dme-mir-283- Best orthologs

dme-mir-283	chrX:15401989-15402088 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 15402009-15402031
   star strand at position 15402056-15402077
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chrX:15401974-15402103 +		1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droSim1	chrX_random:4022807-4022936 +	LASTZ	1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droSec1	super_73:136400-136529 +	LASTZ	1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droYak2	chrX:9587590-9587719 +	LASTZ	1	AG---AGAA-AAG----------T---------------GT-C-------ACCTTACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droEre2	scaffold_4690:11632475-11632604 -	LASTZ	1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droEug1	scf7180000409533:551298-551429 +	LASTZ	4	AG---AGAA-AAG----------T---------------GT-C------CACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAAA
droBia1	scf7180000302041:36406-36534 +	LASTZ	4	AG---AGAA-AAG----------T---------------GC-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droTak1	scf7180000414432:172281-172412 +	LASTZ	4	AG---AGAA-AAG----------T---------------GT-C------CACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCAAA
droEle1	scf7180000491023:1180304-1180433 -	LASTZ	4	GG---AGAA-AAG----------T---------------GT-C-------ACATCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGTCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCAA-
droRho1	scf7180000777097:75135-75263 -	LASTZ	4	GG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droFic1	scf7180000454038:645767-645895 +	LASTZ	4	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACAGGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droKik1	scf7180000302696:759820-759953 +	LASTZ	4	AGCAAAGAACCAG----------T---------------GT-CA----CCTCCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCGTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCAC----
droAna3	scaffold_12929:2900376-2900509 -	LASTZ	1	GT---GTTA-CAG----------T---------------GTTCA----CCACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTGATTA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTCGAATTGCATTTTATCACCAA-
droBip1	scf7180000396740:82101-82227 -	LASTZ	4	A---------AAG----------T---------------GTTCA----CCACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTCTGAATTGCATTTTATCACC---
dp4	chrXL_group1a:976013-976147 +	LASTZ	1	AG---AGAA--AG----------C------------GACGT-CACGATTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droPer1	super_26:1090677-1090833 +	LASTZ	1	AG---AGCG-AA-CGAGAGAGAGTGCCAGAGAAAGCGACGT-CACGATTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droWil1	scaffold_180702:1594772-1594907 -	LASTZ	1	GA----GTGCGAGTGGGA-----G---------------GG-A-------GCCTAACG-AATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAGATATTTGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAA-
droVir3	scaffold_12970:2047646-2047770 +	LASTZ	1	AC---A-----AG----A-----T---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACC---
droMoj3	scaffold_6359:3257693-3257822 +	LASTZ	1	AG---TGAACCAG----C-----T---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCC-AATA--TGAAACACTCGGAATTTCAGTTGGTATATACTTTTTTGAATTGCATTTTATCACCA--
droGri2	scaffold_14853:6953507-6953633 -	LASTZ	1	AG---AATG-A------------C---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCC-AAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droSim1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droSec1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droYak2	AG---AGAA-AAG----------T---------------GT-C-------ACCTTACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droEre2	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droEug1	AG---AGAA-AAG----------T---------------GT-C------CACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAAA
droBia1	AG---AGAA-AAG----------T---------------GC-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droTak1	AG---AGAA-AAG----------T---------------GT-C------CACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCAAA
droEle1	GG---AGAA-AAG----------T---------------GT-C-------ACATCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGTCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCAA-
droRho1	GG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droFic1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACAGGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droKik1	AGCAAAGAACCAG----------T---------------GT-CA----CCTCCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCGTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCAC----
droAna3	GT---GTTA-CAG----------T---------------GTTCA----CCACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTGATTA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTCGAATTGCATTTTATCACCAA-
droBip1	A---------AAG----------T---------------GTTCA----CCACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTCTGAATTGCATTTTATCACC---
dp4	AG---AGAA--AG----------C------------GACGT-CACGATTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droPer1	AG---AGCG-AA-CGAGAGAGAGTGCCAGAGAAAGCGACGT-CACGATTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droWil1	GA----GTGCGAGTGGGA-----G---------------GG-A-------GCCTAACG-AATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAGATATTTGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAA-
droVir3	AC---A-----AG----A-----T---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACC---
droMoj3	AG---TGAACCAG----C-----T---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCC-AATA--TGAAACACTCGGAATTTCAGTTGGTATATACTTTTTTGAATTGCATTTTATCACCA--
droGri2	AG---AATG-A------------C---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCC-AAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	20773.00	7202.00	1613.00	2281.00	9677.00
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	1	6897.00	102.00	3314.00	2312.00	1169.00
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	1	1751.00	1.00	567.00	489.00	694.00
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	1	1515.00	176.00	256.00	403.00	680.00
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	1136.00	191.00	241.00	228.00	476.00
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	957.00	252.00	119.00	216.00	370.00
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	1	763.00	17.00	226.00	363.00	157.00
........................................................................AAATATCAGCTGGTAATTCTGGGC..........................................................................	24	1	356.00	14.00	73.00	59.00	210.00
........................................................................AAATATCAGCTGGTAATTCTGGGG..........................................................................	24	1	229.00	6.00	27.00	55.00	141.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	1	196.00	41.00	98.00	43.00	14.00
........................................................................AAATATCAGCTGGTAATTCTTGG...........................................................................	23	1	155.00	153.00	0.00	0.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGGGTT.........................................................................	25	1	134.00	5.00	33.00	77.00	19.00
........................................................................AAATATCAGCTGGGAATTCTGGG...........................................................................	23	1	128.00	34.00	14.00	7.00	73.00
........................................................................AAATATCAGCTGGTAATTCTGA............................................................................	22	1	125.00	0.00	69.00	48.00	8.00
........................................................................AAATATCAGCTGGTAATTCTGGT...........................................................................	23	1	113.00	20.00	27.00	54.00	12.00
........................................................................AAATATCAGCTGGTAATTCTGTG...........................................................................	23	1	112.00	110.00	0.00	1.00	1.00
.........................................................................................................................CGGAATTTCAGTTGGTATCG.............................	20	1	99.00	0.00	29.00	25.00	45.00
........................................................................AAATATCAGCTGTTAATTCTGGG...........................................................................	23	1	91.00	4.00	9.00	6.00	72.00
...........................................................................TATCAGCTGGTAATTCTGGGAGCT.......................................................................	24	1	86.00	0.00	7.00	11.00	68.00
........................................................................AAATATCAGCTGGTAATTCTGT............................................................................	22	1	68.00	2.00	40.00	26.00	0.00
.......................................................................TAAATATCAGCTGGTAATTCTGGG...........................................................................	24	1	67.00	23.00	4.00	14.00	26.00
.....................................................TCACACGATTCTCAAAGGT..................................................................................................	19	1	64.00	48.00	2.00	0.00	14.00
.......................................................................TAAATATCAGCTGGTAATTCTG.............................................................................	22	1	63.00	2.00	24.00	21.00	16.00
........................................................................AAATATCAGCTGGTAATTCTGGGAT.........................................................................	25	1	52.00	2.00	21.00	18.00	11.00
........................................................................AAATATCAGCTGGCAATTCTGGG...........................................................................	23	1	51.00	38.00	1.00	2.00	10.00
........................................................................AAATATCAGCTGGTCATTCTGGG...........................................................................	23	1	49.00	49.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGC...........................................................................	23	1	47.00	13.00	7.00	10.00	17.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	1	41.00	36.00	0.00	3.00	2.00
...........................................................................TATCAGCTGGTAATTCTGGGAGC........................................................................	23	1	36.00	9.00	4.00	4.00	19.00
.........................................................................AATATCAGCTGGTAATTCTGGG...........................................................................	22	1	35.00	16.00	4.00	6.00	9.00
........................................................................AAATATCAGCTGCTAATTCTGGG...........................................................................	23	1	32.00	2.00	2.00	1.00	27.00
........................................................................AAATATCAGCTGGGAATTCTG.............................................................................	21	1	29.00	1.00	9.00	11.00	8.00
........................................................................AAATATCAGCCGGTAATTCTGGG...........................................................................	23	1	27.00	9.00	4.00	2.00	12.00
........................................................................AAATATCAGCTGGTGATTCTGGG...........................................................................	23	1	25.00	21.00	0.00	1.00	3.00
.......................................................................TAAATATCAGCTGGTAATTC...............................................................................	20	1	24.00	0.00	6.00	8.00	10.00
........................................................................AAATATCAGCTGTTAATTCTGG............................................................................	22	1	24.00	0.00	6.00	3.00	15.00
........................................................................AAATATCAGCTGGAAATTCTGGG...........................................................................	23	1	22.00	5.00	1.00	1.00	15.00
........................................................................AAATATCAGCTGGTAATTCTGAC...........................................................................	23	1	21.00	0.00	4.00	3.00	14.00
........................................................................AAATATCATCTGGTAATTCTG.............................................................................	21	1	21.00	0.00	11.00	4.00	6.00
..........................................................................ATATCAGCTGGTAATTCTGGG...........................................................................	21	1	20.00	10.00	0.00	2.00	8.00
........................................................................AAATATCAGCTGGTAATTCTGCG...........................................................................	23	1	19.00	18.00	0.00	1.00	0.00
........................................................................GAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	18.00	13.00	1.00	1.00	3.00
........................................................................AAATATCAGCTGGTAATTCCGGG...........................................................................	23	1	18.00	9.00	0.00	1.00	8.00
........................................................................AAATATCAGCTGGTAATTCTGAG...........................................................................	23	1	18.00	8.00	0.00	0.00	10.00
........................................................................AGATATCAGCTGGTAATTCTGGG...........................................................................	23	1	18.00	7.00	2.00	1.00	8.00
.......................................................................CAAATATCAGCTGGTAATTCTGGG...........................................................................	24	1	18.00	14.00	0.00	0.00	4.00
........................................................................AAATATCATCTGGTAATTCTGGG...........................................................................	23	1	18.00	2.00	0.00	0.00	16.00
........................................................................AAATATCAGCTGGTAATTCTGGGAA.........................................................................	25	1	18.00	3.00	3.00	1.00	11.00
........................................................................AAATATCAGATGGTAATTCTGGG...........................................................................	23	1	17.00	17.00	0.00	0.00	0.00
........................................................................AAACATCAGCTGGTAATTCTGGG...........................................................................	23	1	17.00	11.00	0.00	0.00	6.00
........................................................................AAATATCAGCTGGTAATTCTCGG...........................................................................	23	1	17.00	15.00	0.00	0.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGGAA..........................................................................	24	1	16.00	1.00	6.00	6.00	3.00
........................................................................AAATATCAGCTGGTAATT................................................................................	18	1	16.00	7.00	4.00	5.00	0.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGAC...........................	22	1	16.00	15.00	0.00	0.00	1.00
........................................................................AAATATAAGCTGGTAATTCTGGG...........................................................................	23	1	16.00	15.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTTTGGG...........................................................................	23	1	16.00	12.00	0.00	1.00	3.00
........................................................................AAATATCAGCTGGTACTTCTGGG...........................................................................	23	1	15.00	15.00	0.00	0.00	0.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGA............................	21	1	15.00	3.00	3.00	5.00	4.00
........................................................................AAATATCAGCTGGTAATTCGG.............................................................................	21	1	15.00	0.00	5.00	8.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGTT...........................................................................	23	1	14.00	3.00	10.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGAT..........................................................................	24	1	14.00	0.00	7.00	7.00	0.00
........................................................................AAATATCAGCTGGTAATTATGGG...........................................................................	23	1	14.00	12.00	0.00	0.00	2.00
........................................................................AAATATCAGCTTGTAATTCTGGG...........................................................................	23	1	14.00	1.00	1.00	3.00	9.00
........................................................................AAATATCAGCTCGTAATTCTGGG...........................................................................	23	1	13.00	2.00	1.00	0.00	10.00
..........................................................................ATATCAGCTGGTAATTCTG.............................................................................	19	1	13.00	0.00	2.00	7.00	4.00
.........................................................................AATATCAGCTGGTAATTCTG.............................................................................	20	1	13.00	1.00	5.00	6.00	1.00
........................................................................AAATATCAGCTGGTTATTCTGGG...........................................................................	23	1	13.00	13.00	0.00	0.00	0.00
.......................................................................TAAATATCAGCTGGTAATTCTGG............................................................................	23	1	13.00	5.00	1.00	1.00	6.00
........................................................................AAATAGCAGCTGGTAATTCTGGG...........................................................................	23	1	12.00	11.00	0.00	1.00	0.00
........................................................................AAATATCAGCCGGTAATTCTG.............................................................................	21	1	12.00	0.00	5.00	5.00	2.00
........................................................................AAATATCAGCTGGTAATTCTTTG...........................................................................	23	1	12.00	12.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGAC..........................................................................	24	1	12.00	0.00	5.00	2.00	5.00
........................................................................AAATATCAGCTGATAATTCTGGG...........................................................................	23	1	12.00	4.00	0.00	3.00	5.00
........................................................................AAATATCAGCTGGTAATTCTAGG...........................................................................	23	1	12.00	10.00	0.00	0.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGGGAC.........................................................................	25	1	11.00	0.00	5.00	3.00	3.00
........................................................................AAATATCAGCTGGGAATTC...............................................................................	19	1	10.00	0.00	3.00	3.00	4.00
........................................................................................................................TCGGAATTTCAGTTGGTATCG.............................	21	1	10.00	0.00	9.00	0.00	1.00
........................................................................AAATATCAGCTGGCAATTCTG.............................................................................	21	1	10.00	2.00	2.00	4.00	2.00
...........................................................................TATCAGCTGGTAATTCTGGG...........................................................................	20	1	10.00	9.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGGGAAA........................................................................	26	1	10.00	3.00	1.00	0.00	6.00
........................................................................AAATATCAGCTGGTAATTCTGGGTA.........................................................................	25	1	10.00	1.00	2.00	3.00	4.00
...........................................................................TATCAGCTGGTAATTCTGGGAGCC.......................................................................	24	1	10.00	0.00	0.00	0.00	10.00
........................................................................AAATATCAGCTGGTAATTCTC.............................................................................	21	1	10.00	1.00	4.00	3.00	2.00
........................................................................AAATATCAACTGGTAATTCTGGG...........................................................................	23	1	9.00	5.00	1.00	1.00	2.00
........................................................................AAATGTCAGCTGGTAATTCTGGG...........................................................................	23	1	9.00	5.00	0.00	2.00	2.00
........................................................................AAATATCAGCTGGGAATTCTGGGT..........................................................................	24	1	9.00	1.00	3.00	0.00	5.00
........................................................................AAATATCAGCTxGTAATTCTGGG...........................................................................	22	1	9.00	1.00	0.00	3.00	5.00
........................................................................AAATATCAGCTGGGAATTCTGGGA..........................................................................	24	1	9.00	0.00	2.00	1.00	6.00
........................................................................AAATATCACCTGGTAATTCTGGG...........................................................................	23	1	8.00	1.00	0.00	0.00	7.00
........................................................................AAATATCCGCTGGTAATTCTGGG...........................................................................	23	1	8.00	8.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAAGTCTGGG...........................................................................	23	1	8.00	7.00	0.00	0.00	1.00
........................................................................ACATATCAGCTGGTAATTCTGGG...........................................................................	23	1	8.00	8.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGT...........................................................................	23	1	8.00	8.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGCTAATTCTGG............................................................................	22	1	7.00	1.00	2.00	0.00	4.00
........................................................................AAATATCAGCTGGTAATTCGGGG...........................................................................	23	1	7.00	6.00	1.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGG............................................................................	22	1	7.00	0.00	0.00	1.00	6.00
........................................................................AAATATCAGCTGTTAATTCTG.............................................................................	21	1	7.00	0.00	1.00	2.00	4.00
........................................................................AAATATCAGCTGGTAATTCTGC............................................................................	22	1	7.00	0.00	3.00	4.00	0.00
........................................................................AAATACCAGCTGGTAATTCTGGG...........................................................................	23	1	6.00	5.00	0.00	0.00	1.00
........................................................................AAATATCAGCTAGTAATTCTGGG...........................................................................	23	1	6.00	4.00	0.00	0.00	2.00
........................................................................AAATATCACCTGGTAATTCTG.............................................................................	21	1	6.00	0.00	3.00	1.00	2.00

droSec1

AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	2	5775.50	363.50	4955.50	456.50
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	2	1490.00	313.50	1090.00	86.50
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	2	739.50	194.50	489.00	56.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	2	432.00	125.00	67.00	240.00
.....................................................TCACACGATTCTCAAAGGT..................................................................................................	19	2	280.00	3.00	261.50	15.50
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	2	228.50	26.00	182.00	20.50
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	2	186.50	41.00	55.00	90.50
........................................................................AAATATCAGCTGGTAATT................................................................................	18	2	95.00	8.00	73.50	13.50
.........................................................................AATATCAGCTGGTAATTCTGGG...........................................................................	22	2	57.50	6.50	45.50	5.50
........................................................................AAATATCAGCTGGTAATTCTGGT...........................................................................	23	2	56.00	13.00	33.00	10.00
........................................................................AAATATCAGCTGGTAATTCTGGGTT.........................................................................	25	2	49.00	19.50	21.00	8.50
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	2	36.50	10.00	19.50	7.00
........................................................................AAATATTAGCTGGTAATTCTGGG...........................................................................	23	2	34.00	0.00	33.50	0.50
.........................................................................................................................CGGAATTTCAGTTGGTATCGAC...........................	22	2	32.50	7.00	25.50	0.00
..........................................................................ATATCAGCTGGTAATTCTGGG...........................................................................	21	2	25.00	3.50	21.50	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGAT.........................................................................	25	2	24.00	10.50	9.00	4.50
.......................................................................TAAATATCAGCTGGTAATTCTGGG...........................................................................	24	2	23.00	0.00	22.00	1.00
....................................................CTCACACGATTCTCAAAGGT..................................................................................................	20	2	21.50	1.00	18.50	2.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGA............................	21	2	19.50	12.00	7.00	0.50
........................................................................AAATATCAGCTGGTAATTCTGGGAA.........................................................................	25	2	18.50	7.00	11.00	0.50
......................................................CACACGATTCTCAAAGGT..................................................................................................	18	2	18.00	0.00	16.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGT............................................................................	22	2	17.50	5.50	1.50	10.50
........................................................................AAAAATCAGCTGGTAATTCTGGG...........................................................................	23	2	17.00	0.00	17.00	0.00
...........................................................................TATCAGCTGGTAATTCTGGGAGC........................................................................	23	2	15.00	3.50	11.50	0.00
.......................................................................TAAATATCAGCTGGTAATTCT..............................................................................	21	2	14.50	3.50	3.00	8.00
.........................................................................AATATCAGCTGGTAATTCTGGGA..........................................................................	23	2	13.50	7.00	6.50	0.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	2	13.00	1.50	11.00	0.50
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	2	10.50	1.00	4.00	5.50
........................................................................AAATATCAGTTGGTAATTCTGGG...........................................................................	23	2	10.50	0.00	10.00	0.50
..........................................................................AAATCAGCTGGTAATTCTGGG...........................................................................	21	2	10.00	0.00	10.00	0.00
........................................................................AAATATCAGCTGGTxATTCTGGG...........................................................................	22	2	10.00	0.00	10.00	0.00
........................................................................AAATATCAGCTGGTAATTTTGGG...........................................................................	23	2	9.50	3.50	6.00	0.00
........................................................................AAATATCAGCTGGCAATTCTGGG...........................................................................	23	2	9.00	0.00	8.00	1.00
........................................................................AAATATCGGCTGGTAATTCTGGG...........................................................................	23	2	8.50	1.00	7.00	0.50
.........................................................................AATATCAGCTGGTAATTCTGGGT..........................................................................	23	2	8.00	3.50	3.00	1.50
........................................................................AAATATCAGCTGGTAATTATGGG...........................................................................	23	2	8.00	6.00	0.50	1.50
........................................................................AAATATCAGCTxGTAATTCTGGG...........................................................................	22	2	8.00	1.50	6.50	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGC..........................................................................	24	2	8.00	3.50	4.50	0.00
.........................................................................AAAATCAGCTGGTAATTCTGGG...........................................................................	22	2	7.00	0.00	7.00	0.00
........................................................................AAATATCAGCTGGTAGTTCTGGG...........................................................................	23	2	7.00	0.00	7.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGC...........................................................................	23	2	7.00	1.00	4.50	1.50
........................................................................AAATATCAGCTGGTAATCCTGGG...........................................................................	23	2	7.00	0.00	6.00	1.00
........................................................................AAATATCAGCCGGTAATTCTGGG...........................................................................	23	2	7.00	0.00	6.50	0.50
...........................................................................TATCAGCTGGTAATTCTGGG...........................................................................	20	2	6.00	0.00	5.50	0.50
.......................................................................TAAATATCAGCTGGTAATTCTG.............................................................................	22	2	6.00	2.00	1.50	2.50
........................................................................GAATATCAGCTGGTAATTCTGGG...........................................................................	23	2	5.50	0.00	5.00	0.50
........................................................................AAATATCAGTTGGTAATTCTGG............................................................................	22	2	5.50	0.00	5.50	0.00
........................................................................AAATATCACCTGGTAATTCTGGG...........................................................................	23	2	5.50	0.00	5.00	0.50
........................................................................AAATATCAGCTGGTAATTTTGGGT..........................................................................	24	2	5.50	1.00	4.50	0.00
........................................................................AAATATCAGCTGGAAATTCTGGG...........................................................................	23	2	5.50	0.00	5.50	0.00
........................................................................AAATATCAGCTGGTAATTCTGAG...........................................................................	23	2	5.00	0.00	4.50	0.50
........................................................................TAATATCAGCTGGTAATTCTGGG...........................................................................	23	2	5.00	0.50	3.50	1.00
........................................................................AAATATCAGCTGGTAATTCTGGGAAA........................................................................	26	2	5.00	0.00	5.00	0.00
........................................................................AAGTATCAGCTGGTAATTCTGGG...........................................................................	23	2	5.00	1.00	4.00	0.00
........................................................................AAATATCAACTGGTAATTCTGGG...........................................................................	23	2	4.50	0.00	4.00	0.50
........................................................................AAATATCAGCTAGTAATTCTGGG...........................................................................	23	2	4.50	0.00	4.50	0.00
........................................................................AAATATCAGCTGGTAATTCTT.............................................................................	21	2	4.50	1.00	0.00	3.50
........................................................................AAATATCAGCTGGTGATTCTGGG...........................................................................	23	2	4.50	0.00	4.50	0.00
........................................................................AAATGTCAGCTGGTAATTCTGGG...........................................................................	23	2	4.50	0.00	4.50	0.00
........................................................................AAATATCAGCTGGTAATTCCGGG...........................................................................	23	2	4.50	0.50	3.50	0.50
........................................................................AAATATCAGCTGGTAATTCTTGG...........................................................................	23	2	4.50	0.50	4.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGG..........................................................................	24	2	4.50	0.00	3.50	1.00
........................................................................AAACATCAGCTGGTAATTCTGGG...........................................................................	23	2	4.50	0.00	4.00	0.50
.......................................................................CAAATATCAGCTGGTAATTCTGGG...........................................................................	24	2	4.50	0.50	4.00	0.00
........................................................................AAATATCATCTGGTAATTCTGGG...........................................................................	23	2	4.50	0.50	3.50	0.50
........................................................................ACATATCAGCTGGTAATTCTGGG...........................................................................	23	2	4.50	0.00	4.00	0.50
.........................................................................................................................CGGAATTTCAGTTGGTATCG.............................	20	2	4.50	3.00	1.00	0.50
........................................................................AAATATCAGCTGGTAATTCTGGGTA.........................................................................	25	2	4.50	1.00	3.50	0.00
...........................................................................TATCAGCTGGTAATTCTGGGAG.........................................................................	22	2	4.50	0.50	3.50	0.50
........................................................................AAATACCAGCTGGTAATTCTGGG...........................................................................	23	2	4.00	0.50	3.50	0.00
..................................................................................TGGTAATTCTxAGAGCTAA.....................................................................	18	2	4.00	0.00	3.50	0.50
........................................................................AAATATCAGCTGGTAACTCTGGG...........................................................................	23	2	4.00	0.00	4.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGTG...........................................................................	23	2	4.00	0.00	3.00	1.00
.......................................................................TAAATATCAGCTGGTAATTCTGGGT..........................................................................	25	2	4.00	1.50	2.00	0.50
........................................................................AGATATCAGCTGGTAATTCTGGG...........................................................................	23	2	4.00	0.00	3.50	0.50
........................................................................AAAAATCAGCTGGTAATTCTGGGT..........................................................................	24	2	4.00	0.00	3.50	0.50
........................................................................AAATATCAGCTCGTAATTCTGGG...........................................................................	23	2	3.50	0.50	2.50	0.50
........................................................................AAATATCAGCTGCTAATTCTGGG...........................................................................	23	2	3.50	0.00	3.00	0.50
...................................................CCTCACACGATTCTCAAAGGT..................................................................................................	21	2	3.50	0.00	3.50	0.00
........................................................................AAATATCAGTTGGTAATTCTGGGT..........................................................................	24	2	3.50	0.00	3.00	0.50
........................................................................AAATATCAGCTGGTxATTCTGGGT..........................................................................	23	2	3.50	0.00	3.50	0.00
..........................................................................ATATCAGCTGGTAATTCTGGGT..........................................................................	22	2	3.50	1.00	2.50	0.00
........................................................................AAATATCAGCTGGTTATTCTGGG...........................................................................	23	2	3.50	0.00	3.50	0.00
........................................................................AAATATCAGCAGGTAATTCTGGG...........................................................................	23	2	3.00	0.00	3.00	0.00
...........................................................................TATCAGCTGGTAATTCTGGGAGCT.......................................................................	24	2	3.00	0.00	3.00	0.00
........................................................................AAATATCAGCTGGTAATTAT..............................................................................	20	2	3.00	2.50	0.00	0.50
........................................................................AAATATCAGATGGTAATTCTGGG...........................................................................	23	2	3.00	0.50	1.00	1.50
........................................................................AAATATTAGCTGGTAATTCTGGGA..........................................................................	24	2	3.00	0.50	2.50	0.00
........................................................................AAATATCAGCTGGTAATTCTCGG...........................................................................	23	2	3.00	0.50	2.00	0.50
........................................................................AAATATCAGCTGGTAATTCTAGG...........................................................................	23	2	3.00	0.00	2.50	0.50
........................................................................AAATATCAGCTGGTACTTCTGGGT..........................................................................	24	2	3.00	0.00	3.00	0.00
........................................................................ATATATCAGCTGGTAATTCTGGG...........................................................................	23	2	2.50	0.00	2.50	0.00
.....................................................TCACATGATTCTCAAAGGT..................................................................................................	19	2	2.50	0.00	2.50	0.00
........................................................................AAATATTAGCTGGTAATTCTGGGT..........................................................................	24	2	2.50	0.50	2.00	0.00
........................................................................AAATATCAGCTGGTAATTATGGGT..........................................................................	24	2	2.50	2.00	0.50	0.00
.........................................................................AATATCAGCTGGTAATTCTG.............................................................................	20	2	2.50	0.50	1.50	0.50
........................................................................AAATGTCAGCTGGTAATTCTGGGT..........................................................................	24	2	2.50	0.50	2.00	0.00
........................................................................AAATATCAGCTTGTAATTCTGGG...........................................................................	23	2	2.50	0.50	1.50	0.50
........................................................................AAATATCAGCTGGTCATTCTGGG...........................................................................	23	2	2.50	0.00	2.00	0.50
........................................................................AAATATCAGCTGATAATTCTGGG...........................................................................	23	2	2.50	0.00	2.00	0.50
........................................................................AAATATCAGCTGGTAATTGTGGGT..........................................................................	24	2	2.50	2.50	0.00	0.00

droYak2

AG---AGAA-AAG----------T---------------GT-C-------ACCTTACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	8366.00	7214.00	31.00	163.00	84.00	874.00
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	1	937.00	45.00	3.00	26.00	14.00	849.00
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	443.00	260.00	6.00	54.00	41.00	82.00
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	344.00	133.00	5.00	97.00	27.00	82.00
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	1	226.00	92.00	1.00	12.00	4.00	117.00
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	1	218.00	0.00	3.00	1.00	3.00	211.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	1	176.00	22.00	15.00	71.00	57.00	11.00
........................................................................AAATATCAGCTGGTAATTCTTGG...........................................................................	23	1	132.00	125.00	5.00	0.00	1.00	1.00
.....................................................TTACACGATTCTCAAAGGT..................................................................................................	19	1	128.00	112.00	1.00	8.00	5.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	1	94.00	17.00	1.00	1.00	1.00	74.00
........................................................................AAATATCAGCTGGTAATTCTGGGTT.........................................................................	25	1	56.00	1.00	3.00	3.00	2.00	47.00
........................................................................AAATATCAGCTGGTAATTCTGTG...........................................................................	23	1	52.00	43.00	0.00	0.00	9.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGT...........................................................................	23	1	51.00	17.00	1.00	10.00	6.00	17.00
........................................................................AAATATCAGCTGGTAATTCTGGGC..........................................................................	24	1	48.00	9.00	0.00	1.00	0.00	38.00
........................................................................AAATATCAGCTGGTCATTCTGGG...........................................................................	23	1	42.00	40.00	1.00	0.00	1.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGGG...........................................................................	23	1	33.00	16.00	0.00	1.00	1.00	15.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	1	29.00	27.00	0.00	2.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGG..........................................................................	24	1	21.00	3.00	0.00	0.00	0.00	18.00
........................................................................AAATATCAGCTGGCAATTCTGGG...........................................................................	23	1	20.00	18.00	0.00	1.00	1.00	0.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGAC...........................	22	1	19.00	11.00	0.00	8.00	0.00	0.00
..........................................................................ATATCAGCTGGTAATTCTGGG...........................................................................	21	1	16.00	8.00	0.00	4.00	1.00	3.00
........................................................................AAATATCAGCTGGTAATTCTGCG...........................................................................	23	1	16.00	15.00	0.00	1.00	0.00	0.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGA............................	21	1	16.00	5.00	1.00	9.00	1.00	0.00
........................................................................AAATATCAGCTGGTTATTCTGGG...........................................................................	23	1	15.00	15.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTATGGG...........................................................................	23	1	14.00	14.00	0.00	0.00	0.00	0.00
........................................................................AAATATAAGCTGGTAATTCTGGG...........................................................................	23	1	14.00	14.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTGATTCTGGG...........................................................................	23	1	13.00	12.00	0.00	1.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTCGG...........................................................................	23	1	13.00	13.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTACTTCTGGG...........................................................................	23	1	12.00	12.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCCGGG...........................................................................	23	1	12.00	12.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCTG.............................................................................	21	1	12.00	0.00	0.00	0.00	0.00	12.00
........................................................................AAATATCAGCTGGTAATT................................................................................	18	1	12.00	7.00	0.00	3.00	0.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGGGAA.........................................................................	25	1	12.00	1.00	0.00	8.00	1.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGGGAT.........................................................................	25	1	11.00	1.00	1.00	1.00	3.00	5.00
........................................................................AAATATCAGCTGGTAATTCTGAG...........................................................................	23	1	11.00	11.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGC...........................................................................	23	1	11.00	8.00	0.00	0.00	1.00	2.00
........................................................................AAATATCAGCTGGTAATTCTAGG...........................................................................	23	1	11.00	11.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGAAATTCTGGG...........................................................................	23	1	11.00	7.00	1.00	1.00	0.00	2.00
........................................................................AAATATCAGATGGTAATTCTGGG...........................................................................	23	1	10.00	10.00	0.00	0.00	0.00	0.00
.........................................................................................................................CGGAATTTCAGTTGGTATCG.............................	20	1	10.00	1.00	0.00	2.00	0.00	7.00
........................................................................GAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
.........................................................................AATATCAGCTGGTAATTCTGGG...........................................................................	22	1	9.00	7.00	0.00	0.00	0.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGA............................................................................	22	1	9.00	0.00	0.00	0.00	0.00	9.00
........................................................................AAATATCAGCTGGTAAGTCTGGG...........................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGT............................................................................	22	1	9.00	0.00	2.00	2.00	2.00	3.00
........................................................................AGATATCAGCTGGTAATTCTGGG...........................................................................	23	1	8.00	6.00	0.00	0.00	2.00	0.00
....................................................CTTACACGATTCTCAAAGGT..................................................................................................	20	1	8.00	6.00	0.00	2.00	0.00	0.00
........................................................................AAATATCAGCTAGTAATTCTGGG...........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAACTCTGGG...........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAAATCTGGG...........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
........................................................................AAACATCAGCTGGTAATTCTGGG...........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
.......................................................................CAAATATCAGCTGGTAATTCTGGG...........................................................................	24	1	7.00	7.00	0.00	0.00	0.00	0.00
........................................................................AAATATTAGCTGGTAATTCTGGG...........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
........................................................................TAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
.......................................................................TAAATATCAGCTGGTAATTCTGGG...........................................................................	24	1	7.00	5.00	0.00	1.00	0.00	1.00
........................................................................AAATATCAGCCGGTAATTCTGGG...........................................................................	23	1	7.00	6.00	0.00	0.00	0.00	1.00
...........................................................................TATCAGCTGGTAATTCTGGGAGCT.......................................................................	24	1	6.00	1.00	0.00	0.00	0.00	5.00
........................................................................AAATATCAGCTGGTAATTCTTTG...........................................................................	23	1	6.00	5.00	1.00	0.00	0.00	0.00
........................................................................AAATGTCAGCTGGTAATTCTGGG...........................................................................	23	1	6.00	6.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAGTTCTGGG...........................................................................	23	1	6.00	6.00	0.00	0.00	0.00	0.00
......................................................TACACGATTCTCAAAGGT..................................................................................................	18	1	6.00	5.00	0.00	0.00	0.00	1.00
...........................................................................TATCAGCTGGTAATTCTGGGAGC........................................................................	23	1	6.00	4.00	0.00	0.00	0.00	2.00
........................................................................AAGTATCAGCTGGTAATTCTGGG...........................................................................	23	1	6.00	5.00	0.00	0.00	0.00	1.00
........................................................................AAATAGCAGCTGGTAATTCTGGG...........................................................................	23	1	5.00	4.00	0.00	0.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCAGGG...........................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
........................................................................AAATACCAGCTGGTAATTCTGGG...........................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
........................................................................AAATATCGGCTGGTAATTCTGGG...........................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTC...............................................................................	19	1	5.00	0.00	0.00	0.00	0.00	5.00
........................................................................CAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
........................................................................AAATATCCGCTGGTAATTCTGGG...........................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
...........................................................................TATCAGCTGGTAATTCTGGG...........................................................................	20	1	5.00	5.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGGT..........................................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGCTAATTCTGGG...........................................................................	23	1	4.00	2.00	0.00	0.00	0.00	2.00
.........................................................................AATATCAGCTGGTAATTCTGGGA..........................................................................	23	1	4.00	1.00	0.00	1.00	1.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGTGT..........................................................................	24	1	4.00	1.00	1.00	0.00	2.00	0.00
........................................................................AAATATCATCTGGTAATTCTGGG...........................................................................	23	1	4.00	3.00	0.00	0.00	0.00	1.00
........................................................................AAATATCAGTTGGTAATTCTGGG...........................................................................	23	1	4.00	3.00	0.00	0.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTGTGGG...........................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATCCTGGG...........................................................................	23	1	4.00	3.00	0.00	1.00	0.00	0.00
........................................................................AAATATCAGCTGATAATTCTGGG...........................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................AAATATCTGCTGGTAATTCTGGG...........................................................................	23	1	4.00	3.00	0.00	0.00	1.00	0.00
........................................................................AAATATCGGCTGGTAATTCTTGG...........................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGT...........................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTAGGT..........................................................................	24	1	4.00	3.00	0.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCGG.............................................................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
........................................................................AAATATCAGCTGGTAATTCTGTGA..........................................................................	24	1	4.00	1.00	1.00	0.00	2.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGTC...........................................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
...........................................................................TATCAGCTGGTAATTCTG.............................................................................	18	1	3.00	1.00	0.00	0.00	0.00	2.00
........................................................................AAATATGAGCTGGTAATTCTGGG...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCGGGG...........................................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTT.............................................................................	21	1	3.00	0.00	1.00	2.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGTT...........................................................................	23	1	3.00	1.00	0.00	0.00	0.00	2.00
........................................................................AAATATCAGCTGGTAATTCTTCG...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGGGT..........................................................................	24	1	3.00	1.00	0.00	1.00	1.00	0.00
............................................................................ATCAGCTGGTAATTCTGGGA..........................................................................	20	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................AAATAGCAGCTGGCAATTCTGGG...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGGA..........................................................................	24	1	3.00	1.00	2.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGAC...........................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
........................................................................CCATATCAGCTGGTAATTCTGGG...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGTTAATTCTGGG...........................................................................	23	1	3.00	1.00	0.00	0.00	0.00	2.00
..........................................................................ATATCAGCTGGTAATTCTG.............................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00

droEre2

AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	4330.00	2564.00	74.00	0.00	1692.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	1	791.00	22.00	31.00	0.00	738.00
........................................................................AAATATCAGCTGGTAATTCTTGG...........................................................................	23	1	397.00	362.00	1.00	0.00	34.00
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	1	371.00	47.00	8.00	0.00	316.00
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	279.00	102.00	11.00	0.00	166.00
........................................................................AAATATCAGCTGGTAATTCTGTG...........................................................................	23	1	267.00	251.00	1.00	0.00	15.00
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	242.00	78.00	8.00	0.00	156.00
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	1	146.00	32.00	7.00	0.00	107.00
........................................................................AAATATCAGCTGGTAATTCTGGT...........................................................................	23	1	113.00	76.00	4.00	0.00	33.00
........................................................................AAATATCAGCTGGTAATTCTTTG...........................................................................	23	1	54.00	54.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGT...........................................................................	23	1	48.00	46.00	1.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	1	45.00	5.00	2.00	0.00	38.00
.....................................................TCACACGATTCTCAAAGGT..................................................................................................	19	1	36.00	13.00	1.00	0.00	22.00
........................................................................AAATATCAGCTGGTAATT................................................................................	18	1	34.00	2.00	0.00	0.00	32.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	1	34.00	30.00	0.00	0.00	4.00
........................................................................AAATATCAGCTGGTAATTCTGT............................................................................	22	1	30.00	1.00	2.00	0.00	27.00
........................................................................AAATATCAGCTGGTAATTCTCGG...........................................................................	23	1	28.00	26.00	1.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGGC...........................................................................	23	1	27.00	5.00	1.00	0.00	21.00
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	1	26.00	0.00	1.00	0.00	25.00
........................................................................AAATATCATCTGGTAATTCTGGG...........................................................................	23	1	24.00	11.00	0.00	0.00	13.00
..........................................................................ATATCAGCTGGTAATTCTGGG...........................................................................	21	1	22.00	20.00	1.00	0.00	1.00
........................................................................AAATATCAGCTGGCAATTCTGGG...........................................................................	23	1	22.00	19.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGTAATTCTGCG...........................................................................	23	1	21.00	20.00	0.00	0.00	1.00
........................................................................AAATATCAGCTTGTAATTCTGGG...........................................................................	23	1	21.00	11.00	0.00	0.00	10.00
........................................................................AAATATCAGCTGGGAATTCTGGG...........................................................................	23	1	18.00	13.00	2.00	0.00	3.00
........................................................................AAATATCAGCTGTTAATTCTGGG...........................................................................	23	1	16.00	11.00	0.00	0.00	5.00
........................................................................AAATATCAGCTGGTAATTCTTGGT..........................................................................	24	1	15.00	10.00	2.00	0.00	3.00
.........................................................................AATATCAGCTGGTAATTCTGGG...........................................................................	22	1	13.00	6.00	0.00	0.00	7.00
........................................................................AAATATCAGCTGGTAATTCTAGG...........................................................................	23	1	12.00	11.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTT.............................................................................	21	1	11.00	1.00	0.00	0.00	10.00
........................................................................AAATATCAGCTGGTAATTCTGTT...........................................................................	23	1	11.00	11.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGGA..........................................................................	24	1	11.00	7.00	0.00	0.00	4.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGAC...........................	22	1	11.00	2.00	0.00	0.00	9.00
........................................................................AAATATCAGCTGGTCATTCTGGG...........................................................................	23	1	11.00	10.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGAG...........................................................................	23	1	10.00	7.00	0.00	0.00	3.00
........................................................................AAATATCAGCTTGTAATTCTTGG...........................................................................	23	1	9.00	8.00	1.00	0.00	0.00
........................................................................AAATATCACCTGGTAATTCTGGG...........................................................................	23	1	9.00	4.00	0.00	0.00	5.00
.......................................................................TAAATATCAGCTGGTAATTCT..............................................................................	21	1	9.00	0.00	0.00	0.00	9.00
........................................................................AAATATCAGCTGGTAATTCTGGGAA.........................................................................	25	1	9.00	0.00	1.00	0.00	8.00
........................................................................AAATATCAGCTGGTAATCCTGGG...........................................................................	23	1	9.00	4.00	0.00	0.00	5.00
........................................................................AAATATCAGCCGGTAATTCTGGG...........................................................................	23	1	9.00	3.00	0.00	0.00	6.00
........................................................................AAATATCAGCTGTTAATTCTGTG...........................................................................	23	1	8.00	8.00	0.00	0.00	0.00
........................................................................AGATATCAGCTGGTAATTCTGGG...........................................................................	23	1	8.00	5.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGTAATTCTCTG...........................................................................	23	1	8.00	8.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGAAATTCTGGG...........................................................................	23	1	8.00	3.00	0.00	0.00	5.00
........................................................................GAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	7.00	6.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTTCG...........................................................................	23	1	7.00	7.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGTGT..........................................................................	24	1	7.00	6.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCCGGG...........................................................................	23	1	7.00	5.00	0.00	0.00	2.00
........................................................................AAATATCATCTGGTAATTCT..............................................................................	20	1	7.00	1.00	0.00	0.00	6.00
........................................................................AAATATAAGCTGGTAATTCTGGG...........................................................................	23	1	7.00	1.00	0.00	0.00	6.00
..................................................................................TGGTAATTCTxAGAGCTAA.....................................................................	18	1	6.00	6.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTGATTCTGGG...........................................................................	23	1	6.00	5.00	0.00	0.00	1.00
........................................................................AAATATCAGATGGTAATTCTGGG...........................................................................	23	1	6.00	0.00	0.00	0.00	6.00
........................................................................AAATATCAGCTGGCAATTCTGGGT..........................................................................	24	1	6.00	3.00	0.00	0.00	3.00
...........................................................................TATCAGCTGGTAATTCTGGG...........................................................................	20	1	6.00	4.00	0.00	0.00	2.00
........................................................................AAATATCATCTGGTAATTCTGTG...........................................................................	23	1	6.00	5.00	1.00	0.00	0.00
.......................................................................TAAATATCAGCTGGTAATTCTGGG...........................................................................	24	1	6.00	4.00	0.00	0.00	2.00
........................................................................AAATAGCAGCTGGTAATTCTGGG...........................................................................	23	1	5.00	5.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTAT..............................................................................	20	1	5.00	0.00	0.00	0.00	5.00
........................................................................AAATGTCAGCTGGTAATTCTGGG...........................................................................	23	1	5.00	2.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGTACTTCTGGG...........................................................................	23	1	5.00	4.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGTTAATTCTTGG...........................................................................	23	1	5.00	5.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGCAATTCTTGG...........................................................................	23	1	5.00	4.00	0.00	0.00	1.00
........................................................................AACTATCAGCTGGTAATTCTGGG...........................................................................	23	1	5.00	2.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGTAATTCTGGTA..........................................................................	24	1	5.00	5.00	0.00	0.00	0.00
........................................................................AAGTATCAGCTGGTAATTCTGGG...........................................................................	23	1	5.00	3.00	0.00	0.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGTGA..........................................................................	24	1	5.00	4.00	1.00	0.00	0.00
........................................................................AAATATCAGATGGTAATTCTGGGT..........................................................................	24	1	4.00	0.00	0.00	0.00	4.00
........................................................................AAATATCAGCTAGTAATTCTGGG...........................................................................	23	1	4.00	3.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATGCTGGG...........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
........................................................................AAATATCAGCTCGTAATTCTGGG...........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTG............................................................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................................AAATATCAGATGGTAATTCTG.............................................................................	21	1	4.00	0.00	0.00	0.00	4.00
........................................................................AAATATCAGCTGGTAACTCTGGG...........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTATGGG...........................................................................	23	1	4.00	1.00	0.00	0.00	3.00
..........................................................................ATATCAGCTGGTAATTCT..............................................................................	18	1	4.00	1.00	0.00	0.00	3.00
.......................................................................CAAATATCAGCTGGTAATTCTGGG...........................................................................	24	1	4.00	2.00	0.00	0.00	2.00
........................................................................AAATATCAGCTGGTAATTT...............................................................................	19	1	4.00	0.00	0.00	0.00	4.00
........................................................................AAATATTAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	3.00	0.00	0.00	1.00
....................................................CTCACACGATTCTCAAAGGT..................................................................................................	20	1	4.00	3.00	0.00	0.00	1.00
........................................................................AAATCTCAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	1.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGGAATTCTTGG...........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
........................................................................ACATATCAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	2.00	0.00	0.00	2.00
........................................................................AAATATCAGCTTGTAATTCTG.............................................................................	21	1	4.00	0.00	0.00	0.00	4.00
...........................................................................TATCAGCTGGTAATTCTGGGAGC........................................................................	23	1	4.00	2.00	0.00	0.00	2.00
........................................................................AAATATCAGCTGATAATTCTGGG...........................................................................	23	1	4.00	3.00	0.00	0.00	1.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGA............................	21	1	4.00	1.00	0.00	0.00	3.00
........................................................................AAAGATCAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	3.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGGTT..........................................................................	24	1	4.00	2.00	1.00	0.00	1.00
........................................................................AAATATCAGCTGCTAATTCTTGG...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................................AAATATCAACTGGTAATTCTGGG...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTCATTCTGTG...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................................AAATATCAGCTTTTAATTCTGGG...........................................................................	23	1	3.00	2.00	1.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGAT.........................................................................	25	1	3.00	0.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGGAATTCTGTG...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................................AAATATCACCTGGTAATTCTTGG...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCCTGG...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................................AAGTATCAGCTGGTAATTCT..............................................................................	20	1	3.00	0.00	1.00	0.00	2.00
........................................................................AAATATCAGCTTGTAATTCT..............................................................................	20	1	3.00	0.00	0.00	0.00	3.00

droEug1

AG---AGAA-AAG----------T---------------GT-C------CACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAAA

Size

Hit Count

Total Norm

droBia1

AG---AGAA-AAG----------T---------------GC-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--

Size

Hit Count

Total Norm

droTak1

AG---AGAA-AAG----------T---------------GT-C------CACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCAAA

Size

Hit Count

Total Norm

droEle1

GG---AGAA-AAG----------T---------------GT-C-------ACATCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGTCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCAA-

Size

Hit Count

Total Norm

droRho1

GG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--

Size

Hit Count

Total Norm

droFic1

AG---AGAA-AAG----------T---------------GT-C-------ACCTCACAGGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--

Size

Hit Count

Total Norm

droKik1

AGCAAAGAACCAG----------T---------------GT-CA----CCTCCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCGTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCAC----

Size

Hit Count

Total Norm

droAna3

GT---GTTA-CAG----------T---------------GTTCA----CCACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTGATTA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTCGAATTGCATTTTATCACCAA-	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	798.00	152.00	339.00	32.00	275.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	1	523.00	74.00	350.00	78.00	21.00
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	1	237.00	30.00	131.00	15.00	61.00
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	117.00	53.00	22.00	27.00	15.00
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	1	106.00	9.00	50.00	15.00	32.00
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	97.00	62.00	16.00	6.00	13.00
........................................................................AAATATCAGCTGGTAATTCTTGG...........................................................................	23	1	53.00	1.00	3.00	1.00	48.00
........................................................................AAATATCAGCTGGTAATTCTGGT...........................................................................	23	1	29.00	6.00	11.00	6.00	6.00
........................................................................AAATATCAGCTGGTAATTCTGTG...........................................................................	23	1	28.00	0.00	1.00	2.00	25.00
........................................................................AAATATCAGCTGGTAATTCTGT............................................................................	22	1	26.00	10.00	11.00	3.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	1	21.00	1.00	10.00	0.00	10.00
...............................................................................................AGCTATGCCTGATTA--TGAAACACT.................................................	24	1	12.00	0.00	11.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATT................................................................................	18	1	11.00	8.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTT.............................................................................	21	1	11.00	3.00	3.00	0.00	5.00
..........................................................................ATATCAGCTGGTAATTCTGGG...........................................................................	21	1	10.00	3.00	1.00	0.00	6.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGAC...........................	22	1	9.00	7.00	2.00	0.00	0.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	1	9.00	1.00	0.00	0.00	8.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGA............................	21	1	9.00	9.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGTT.........................................................................	25	1	6.00	3.00	2.00	1.00	0.00
.........................................................................AATATCAGCTGGTAATTCTGGG...........................................................................	22	1	6.00	2.00	4.00	0.00	0.00
........................................................................AAATATCATCTGGTAATTCTGGG...........................................................................	23	1	6.00	1.00	4.00	0.00	1.00
........................................................................AAATATCAGATGGTAATTCT..............................................................................	20	1	6.00	2.00	4.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGCG...........................................................................	23	1	6.00	0.00	0.00	0.00	6.00
.....................................................TCACCTGATTCTTAAAGGT..................................................................................................	19	1	6.00	0.00	2.00	2.00	2.00
........................................................................AAATATCATCTGGTAATTCTGG............................................................................	22	1	5.00	0.00	4.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTCGG...........................................................................	23	1	5.00	2.00	1.00	0.00	2.00
........................................................................AAATATCAGCTGGTAATTCTAGG...........................................................................	23	1	5.00	2.00	3.00	0.00	0.00
........................................................................AAATATCATCTGGTAATTCT..............................................................................	20	1	5.00	0.00	5.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	1	5.00	0.00	4.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTG............................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.........................................................................................................................CGGAATTTCAGTTGGTATCG.............................	20	1	5.00	4.00	1.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGGA..........................................................................	24	1	5.00	1.00	0.00	0.00	4.00
........................................................................AAATATCAGCTGGTAATTCTTGT...........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................................AGATATCAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	0.00	2.00	0.00	2.00
........................................................................AAATATCAGATGGTAATTCTGGG...........................................................................	23	1	4.00	0.00	3.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTTTG...........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................................AAATATCAGCTGGGAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	1.00	2.00
........................................................................AAATATCAGCTGGTCATTCT..............................................................................	20	1	3.00	0.00	0.00	3.00	0.00
........................................................................AAATATCAGCTGGTAATCCTGGG...........................................................................	23	1	3.00	0.00	1.00	0.00	2.00
........................................................................AAATATCAGCTTGTAATTCTGGG...........................................................................	23	1	3.00	1.00	1.00	0.00	1.00
........................................................................AAATATCAGCTGGTCATTCTGGG...........................................................................	23	1	3.00	0.00	1.00	0.00	2.00
........................................................................AAATATCAGCTGCTAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	1.00	2.00
........................................................................AAATATCAGCTGGTAATTATG.............................................................................	21	1	3.00	0.00	2.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTTGGT..........................................................................	24	1	3.00	0.00	2.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGGGAA.........................................................................	25	1	3.00	3.00	0.00	0.00	0.00
...........................................................................TATCAGCTGGTAATTCTGGG...........................................................................	20	1	3.00	2.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGGGAT.........................................................................	25	1	3.00	1.00	0.00	2.00	0.00
........................................................................AAATATCAGCTAGTAATTCT..............................................................................	20	1	3.00	0.00	2.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTT...............................................................................	19	1	3.00	1.00	1.00	1.00	0.00

droBip1

A---------AAG----------T---------------GTTCA----CCACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTCTGAATTGCATTTTATCACC---

Size

Hit Count

Total Norm

dp4

AG---AGAA--AG----------C------------GACGT-CACGATTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	3884.00	138.00	3601.00	89.00	56.00
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	1	471.00	54.00	265.00	12.00	140.00
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	302.00	80.00	183.00	27.00	12.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	1	243.00	114.00	63.00	63.00	3.00
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	1	207.00	23.00	149.00	10.00	25.00
...................................................CCTCA--CGATTCTCAAAGGT..................................................................................................	19	1	114.00	1.00	113.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	113.00	38.00	54.00	15.00	6.00
........................................................................AAATATCAGCTGGTAATTCTTGG...........................................................................	23	1	91.00	0.00	89.00	2.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGTG...........................................................................	23	1	50.00	0.00	48.00	2.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGT...........................................................................	23	1	36.00	7.00	21.00	6.00	2.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	1	29.00	1.00	28.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	1	24.00	2.00	14.00	5.00	3.00
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	1	23.00	0.00	5.00	3.00	15.00
........................................................................AAATATCAGCTGGTAATTCTGCG...........................................................................	23	1	21.00	0.00	20.00	1.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGGG...........................................................................	23	1	19.00	0.00	16.00	0.00	3.00
........................................................................AAATATCAGCTGGTCATTCTGGG...........................................................................	23	1	17.00	0.00	17.00	0.00	0.00
........................................................................AAATATCAGCTGGCAATTCTGGG...........................................................................	23	1	17.00	0.00	17.00	0.00	0.00
.........................................................................AATATCAGCTGGTAATTCTGGG...........................................................................	22	1	16.00	0.00	14.00	1.00	1.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGAC...........................	22	1	15.00	10.00	4.00	1.00	0.00
........................................................................AAATATCAGCTGGTGATTCTGGG...........................................................................	23	1	13.00	0.00	13.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGT............................................................................	22	1	13.00	3.00	4.00	2.00	4.00
........................................................................AAATATCAGCTGGTTATTCTGGG...........................................................................	23	1	12.00	0.00	12.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGTT.........................................................................	25	1	11.00	3.00	2.00	0.00	6.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGA............................	21	1	10.00	7.00	3.00	0.00	0.00
........................................................................AAATATAAGCTGGTAATTCTGGG...........................................................................	23	1	10.00	0.00	10.00	0.00	0.00
........................................................................AAATATCAGCTAGTAATTCTGGG...........................................................................	23	1	10.00	0.00	10.00	0.00	0.00
........................................................................AAATAGCAGCTGGTAATTCTGGG...........................................................................	23	1	9.00	0.00	9.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATT................................................................................	18	1	8.00	2.00	3.00	3.00	0.00
........................................................................AAATATCAGATGGTAATTCTGGG...........................................................................	23	1	8.00	0.00	8.00	0.00	0.00
........................................................................AAATATCAGCTGGTAAGTCTGGG...........................................................................	23	1	8.00	0.00	8.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATGCTGGG...........................................................................	23	1	8.00	0.00	8.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTATGGG...........................................................................	23	1	7.00	0.00	7.00	0.00	0.00
........................................................................AAATATCAGCTGGTACTTCTGGG...........................................................................	23	1	7.00	0.00	7.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTTTGGG...........................................................................	23	1	7.00	0.00	7.00	0.00	0.00
........................................................................AGATATCAGCTGGTAATTCTGGG...........................................................................	23	1	6.00	0.00	6.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCTG.............................................................................	21	1	6.00	0.00	5.00	0.00	1.00
........................................................................AAATGTCAGCTGGTAATTCTGGG...........................................................................	23	1	6.00	0.00	5.00	1.00	0.00
...........................................................................TATCAGCTGGTAATTCTGGG...........................................................................	20	1	6.00	0.00	6.00	0.00	0.00
........................................................................AAATATCAGCTGGTCATTCTTGG...........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGC..........................................................................	24	1	5.00	0.00	3.00	1.00	1.00
........................................................................AAATATCAGCTGGTAATCCTGGG...........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................AAATATCAGTTGGTAATTCTGGG...........................................................................	23	1	5.00	0.00	4.00	1.00	0.00
..........................................................................ATATCAGCTGGTAATTCTGGG...........................................................................	21	1	5.00	0.00	5.00	0.00	0.00
........................................................................ACATATCAGCTGGTAATTCTGGG...........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................AAATATCCGCTGGTAATTCTGGG...........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTTG...........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGAG...........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTAGG...........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................................AAATATCAGCTGGCAATTCT..............................................................................	20	1	5.00	3.00	1.00	1.00	0.00
........................................................................AAATATCAGCTGGTAGTTCTGGG...........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCCGGG...........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAATATCAGCTGGTATTTCTGGG...........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAATCTCAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	0.00	3.00	1.00	0.00
........................................................................AAATATCAGCTTGTAATTCTGGG...........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAATATCAGCTGGTCATTCTG.............................................................................	21	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGCT...........................................................................	23	1	4.00	0.00	3.00	1.00	0.00
........................................................................AAATATCAGCTGGTGATTCTGTG...........................................................................	23	1	4.00	0.00	3.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTCGG...........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGC...........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAATATCTGCTGGTAATTCTGGG...........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAATATTAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTT.............................................................................	21	1	4.00	2.00	2.00	0.00	0.00
.........................................................................AATATCAGCTGGTAATTCTGGGA..........................................................................	23	1	4.00	1.00	2.00	0.00	1.00
........................................................................AAATATCAGCTGATAATTCTGGG...........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAACATCAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................................AAATATCAGCTGGAAATTCTGGG...........................................................................	23	1	3.00	0.00	2.00	1.00	0.00
........................................................................AAATATCAGCAGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGGGT..........................................................................	24	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTG............................................................................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTCGTAATTCTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATAGCAGCTGGCAATTCTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGATGGTAATTCTG.............................................................................	21	1	3.00	0.00	3.00	0.00	0.00
........................................................................GAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	3.00	1.00	2.00	0.00	0.00
........................................................................AAATAACAGCTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTCTG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAGTATCAGCTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
..................................................................................TGGTAATTCTxAGAGCTAA.....................................................................	18	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAAGATCAGCTGGTTATTCTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................ATATATCAGCTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTTGTAATTCTGTG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................................CCTCA--CGATTCTCACAGGT..................................................................................................	19	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATTTCAGCTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTCCG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGTT...........................................................................	23	1	3.00	2.00	1.00	0.00	0.00
.......................................................................CAAATATCAGCTGGTAATTCTGGG...........................................................................	24	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCGGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTGTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................................AAATATTAGCTGGTAATTCTG.............................................................................	21	1	3.00	0.00	2.00	1.00	0.00

droPer1

AG---AGCG-AA-CGAGAGAGAGTGCCAGAGAAAGCGACGT-CACGATTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	1869.00	41.00	818.00	59.00	51.00	900.00
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	1	845.00	17.00	75.00	9.00	15.00	729.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	1	234.00	56.00	22.00	48.00	108.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	1	203.00	8.00	33.00	10.00	9.00	143.00
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	178.00	23.00	27.00	15.00	19.00	94.00
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	1	155.00	1.00	0.00	2.00	1.00	151.00
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	124.00	28.00	19.00	7.00	14.00	56.00
...................................................CCTCA--CGATTCTCAAAGGT..................................................................................................	19	1	66.00	1.00	56.00	1.00	7.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	1	59.00	1.00	5.00	0.00	2.00	51.00
........................................................................AAATATCAGCTGGTAATTCTGGGC..........................................................................	24	1	34.00	0.00	1.00	0.00	0.00	33.00
........................................................................AAATATCAGCTGGTAATTCTGGT...........................................................................	23	1	33.00	2.00	8.00	4.00	0.00	19.00
........................................................................AAATATCAGCTGGTAATTCTGGGG..........................................................................	24	1	21.00	0.00	1.00	0.00	0.00	20.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGAC...........................	22	1	16.00	9.00	2.00	2.00	3.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGG...........................................................................	23	1	16.00	0.00	15.00	0.00	1.00	0.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	1	15.00	0.00	11.00	0.00	0.00	4.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGA............................	21	1	14.00	14.00	0.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGT............................................................................	22	1	14.00	3.00	2.00	2.00	2.00	5.00
........................................................................AAATATCAGCTGGTAATTCTGA............................................................................	22	1	13.00	0.00	1.00	0.00	0.00	12.00
.........................................................................................................................CGGAATTTCAGTTGGTATCG.............................	20	1	13.00	2.00	1.00	0.00	1.00	9.00
........................................................................AAATATCAGCTGTTAATTCTGGG...........................................................................	23	1	11.00	0.00	0.00	0.00	0.00	11.00
........................................................................AAATATCAGCTGGGAATTCTGGG...........................................................................	23	1	11.00	1.00	2.00	0.00	1.00	7.00
........................................................................AAATATCAGCTGGGAATTCTG.............................................................................	21	1	10.00	0.00	0.00	0.00	0.00	10.00
...........................................................................TATCAGCTGGTAATTCTG.............................................................................	18	1	9.00	0.00	0.00	1.00	0.00	8.00
...............................................................................................AGCTAAGC-AAGATA--TGAAACACT.................................................	23	1	9.00	0.00	2.00	0.00	1.00	6.00
...........................................................................TATCAGCTGGTAATTCTGGG...........................................................................	20	1	7.00	0.00	6.00	1.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGC...........................................................................	23	1	7.00	0.00	1.00	0.00	0.00	6.00
........................................................................AAATATCAGCTGTTAATTC...............................................................................	19	1	7.00	0.00	0.00	0.00	0.00	7.00
..........................................................................ATATCAGCTGGTAATTCTG.............................................................................	19	1	6.00	0.00	0.00	0.00	0.00	6.00
..................................................................................TGGTAATTCTxAGAGCTAA.....................................................................	18	1	6.00	0.00	1.00	0.00	5.00	0.00
.........................................................................AATATCAGCTGGTAATTCTGGG...........................................................................	22	1	5.00	1.00	3.00	0.00	0.00	1.00
........................................................................AAATATCAGCTGTTAATTCTGGGT..........................................................................	24	1	5.00	0.00	0.00	0.00	1.00	4.00
........................................................................AAATATCAGCTGGTAATTCTGGGTT.........................................................................	25	1	5.00	1.00	1.00	1.00	0.00	2.00
........................................................................AAATATCAGCTGGTAATT................................................................................	18	1	5.00	2.00	2.00	1.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGTG...........................................................................	23	1	5.00	0.00	5.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTCATTCTGGG...........................................................................	23	1	4.00	0.00	3.00	0.00	1.00	0.00
.........................................................................AATATCAGCTGGTAATTCTGGGA..........................................................................	23	1	4.00	0.00	0.00	1.00	1.00	2.00
........................................................................AAATATCAGCTGGGAATTC...............................................................................	19	1	4.00	0.00	0.00	0.00	0.00	4.00
........................................................................AAATATCAGCTGGTAGTTCTGGG...........................................................................	23	1	4.00	2.00	2.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGTTAATTCTGG............................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
..........................................................................ATATCAGCTGGTAATTCTGGG...........................................................................	21	1	4.00	0.00	1.00	0.00	0.00	3.00
........................................................................AAATATCAACTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGGGATTCTGGG...........................................................................	23	1	3.00	0.00	2.00	0.00	1.00	0.00
........................................................................AAATATCAGCTGGAAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGTAATTATGGG...........................................................................	23	1	3.00	0.00	2.00	1.00	0.00	0.00
........................................................................AAATATCAGCCGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	1.00	0.00	0.00	2.00
........................................................................AAATATCAGCTGGTCATTCTG.............................................................................	21	1	3.00	0.00	2.00	0.00	1.00	0.00
........................................................................AAATATCAGCTGATAATTCTG.............................................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
........................................................................AGATATCAGCTGGTAATTCTG.............................................................................	21	1	3.00	0.00	1.00	0.00	0.00	2.00
........................................................................AAATATCATCTGGTAATTCTG.............................................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGTTATTCTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCT..............................................................................	20	1	3.00	1.00	1.00	0.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTCGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGCAATTCTGGG...........................................................................	23	1	3.00	0.00	1.00	0.00	2.00	0.00
........................................................................AAATATCAGCTGGTAATTCCG.............................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00

droWil1

GA----GTGCGAGTGGGA-----G---------------GG-A-------GCCTAACG-AATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAGATATTTGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAA-	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	25275.00	87.00	22101.00	1068.00	2019.00
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	1	2071.00	20.00	673.00	167.00	1211.00
....................................................CTAACG-AATTCTCAAAGGT..................................................................................................	19	1	1032.00	4.00	1005.00	6.00	17.00
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	1020.00	57.00	751.00	50.00	162.00
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	1	875.00	19.00	554.00	61.00	241.00
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	803.00	30.00	589.00	38.00	146.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	1	687.00	65.00	355.00	232.00	35.00
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	1	353.00	1.00	1.00	0.00	351.00
........................................................................AAATATCAGCTGGTAATT................................................................................	18	1	299.00	1.00	285.00	9.00	4.00
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	1	192.00	0.00	70.00	9.00	113.00
........................................................................AAATATCAGCTGGTAATTCTGGT...........................................................................	23	1	87.00	8.00	49.00	14.00	16.00
........................................................................AAATATCAGCTGGCAATTCTGGG...........................................................................	23	1	76.00	0.00	71.00	4.00	1.00
.........................................................................AATATCAGCTGGTAATTCTGGG...........................................................................	22	1	66.00	0.00	59.00	5.00	2.00
........................................................................AAATATCAGCTGGTAATTCTTGG...........................................................................	23	1	62.00	0.00	61.00	1.00	0.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGAC...........................	22	1	58.00	5.00	51.00	2.00	0.00
........................................................................AAATATCATCTGGTAATTCTGGG...........................................................................	23	1	57.00	0.00	51.00	2.00	4.00
........................................................................AAATATCAGCTGGTAATTCTGGGG..........................................................................	24	1	51.00	1.00	7.00	3.00	40.00
........................................................................AAATATCAGCTGGTAATTCTGTG...........................................................................	23	1	42.00	0.00	38.00	4.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGGG...........................................................................	23	1	42.00	0.00	13.00	5.00	24.00
........................................................................AAATATCAGCTGGTAATTCTGGGC..........................................................................	24	1	39.00	0.00	5.00	1.00	33.00
........................................................................AAATATCAGCTTGTAATTCTGGG...........................................................................	23	1	38.00	0.00	33.00	1.00	4.00
........................................................................AAATATCAGATGGTAATTCTGGG...........................................................................	23	1	38.00	0.00	36.00	2.00	0.00
........................................................................AAATATCAGCTGGTAATTATGGG...........................................................................	23	1	37.00	0.00	29.00	8.00	0.00
........................................................................AAATATCAGCTGTTAATTCTGGG...........................................................................	23	1	36.00	0.00	18.00	0.00	18.00
........................................................................AAATATCAGCCGGTAATTCTGGG...........................................................................	23	1	31.00	0.00	25.00	3.00	3.00
........................................................................AAATATCAGCTGGTAATTCTGGGAA.........................................................................	25	1	30.00	1.00	26.00	0.00	3.00
........................................................................AAATATCAGCTGGTAATTCTGGGTT.........................................................................	25	1	30.00	1.00	13.00	2.00	14.00
........................................................................AAATATCAGCTGGAAATTCTGGG...........................................................................	23	1	29.00	1.00	21.00	3.00	4.00
........................................................................AAATATCAGCTGGTAATTCCGGG...........................................................................	23	1	29.00	0.00	25.00	1.00	3.00
.....................................................TAACG-AATTCTCAAAGGT..................................................................................................	18	1	28.00	0.00	28.00	0.00	0.00
........................................................................AAATACCAGCTGGTAATTCTGGG...........................................................................	23	1	27.00	0.00	25.00	1.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGGC...........................................................................	23	1	26.00	0.00	17.00	1.00	8.00
........................................................................AAATATCAGCTGGTAATCCTGGG...........................................................................	23	1	26.00	0.00	24.00	2.00	0.00
..........................................................................ATATCAGCTGGTAATTCTGGG...........................................................................	21	1	26.00	1.00	24.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTAGG...........................................................................	23	1	25.00	0.00	25.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTCGG...........................................................................	23	1	24.00	1.00	23.00	0.00	0.00
........................................................................AAATATAAGCTGGTAATTCTGGG...........................................................................	23	1	24.00	0.00	23.00	1.00	0.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGA............................	21	1	23.00	7.00	14.00	1.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGCG...........................................................................	23	1	22.00	2.00	19.00	1.00	0.00
........................................................................ACATATCAGCTGGTAATTCTGGG...........................................................................	23	1	22.00	0.00	21.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGT............................................................................	22	1	21.00	1.00	3.00	0.00	17.00
........................................................................AAACATCAGCTGGTAATTCTGGG...........................................................................	23	1	21.00	0.00	18.00	3.00	0.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	1	21.00	1.00	19.00	1.00	0.00
........................................................................AAATATCAGCTGGTAACTCTGGG...........................................................................	23	1	20.00	0.00	16.00	4.00	0.00
........................................................................AAATATCGGCTGGTAATTCTGGG...........................................................................	23	1	20.00	1.00	19.00	0.00	0.00
...................................................CCTAACG-AATTCTCAAAGGT..................................................................................................	20	1	19.00	1.00	18.00	0.00	0.00
........................................................................GAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	19.00	0.00	14.00	2.00	3.00
........................................................................AAATATCAGCTGGTxATTCTGGG...........................................................................	22	1	19.00	0.00	18.00	1.00	0.00
........................................................................AAATATCAGCTGGGAATTCTG.............................................................................	21	1	18.00	0.00	1.00	1.00	16.00
........................................................................AAATATCAGCTGCTAATTCTGGG...........................................................................	23	1	18.00	0.00	11.00	2.00	5.00
........................................................................AAATCTCAGCTGGTAATTCTGGG...........................................................................	23	1	17.00	0.00	15.00	2.00	0.00
........................................................................AAATATCAGCTGATAATTCTGGG...........................................................................	23	1	16.00	0.00	10.00	1.00	5.00
.......................................................................TAAATATCAGCTGGTAATTCTGGG...........................................................................	24	1	16.00	0.00	11.00	2.00	3.00
........................................................................AAATATCACCTGGTAATTCTGGG...........................................................................	23	1	15.00	1.00	14.00	0.00	0.00
........................................................................AAATATCAGCTxGTAATTCTGGG...........................................................................	22	1	15.00	0.00	12.00	0.00	3.00
........................................................................AAATATCCGCTGGTAATTCTGGG...........................................................................	23	1	15.00	0.00	14.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGAG...........................................................................	23	1	15.00	0.00	12.00	3.00	0.00
........................................................................AACTATCAGCTGGTAATTCTGGG...........................................................................	23	1	14.00	0.00	14.00	0.00	0.00
........................................................................AAATATCAGCTGGTGATTCTGGG...........................................................................	23	1	14.00	0.00	14.00	0.00	0.00
.......................................................................CAAATATCAGCTGGTAATTCTGGG...........................................................................	24	1	14.00	0.00	14.00	0.00	0.00
........................................................................AAATATCAGCTCGTAATTCTGGG...........................................................................	23	1	13.00	0.00	11.00	1.00	1.00
........................................................................AAATGTCAGCTGGTAATTCTGGG...........................................................................	23	1	13.00	0.00	11.00	2.00	0.00
........................................................................AAATATCAACTGGTAATTCTGGG...........................................................................	23	1	13.00	0.00	11.00	1.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGA............................................................................	22	1	13.00	0.00	2.00	0.00	11.00
........................................................................AAAAATCAGCTGGTAATTCTGGG...........................................................................	23	1	12.00	0.00	12.00	0.00	0.00
........................................................................AAATATCAGCTAGTAATTCTGGG...........................................................................	23	1	12.00	0.00	8.00	2.00	2.00
........................................................................AGATATCAGCTGGTAATTCTGGG...........................................................................	23	1	12.00	0.00	11.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTA.............................................................................	21	1	12.00	0.00	11.00	1.00	0.00
........................................................................AAATATCAGCTGGTAGTTCTGGG...........................................................................	23	1	12.00	0.00	12.00	0.00	0.00
........................................................................AAGTATCAGCTGGTAATTCTGGG...........................................................................	23	1	12.00	0.00	12.00	0.00	0.00
........................................................................AAATATTAGCTGGTAATTCTGGG...........................................................................	23	1	11.00	0.00	10.00	1.00	0.00
..........................................................................AAATCAGCTGGTAATTCTGGG...........................................................................	21	1	11.00	1.00	10.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGAT.........................................................................	25	1	10.00	2.00	2.00	1.00	5.00
........................................................................AAATATCAGCTGGTAATTCTGGAA..........................................................................	24	1	9.00	0.00	5.00	2.00	2.00
........................................................................CAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	9.00	0.00	4.00	5.00	0.00
........................................................................AAATATCAGCTGGTACTTCTGGG...........................................................................	23	1	9.00	0.00	8.00	1.00	0.00
........................................................................AAATATCAGTTGGTAATTCTGGG...........................................................................	23	1	9.00	0.00	7.00	2.00	0.00
.........................................................................................................................CGGAATTTCAGTTGGTATCG.............................	20	1	8.00	0.00	1.00	0.00	7.00
.........................................................................AATATCAGCTGGTAATTCTGGGA..........................................................................	23	1	8.00	0.00	3.00	0.00	5.00
....................................................CTAACG-AATTCTCAAAGG...................................................................................................	18	1	7.00	0.00	7.00	0.00	0.00
.........................................................................AATATCAGCTGGTAATTCTG.............................................................................	20	1	7.00	0.00	3.00	1.00	3.00
...........................................................................TATCAGCTGGTAATTCTGGG...........................................................................	20	1	7.00	1.00	5.00	0.00	1.00
.......................................................................TAAATATCAGCTGGTAATTCTG.............................................................................	22	1	7.00	0.00	0.00	0.00	7.00
........................................................................AAATATCAGCTGGTCATTCTGGG...........................................................................	23	1	7.00	0.00	6.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTTTGGG...........................................................................	23	1	7.00	0.00	2.00	4.00	1.00
........................................................................AAATATCAGCTGTTAATTCTGG............................................................................	22	1	6.00	0.00	1.00	0.00	5.00
.......................................................................TAAATATCAGCTGGTAATTCT..............................................................................	21	1	6.00	0.00	2.00	4.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGG............................................................................	22	1	6.00	0.00	0.00	2.00	4.00
........................................................................AAATATCAGCTGTTAATTC...............................................................................	19	1	5.00	0.00	0.00	0.00	5.00
........................................................................AAATATCAGCGGGTAATTCTGGG...........................................................................	23	1	5.00	0.00	4.00	0.00	1.00
........................................................................TAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	5.00	0.00	3.00	1.00	1.00
........................................................................AAATATCAGCTGGTAATTCTT.............................................................................	21	1	5.00	0.00	2.00	2.00	1.00
........................................................................AAATATCAGCTxGTAATTCTGG............................................................................	21	1	5.00	0.00	1.00	0.00	4.00
........................................................................AAATATCAGCTGGTAATTCTGGTA..........................................................................	24	1	5.00	0.00	5.00	0.00	0.00
........................................................................AAATATCAGATGGTAATTCT..............................................................................	20	1	5.00	0.00	2.00	3.00	0.00
........................................................................AAATATCAGCTGGGAATTC...............................................................................	19	1	5.00	0.00	0.00	0.00	5.00
........................................................................AAATATCAGCTGGTAATTCTGC............................................................................	22	1	5.00	0.00	0.00	0.00	5.00
........................................................................AAATATCAGCTGGTAATTCTGGAAA.........................................................................	25	1	5.00	0.00	5.00	0.00	0.00
...........................................................................TATCAGCTGGTAATTCTGGGAGCT.......................................................................	24	1	4.00	0.00	0.00	0.00	4.00
...........................................................................AATCAGCTGGTAATTCTGGG...........................................................................	20	1	4.00	0.00	2.00	2.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGAAA........................................................................	26	1	4.00	0.00	4.00	0.00	0.00

droVir3

AC---A-----AG----A-----T---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACC---	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	2378.00	243.00	89.00	952.00	894.00	200.00
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	1	596.00	29.00	3.00	25.00	370.00	169.00
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	555.00	235.00	16.00	105.00	159.00	40.00
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	335.00	111.00	9.00	108.00	98.00	9.00
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	1	255.00	23.00	5.00	72.00	124.00	31.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	1	240.00	149.00	57.00	14.00	16.00	4.00
........................................................................AAATATCAGCTGGTAATTCTGGGC..........................................................................	24	1	168.00	2.00	0.00	3.00	160.00	3.00
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	1	161.00	2.00	1.00	2.00	109.00	47.00
........................................................................AAATATCAGCTGGTAATTCTTGG...........................................................................	23	1	98.00	0.00	3.00	95.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	1	97.00	6.00	4.00	9.00	55.00	23.00
........................................................................AAATATCAGCTGGTAATTCTGTG...........................................................................	23	1	64.00	3.00	0.00	61.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGT...........................................................................	23	1	58.00	11.00	3.00	35.00	9.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGG..........................................................................	24	1	38.00	0.00	0.00	1.00	29.00	8.00
........................................................................AAATATCAGCTGGTAATTCTGGGTT.........................................................................	25	1	34.00	3.00	0.00	3.00	26.00	2.00
........................................................................AAATATCAGCTGGTAATTCTC.............................................................................	21	1	29.00	0.00	0.00	0.00	26.00	3.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGAC...........................	22	1	22.00	10.00	0.00	12.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGGG...........................................................................	23	1	20.00	0.00	0.00	5.00	9.00	6.00
........................................................................AAATATCAGCTGGTAATTCTGGGAA.........................................................................	25	1	18.00	8.00	0.00	7.00	2.00	1.00
........................................................................AAATATCAGCTGGTAATT................................................................................	18	1	18.00	13.00	0.00	4.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGAT.........................................................................	25	1	17.00	8.00	1.00	1.00	6.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGGGTC.........................................................................	25	1	17.00	1.00	0.00	1.00	12.00	3.00
........................................................................AAATATCAGCTGGTAATTCTGT............................................................................	22	1	16.00	3.00	1.00	5.00	4.00	3.00
........................................................................AAATATCAGCTTGTAATTCTGGG...........................................................................	23	1	13.00	0.00	0.00	11.00	2.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGT...........................................................................	23	1	13.00	0.00	0.00	13.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGCC.........................................................................	25	1	13.00	0.00	0.00	0.00	13.00	0.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGA............................	21	1	11.00	6.00	0.00	5.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGA............................................................................	22	1	10.00	0.00	0.00	0.00	7.00	3.00
..........................................................................ATATCAGCTGGTAATTCTGGG...........................................................................	21	1	9.00	0.00	0.00	8.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGCG...........................................................................	23	1	9.00	1.00	2.00	6.00	0.00	0.00
........................................................................AAATATCAGCTGTTAATTCTGGG...........................................................................	23	1	9.00	0.00	0.00	2.00	5.00	2.00
........................................................................AAATATCAGCTGGTAATTCTTTG...........................................................................	23	1	9.00	0.00	0.00	9.00	0.00	0.00
.....................................................TCACCCGATTCTCAAAGGT..................................................................................................	19	1	8.00	2.00	1.00	5.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGTGT..........................................................................	24	1	8.00	2.00	0.00	6.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGAAA........................................................................	26	1	8.00	4.00	0.00	3.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGGA..........................................................................	24	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTG............................................................................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCTG.............................................................................	21	1	7.00	0.00	0.00	0.00	3.00	4.00
........................................................................AAATATCAGCTGGCAATTCTGGG...........................................................................	23	1	6.00	2.00	0.00	2.00	2.00	0.00
.........................................................................AATATCAGCTGGTAATTCTGGG...........................................................................	22	1	6.00	3.00	0.00	2.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGAA..........................................................................	24	1	6.00	1.00	0.00	1.00	2.00	2.00
.........................................................................AATATCAGCTGGTAATTCTGGGA..........................................................................	23	1	6.00	1.00	0.00	0.00	5.00	0.00
........................................................................AAATATCAGCTGGTAATTCCGGG...........................................................................	23	1	6.00	1.00	0.00	2.00	1.00	2.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	1	6.00	0.00	0.00	6.00	0.00	0.00
........................................................................AAATATCAGCTTGTAATTCTTGG...........................................................................	23	1	5.00	0.00	0.00	5.00	0.00	0.00
........................................................................AAATATCAGCTGGTCATTCTGGG...........................................................................	23	1	5.00	1.00	1.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGGGA..........................................................................	24	1	5.00	2.00	0.00	0.00	3.00	0.00
.........................................................................................................................CGGAATTTCAGTTGGTATCG.............................	20	1	5.00	2.00	0.00	0.00	1.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGTGA..........................................................................	24	1	5.00	1.00	0.00	4.00	0.00	0.00
........................................................................AAATATCAGCCGGTAATTCTGGG...........................................................................	23	1	4.00	0.00	0.00	2.00	1.00	1.00
........................................................................AAATATCAGCTGGTAATCCTGGG...........................................................................	23	1	4.00	3.00	0.00	1.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGAT..........................................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGC...........................................................................	23	1	4.00	1.00	0.00	2.00	0.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGTT...........................................................................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGGGC..........................................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
........................................................................AAATATCAGCTGGTAATTCTCGG...........................................................................	23	1	4.00	0.00	1.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGAG...........................................................................	23	1	4.00	0.00	1.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGCT...........................................................................	23	1	4.00	0.00	1.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGC...........................................................................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
....................................................CTCACCCGATTCTCAAAGGT..................................................................................................	20	1	4.00	3.00	0.00	1.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGTT..........................................................................	24	1	4.00	0.00	0.00	2.00	2.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGG............................................................................	22	1	4.00	0.00	0.00	0.00	3.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGCGA..........................................................................	24	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................AAATATCATCTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	1.00	2.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGCT.........................................................................	25	1	3.00	0.00	0.00	0.00	3.00	0.00
........................................................................AAATATCAGCTGGCAATTCTGGGA..........................................................................	24	1	3.00	0.00	0.00	2.00	1.00	0.00
.........................................................................AATATCAGCTGGTAATTCTGGGT..........................................................................	23	1	3.00	1.00	0.00	1.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTAGG...........................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTAGTAATTCTGGG...........................................................................	23	1	3.00	1.00	0.00	2.00	0.00	0.00
........................................................................AAATATCAGCTGGCAATTCT..............................................................................	20	1	3.00	2.00	1.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAAGTCTGGG...........................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................AAATATAAGCTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGGGT..........................................................................	24	1	3.00	0.00	0.00	2.00	0.00	1.00
........................................................................GAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGTA.........................................................................	25	1	3.00	0.00	1.00	0.00	2.00	0.00

droMoj3

AG---TGAACCAG----C-----T---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCC-AATA--TGAAACACTCGGAATTTCAGTTGGTATATACTTTTTTGAATTGCATTTTATCACCA--	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	8382.00	457.00	117.00	55.00	7753.00
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	618.00	357.00	38.00	25.00	198.00
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	437.00	168.00	33.00	20.00	216.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	1	329.00	201.00	71.00	39.00	18.00
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	1	200.00	57.00	11.00	3.00	129.00
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	1	184.00	23.00	9.00	6.00	146.00
........................................................................AAATATCAGCTGGTAATTCTTGG...........................................................................	23	1	114.00	1.00	2.00	5.00	106.00
........................................................................AAATATCAGCTGGTAATTCTGTG...........................................................................	23	1	86.00	1.00	3.00	3.00	79.00
........................................................................AAATATCAGCTGGTCATTCTGGG...........................................................................	23	1	58.00	0.00	0.00	3.00	55.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	1	58.00	2.00	0.00	0.00	56.00
........................................................................AAATATCAGCTGGTAATT................................................................................	18	1	40.00	21.00	2.00	0.00	17.00
........................................................................AAATATCAGCTGGCAATTCTGGG...........................................................................	23	1	39.00	1.00	2.00	1.00	35.00
........................................................................AAATATCAGCTGGTAATTCTGGT...........................................................................	23	1	38.00	13.00	4.00	5.00	16.00
.....................................................TCACCCGATTCTCAAAGGT..................................................................................................	19	1	34.00	6.00	1.00	1.00	26.00
........................................................................AAATATCAGCTGGGAATTCTGGG...........................................................................	23	1	33.00	0.00	0.00	0.00	33.00
........................................................................AAATATCAGCTGGTGATTCTGGG...........................................................................	23	1	25.00	1.00	0.00	0.00	24.00
.........................................................................AATATCAGCTGGTAATTCTGGGA..........................................................................	23	1	25.00	24.00	0.00	0.00	1.00
........................................................................AAATATCAGATGGTAATTCTGGG...........................................................................	23	1	24.00	0.00	0.00	0.00	24.00
........................................................................AAATATCAGCTGGTAATTCTAGG...........................................................................	23	1	19.00	0.00	0.00	0.00	19.00
........................................................................AAATATCAGCTGGTAATTCTGGGAA.........................................................................	25	1	18.00	15.00	0.00	1.00	2.00
........................................................................AAATATCAGCTGGTAATTCCGGG...........................................................................	23	1	17.00	1.00	1.00	0.00	15.00
........................................................................AAATATCAGCTGGTAATTCTGT............................................................................	22	1	17.00	10.00	2.00	4.00	1.00
........................................................................AAATATCAGCTGGTTATTCTGGG...........................................................................	23	1	16.00	0.00	0.00	2.00	14.00
........................................................................AGATATCAGCTGGTAATTCTGGG...........................................................................	23	1	15.00	1.00	1.00	1.00	12.00
........................................................................AAACATCAGCTGGTAATTCTGGG...........................................................................	23	1	15.00	0.00	1.00	0.00	14.00
........................................................................GAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	14.00	0.00	4.00	0.00	10.00
........................................................................AAATATCAGCTGGTAATTATGGG...........................................................................	23	1	14.00	0.00	1.00	0.00	13.00
........................................................................AAATATCAGCTGGTAATTCTGCG...........................................................................	23	1	13.00	0.00	1.00	1.00	11.00
........................................................................AAATATAAGCTGGTAATTCTGGG...........................................................................	23	1	13.00	0.00	0.00	0.00	13.00
........................................................................AAATATCAGCTGGTAATTCTCGG...........................................................................	23	1	13.00	2.00	1.00	0.00	10.00
........................................................................AAATATCAGCTGGTACTTCTGGG...........................................................................	23	1	13.00	0.00	0.00	2.00	11.00
.......................................................................CAAATATCAGCTGGTAATTCTGGG...........................................................................	24	1	13.00	2.00	0.00	0.00	11.00
........................................................................AAATGTCAGCTGGTAATTCTGGG...........................................................................	23	1	11.00	0.00	0.00	0.00	11.00
.........................................................................................................................CGGAATTTCAGTTGGTATATAC...........................	22	1	11.00	8.00	2.00	1.00	0.00
........................................................................AAATATCAGCTGGTAAGTCTGGG...........................................................................	23	1	11.00	0.00	0.00	0.00	11.00
........................................................................AAATATCAGCTAGTAATTCTGGG...........................................................................	23	1	11.00	0.00	0.00	0.00	11.00
........................................................................AAATAGCAGCTGGTAATTCTGGG...........................................................................	23	1	10.00	0.00	0.00	0.00	10.00
........................................................................AAATATCAGCTGGTAATTCTGGGTT.........................................................................	25	1	10.00	7.00	0.00	1.00	2.00
........................................................................AAATATCAGCTGGTAATTCTGGGAT.........................................................................	25	1	10.00	8.00	2.00	0.00	0.00
..........................................................................ATATCAGCTGGTAATTCTGGG...........................................................................	21	1	10.00	4.00	1.00	0.00	5.00
........................................................................AAATATCAGCTGGTAGTTCTGGG...........................................................................	23	1	9.00	1.00	0.00	0.00	8.00
........................................................................AAATATCAGCTGGTAACTCTGGG...........................................................................	23	1	9.00	0.00	0.00	0.00	9.00
........................................................................ACATATCAGCTGGTAATTCTGGG...........................................................................	23	1	9.00	0.00	1.00	0.00	8.00
........................................................................AAATATCAGCTGGTAATTCTGAG...........................................................................	23	1	9.00	0.00	0.00	0.00	9.00
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	1	9.00	1.00	2.00	0.00	6.00
........................................................................AAATATCAGCTGGAAATTCTGGG...........................................................................	23	1	9.00	0.00	1.00	0.00	8.00
........................................................................AAATATCAGCTGGTAATTCTGGGC..........................................................................	24	1	9.00	0.00	1.00	1.00	7.00
........................................................................AAGTATCAGCTGGTAATTCTGGG...........................................................................	23	1	9.00	0.00	0.00	0.00	9.00
........................................................................AAATATCGGCTGGTAATTCTGGG...........................................................................	23	1	8.00	0.00	0.00	0.00	8.00
........................................................................AAATATCAGCTGGTCATTCTTGG...........................................................................	23	1	8.00	0.00	0.00	1.00	7.00
........................................................................AAATATCCGCTGGTAATTCTGGG...........................................................................	23	1	8.00	1.00	1.00	0.00	6.00
........................................................................AAATACCAGCTGGTAATTCTGGG...........................................................................	23	1	8.00	0.00	1.00	0.00	7.00
........................................................................AAATATCAGCTGGGAATTCTTGG...........................................................................	23	1	7.00	0.00	0.00	0.00	7.00
.........................................................................AATATCAGCTGGTAATTCTGGG...........................................................................	22	1	7.00	0.00	0.00	0.00	7.00
........................................................................AAATATCAGCTGGTAATTCTGGGAAA........................................................................	26	1	7.00	6.00	0.00	0.00	1.00
...........................................................................TATCAGCTGGTAATTCTGGG...........................................................................	20	1	7.00	0.00	0.00	1.00	6.00
........................................................................AAATATCAGCTGGCAATTCTGTG...........................................................................	23	1	7.00	0.00	0.00	0.00	7.00
........................................................................AAATCTCAGCTGGTAATTCTGGG...........................................................................	23	1	7.00	0.00	0.00	0.00	7.00
........................................................................AAATATCAGCTGGTAATTCTTTG...........................................................................	23	1	6.00	0.00	1.00	0.00	5.00
........................................................................AAATATCAGCTGGTAAATCTGGG...........................................................................	23	1	6.00	0.00	0.00	0.00	6.00
........................................................................AAATATCAGCTTGTAATTCTGGG...........................................................................	23	1	6.00	2.00	0.00	0.00	4.00
........................................................................AAATATCATCTGGTAATTCTGGG...........................................................................	23	1	6.00	1.00	0.00	0.00	5.00
........................................................................AAATATCAGCCGGTAATTCTGGG...........................................................................	23	1	6.00	0.00	1.00	0.00	5.00
........................................................................AAATATCAGCTGGTAATTCTTGT...........................................................................	23	1	6.00	0.00	0.00	0.00	6.00
........................................................................AAATATCAGCTGGTAATTCTTG............................................................................	22	1	6.00	0.00	0.00	2.00	4.00
.........................................................................................................................CGGAATTTCAGTTGGTATATA............................	21	1	5.00	5.00	0.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGGGG..........................................................................	24	1	5.00	3.00	0.00	0.00	2.00
........................................................................AAATATCAGCTCGTAATTCTGGG...........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
........................................................................AAATATCCGCTGGTAATTCTGTG...........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
........................................................................CAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
........................................................................AAATATCAGCTGGTAATCCTGGG...........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
........................................................................AAATATCAGCTGGTCATTCTGGGT..........................................................................	24	1	5.00	0.00	0.00	0.00	5.00
........................................................................AGATATCAGCTGGTAATTCT..............................................................................	20	1	5.00	3.00	1.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGGA..........................................................................	24	1	4.00	0.00	1.00	1.00	2.00
........................................................................AAATAGCAGCTGGGAATTCTGGG...........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................................AGATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	4.00	2.00	2.00	0.00	0.00
........................................................................AAATATCAGCTGGTAATTCTTGGT..........................................................................	24	1	4.00	0.00	0.00	2.00	2.00
........................................................................AAATATTAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................................AAATATCAGCTGGTAATTTTGGG...........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	1	4.00	3.00	1.00	0.00	0.00
........................................................................AAATAGCAGCTGGCAATTCTGGG...........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................................AAATATCTGCTGGTAATTCTGGG...........................................................................	23	1	4.00	1.00	0.00	0.00	3.00
........................................................................AAATATGAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................................AAATATCAGCTGGTAATTATGTG...........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................................AAATATCAGCTGGTAATTCTGGC...........................................................................	23	1	4.00	1.00	0.00	0.00	3.00
....................................................CTCACCCGATTCTCAAAGGT..................................................................................................	20	1	4.00	1.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGCTAATTCTGGG...........................................................................	23	1	4.00	0.00	1.00	0.00	3.00
........................................................................GGATATCAGCTGGTAATTCTGGG...........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
........................................................................ATATATCAGCTGGCAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................................AAATATCAGTTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................................AAATATCACCTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	1.00	2.00
........................................................................AAATATCAGCTGATAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGAAATTCT..............................................................................	20	1	3.00	0.00	2.00	1.00	0.00
........................................................................AAATATCAGCTGGTAATTCTGTGA..........................................................................	24	1	3.00	0.00	0.00	1.00	2.00
........................................................................AAATATCAGCTGGTAATTCTCTG...........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................................AAATATCAGCTGGTAATTCAGGG...........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................................AAATATCAACTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................................AACTATCAGCTGGTAATTCTGGG...........................................................................	23	1	3.00	0.00	0.00	2.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGTC...........................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................................AGATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	3.00	1.00	1.00	1.00	0.00
........................................................................AAATATCAGCTGGGAATTCTGGGA..........................................................................	24	1	3.00	0.00	0.00	0.00	3.00

droGri2

AG---AATG-A------------C---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCC-AAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--	Size	Hit Count	Total Norm	V109 Male body
........................................................................AAATATCAGCTGGTAATTCTGGG...........................................................................	23	1	38.00	38.00
........................................................................AAATATCAGCTGGTAATTCTGGGA..........................................................................	24	1	33.00	33.00
........................................................................AAATATCAGCTGGTAATTCT..............................................................................	20	1	22.00	22.00
........................................................................AAATATCAGCTGGTAATTCTGGGT..........................................................................	24	1	12.00	12.00
........................................................................AAATATCAGCTGGTAATTCTG.............................................................................	21	1	7.00	7.00
........................................................................AAATATCAGCTGGTAATT................................................................................	18	1	6.00	6.00
........................................................................AAATATCAGCTGGTAATTCTGG............................................................................	22	1	5.00	5.00
.....................................................TCACCCGATTCTCAAAGGT..................................................................................................	19	1	2.00	2.00
........................................................................AAATATCAACTGGTAATTCTGGG...........................................................................	23	1	1.00	1.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGA............................	21	1	1.00	1.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGAC...........................	22	1	1.00	1.00
.....AATG-A------------C---------------GT-C-------ACCTCACCCGAT............................................................................................................	21	1	1.00	1.00
........................................................................AAATATCAGCTGGTAATTCTGGA...........................................................................	23	1	1.00	1.00
............................................................................ATCAGCTGGTAATTCTGGG...........................................................................	19	1	1.00	1.00
........................................................................AAATATCAGCTGGTAATACTGGG...........................................................................	23	1	1.00	1.00
........................................................................AAATATCGGCTGGTAATTCTGGG...........................................................................	23	1	1.00	1.00
........................................................................AAGTATCAGCTGGTCATTCTG.............................................................................	21	1	1.00	1.00
........................................................................AACTATCAGCTGGTCATTCTGGGA..........................................................................	24	1	1.00	1.00
........................................................................AAATATCAGCTGGTAATTGGG.............................................................................	21	1	1.00	1.00
.........................................................................................................................CGGAATTTCAGTTGGTATCGACT..........................	23	1	1.00	1.00
........................................................................AAATACCAGCTGGTAATTCTGGG...........................................................................	23	1	1.00	1.00
........................................................................AAATATCAGCTGGTAATGCTGGGT..........................................................................	24	1	1.00	1.00
........................................................................AAATATCAGCTGGTAATTC...............................................................................	19	1	1.00	1.00
........................................................................AAATATCAACTGGTAATTCTG.............................................................................	21	1	1.00	1.00
........................................................................AACTATCAGCTGGTAATTCTGGG...........................................................................	23	1	1.00	1.00

Generated: 04/20/2012 at 05:21:21 EDT

dme-mir-283

chrX:15401989-15402088 +

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup