	1.00	5.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGATTGCC..........................	22	1	6.00	2.00	0.00	0.00	4.00
..........................TAATTTCAATTTGTAAATGTGAG........................................................................	23	1	6.00	0.00	4.00	2.00	0.00
..........................TAATCTCAATCTGTAAATGTGAG........................................................................	23	1	6.00	1.00	5.00	0.00	0.00
..........................TAATCTCAATTTGTACATGTGAG........................................................................	23	1	6.00	0.00	6.00	0.00	0.00
.......................................................................CTCACTTTGCAATTGGAGATTGCT..........................	24	1	6.00	2.00	4.00	0.00	0.00
...............................TCAATTTGTAAATGTGAG........................................................................	18	1	5.00	0.00	3.00	2.00	0.00
.........................................................................CACTTTGCAATTGGAGACTGCT..........................	22	1	5.00	1.00	4.00	0.00	0.00
.........................................................................CACTTTGCGATTGGAGATTGCT..........................	22	1	5.00	3.00	2.00	0.00	0.00
.........................................................................TACTTTGCAATTGGAGATTGCT..........................	22	1	5.00	0.00	3.00	2.00	0.00
..........................TAATCTCAACTTGTAAATGTGAG........................................................................	23	1	5.00	0.00	3.00	2.00	0.00
...................................................................TGCACTCACTTTGCAATTGGAGATTGCT..........................	28	1	5.00	5.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGCGATTGCT..........................	22	1	5.00	3.00	2.00	0.00	0.00
.........................................................................CACTTTGAAATTGGAGATTGCT..........................	22	1	5.00	0.00	3.00	2.00	0.00
...................................................................TGCACTCACTTTGCAATTGGAGT...............................	23	1	5.00	1.00	4.00	0.00	0.00
..........................................................................ACTTTGCAATTGGAGATTGCTT.........................	22	1	5.00	3.00	0.00	2.00	0.00
..........................TAATCTCAATTTGTAAATGTGAGCT......................................................................	25	1	5.00	3.00	2.00	0.00	0.00
..........................TGATCTCAATTTGTAAATGTGAG........................................................................	23	1	5.00	1.00	4.00	0.00	0.00
........................................................................TCACTTCGCAATTGGAGATTGCT..........................	23	1	5.00	2.00	3.00	0.00	0.00
.......................................................................CTCACTTTGCAATTGGAGATTGC...........................	23	1	5.00	1.00	4.00	0.00	0.00
..........................TAATCTCGATTTGTAAATGTGAG........................................................................	23	1	5.00	0.00	3.00	2.00	0.00
..........................TAATCTCAATTTGTCAATGTGAG........................................................................	23	1	5.00	0.00	3.00	2.00	0.00
.........................................................................CACCTTGCAATTGGAGATTGCT..........................	22	1	5.00	2.00	3.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGCG........................................................................	23	1	5.00	1.00	2.00	2.00	0.00
.......................................................................CTCACTTTGCAATTGGAGATTG............................	22	1	5.00	2.00	3.00	0.00	0.00
........................................................................TCACTTTCCAATTGGAGATTGCT..........................	23	1	4.00	1.00	1.00	1.00	1.00
..........................TAATCTCAATTTATAAATGTGAG........................................................................	23	1	4.00	0.00	3.00	0.00	1.00
..........................TAATCTCAATTCGTAAATGTGAG........................................................................	23	1	4.00	0.00	3.00	1.00	0.00
.........................................................................CACTTTGCAATCGGAGATTGCT..........................	22	1	4.00	2.00	1.00	1.00	0.00
.........................................................................AACTTTGCAATTGGAGATTGCT..........................	22	1	4.00	0.00	3.00	1.00	0.00
.........................................................................CGCTTTGCAATTGGAGATTGCT..........................	22	1	4.00	0.00	3.00	1.00	0.00
.........................................................................CACTTTGCAATTGGAGATTCCT..........................	22	1	4.00	0.00	2.00	2.00	0.00
.........................................................................CACTTTGCAGTTGGAGATTGCT..........................	22	1	4.00	1.00	2.00	1.00	0.00
..........................TAATCTCAATTTGTGAATGTGAG........................................................................	23	1	4.00	0.00	3.00	1.00	0.00
..........................TAATCTCAATTTGTAAATGTGTG........................................................................	23	1	4.00	0.00	2.00	2.00	0.00
.........................................................................CACTCTGCAATTGGAGATTGCT..........................	22	1	4.00	2.00	2.00	0.00	0.00
........................................................................TCACTTTGCAATTGGGGATTGC...........................	22	1	4.00	0.00	1.00	2.00	1.00
............................ATCTCAATTTGTAAATGTGA.........................................................................	20	1	4.00	1.00	2.00	0.00	1.00
..........................TCATCTCAATTTGTAAATGTGAG........................................................................	23	1	4.00	0.00	2.00	2.00	0.00
.........................................................................CACTTTGCAATTGGAGATTGAT..........................	22	1	4.00	0.00	3.00	1.00	0.00
.........................................................................CACTTxxCAATTGGAGATTGCT..........................	20	1	4.00	1.00	2.00	1.00	0.00
.........................................................................CACTTTGCAATTGGAGATTGCTT.........................	23	1	4.00	1.00	3.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGATCGCT..........................	22	1	4.00	2.00	2.00	0.00	0.00

droVir3

TTGTTAAACTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTAAAGTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCTTATGCCACA--TA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................TAATCTCAATTTGTAAATGTGAG........................................................................	23	1	2625.00	1561.00	945.00	68.00	34.00	17.00
.........................................................................CACTTTGCAATTGGAGATTGCT..........................	22	1	1357.00	1053.00	87.00	198.00	16.00	3.00
........................................................................TCACTTTGCAATTGGAGATTGCT..........................	23	1	294.00	248.00	15.00	17.00	8.00	6.00
..........................TAATCTCAATTTGTAAATGTGA.........................................................................	22	1	275.00	116.00	82.00	2.00	49.00	26.00
..........................TAATCTCAATTTGTAAATGTGAGT.......................................................................	24	1	97.00	70.00	21.00	1.00	3.00	2.00
........................................................................TCACTTTGCAATTGGAGATTG............................	21	1	87.00	52.00	2.00	0.00	23.00	10.00
.........................................................................CACTTTGCAATTGGAGATTGC...........................	21	1	43.00	34.00	3.00	5.00	0.00	1.00
........................................................................TCACTTTGCAATTGGAGATTGC...........................	22	1	22.00	19.00	1.00	0.00	2.00	0.00
..........................TAATCTCAATTTGTAAATGTGG.........................................................................	22	1	19.00	0.00	0.00	0.00	10.00	9.00
..........................TAATCTCAATTTGTAAATGTGAGA.......................................................................	24	1	16.00	3.00	6.00	0.00	4.00	3.00
..........................TAATCTCAATTTGTAAATGTG..........................................................................	21	1	15.00	7.00	3.00	0.00	3.00	2.00
..........................TAATCTCAATTTGTAAATGT...........................................................................	20	1	14.00	6.00	3.00	1.00	2.00	2.00
..........................TAATCTCAATTTGTAAATGTTAG........................................................................	23	1	14.00	1.00	5.00	8.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAGC.......................................................................	24	1	13.00	11.00	2.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGT.........................................................................	22	1	13.00	7.00	6.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGCGAG........................................................................	23	1	11.00	5.00	6.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATTTGAG........................................................................	23	1	10.00	5.00	3.00	2.00	0.00	0.00
..........................................................................ACTTTGCAATTGGAGATTGCT..........................	21	1	9.00	8.00	1.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAC........................................................................	23	1	9.00	2.00	3.00	1.00	1.00	2.00
..........................TAATCTCAATTTGTAAATGTGAA........................................................................	23	1	8.00	6.00	2.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAT........................................................................	23	1	7.00	1.00	5.00	1.00	0.00	0.00
...........................AATCTCAATTTGTAAATGTGAG........................................................................	22	1	7.00	3.00	4.00	0.00	0.00	0.00
..........................TAATCTCAATTTGAAAATGTGAG........................................................................	23	1	6.00	4.00	2.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTCAG........................................................................	23	1	6.00	2.00	4.00	0.00	0.00	0.00
..........................TAATCTCAATTCGTAAATGTGAG........................................................................	23	1	5.00	2.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATG............................................................................	19	1	5.00	0.00	0.00	0.00	3.00	2.00
.................................................CGATTTTAAAGTATTTGACGCACT................................................	24	1	5.00	2.00	0.00	1.00	1.00	1.00
..........................TAATCCCAATTTGTAAATGTGAG........................................................................	23	1	5.00	1.00	4.00	0.00	0.00	0.00
.............................TCTCAATTTGTAAATGTGAGCG......................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
.......................................................................CTCACTTTGCAATTGGAGATTGCT..........................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATATGAG........................................................................	23	1	4.00	1.00	3.00	0.00	0.00	0.00
.........................................................................CACCTTGCAATTGGAGATTGCT..........................	22	1	4.00	3.00	0.00	1.00	0.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGT...........................	22	1	4.00	2.00	0.00	0.00	1.00	1.00
.........................................................................CACTTTGCAATTGGAGATTGCC..........................	22	1	4.00	1.00	0.00	1.00	2.00	0.00
..........................TAATCGCAATTTGTAAATGTGAG........................................................................	23	1	4.00	0.00	4.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGATTG............................	20	1	4.00	3.00	1.00	0.00	0.00	0.00
..........................TAATCTCAATTTGCAAATGTTAG........................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAGATGTGAG........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATTTGAGATTGCT..........................	22	1	3.00	1.00	0.00	2.00	0.00	0.00
..........................TAACCTCAATTTGTAAATGTGAG........................................................................	23	1	3.00	1.00	2.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATCGGAGATTGCT..........................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................TAATCTCATTTTGTAAATGTGAG........................................................................	23	1	3.00	1.00	2.00	0.00	0.00	0.00
.........................................................................CACTTGGCAATTGGAGATTGCT..........................	22	1	3.00	0.00	1.00	2.00	0.00	0.00
..........................TAATCTCAATTTGGAAATGTGAG........................................................................	23	1	3.00	1.00	2.00	0.00	0.00	0.00
..........................TAATCTCACTTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	2.00	0.00	0.00	1.00
..........................TAATCTCAATTTGTAAATGTGGGT.......................................................................	24	1	3.00	1.00	2.00	0.00	0.00	0.00
.........................................................................CACTTTGCAACTGGAGATTGCT..........................	22	1	3.00	1.00	0.00	1.00	0.00	1.00
.........................................................................CACTTTGCAATTGGAGATTGCTT.........................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................CAATCTCAATTTGTAAATGTGAG........................................................................	23	1	3.00	1.00	2.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTGAATGTGAG........................................................................	23	1	3.00	2.00	1.00	0.00	0.00	0.00
..........................TAATCTCAATTTCTAAATGTGAG........................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATTTTTAAATGTGAG........................................................................	23	1	3.00	1.00	1.00	0.00	1.00	0.00
.............................TCTCAATTTGTAAATGTGAGC.......................................................................	21	1	3.00	0.00	2.00	0.00	1.00	0.00
.........................................................................CACTTTTCAATTGGAGATTGCT..........................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAGTT......................................................................	25	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGCC..........................	23	1	3.00	1.00	0.00	0.00	1.00	1.00
..........................TAATCTCAATTTGTAAATGGGAG........................................................................	23	1	3.00	2.00	1.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGATTTCT..........................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
..........................TAATCTCAATTTGCAAATGTGAG........................................................................	23	1	3.00	1.00	2.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGATTGCA..........................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.........................CTAATCTCAATTTGTAAATGTGAG........................................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................TAATCTTAATTTGTAAATGTGAG........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTACATGTGAG........................................................................	23	1	3.00	2.00	1.00	0.00	0.00	0.00

droMoj3

GTCCAACTCTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTTAACTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCAGCATATGCCACA--TT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................TAATCTCAATTTGTAAATGTGAG........................................................................	23	1	4487.00	3116.00	617.00	262.00	492.00
.........................................................................CACTTTGCAATTGGAGATTGCT..........................	22	1	4307.00	3614.00	123.00	76.00	494.00
........................................................................TCACTTTGCAATTGGAGATTGCT..........................	23	1	381.00	338.00	10.00	3.00	30.00
..........................TAATCTCAATTTGTAAATGTGA.........................................................................	22	1	289.00	201.00	46.00	21.00	21.00
..........................TAATCTCAATTTGTAAATGTGAGT.......................................................................	24	1	233.00	204.00	20.00	9.00	0.00
.........................................................................CACTTTGCAATTGGGGATTGCT..........................	22	1	165.00	137.00	15.00	12.00	1.00
..........................TAATCTCAATTTGTAAATGTGAGC.......................................................................	24	1	115.00	102.00	6.00	1.00	6.00
........................................................................TCACTTTGCAATTGGAGATTG............................	21	1	102.00	95.00	2.00	0.00	5.00
........................................................................TCACTTTGCAATTGGAGATTGC...........................	22	1	75.00	55.00	2.00	1.00	17.00
.........................................................................CACTTTGCAATTGGAGATTGC...........................	21	1	59.00	37.00	7.00	2.00	13.00
........................................................................TCACTTTGCAATTGGGGATTGCT..........................	23	1	30.00	25.00	4.00	1.00	0.00
..........................TAATCTCAATTTGTAAATGTTAG........................................................................	23	1	24.00	1.00	6.00	14.00	3.00
.........................................................................CACTTTGCAATTGGAGATTG............................	20	1	23.00	22.00	0.00	0.00	1.00
.........................................................................CACTTTGCAATTGGAGATTGCTT.........................	23	1	19.00	16.00	0.00	2.00	1.00
..........................TAATCTCAATTTGTAAATGT...........................................................................	20	1	19.00	16.00	3.00	0.00	0.00
..........................................................................ACTTTGCAATTGGAGATTGCT..........................	21	1	15.00	12.00	0.00	1.00	2.00
........................................................................TCACTTTGCAATTGGAGATTGT...........................	22	1	14.00	12.00	0.00	0.00	2.00
..........................TAATCTCAATTTGTAAATGTGT.........................................................................	22	1	13.00	10.00	2.00	1.00	0.00
..........................TAATCTCAATTTGTAAATGTGAGTC......................................................................	25	1	12.00	11.00	1.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAT........................................................................	23	1	11.00	1.00	2.00	7.00	1.00
..........................TAATATCAATTTGTAAATGTGAG........................................................................	23	1	11.00	1.00	3.00	1.00	6.00
.................................................CGATTTTTAACTATTTGACGCACT................................................	24	1	10.00	7.00	1.00	1.00	1.00
..........................TAATCTCAATTTGTAAATGTGAGA.......................................................................	24	1	10.00	7.00	1.00	0.00	2.00
.........................................................................CACCTTGCAATTGGAGATTGCT..........................	22	1	9.00	7.00	1.00	1.00	0.00
.........................................................................CACTTTGCAACTGGAGATTGCT..........................	22	1	9.00	2.00	1.00	4.00	2.00
...........................AATCTCAATTTGTAAATGTGAG........................................................................	22	1	8.00	5.00	0.00	2.00	1.00
..........................TAATCTCAATTTGTAAATGTG..........................................................................	21	1	8.00	7.00	1.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGCG........................................................................	23	1	8.00	2.00	1.00	2.00	3.00
.........................................................................CACTTTGCAATTGGAGCTTGCT..........................	22	1	8.00	0.00	0.00	4.00	4.00
..........................TAATCTCAATTTGTAAATGCGAG........................................................................	23	1	7.00	6.00	1.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGATTTCT..........................	22	1	7.00	5.00	1.00	1.00	0.00
.........................................................................AACTTTGCAATTGGAGATTGCT..........................	22	1	6.00	3.00	0.00	1.00	2.00
..............................CTCAATTTGTAAATGTGAG........................................................................	19	1	6.00	2.00	2.00	0.00	2.00
..........................TAATCTCAATTTGTAAATTTGAG........................................................................	23	1	6.00	2.00	1.00	3.00	0.00
........................................................................TCACTTTGCAATTGGAGATT.............................	20	1	6.00	6.00	0.00	0.00	0.00
........................................................................TCACTTTGCAATTGGGGATTG............................	21	1	6.00	3.00	2.00	1.00	0.00
..........................TAATCTCAATTTGTAAATGTAAG........................................................................	23	1	6.00	2.00	4.00	0.00	0.00
.........................................................................CACTTTTCAATTGGAGATTGCT..........................	22	1	6.00	5.00	0.00	0.00	1.00
.........................................................................CACTTTGCAATTGGAGGTTGCT..........................	22	1	6.00	4.00	1.00	0.00	1.00
.........................................................................CACTTTGCAATTTGAGATTGCT..........................	22	1	5.00	5.00	0.00	0.00	0.00
..........................TAACCTCAATTTGTAAATGTGAG........................................................................	23	1	5.00	2.00	1.00	1.00	1.00
.........................................................................CACTTTGCAATTGGAGATTGCTC.........................	23	1	5.00	5.00	0.00	0.00	0.00
..........................TAATCTCACTTTGTAAATGTGAG........................................................................	23	1	5.00	0.00	1.00	3.00	1.00
..........................TAATCTAAATTTGTAAATGTGAG........................................................................	23	1	5.00	2.00	1.00	0.00	2.00
.........................................................................TACTTTGCAATTGGAGATTGCT..........................	22	1	5.00	3.00	1.00	0.00	1.00
..........................TAATCTCAATTTGTAAATGTGGG........................................................................	23	1	5.00	2.00	2.00	0.00	1.00
..........................TAATCTCAGTTTGTAAATGTGAG........................................................................	23	1	5.00	1.00	2.00	1.00	1.00
..........................TAATCTCAATTTGTAAATGTGAA........................................................................	23	1	5.00	3.00	2.00	0.00	0.00
..........................TAATCTCAATTTGTCAATGTGAG........................................................................	23	1	5.00	0.00	0.00	3.00	2.00
..........................TAATCGCAATTTGTAAATGTGAG........................................................................	23	1	5.00	0.00	4.00	1.00	0.00
...........................................................................CTTTGCAATTGGAGATTGCT..........................	20	1	4.00	3.00	0.00	0.00	1.00
..........................TAATCTCAATTTGAAAATGTGAG........................................................................	23	1	4.00	1.00	2.00	0.00	1.00
..........................TAATCTCAATTTGTAAATGTGAGCT......................................................................	25	1	4.00	4.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGAGTGCT..........................	22	1	4.00	1.00	1.00	1.00	1.00
.........................TTAATCTCAATTTGTAAATGTGAG........................................................................	24	1	4.00	2.00	1.00	0.00	1.00
..........................TAATCTCAATTTGTAGATGTGAG........................................................................	23	1	4.00	1.00	1.00	2.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGTT..........................	23	1	4.00	3.00	1.00	0.00	0.00
.........................................................................CACTTGGCAATTGGAGATTGCT..........................	22	1	4.00	0.00	1.00	0.00	3.00
.........................................................................CACTTTGCAATTCGAGATTGCT..........................	22	1	4.00	2.00	0.00	0.00	2.00
.........................................................................CACTTTGCAATTGTAGATTGCT..........................	22	1	4.00	3.00	0.00	0.00	1.00
..........................TAATCTCAATTTGTAAGTGTGAG........................................................................	23	1	4.00	2.00	2.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTTAT........................................................................	23	1	4.00	0.00	1.00	3.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGA...........................	22	1	4.00	3.00	0.00	0.00	1.00
......CTCTTATCTGCAGCATTGAT...............................................................................................	20	1	4.00	2.00	1.00	1.00	0.00
.........................................................................CACTTTGCACTTGGAGATTGCT..........................	22	1	4.00	0.00	0.00	2.00	2.00
...........................AATCTCAATTTGTAAATGTGAGT.......................................................................	23	1	4.00	4.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGCGATTGCT..........................	22	1	4.00	0.00	1.00	2.00	1.00
..........................TAATCTCAATTTTTAAATGTGAG........................................................................	23	1	4.00	1.00	2.00	0.00	1.00
..........................TAATCCCAATTTGTAAATGTGAG........................................................................	23	1	4.00	2.00	1.00	0.00	1.00
.........................................................................CACTTTGCAATTAGAGATTGCT..........................	22	1	4.00	2.00	0.00	0.00	2.00
........................................................................TCACTTTGCAATTGGAGATTGCA..........................	23	1	4.00	2.00	1.00	0.00	1.00
.........................................................................CACTTTGCAATTGGAGATTGTT..........................	22	1	4.00	4.00	0.00	0.00	0.00
..........................TAATCTCGATTTGTAAATGTGAG........................................................................	23	1	4.00	1.00	1.00	1.00	1.00
..........................TAATCTCAATTTGTACATGTGAG........................................................................	23	1	4.00	0.00	1.00	3.00	0.00
..........................TAATCTCAATTTGTAACTGTGAG........................................................................	23	1	3.00	0.00	2.00	0.00	1.00
..........................TAATCTCCATTTGTAAATGTGAG........................................................................	23	1	3.00	1.00	0.00	1.00	1.00
.........................................................................CCCTTTGCAATTGGAGATTGCT..........................	22	1	3.00	2.00	0.00	0.00	1.00
.........................................................................CACTTTGAAATTGGAGATTGCT..........................	22	1	3.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATTTGAT........................................................................	23	1	3.00	0.00	0.00	1.00	2.00
.........................................................................CACTTTGTAATTGGAGATTGCT..........................	22	1	3.00	1.00	0.00	0.00	2.00
..........................TAAGCTCAATTTGTAAATGTGAG........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
..........................TAATCTCAACTTGTAAATGTGAG........................................................................	23	1	3.00	1.00	1.00	0.00	1.00
.........................................................................CACTTTGCGATTGGAGATTGCT..........................	22	1	3.00	0.00	0.00	1.00	2.00
..........................TAATCTCAATTTGTAAATGTGTG........................................................................	23	1	3.00	0.00	1.00	0.00	2.00
.........................................................................CACxTTGCAATTGGAGATTGCT..........................	21	1	3.00	3.00	0.00	0.00	0.00
.........................................................................CGCTTTGCAATTGGAGATTGCT..........................	22	1	3.00	1.00	0.00	0.00	2.00
.....................................................................CACTCACTTTGCAATTGGAGATTGCT..........................	26	1	3.00	3.00	0.00	0.00	0.00
..........................CAATCTCAATTTGTAAATGTGAG........................................................................	23	1	3.00	2.00	0.00	0.00	1.00
.........................................................................CACTTTGCAATTGxxGATTGCT..........................	20	1	3.00	3.00	0.00	0.00	0.00
.........................................................................CACTTTACAATTGGAGATTGCT..........................	22	1	3.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTxAATGTGAG........................................................................	22	1	3.00	2.00	1.00	0.00	0.00
........................................................................TCACTTTGCAATTGGAGATTGCTT.........................	24	1	3.00	3.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGATTCCT..........................	22	1	3.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATTTGTAAATGTGAGTT......................................................................	25	1	3.00	3.00	0.00	0.00	0.00
.........................................................................CACTTTGCAATTGGAGATT.............................	19	1	3.00	3.00	0.00	0.00	0.00
..........................TAATCTCAATTTGCAAATGTGAG........................................................................	23	1	3.00	1.00	1.00	0.00	1.00
.........................................................................CACTTTGCAATTGGAGACTGCT..........................	22	1	3.00	0.00	0.00	1.00	2.00
.........................................................................CACTTTGCAATTGGAGATTGCA..........................	22	1	3.00	3.00	0.00	0.00	0.00

droGri2

TTGTTAACT-TATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATTATTAAGAATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT	Size	Hit Count	Total Norm	V109 Male body
.........................................................................CACTTTGCAATTGGAGATTGCT..........................	22	1	373.00	373.00
..........................TAATCTCAATTTGTAAATGTGAG........................................................................	23	1	138.00	138.00
........................................................................TCACTTTGCAATTGGAGATTGCT..........................	23	1	16.00	16.00
..........................TAATCTCAATTTGTAAATGTGA.........................................................................	22	1	7.00	7.00
.........................................................................CACTTTGCAATTGGAGACTGCT..........................	22	1	7.00	7.00
.........................................................................CACTTTGCAATTGGAGAATGCT..........................	22	1	5.00	5.00
..........................TAATCTCAATTTGTAAAAGTGAG........................................................................	23	1	3.00	3.00
.........................................................................CACTTTGCAATTGGAGATTGC...........................	21	1	3.00	3.00
.........................................................................CACTTTGCAATTGGAGAGTGCT..........................	22	1	3.00	3.00
..........................................................................ACTTTGCAATTGGAGATTGCT..........................	21	1	3.00	3.00
........................................................................TCACTTTGCAATTGGAGATTG............................	21	1	3.00	3.00
..........................TAATCTCAATCTGTAAATGTGAG........................................................................	23	1	2.00	2.00
.........................................................................CAATTTGCAATTGGAGATTGCT..........................	22	1	2.00	2.00
.........................................................................CACTTTGCAATTGGGGATTGCT..........................	22	1	2.00	2.00
........................................................................TCACTTTGCAATTGGAGATTGCG..........................	23	1	1.00	1.00
.........................................................................CACTTTGCAATTGGAGATTG............................	20	1	1.00	1.00
..........................TAACCTCAATTTGTAAATGTGAG........................................................................	23	1	1.00	1.00
........................................................................TCCCTTTGCAATTGGAGATTGCT..........................	23	1	1.00	1.00
.........................................................................CACTTTGCGATTGGAGATTGCT..........................	22	1	1.00	1.00
........................................................................TCACTTTGCAATTGGAGATTGT...........................	22	1	1.00	1.00
..........................TAATCTCAATTTGTAAATGTGAA........................................................................	23	1	1.00	1.00
.........................................................................CACTTTGCAATTGGCGATTGCT..........................	22	1	1.00	1.00
..........................CAATCTCAATTTGTAAATGTGAG........................................................................	23	1	1.00	1.00
.........................................................................CACTTxxCAATTGGAGATTGCT..........................	20	1	1.00	1.00
.........................................................................CACTTTGCAATTGGAGATTGCTT.........................	23	1	1.00	1.00
..........................TACTCTCAATTTGTAAATGTGAG........................................................................	23	1	1.00	1.00
..........................TAATCTCAATTTGTAAAGGTGAG........................................................................	23	1	1.00	1.00
..........................TAATCTCAATTTGTAAATGT...........................................................................	20	1	1.00	1.00
..........................TAATCTCAATTTGTGAATGTGAG........................................................................	23	1	1.00	1.00
........................................................................TCACTTTGCAATTGGAGATTGC...........................	22	1	1.00	1.00
..........................TAATCTAAATTTGTAAATGTGAA........................................................................	23	1	1.00	1.00
.........................................................................CACTTTACAATTGGGGATTGCT..........................	22	1	1.00	1.00
.........................................................................CACCTTGCAATTGGAGATTGCT..........................	22	1	1.00	1.00
..........................TAATCTCAATTTGTAAATGTG..........................................................................	21	1	1.00	1.00
..........................TAATCTCAATTTGCAAATGTGAG........................................................................	23	1	1.00	1.00
.........................................................................CACTTTGCAATTGGAAATTGCT..........................	22	1	1.00	1.00
........................................................................TCACTTTGCAATTGGAGATTGCTT.........................	24	1	1.00	1.00
.................................................CGATTATTAAGAATTTGACGCACT................................................	24	1	1.00	1.00
..........................TAATCTCAATTTGTAAATGCGAG........................................................................	23	1	1.00	1.00
.........................................................................CACTTTGCAATTGGACATTGCT..........................	22	1	1.00	1.00
.........................................................................CACTCTGCAATTGGAGATTGCT..........................	22	1	1.00	1.00
.........................................................................CACTTTGCACTTGGAGATTGCT..........................	22	1	1.00	1.00
.........................................................................CACTTTGCAATTGGAGATT.............................	19	1	1.00	1.00
.........................................................................CACTTTACAATTGGAGATTGCT..........................	22	1	1.00	1.00
.........................................................................CATTTTGCAATTGGAGATTGCT..........................	22	1	1.00	1.00
..........................TAATCTCAATTTGTAAATGTGAC........................................................................	23	1	1.00	1.00
..........................TAATCTCAATTTGTAAATGTGAT........................................................................	23	1	1.00	1.00
........................................................................TCACTTTGCAATTGGAGGTTGC...........................	22	1	1.00	1.00
...........................................................................CTTTGCAATTGGAGATTGCT..........................	20	1	1.00	1.00
........................................................................TCACTTTGTAATTGGAGATTGCT..........................	23	1	1.00	1.00
.........................................................................CACTTAGCAATTGGAGATTGCT..........................	22	1	1.00	1.00
...........................AATCTCAATTTGTAAATGTGAG........................................................................	22	1	1.00	1.00
.........................................................................CACTTTGCAGTTGGAGATTGC...........................	21	1	1.00	1.00
.........................................................................CACTTTGCCATTGGAGATTGCT..........................	22	1	1.00	1.00
.........................................................................CACTTTGCTATTGGAGATTGCT..........................	22	1	1.00	1.00
.......................................................................CTCACTTTGCAATTGGAGATTGCT..........................	24	1	1.00	1.00

Generated: 04/20/2012 at 05:18:35 EDT

dme-mir-304

chrX:15402992-15403079 +

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup