dme-mir-283- 12- and 20-way alignments

dme-mir-283	chrX:15401989-15402088 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 15402009-15402031
   star strand at position 15402056-15402077
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:15401974-15402103 +	AGAGAAAAGTGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT
droSim1	chrX_random:4022807-4022936 +	AGAGAAAAGTGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT
droSec1	super_73:136400-136529 +	AGAGAAAAGTGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT
droYak2	chrX:9587590-9587719 +	AGAGAAAAGTGTCACCTTACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT
droEre2	scaffold_4690:11632475-11632604 -	AGAGAAAAGTGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT
droAna3	scaffold_12929:2900376-2900493 -	------------CACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTGATTA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTCGAATTGCATTTTATCACCAA
dp4	Unknown	gagagagagTGCCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCA-AGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA-
droPer1	Unknown	gagagagagTGCCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCA-AGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA-
droWil1	Unknown	GAGTGCGAGTGGAGCCTAACG-AATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAGATATTTGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAA
droVir3	scaffold_12970:2047644-2047770 +	GTACAAGA-TGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACC--
droMoj3	scaffold_6359:3257696-3257822 +	GAA-CCAGCTGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCC-CAATA--TGAAACACTCGGAATTTCAGTTGGTATATACTTTTTTGAATTGCATTTTATCACCA-
droGri2	scaffold_14853:6953507-6953627 -	GA-------CGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCC-AAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA-

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:15401974-15402103 +	NA	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droSim1	chrX_random:4022807-4022936 +	1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droSec1	super_73:136400-136529 +	1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droYak2	chrX:9587590-9587719 +	1	AG---AGAA-AAG----------T---------------GT-C-------ACCTTACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droEre2	scaffold_4690:11632475-11632604 -	1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT-
droEug1	scf7180000409533:551298-551429 +	1	AG---AGAA-AAG----------T---------------GT-C------CACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAAA
droBia1	scf7180000302041:36406-36534 +	2	AG---AGAA-AAG----------T---------------GC-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droTak1	scf7180000414432:172281-172412 +	2	AG---AGAA-AAG----------T---------------GT-C------CACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCAAA
droEle1	scf7180000491023:1180304-1180433 -	1	GG---AGAA-AAG----------T---------------GT-C-------ACATCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGTCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCAA-
droRho1	scf7180000777097:75135-75263 -	1	GG---AGAA-AAG----------T---------------GT-C-------ACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droFic1	scf7180000454038:645767-645895 +	1	AG---AGAA-AAG----------T---------------GT-C-------ACCTCACAGGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droKik1	scf7180000302696:759820-759953 +	3	AGCAAAGAACCAG----------T---------------GT-CA----CCTCCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCGTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCAC----
droAna3	scaffold_12929:2900376-2900509 -	2	GT---GTTA-CAG----------T---------------GTTCA----CCACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTGATTA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTCGAATTGCATTTTATCACCAA-
droBip1	scf7180000396740:82101-82227 -	2	A---------AAG----------T---------------GTTCA----CCACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTCTGAATTGCATTTTATCACC---
dp4	chrXL_group1a:976013-976147 +	1	AG---AGAA--AG----------C------------GACGT-CACGATTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droPer1	super_26:1090677-1090833 +	1	AG---AGCG-AA-CGAGAGAGAGTGCCAGAGAAAGCGACGT-CACGATTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--
droWil1	scaffold_180702:1594772-1594907 -	2	GA----GTGCGAGTGGGA-----G---------------GG-A-------GCCTAACG-AATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAGATATTTGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAA-
droVir3	scaffold_12970:2047646-2047770 +	1	AC---A-----AG----A-----T---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACC---
droMoj3	scaffold_6359:3257693-3257822 +	2	AG---TGAACCAG----C-----T---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCC-AATA--TGAAACACTCGGAATTTCAGTTGGTATATACTTTTTTGAATTGCATTTTATCACCA--
droGri2	scaffold_14853:6953507-6953633 -	1	AG---AATG-A------------C---------------GT-C-------ACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCC-AAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA--

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AGAGAAAAGTGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT

Size

Hit Count

Total Norm

droSim1

AGAGAAAAGTGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	20773.00	7202.00	1613.00	2281.00	9677.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	6897.00	102.00	3314.00	2312.00	1169.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	1751.00	1.00	567.00	489.00	694.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	1515.00	176.00	256.00	403.00	680.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	1136.00	191.00	241.00	228.00	476.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	957.00	252.00	119.00	216.00	370.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	763.00	17.00	226.00	363.00	157.00
...................................AAATATCAGCTGGTAATTCTGGGC.........................................................................	24	1	356.00	14.00	73.00	59.00	210.00
...................................AAATATCAGCTGGTAATTCTGGGG.........................................................................	24	1	229.00	6.00	27.00	55.00	141.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	196.00	41.00	98.00	43.00	14.00
...................................AAATATCAGCTGGTAATTCTTGG..........................................................................	23	1	155.00	153.00	0.00	0.00	2.00
...................................AAATATCAGCTGGTAATTCTGGGTT........................................................................	25	1	134.00	5.00	33.00	77.00	19.00
...................................AAATATCAGCTGGGAATTCTGGG..........................................................................	23	1	128.00	34.00	14.00	7.00	73.00
...................................AAATATCAGCTGGTAATTCTGA...........................................................................	22	1	125.00	0.00	69.00	48.00	8.00
...................................AAATATCAGCTGGTAATTCTGGT..........................................................................	23	1	113.00	20.00	27.00	54.00	12.00
...................................AAATATCAGCTGGTAATTCTGTG..........................................................................	23	1	112.00	110.00	0.00	1.00	1.00
....................................................................................CGGAATTTCAGTTGGTATCG............................	20	1	99.00	0.00	29.00	25.00	45.00
...................................AAATATCAGCTGTTAATTCTGGG..........................................................................	23	1	91.00	4.00	9.00	6.00	72.00
......................................TATCAGCTGGTAATTCTGGGAGCT......................................................................	24	1	86.00	0.00	7.00	11.00	68.00
...................................AAATATCAGCTGGTAATTCTGT...........................................................................	22	1	68.00	2.00	40.00	26.00	0.00
..................................TAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	67.00	23.00	4.00	14.00	26.00
................TCACACGATTCTCAAAGGT.................................................................................................	19	1	64.00	48.00	2.00	0.00	14.00
..................................TAAATATCAGCTGGTAATTCTG............................................................................	22	1	63.00	2.00	24.00	21.00	16.00
...................................AAATATCAGCTGGTAATTCTGGGAT........................................................................	25	1	52.00	2.00	21.00	18.00	11.00
...................................AAATATCAGCTGGCAATTCTGGG..........................................................................	23	1	51.00	38.00	1.00	2.00	10.00
...................................AAATATCAGCTGGTCATTCTGGG..........................................................................	23	1	49.00	49.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGC..........................................................................	23	1	47.00	13.00	7.00	10.00	17.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	41.00	36.00	0.00	3.00	2.00
......................................TATCAGCTGGTAATTCTGGGAGC.......................................................................	23	1	36.00	9.00	4.00	4.00	19.00
....................................AATATCAGCTGGTAATTCTGGG..........................................................................	22	1	35.00	16.00	4.00	6.00	9.00
...................................AAATATCAGCTGCTAATTCTGGG..........................................................................	23	1	32.00	2.00	2.00	1.00	27.00
...................................AAATATCAGCTGGGAATTCTG............................................................................	21	1	29.00	1.00	9.00	11.00	8.00
...................................AAATATCAGCCGGTAATTCTGGG..........................................................................	23	1	27.00	9.00	4.00	2.00	12.00
...................................AAATATCAGCTGGTGATTCTGGG..........................................................................	23	1	25.00	21.00	0.00	1.00	3.00
..................................TAAATATCAGCTGGTAATTC..............................................................................	20	1	24.00	0.00	6.00	8.00	10.00
...................................AAATATCAGCTGTTAATTCTGG...........................................................................	22	1	24.00	0.00	6.00	3.00	15.00
...................................AAATATCAGCTGGAAATTCTGGG..........................................................................	23	1	22.00	5.00	1.00	1.00	15.00
...................................AAATATCAGCTGGTAATTCTGAC..........................................................................	23	1	21.00	0.00	4.00	3.00	14.00
...................................AAATATCATCTGGTAATTCTG............................................................................	21	1	21.00	0.00	11.00	4.00	6.00
.....................................ATATCAGCTGGTAATTCTGGG..........................................................................	21	1	20.00	10.00	0.00	2.00	8.00
...................................AAATATCAGCTGGTAATTCTGCG..........................................................................	23	1	19.00	18.00	0.00	1.00	0.00
...................................GAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	18.00	13.00	1.00	1.00	3.00
...................................AAATATCAGCTGGTAATTCCGGG..........................................................................	23	1	18.00	9.00	0.00	1.00	8.00
...................................AAATATCAGCTGGTAATTCTGAG..........................................................................	23	1	18.00	8.00	0.00	0.00	10.00
...................................AGATATCAGCTGGTAATTCTGGG..........................................................................	23	1	18.00	7.00	2.00	1.00	8.00
..................................CAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	18.00	14.00	0.00	0.00	4.00
...................................AAATATCATCTGGTAATTCTGGG..........................................................................	23	1	18.00	2.00	0.00	0.00	16.00
...................................AAATATCAGCTGGTAATTCTGGGAA........................................................................	25	1	18.00	3.00	3.00	1.00	11.00
...................................AAATATCAGATGGTAATTCTGGG..........................................................................	23	1	17.00	17.00	0.00	0.00	0.00
...................................AAACATCAGCTGGTAATTCTGGG..........................................................................	23	1	17.00	11.00	0.00	0.00	6.00
...................................AAATATCAGCTGGTAATTCTCGG..........................................................................	23	1	17.00	15.00	0.00	0.00	2.00
...................................AAATATCAGCTGGTAATTCTGGAA.........................................................................	24	1	16.00	1.00	6.00	6.00	3.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	16.00	7.00	4.00	5.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCGAC..........................	22	1	16.00	15.00	0.00	0.00	1.00
...................................AAATATAAGCTGGTAATTCTGGG..........................................................................	23	1	16.00	15.00	0.00	0.00	1.00
...................................AAATATCAGCTGGTAATTTTGGG..........................................................................	23	1	16.00	12.00	0.00	1.00	3.00
...................................AAATATCAGCTGGTACTTCTGGG..........................................................................	23	1	15.00	15.00	0.00	0.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCGA...........................	21	1	15.00	3.00	3.00	5.00	4.00
...................................AAATATCAGCTGGTAATTCGG............................................................................	21	1	15.00	0.00	5.00	8.00	2.00
...................................AAATATCAGCTGGTAATTCTGTT..........................................................................	23	1	14.00	3.00	10.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTGGAT.........................................................................	24	1	14.00	0.00	7.00	7.00	0.00
...................................AAATATCAGCTGGTAATTATGGG..........................................................................	23	1	14.00	12.00	0.00	0.00	2.00
...................................AAATATCAGCTTGTAATTCTGGG..........................................................................	23	1	14.00	1.00	1.00	3.00	9.00
...................................AAATATCAGCTCGTAATTCTGGG..........................................................................	23	1	13.00	2.00	1.00	0.00	10.00
.....................................ATATCAGCTGGTAATTCTG............................................................................	19	1	13.00	0.00	2.00	7.00	4.00
....................................AATATCAGCTGGTAATTCTG............................................................................	20	1	13.00	1.00	5.00	6.00	1.00
...................................AAATATCAGCTGGTTATTCTGGG..........................................................................	23	1	13.00	13.00	0.00	0.00	0.00
..................................TAAATATCAGCTGGTAATTCTGG...........................................................................	23	1	13.00	5.00	1.00	1.00	6.00
...................................AAATAGCAGCTGGTAATTCTGGG..........................................................................	23	1	12.00	11.00	0.00	1.00	0.00
...................................AAATATCAGCCGGTAATTCTG............................................................................	21	1	12.00	0.00	5.00	5.00	2.00
...................................AAATATCAGCTGGTAATTCTTTG..........................................................................	23	1	12.00	12.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGAC.........................................................................	24	1	12.00	0.00	5.00	2.00	5.00
...................................AAATATCAGCTGATAATTCTGGG..........................................................................	23	1	12.00	4.00	0.00	3.00	5.00
...................................AAATATCAGCTGGTAATTCTAGG..........................................................................	23	1	12.00	10.00	0.00	0.00	2.00
...................................AAATATCAGCTGGTAATTCTGGGAC........................................................................	25	1	11.00	0.00	5.00	3.00	3.00
...................................AAATATCAGCTGGGAATTC..............................................................................	19	1	10.00	0.00	3.00	3.00	4.00
...................................................................................TCGGAATTTCAGTTGGTATCG............................	21	1	10.00	0.00	9.00	0.00	1.00
...................................AAATATCAGCTGGCAATTCTG............................................................................	21	1	10.00	2.00	2.00	4.00	2.00
......................................TATCAGCTGGTAATTCTGGG..........................................................................	20	1	10.00	9.00	0.00	0.00	1.00
...................................AAATATCAGCTGGTAATTCTGGGAAA.......................................................................	26	1	10.00	3.00	1.00	0.00	6.00
...................................AAATATCAGCTGGTAATTCTGGGTA........................................................................	25	1	10.00	1.00	2.00	3.00	4.00
......................................TATCAGCTGGTAATTCTGGGAGCC......................................................................	24	1	10.00	0.00	0.00	0.00	10.00
...................................AAATATCAGCTGGTAATTCTC............................................................................	21	1	10.00	1.00	4.00	3.00	2.00
...................................AAATATCAACTGGTAATTCTGGG..........................................................................	23	1	9.00	5.00	1.00	1.00	2.00
...................................AAATGTCAGCTGGTAATTCTGGG..........................................................................	23	1	9.00	5.00	0.00	2.00	2.00
...................................AAATATCAGCTGGGAATTCTGGGT.........................................................................	24	1	9.00	1.00	3.00	0.00	5.00
...................................AAATATCAGCTxGTAATTCTGGG..........................................................................	22	1	9.00	1.00	0.00	3.00	5.00
...................................AAATATCAGCTGGGAATTCTGGGA.........................................................................	24	1	9.00	0.00	2.00	1.00	6.00
...................................AAATATCACCTGGTAATTCTGGG..........................................................................	23	1	8.00	1.00	0.00	0.00	7.00
...................................AAATATCCGCTGGTAATTCTGGG..........................................................................	23	1	8.00	8.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAAGTCTGGG..........................................................................	23	1	8.00	7.00	0.00	0.00	1.00
...................................ACATATCAGCTGGTAATTCTGGG..........................................................................	23	1	8.00	8.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTTGT..........................................................................	23	1	8.00	8.00	0.00	0.00	0.00
...................................AAATATCAGCTGCTAATTCTGG...........................................................................	22	1	7.00	1.00	2.00	0.00	4.00
...................................AAATATCAGCTGGTAATTCGGGG..........................................................................	23	1	7.00	6.00	1.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTGG...........................................................................	22	1	7.00	0.00	0.00	1.00	6.00
...................................AAATATCAGCTGTTAATTCTG............................................................................	21	1	7.00	0.00	1.00	2.00	4.00
...................................AAATATCAGCTGGTAATTCTGC...........................................................................	22	1	7.00	0.00	3.00	4.00	0.00
...................................AAATACCAGCTGGTAATTCTGGG..........................................................................	23	1	6.00	5.00	0.00	0.00	1.00
...................................AAATATCAGCTAGTAATTCTGGG..........................................................................	23	1	6.00	4.00	0.00	0.00	2.00
...................................AAATATCACCTGGTAATTCTG............................................................................	21	1	6.00	0.00	3.00	1.00	2.00

droSec1

AGAGAAAAGTGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	11551.00	727.00	9911.00	913.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	2980.00	627.00	2180.00	173.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	1479.00	389.00	978.00	112.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	864.00	250.00	134.00	480.00
................TCACACGATTCTCAAAGGT.................................................................................................	19	1	560.00	6.00	523.00	31.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	457.00	52.00	364.00	41.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	373.00	82.00	110.00	181.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	190.00	16.00	147.00	27.00
....................................AATATCAGCTGGTAATTCTGGG..........................................................................	22	1	115.00	13.00	91.00	11.00
...................................AAATATCAGCTGGTAATTCTGGT..........................................................................	23	1	112.00	26.00	66.00	20.00
...................................AAATATCAGCTGGTAATTCTGGGTT........................................................................	25	1	98.00	39.00	42.00	17.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	73.00	20.00	39.00	14.00
...................................AAATATTAGCTGGTAATTCTGGG..........................................................................	23	1	68.00	0.00	67.00	1.00
....................................................................................CGGAATTTCAGTTGGTATCGAC..........................	22	1	65.00	14.00	51.00	0.00
.....................................ATATCAGCTGGTAATTCTGGG..........................................................................	21	1	50.00	7.00	43.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGAT........................................................................	25	1	48.00	21.00	18.00	9.00
..................................TAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	46.00	0.00	44.00	2.00
...............CTCACACGATTCTCAAAGGT.................................................................................................	20	1	43.00	2.00	37.00	4.00
....................................................................................CGGAATTTCAGTTGGTATCGA...........................	21	1	39.00	24.00	14.00	1.00
...................................AAATATCAGCTGGTAATTCTGGGAA........................................................................	25	1	37.00	14.00	22.00	1.00
.................CACACGATTCTCAAAGGT.................................................................................................	18	1	36.00	0.00	32.00	4.00
...................................AAATATCAGCTGGTAATTCTGT...........................................................................	22	1	35.00	11.00	3.00	21.00
...................................AAAAATCAGCTGGTAATTCTGGG..........................................................................	23	1	34.00	0.00	34.00	0.00
......................................TATCAGCTGGTAATTCTGGGAGC.......................................................................	23	1	30.00	7.00	23.00	0.00
..................................TAAATATCAGCTGGTAATTCT.............................................................................	21	1	29.00	7.00	6.00	16.00
....................................AATATCAGCTGGTAATTCTGGGA.........................................................................	23	1	27.00	14.00	13.00	0.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	26.00	3.00	22.00	1.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	21.00	2.00	8.00	11.00
...................................AAATATCAGTTGGTAATTCTGGG..........................................................................	23	1	21.00	0.00	20.00	1.00
.....................................AAATCAGCTGGTAATTCTGGG..........................................................................	21	1	20.00	0.00	20.00	0.00
...................................AAATATCAGCTGGTxATTCTGGG..........................................................................	22	1	20.00	0.00	20.00	0.00
...................................AAATATCAGCTGGTAATTTTGGG..........................................................................	23	1	19.00	7.00	12.00	0.00
...................................AAATATCAGCTGGCAATTCTGGG..........................................................................	23	1	18.00	0.00	16.00	2.00
...................................AAATATCGGCTGGTAATTCTGGG..........................................................................	23	1	17.00	2.00	14.00	1.00
....................................AATATCAGCTGGTAATTCTGGGT.........................................................................	23	1	16.00	7.00	6.00	3.00
...................................AAATATCAGCTGGTAATTATGGG..........................................................................	23	1	16.00	12.00	1.00	3.00
...................................AAATATCAGCTxGTAATTCTGGG..........................................................................	22	1	16.00	3.00	13.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGC.........................................................................	24	1	16.00	7.00	9.00	0.00
....................................AAAATCAGCTGGTAATTCTGGG..........................................................................	22	1	14.00	0.00	14.00	0.00
...................................AAATATCAGCTGGTAGTTCTGGG..........................................................................	23	1	14.00	0.00	14.00	0.00
...................................AAATATCAGCTGGTAATTCTGGC..........................................................................	23	1	14.00	2.00	9.00	3.00
...................................AAATATCAGCTGGTAATCCTGGG..........................................................................	23	1	14.00	0.00	12.00	2.00
...................................AAATATCAGCCGGTAATTCTGGG..........................................................................	23	1	14.00	0.00	13.00	1.00
......................................TATCAGCTGGTAATTCTGGG..........................................................................	20	1	12.00	0.00	11.00	1.00
..................................TAAATATCAGCTGGTAATTCTG............................................................................	22	1	12.00	4.00	3.00	5.00
...................................GAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	11.00	0.00	10.00	1.00
...................................AAATATCAGTTGGTAATTCTGG...........................................................................	22	1	11.00	0.00	11.00	0.00
...................................AAATATCACCTGGTAATTCTGGG..........................................................................	23	1	11.00	0.00	10.00	1.00
...................................AAATATCAGCTGGTAATTTTGGGT.........................................................................	24	1	11.00	2.00	9.00	0.00
...................................AAATATCAGCTGGAAATTCTGGG..........................................................................	23	1	11.00	0.00	11.00	0.00
...................................AAATATCAGCTGGTAATTCTGAG..........................................................................	23	1	10.00	0.00	9.00	1.00
...................................TAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	10.00	1.00	7.00	2.00
...................................AAATATCAGCTGGTAATTCTGGGAAA.......................................................................	26	1	10.00	0.00	10.00	0.00
...................................AAGTATCAGCTGGTAATTCTGGG..........................................................................	23	1	10.00	2.00	8.00	0.00
...................................AAATATCAACTGGTAATTCTGGG..........................................................................	23	1	9.00	0.00	8.00	1.00
...................................AAATATCAGCTAGTAATTCTGGG..........................................................................	23	1	9.00	0.00	9.00	0.00
...................................AAATATCAGCTGGTAATTCTT............................................................................	21	1	9.00	2.00	0.00	7.00
...................................AAATATCAGCTGGTGATTCTGGG..........................................................................	23	1	9.00	0.00	9.00	0.00
...................................AAATGTCAGCTGGTAATTCTGGG..........................................................................	23	1	9.00	0.00	9.00	0.00
...................................AAATATCAGCTGGTAATTCCGGG..........................................................................	23	1	9.00	1.00	7.00	1.00
...................................AAATATCAGCTGGTAATTCTTGG..........................................................................	23	1	9.00	1.00	8.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGG.........................................................................	24	1	9.00	0.00	7.00	2.00
...................................AAACATCAGCTGGTAATTCTGGG..........................................................................	23	1	9.00	0.00	8.00	1.00
..................................CAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	9.00	1.00	8.00	0.00
...................................AAATATCATCTGGTAATTCTGGG..........................................................................	23	1	9.00	1.00	7.00	1.00
...................................ACATATCAGCTGGTAATTCTGGG..........................................................................	23	1	9.00	0.00	8.00	1.00
....................................................................................CGGAATTTCAGTTGGTATCG............................	20	1	9.00	6.00	2.00	1.00
...................................AAATATCAGCTGGTAATTCTGGGTA........................................................................	25	1	9.00	2.00	7.00	0.00
......................................TATCAGCTGGTAATTCTGGGAG........................................................................	22	1	9.00	1.00	7.00	1.00
...................................AAATACCAGCTGGTAATTCTGGG..........................................................................	23	1	8.00	1.00	7.00	0.00
.............................................TGGTAATTCTxAGAGCTAA....................................................................	18	1	8.00	0.00	7.00	1.00
...................................AAATATCAGCTGGTAACTCTGGG..........................................................................	23	1	8.00	0.00	8.00	0.00
...................................AAATATCAGCTGGTAATTCTGTG..........................................................................	23	1	8.00	0.00	6.00	2.00
..................................TAAATATCAGCTGGTAATTCTGGGT.........................................................................	25	1	8.00	3.00	4.00	1.00
...................................AGATATCAGCTGGTAATTCTGGG..........................................................................	23	1	8.00	0.00	7.00	1.00
...................................AAAAATCAGCTGGTAATTCTGGGT.........................................................................	24	1	8.00	0.00	7.00	1.00
...................................AAATATCAGCTCGTAATTCTGGG..........................................................................	23	1	7.00	1.00	5.00	1.00
...................................AAATATCAGCTGCTAATTCTGGG..........................................................................	23	1	7.00	0.00	6.00	1.00
..............CCTCACACGATTCTCAAAGGT.................................................................................................	21	1	7.00	0.00	7.00	0.00
...................................AAATATCAGTTGGTAATTCTGGGT.........................................................................	24	1	7.00	0.00	6.00	1.00
...................................AAATATCAGCTGGTxATTCTGGGT.........................................................................	23	1	7.00	0.00	7.00	0.00
.....................................ATATCAGCTGGTAATTCTGGGT.........................................................................	22	1	7.00	2.00	5.00	0.00
...................................AAATATCAGCTGGTTATTCTGGG..........................................................................	23	1	7.00	0.00	7.00	0.00
...................................AAATATCAGCAGGTAATTCTGGG..........................................................................	23	1	6.00	0.00	6.00	0.00
......................................TATCAGCTGGTAATTCTGGGAGCT......................................................................	24	1	6.00	0.00	6.00	0.00
...................................AAATATCAGCTGGTAATTAT.............................................................................	20	1	6.00	5.00	0.00	1.00
...................................AAATATCAGATGGTAATTCTGGG..........................................................................	23	1	6.00	1.00	2.00	3.00
...................................AAATATTAGCTGGTAATTCTGGGA.........................................................................	24	1	6.00	1.00	5.00	0.00
...................................AAATATCAGCTGGTAATTCTCGG..........................................................................	23	1	6.00	1.00	4.00	1.00
...................................AAATATCAGCTGGTAATTCTAGG..........................................................................	23	1	6.00	0.00	5.00	1.00
...................................AAATATCAGCTGGTACTTCTGGGT.........................................................................	24	1	6.00	0.00	6.00	0.00
...................................ATATATCAGCTGGTAATTCTGGG..........................................................................	23	1	5.00	0.00	5.00	0.00
................TCACATGATTCTCAAAGGT.................................................................................................	19	1	5.00	0.00	5.00	0.00
...................................AAATATTAGCTGGTAATTCTGGGT.........................................................................	24	1	5.00	1.00	4.00	0.00
...................................AAATATCAGCTGGTAATTATGGGT.........................................................................	24	1	5.00	4.00	1.00	0.00
....................................AATATCAGCTGGTAATTCTG............................................................................	20	1	5.00	1.00	3.00	1.00
...................................AAATGTCAGCTGGTAATTCTGGGT.........................................................................	24	1	5.00	1.00	4.00	0.00
...................................AAATATCAGCTTGTAATTCTGGG..........................................................................	23	1	5.00	1.00	3.00	1.00
...................................AAATATCAGCTGGTCATTCTGGG..........................................................................	23	1	5.00	0.00	4.00	1.00
...................................AAATATCAGCTGATAATTCTGGG..........................................................................	23	1	5.00	0.00	4.00	1.00
...................................AAATATCAGCTGGTAATTGTGGGT.........................................................................	24	1	5.00	5.00	0.00	0.00

droYak2

AGAGAAAAGTGTCACCTTACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	8366.00	7214.00	31.00	163.00	84.00	874.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	937.00	45.00	3.00	26.00	14.00	849.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	443.00	260.00	6.00	54.00	41.00	82.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	344.00	133.00	5.00	97.00	27.00	82.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	226.00	92.00	1.00	12.00	4.00	117.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	218.00	0.00	3.00	1.00	3.00	211.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	176.00	22.00	15.00	71.00	57.00	11.00
...................................AAATATCAGCTGGTAATTCTTGG..........................................................................	23	1	132.00	125.00	5.00	0.00	1.00	1.00
................TTACACGATTCTCAAAGGT.................................................................................................	19	1	128.00	112.00	1.00	8.00	5.00	2.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	94.00	17.00	1.00	1.00	1.00	74.00
...................................AAATATCAGCTGGTAATTCTGGGTT........................................................................	25	1	56.00	1.00	3.00	3.00	2.00	47.00
...................................AAATATCAGCTGGTAATTCTGTG..........................................................................	23	1	52.00	43.00	0.00	0.00	9.00	0.00
...................................AAATATCAGCTGGTAATTCTGGT..........................................................................	23	1	51.00	17.00	1.00	10.00	6.00	17.00
...................................AAATATCAGCTGGTAATTCTGGGC.........................................................................	24	1	48.00	9.00	0.00	1.00	0.00	38.00
...................................AAATATCAGCTGGTCATTCTGGG..........................................................................	23	1	42.00	40.00	1.00	0.00	1.00	0.00
...................................AAATATCAGCTGGGAATTCTGGG..........................................................................	23	1	33.00	16.00	0.00	1.00	1.00	15.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	29.00	27.00	0.00	2.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGG.........................................................................	24	1	21.00	3.00	0.00	0.00	0.00	18.00
...................................AAATATCAGCTGGCAATTCTGGG..........................................................................	23	1	20.00	18.00	0.00	1.00	1.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCGAC..........................	22	1	19.00	11.00	0.00	8.00	0.00	0.00
.....................................ATATCAGCTGGTAATTCTGGG..........................................................................	21	1	16.00	8.00	0.00	4.00	1.00	3.00
...................................AAATATCAGCTGGTAATTCTGCG..........................................................................	23	1	16.00	15.00	0.00	1.00	0.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCGA...........................	21	1	16.00	5.00	1.00	9.00	1.00	0.00
...................................AAATATCAGCTGGTTATTCTGGG..........................................................................	23	1	15.00	15.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTATGGG..........................................................................	23	1	14.00	14.00	0.00	0.00	0.00	0.00
...................................AAATATAAGCTGGTAATTCTGGG..........................................................................	23	1	14.00	14.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTGATTCTGGG..........................................................................	23	1	13.00	12.00	0.00	1.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTCGG..........................................................................	23	1	13.00	13.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTACTTCTGGG..........................................................................	23	1	12.00	12.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCCGGG..........................................................................	23	1	12.00	12.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTG............................................................................	21	1	12.00	0.00	0.00	0.00	0.00	12.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	12.00	7.00	0.00	3.00	0.00	2.00
...................................AAATATCAGCTGGTAATTCTGGGAA........................................................................	25	1	12.00	1.00	0.00	8.00	1.00	2.00
...................................AAATATCAGCTGGTAATTCTGGGAT........................................................................	25	1	11.00	1.00	1.00	1.00	3.00	5.00
...................................AAATATCAGCTGGTAATTCTGAG..........................................................................	23	1	11.00	11.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGC..........................................................................	23	1	11.00	8.00	0.00	0.00	1.00	2.00
...................................AAATATCAGCTGGTAATTCTAGG..........................................................................	23	1	11.00	11.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGAAATTCTGGG..........................................................................	23	1	11.00	7.00	1.00	1.00	0.00	2.00
...................................AAATATCAGATGGTAATTCTGGG..........................................................................	23	1	10.00	10.00	0.00	0.00	0.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCG............................	20	1	10.00	1.00	0.00	2.00	0.00	7.00
...................................GAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
....................................AATATCAGCTGGTAATTCTGGG..........................................................................	22	1	9.00	7.00	0.00	0.00	0.00	2.00
...................................AAATATCAGCTGGTAATTCTGA...........................................................................	22	1	9.00	0.00	0.00	0.00	0.00	9.00
...................................AAATATCAGCTGGTAAGTCTGGG..........................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGT...........................................................................	22	1	9.00	0.00	2.00	2.00	2.00	3.00
...................................AGATATCAGCTGGTAATTCTGGG..........................................................................	23	1	8.00	6.00	0.00	0.00	2.00	0.00
...............CTTACACGATTCTCAAAGGT.................................................................................................	20	1	8.00	6.00	0.00	2.00	0.00	0.00
...................................AAATATCAGCTAGTAATTCTGGG..........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAACTCTGGG..........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAAATCTGGG..........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
...................................AAACATCAGCTGGTAATTCTGGG..........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
..................................CAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	7.00	7.00	0.00	0.00	0.00	0.00
...................................AAATATTAGCTGGTAATTCTGGG..........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
...................................TAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
..................................TAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	7.00	5.00	0.00	1.00	0.00	1.00
...................................AAATATCAGCCGGTAATTCTGGG..........................................................................	23	1	7.00	6.00	0.00	0.00	0.00	1.00
......................................TATCAGCTGGTAATTCTGGGAGCT......................................................................	24	1	6.00	1.00	0.00	0.00	0.00	5.00
...................................AAATATCAGCTGGTAATTCTTTG..........................................................................	23	1	6.00	5.00	1.00	0.00	0.00	0.00
...................................AAATGTCAGCTGGTAATTCTGGG..........................................................................	23	1	6.00	6.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAGTTCTGGG..........................................................................	23	1	6.00	6.00	0.00	0.00	0.00	0.00
.................TACACGATTCTCAAAGGT.................................................................................................	18	1	6.00	5.00	0.00	0.00	0.00	1.00
......................................TATCAGCTGGTAATTCTGGGAGC.......................................................................	23	1	6.00	4.00	0.00	0.00	0.00	2.00
...................................AAGTATCAGCTGGTAATTCTGGG..........................................................................	23	1	6.00	5.00	0.00	0.00	0.00	1.00
...................................AAATAGCAGCTGGTAATTCTGGG..........................................................................	23	1	5.00	4.00	0.00	0.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCAGGG..........................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
...................................AAATACCAGCTGGTAATTCTGGG..........................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
...................................AAATATCGGCTGGTAATTCTGGG..........................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGGAATTC..............................................................................	19	1	5.00	0.00	0.00	0.00	0.00	5.00
...................................CAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
...................................AAATATCCGCTGGTAATTCTGGG..........................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
......................................TATCAGCTGGTAATTCTGGG..........................................................................	20	1	5.00	5.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTTGGT.........................................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGCTAATTCTGGG..........................................................................	23	1	4.00	2.00	0.00	0.00	0.00	2.00
....................................AATATCAGCTGGTAATTCTGGGA.........................................................................	23	1	4.00	1.00	0.00	1.00	1.00	1.00
...................................AAATATCAGCTGGTAATTCTGTGT.........................................................................	24	1	4.00	1.00	1.00	0.00	2.00	0.00
...................................AAATATCATCTGGTAATTCTGGG..........................................................................	23	1	4.00	3.00	0.00	0.00	0.00	1.00
...................................AAATATCAGTTGGTAATTCTGGG..........................................................................	23	1	4.00	3.00	0.00	0.00	1.00	0.00
...................................AAATATCAGCTGGTAATTGTGGG..........................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATCCTGGG..........................................................................	23	1	4.00	3.00	0.00	1.00	0.00	0.00
...................................AAATATCAGCTGATAATTCTGGG..........................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...................................AAATATCTGCTGGTAATTCTGGG..........................................................................	23	1	4.00	3.00	0.00	0.00	1.00	0.00
...................................AAATATCGGCTGGTAATTCTTGG..........................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTTGT..........................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTAGGT.........................................................................	24	1	4.00	3.00	0.00	0.00	0.00	1.00
...................................AAATATCAGCTGGTAATTCGG............................................................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
...................................AAATATCAGCTGGTAATTCTGTGA.........................................................................	24	1	4.00	1.00	1.00	0.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCTGTC..........................................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
......................................TATCAGCTGGTAATTCTG............................................................................	18	1	3.00	1.00	0.00	0.00	0.00	2.00
...................................AAATATGAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCGGGG..........................................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTT............................................................................	21	1	3.00	0.00	1.00	2.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGTT..........................................................................	23	1	3.00	1.00	0.00	0.00	0.00	2.00
...................................AAATATCAGCTGGTAATTCTTCG..........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTGGGT.........................................................................	24	1	3.00	1.00	0.00	1.00	1.00	0.00
.......................................ATCAGCTGGTAATTCTGGGA.........................................................................	20	1	3.00	0.00	0.00	3.00	0.00	0.00
...................................AAATAGCAGCTGGCAATTCTGGG..........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTTGGA.........................................................................	24	1	3.00	1.00	2.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGAC..........................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
...................................CCATATCAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGTTAATTCTGGG..........................................................................	23	1	3.00	1.00	0.00	0.00	0.00	2.00
.....................................ATATCAGCTGGTAATTCTG............................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00

droEre2

AGAGAAAAGTGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	5282.00	2564.00	74.00	952.00	1692.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	805.00	22.00	31.00	14.00	738.00
...................................AAATATCAGCTGGTAATTCTTGG..........................................................................	23	1	492.00	362.00	1.00	95.00	34.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	396.00	47.00	8.00	25.00	316.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	387.00	102.00	11.00	108.00	166.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	347.00	78.00	8.00	105.00	156.00
...................................AAATATCAGCTGGTAATTCTGTG..........................................................................	23	1	328.00	251.00	1.00	61.00	15.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	218.00	32.00	7.00	72.00	107.00
...................................AAATATCAGCTGGTAATTCTGGT..........................................................................	23	1	148.00	76.00	4.00	35.00	33.00
...................................AAATATCAGCTGGTAATTCTTTG..........................................................................	23	1	63.00	54.00	0.00	9.00	0.00
...................................AAATATCAGCTGGTAATTCTTGT..........................................................................	23	1	61.00	46.00	1.00	13.00	1.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	54.00	5.00	2.00	9.00	38.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	40.00	30.00	0.00	6.00	4.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	38.00	2.00	0.00	4.00	32.00
................TCACACGATTCTCAAAGGT.................................................................................................	19	1	36.00	13.00	1.00	0.00	22.00
...................................AAATATCAGCTGGTAATTCTGT...........................................................................	22	1	35.00	1.00	2.00	5.00	27.00
...................................AAATATCAGCTTGTAATTCTGGG..........................................................................	23	1	32.00	11.00	0.00	11.00	10.00
...................................AAATATCAGCTGGTAATTCTCGG..........................................................................	23	1	31.00	26.00	1.00	3.00	1.00
.....................................ATATCAGCTGGTAATTCTGGG..........................................................................	21	1	30.00	20.00	1.00	8.00	1.00
...................................AAATATCAGCTGGTAATTCTGGC..........................................................................	23	1	29.00	5.00	1.00	2.00	21.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	28.00	0.00	1.00	2.00	25.00
...................................AAATATCAGCTGGTAATTCTGCG..........................................................................	23	1	27.00	20.00	0.00	6.00	1.00
...................................AAATATCATCTGGTAATTCTGGG..........................................................................	23	1	26.00	11.00	0.00	2.00	13.00
...................................AAATATCAGCTGGCAATTCTGGG..........................................................................	23	1	24.00	19.00	0.00	2.00	3.00
...................................AAATATCAGCTGGGAATTCTGGG..........................................................................	23	1	23.00	13.00	2.00	5.00	3.00
....................................................................................CGGAATTTCAGTTGGTATCGAC..........................	22	1	23.00	2.00	0.00	12.00	9.00
...................................AAATATCAGCTGGTAATTCTTGGA.........................................................................	24	1	18.00	7.00	0.00	7.00	4.00
...................................AAATATCAGCTGTTAATTCTGGG..........................................................................	23	1	18.00	11.00	0.00	2.00	5.00
...................................AAATATCAGCTGGTAATTCTTGGT.........................................................................	24	1	17.00	10.00	2.00	2.00	3.00
...................................AAATATCAGCTGGTAATTCTGGGAA........................................................................	25	1	16.00	0.00	1.00	7.00	8.00
....................................AATATCAGCTGGTAATTCTGGG..........................................................................	22	1	15.00	6.00	0.00	2.00	7.00
...................................AAATATCAGCTGGTAATTCTGTT..........................................................................	23	1	15.00	11.00	0.00	4.00	0.00
...................................AAATATCAGCTGGTAATTCTAGG..........................................................................	23	1	15.00	11.00	0.00	3.00	1.00
...................................AAATATCAGCTTGTAATTCTTGG..........................................................................	23	1	14.00	8.00	1.00	5.00	0.00
...................................AAATATCAGCTGGTCATTCTGGG..........................................................................	23	1	14.00	10.00	0.00	3.00	1.00
...................................AAATATCAGCTGGTAATTCTGTGT.........................................................................	24	1	13.00	6.00	0.00	6.00	1.00
...................................AAATATCAGCTGGTAATTCTGAG..........................................................................	23	1	13.00	7.00	0.00	3.00	3.00
...................................AAATATCAGCTGGTAATTCTT............................................................................	21	1	12.00	1.00	0.00	1.00	10.00
...................................AAATATCAGCTGGTAATTCTTG...........................................................................	22	1	11.00	4.00	0.00	7.00	0.00
...................................AAATATCAGCCGGTAATTCTGGG..........................................................................	23	1	11.00	3.00	0.00	2.00	6.00
...................................GAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	10.00	6.00	0.00	3.00	1.00
...................................AAATATCACCTGGTAATTCTGGG..........................................................................	23	1	10.00	4.00	0.00	1.00	5.00
...................................AAATATCAGCTGGTAATTCTCTG..........................................................................	23	1	10.00	8.00	0.00	2.00	0.00
...................................AAATATCAGCTGGTAATCCTGGG..........................................................................	23	1	10.00	4.00	0.00	1.00	5.00
...................................AAATATCAGCTGGTAATTCCGGG..........................................................................	23	1	9.00	5.00	0.00	2.00	2.00
...................................AAATATCAGCTGTTAATTCTGTG..........................................................................	23	1	9.00	8.00	0.00	1.00	0.00
...................................AGATATCAGCTGGTAATTCTGGG..........................................................................	23	1	9.00	5.00	0.00	1.00	3.00
..................................TAAATATCAGCTGGTAATTCT.............................................................................	21	1	9.00	0.00	0.00	0.00	9.00
....................................................................................CGGAATTTCAGTTGGTATCGA...........................	21	1	9.00	1.00	0.00	5.00	3.00
...................................AAATATCAGCTGGTAATTCTGTGA.........................................................................	24	1	9.00	4.00	1.00	4.00	0.00
...................................AAATATCAGCTGGTGATTCTGGG..........................................................................	23	1	8.00	5.00	0.00	2.00	1.00
...................................AAATATCAGCTGGTAATTCTTCG..........................................................................	23	1	8.00	7.00	0.00	1.00	0.00
..................................TAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	8.00	4.00	0.00	2.00	2.00
...................................AAATATCAGCTGGAAATTCTGGG..........................................................................	23	1	8.00	3.00	0.00	0.00	5.00
.............................................TGGTAATTCTxAGAGCTAA....................................................................	18	1	7.00	6.00	0.00	1.00	0.00
...................................AAATATCATCTGGTAATTCT.............................................................................	20	1	7.00	1.00	0.00	0.00	6.00
...................................AAATATAAGCTGGTAATTCTGGG..........................................................................	23	1	7.00	1.00	0.00	0.00	6.00
...................................AAATATCAGCTGGTAATTCTGGTA.........................................................................	24	1	7.00	5.00	0.00	2.00	0.00
...................................AAATAGCAGCTGGTAATTCTGGG..........................................................................	23	1	6.00	5.00	0.00	1.00	0.00
...................................AAATATCAGCTAGTAATTCTGGG..........................................................................	23	1	6.00	3.00	0.00	2.00	1.00
...................................AAATGTCAGCTGGTAATTCTGGG..........................................................................	23	1	6.00	2.00	0.00	1.00	3.00
...................................AAATATCAGCTGGTAATTCTTGC..........................................................................	23	1	6.00	2.00	0.00	4.00	0.00
...................................AAATATCAGCTGGTACTTCTGGG..........................................................................	23	1	6.00	4.00	0.00	1.00	1.00
...................................AAATATCAGATGGTAATTCTGGG..........................................................................	23	1	6.00	0.00	0.00	0.00	6.00
...................................AAATATCAGCTGGGAATTCTTGG..........................................................................	23	1	6.00	4.00	0.00	2.00	0.00
...................................AAATATCAGCTGGCAATTCTGGGT.........................................................................	24	1	6.00	3.00	0.00	0.00	3.00
......................................TATCAGCTGGTAATTCTGGG..........................................................................	20	1	6.00	4.00	0.00	0.00	2.00
...................................AAATATCAGCTGGTAAGTCTGGG..........................................................................	23	1	6.00	3.00	0.00	3.00	0.00
...................................AAATATCAGCTGATAATTCTGGG..........................................................................	23	1	6.00	3.00	0.00	2.00	1.00
...................................AAATATCATCTGGTAATTCTGTG..........................................................................	23	1	6.00	5.00	1.00	0.00	0.00
...................................AACTATCAGCTGGTAATTCTGGG..........................................................................	23	1	6.00	2.00	0.00	1.00	3.00
...................................AAGTATCAGCTGGTAATTCTGGG..........................................................................	23	1	6.00	3.00	0.00	1.00	2.00
...................................AAATATCAGCTGGTAATTCTGGTT.........................................................................	24	1	6.00	2.00	1.00	2.00	1.00
................TCACCCGATTCTCAAAGGT.................................................................................................	19	1	6.00	1.00	0.00	5.00	0.00
...................................AAATATCAACTGGTAATTCTGGG..........................................................................	23	1	5.00	3.00	0.00	2.00	0.00
...................................AAATATCAGCTGGTAATTAT.............................................................................	20	1	5.00	0.00	0.00	0.00	5.00
...................................AAATATCAGCTGGTAATGCTGGG..........................................................................	23	1	5.00	4.00	0.00	1.00	0.00
...................................AAATATCAGCTGGTAACTCTGGG..........................................................................	23	1	5.00	4.00	0.00	1.00	0.00
...................................AAATATCAGCTGTTAATTCTTGG..........................................................................	23	1	5.00	5.00	0.00	0.00	0.00
.....................................ATATCAGCTGGTAATTCT.............................................................................	18	1	5.00	1.00	0.00	1.00	3.00
..................................CAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	5.00	2.00	0.00	1.00	2.00
...................................AAATATTAGCTGGTAATTCTGGG..........................................................................	23	1	5.00	3.00	0.00	1.00	1.00
...................................AAATCTCAGCTGGTAATTCTGGG..........................................................................	23	1	5.00	1.00	0.00	1.00	3.00
...................................AAATATCAGCTGGCAATTCTTGG..........................................................................	23	1	5.00	4.00	0.00	0.00	1.00
.....................................ATATCAGCTGGTAATTCTTGG..........................................................................	21	1	5.00	3.00	0.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGC.........................................................................	24	1	5.00	0.00	1.00	3.00	1.00
...................................AAATATCAGCTCGTAATTCTGAG..........................................................................	23	1	5.00	3.00	0.00	2.00	0.00
...................................AAATATCAGCTGCTAATTCTTGG..........................................................................	23	1	4.00	3.00	0.00	1.00	0.00
...................................AAATATCAGATGGTAATTCTGGGT.........................................................................	24	1	4.00	0.00	0.00	0.00	4.00
...................................AAATATCAGCTGGTAATTCTGGGAT........................................................................	25	1	4.00	0.00	0.00	1.00	3.00
...................................AAATATCAGCTGCTAATTCTGTG..........................................................................	23	1	4.00	2.00	0.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCCTGG..........................................................................	23	1	4.00	3.00	0.00	1.00	0.00
...................................AAATATCAGCTCGTAATTCTGGG..........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGTT........................................................................	25	1	4.00	0.00	0.00	3.00	1.00
...................................AAATATCAGCTGCTAATTCTGGG..........................................................................	23	1	4.00	1.00	0.00	2.00	1.00
...................................AAATATCAGATGGTAATTCTG............................................................................	21	1	4.00	0.00	0.00	0.00	4.00
...................................AAATATCAGCTGGTAATTCTGCT..........................................................................	23	1	4.00	1.00	0.00	3.00	0.00
...................................AAATATCAGCTGGGAATTCTGGGT.........................................................................	24	1	4.00	1.00	0.00	2.00	1.00
...................................AAATATCAGCTGGTAATTCTTGTA.........................................................................	24	1	4.00	3.00	0.00	1.00	0.00
...................................AAATATCAGCTGGTAATTATGGG..........................................................................	23	1	4.00	1.00	0.00	0.00	3.00

droAna3

------------CACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTGATTA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTCGAATTGCATTTTATCACCAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	798.00	152.00	339.00	32.00	275.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	523.00	74.00	350.00	78.00	21.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	237.00	30.00	131.00	15.00	61.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	117.00	53.00	22.00	27.00	15.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	106.00	9.00	50.00	15.00	32.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	97.00	62.00	16.00	6.00	13.00
...................................AAATATCAGCTGGTAATTCTTGG..........................................................................	23	1	53.00	1.00	3.00	1.00	48.00
...................................AAATATCAGCTGGTAATTCTGGT..........................................................................	23	1	29.00	6.00	11.00	6.00	6.00
...................................AAATATCAGCTGGTAATTCTGTG..........................................................................	23	1	28.00	0.00	1.00	2.00	25.00
...................................AAATATCAGCTGGTAATTCTGT...........................................................................	22	1	26.00	10.00	11.00	3.00	2.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	21.00	1.00	10.00	0.00	10.00
..........................................................AGCTATGCCTGATTA--TGAAACACT................................................	24	1	12.00	0.00	11.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTT............................................................................	21	1	11.00	3.00	3.00	0.00	5.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	11.00	8.00	3.00	0.00	0.00
.....................................ATATCAGCTGGTAATTCTGGG..........................................................................	21	1	10.00	3.00	1.00	0.00	6.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	9.00	1.00	0.00	0.00	8.00
....................................................................................CGGAATTTCAGTTGGTATCGA...........................	21	1	9.00	9.00	0.00	0.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCGAC..........................	22	1	9.00	7.00	2.00	0.00	0.00
...................................AAATATCAGATGGTAATTCT.............................................................................	20	1	6.00	2.00	4.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGTT........................................................................	25	1	6.00	3.00	2.00	1.00	0.00
................TCACCTGATTCTTAAAGGT.................................................................................................	19	1	6.00	0.00	2.00	2.00	2.00
...................................AAATATCATCTGGTAATTCTGGG..........................................................................	23	1	6.00	1.00	4.00	0.00	1.00
....................................AATATCAGCTGGTAATTCTGGG..........................................................................	22	1	6.00	2.00	4.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGCG..........................................................................	23	1	6.00	0.00	0.00	0.00	6.00
...................................AAATATCATCTGGTAATTCT.............................................................................	20	1	5.00	0.00	5.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTCGG..........................................................................	23	1	5.00	2.00	1.00	0.00	2.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	5.00	0.00	4.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTTGGA.........................................................................	24	1	5.00	1.00	0.00	0.00	4.00
...................................AAATATCATCTGGTAATTCTGG...........................................................................	22	1	5.00	0.00	4.00	0.00	1.00
....................................................................................CGGAATTTCAGTTGGTATCG............................	20	1	5.00	4.00	1.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTTG...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
...................................AAATATCAGCTGGTAATTCTAGG..........................................................................	23	1	5.00	2.00	3.00	0.00	0.00
...................................AAATATCAGATGGTAATTCTGGG..........................................................................	23	1	4.00	0.00	3.00	0.00	1.00
...................................AGATATCAGCTGGTAATTCTGGG..........................................................................	23	1	4.00	0.00	2.00	0.00	2.00
...................................AAATATCAGCTGGTAATTCTTTG..........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...................................AAATATCAGCTGGTAATTCTTGT..........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...................................AAATATCAGCTGGGAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	1.00	2.00
...................................AAATATCAGCTGGTAATTCTTGGT.........................................................................	24	1	3.00	0.00	2.00	0.00	1.00
...................................AAATATCAGCTAGTAATTCT.............................................................................	20	1	3.00	0.00	2.00	0.00	1.00
...................................AAATATCAGCTGGTAATTT..............................................................................	19	1	3.00	1.00	1.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGAT........................................................................	25	1	3.00	1.00	0.00	2.00	0.00
......................................TATCAGCTGGTAATTCTGGG..........................................................................	20	1	3.00	2.00	0.00	0.00	1.00
...................................AAATATCAGCTTGTAATTCTGGG..........................................................................	23	1	3.00	1.00	1.00	0.00	1.00
...................................AAATATCAGCTGGTAATTCTGGGAA........................................................................	25	1	3.00	3.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATCCTGGG..........................................................................	23	1	3.00	0.00	1.00	0.00	2.00
...................................AAATATCAGCTGGTAATTATG............................................................................	21	1	3.00	0.00	2.00	0.00	1.00
...................................AAATATCAGCTGCTAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	1.00	2.00
...................................AAATATCAGCTGGTCATTCTGGG..........................................................................	23	1	3.00	0.00	1.00	0.00	2.00
...................................AAATATCAGCTGGTCATTCT.............................................................................	20	1	3.00	0.00	0.00	3.00	0.00

dp4

gagagagagTGCCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCA-AGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA-	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	3884.00	138.00	3601.00	89.00	56.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	471.00	54.00	265.00	12.00	140.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	302.00	80.00	183.00	27.00	12.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	243.00	114.00	63.00	63.00	3.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	207.00	23.00	149.00	10.00	25.00
..............CCTCA--CGATTCTCAAAGGT.................................................................................................	19	1	114.00	1.00	113.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	113.00	38.00	54.00	15.00	6.00
...................................AAATATCAGCTGGTAATTCTTGG..........................................................................	23	1	91.00	0.00	89.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCTGTG..........................................................................	23	1	50.00	0.00	48.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCTGGT..........................................................................	23	1	36.00	7.00	21.00	6.00	2.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	29.00	1.00	28.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	24.00	2.00	14.00	5.00	3.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	23.00	0.00	5.00	3.00	15.00
...................................AAATATCAGCTGGTAATTCTGCG..........................................................................	23	1	21.00	0.00	20.00	1.00	0.00
...................................AAATATCAGCTGGGAATTCTGGG..........................................................................	23	1	19.00	0.00	16.00	0.00	3.00
...................................AAATATCAGCTGGCAATTCTGGG..........................................................................	23	1	17.00	0.00	17.00	0.00	0.00
...................................AAATATCAGCTGGTCATTCTGGG..........................................................................	23	1	17.00	0.00	17.00	0.00	0.00
....................................AATATCAGCTGGTAATTCTGGG..........................................................................	22	1	16.00	0.00	14.00	1.00	1.00
....................................................................................CGGAATTTCAGTTGGTATCGAC..........................	22	1	15.00	10.00	4.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTGT...........................................................................	22	1	13.00	3.00	4.00	2.00	4.00
...................................AAATATCAGCTGGTGATTCTGGG..........................................................................	23	1	13.00	0.00	13.00	0.00	0.00
...................................AAATATCAGCTGGTTATTCTGGG..........................................................................	23	1	12.00	0.00	12.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGTT........................................................................	25	1	11.00	3.00	2.00	0.00	6.00
....................................................................................CGGAATTTCAGTTGGTATCGA...........................	21	1	10.00	7.00	3.00	0.00	0.00
...................................AAATATCAGCTAGTAATTCTGGG..........................................................................	23	1	10.00	0.00	10.00	0.00	0.00
...................................AAATATAAGCTGGTAATTCTGGG..........................................................................	23	1	10.00	0.00	10.00	0.00	0.00
...................................AAATAGCAGCTGGTAATTCTGGG..........................................................................	23	1	9.00	0.00	9.00	0.00	0.00
...................................AAATATCAGCTGGTAATGCTGGG..........................................................................	23	1	8.00	0.00	8.00	0.00	0.00
...................................AAATATCAGATGGTAATTCTGGG..........................................................................	23	1	8.00	0.00	8.00	0.00	0.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	8.00	2.00	3.00	3.00	0.00
...................................AAATATCAGCTGGTAAGTCTGGG..........................................................................	23	1	8.00	0.00	8.00	0.00	0.00
...................................AAATATCAGCTGGTACTTCTGGG..........................................................................	23	1	7.00	0.00	7.00	0.00	0.00
...................................AAATATCAGCTGGTAATTATGGG..........................................................................	23	1	7.00	0.00	7.00	0.00	0.00
...................................AAATATCAGCTGGTAATTTTGGG..........................................................................	23	1	7.00	0.00	7.00	0.00	0.00
......................................TATCAGCTGGTAATTCTGGG..........................................................................	20	1	6.00	0.00	6.00	0.00	0.00
...................................AAATGTCAGCTGGTAATTCTGGG..........................................................................	23	1	6.00	0.00	5.00	1.00	0.00
...................................AGATATCAGCTGGTAATTCTGGG..........................................................................	23	1	6.00	0.00	6.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTG............................................................................	21	1	6.00	0.00	5.00	0.00	1.00
...................................AAATATCAGCTGGTAATTCTTTG..........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGAG..........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
...................................AAATATCCGCTGGTAATTCTGGG..........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
...................................AAATATCAGTTGGTAATTCTGGG..........................................................................	23	1	5.00	0.00	4.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTAGG..........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGC.........................................................................	24	1	5.00	0.00	3.00	1.00	1.00
.....................................ATATCAGCTGGTAATTCTGGG..........................................................................	21	1	5.00	0.00	5.00	0.00	0.00
...................................AAATATCAGCTGGCAATTCT.............................................................................	20	1	5.00	3.00	1.00	1.00	0.00
...................................AAATATCAGCTGGTAATCCTGGG..........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
...................................ACATATCAGCTGGTAATTCTGGG..........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
...................................AAATATCAGCTGGTCATTCTTGG..........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGCT..........................................................................	23	1	4.00	0.00	3.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTGGC..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
....................................AATATCAGCTGGTAATTCTGGGA.........................................................................	23	1	4.00	1.00	2.00	0.00	1.00
...................................AAATATCAGCTGGTATTTCTGGG..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
...................................AAATATCAGCTGGTGATTCTGTG..........................................................................	23	1	4.00	0.00	3.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCCGGG..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
...................................AAATATTAGCTGGTAATTCTGGG..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
...................................AAATATCAGCTGGTCATTCTG............................................................................	21	1	4.00	0.00	4.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTCGG..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
...................................AAATATCAGCTGATAATTCTGGG..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
...................................AAATATCAGCTGGTAGTTCTGGG..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
...................................AAATATCAGCTTGTAATTCTGGG..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
...................................AAATCTCAGCTGGTAATTCTGGG..........................................................................	23	1	4.00	0.00	3.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTT............................................................................	21	1	4.00	2.00	2.00	0.00	0.00
...................................AAACATCAGCTGGTAATTCTGGG..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
...................................AAATATCTGCTGGTAATTCTGGG..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTCTG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................ATATATCAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................AAATAACAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................AAAGATCAGCTGGTTATTCTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................AAATATTAGCTGGTAATTCTG............................................................................	21	1	3.00	0.00	2.00	1.00	0.00
...................................AAATATCAGCAGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTGGAAATTCTGGG..........................................................................	23	1	3.00	0.00	2.00	1.00	0.00
...................................AAATATCAGATGGTAATTCTG............................................................................	21	1	3.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTCGTAATTCTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTGGGT.........................................................................	24	1	3.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGTT..........................................................................	23	1	3.00	2.00	1.00	0.00	0.00
..................................CAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	3.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTTGTAATTCTGTG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.............................................TGGTAATTCTxAGAGCTAA....................................................................	18	1	3.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTGGTAATTGTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................AAATAGCAGCTGGCAATTCTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
..............CCTCA--CGATTCTCACAGGT.................................................................................................	19	1	3.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTCCG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCGGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................GAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	1.00	2.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTTG...........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
...................................AAGTATCAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................AAATTTCAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00

droPer1

gagagagagTGCCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCA-AGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA-	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	1869.00	41.00	818.00	59.00	51.00	900.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	845.00	17.00	75.00	9.00	15.00	729.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	234.00	56.00	22.00	48.00	108.00	0.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	203.00	8.00	33.00	10.00	9.00	143.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	178.00	23.00	27.00	15.00	19.00	94.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	155.00	1.00	0.00	2.00	1.00	151.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	124.00	28.00	19.00	7.00	14.00	56.00
..............CCTCA--CGATTCTCAAAGGT.................................................................................................	19	1	66.00	1.00	56.00	1.00	7.00	1.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	59.00	1.00	5.00	0.00	2.00	51.00
...................................AAATATCAGCTGGTAATTCTGGGC.........................................................................	24	1	34.00	0.00	1.00	0.00	0.00	33.00
...................................AAATATCAGCTGGTAATTCTGGT..........................................................................	23	1	33.00	2.00	8.00	4.00	0.00	19.00
...................................AAATATCAGCTGGTAATTCTGGGG.........................................................................	24	1	21.00	0.00	1.00	0.00	0.00	20.00
...................................AAATATCAGCTGGTAATTCTTGG..........................................................................	23	1	16.00	0.00	15.00	0.00	1.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCGAC..........................	22	1	16.00	9.00	2.00	2.00	3.00	0.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	15.00	0.00	11.00	0.00	0.00	4.00
....................................................................................CGGAATTTCAGTTGGTATCGA...........................	21	1	14.00	14.00	0.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGT...........................................................................	22	1	14.00	3.00	2.00	2.00	2.00	5.00
...................................AAATATCAGCTGGTAATTCTGA...........................................................................	22	1	13.00	0.00	1.00	0.00	0.00	12.00
....................................................................................CGGAATTTCAGTTGGTATCG............................	20	1	13.00	2.00	1.00	0.00	1.00	9.00
...................................AAATATCAGCTGTTAATTCTGGG..........................................................................	23	1	11.00	0.00	0.00	0.00	0.00	11.00
...................................AAATATCAGCTGGGAATTCTGGG..........................................................................	23	1	11.00	1.00	2.00	0.00	1.00	7.00
...................................AAATATCAGCTGGGAATTCTG............................................................................	21	1	10.00	0.00	0.00	0.00	0.00	10.00
......................................TATCAGCTGGTAATTCTG............................................................................	18	1	9.00	0.00	0.00	1.00	0.00	8.00
..........................................................AGCTAAGCA-AGATA--TGAAACACT................................................	23	1	9.00	0.00	2.00	0.00	1.00	6.00
...................................AAATATCAGCTGGTAATTCTGGC..........................................................................	23	1	7.00	0.00	1.00	0.00	0.00	6.00
......................................TATCAGCTGGTAATTCTGGG..........................................................................	20	1	7.00	0.00	6.00	1.00	0.00	0.00
...................................AAATATCAGCTGTTAATTC..............................................................................	19	1	7.00	0.00	0.00	0.00	0.00	7.00
.............................................TGGTAATTCTxAGAGCTAA....................................................................	18	1	6.00	0.00	1.00	0.00	5.00	0.00
.....................................ATATCAGCTGGTAATTCTG............................................................................	19	1	6.00	0.00	0.00	0.00	0.00	6.00
....................................AATATCAGCTGGTAATTCTGGG..........................................................................	22	1	5.00	1.00	3.00	0.00	0.00	1.00
...................................AAATATCAGCTGGTAATTCTGGGTT........................................................................	25	1	5.00	1.00	1.00	1.00	0.00	2.00
...................................AAATATCAGCTGGTAATTCTGTG..........................................................................	23	1	5.00	0.00	5.00	0.00	0.00	0.00
...................................AAATATCAGCTGTTAATTCTGGGT.........................................................................	24	1	5.00	0.00	0.00	0.00	1.00	4.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	5.00	2.00	2.00	1.00	0.00	0.00
.....................................ATATCAGCTGGTAATTCTGGG..........................................................................	21	1	4.00	0.00	1.00	0.00	0.00	3.00
....................................AATATCAGCTGGTAATTCTGGGA.........................................................................	23	1	4.00	0.00	0.00	1.00	1.00	2.00
...................................AAATATCAGCTGGTCATTCTGGG..........................................................................	23	1	4.00	0.00	3.00	0.00	1.00	0.00
...................................AAATATCAGCTGGGAATTC..............................................................................	19	1	4.00	0.00	0.00	0.00	0.00	4.00
...................................AAATATCAGCTGTTAATTCTGG...........................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
...................................AAATATCAGCTGGTAGTTCTGGG..........................................................................	23	1	4.00	2.00	2.00	0.00	0.00	0.00
...................................AAATATCATCTGGTAATTCTG............................................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
...................................AAATATCAGCTGGCAATTCTGGG..........................................................................	23	1	3.00	0.00	1.00	0.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCCG............................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAATTATGGG..........................................................................	23	1	3.00	0.00	2.00	1.00	0.00	0.00
...................................AAATATCAACTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
...................................AAATATCAGCTGGAAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
...................................AAATATCAGCTGGTCATTCTG............................................................................	21	1	3.00	0.00	2.00	0.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTCGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTTATTCTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
...................................AAATATCAGCCGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	1.00	0.00	0.00	2.00
...................................AAATATCAGCTGGGGATTCTGGG..........................................................................	23	1	3.00	0.00	2.00	0.00	1.00	0.00
...................................AAATATCAGCTGATAATTCTG............................................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
...................................AGATATCAGCTGGTAATTCTG............................................................................	21	1	3.00	0.00	1.00	0.00	0.00	2.00
...................................AAATATCAGCTGGGAATTCT.............................................................................	20	1	3.00	1.00	1.00	0.00	1.00	0.00

droWil1

GAGTGCGAGTGGAGCCTAACG-AATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAGATATTTGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	25275.00	87.00	22101.00	1068.00	2019.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	2071.00	20.00	673.00	167.00	1211.00
...............CTAACG-AATTCTCAAAGGT.................................................................................................	19	1	1032.00	4.00	1005.00	6.00	17.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	1020.00	57.00	751.00	50.00	162.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	875.00	19.00	554.00	61.00	241.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	803.00	30.00	589.00	38.00	146.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	687.00	65.00	355.00	232.00	35.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	353.00	1.00	1.00	0.00	351.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	299.00	1.00	285.00	9.00	4.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	192.00	0.00	70.00	9.00	113.00
...................................AAATATCAGCTGGTAATTCTGGT..........................................................................	23	1	87.00	8.00	49.00	14.00	16.00
...................................AAATATCAGCTGGCAATTCTGGG..........................................................................	23	1	76.00	0.00	71.00	4.00	1.00
....................................AATATCAGCTGGTAATTCTGGG..........................................................................	22	1	66.00	0.00	59.00	5.00	2.00
...................................AAATATCAGCTGGTAATTCTTGG..........................................................................	23	1	62.00	0.00	61.00	1.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCGAC..........................	22	1	58.00	5.00	51.00	2.00	0.00
...................................AAATATCATCTGGTAATTCTGGG..........................................................................	23	1	57.00	0.00	51.00	2.00	4.00
...................................AAATATCAGCTGGTAATTCTGGGG.........................................................................	24	1	51.00	1.00	7.00	3.00	40.00
...................................AAATATCAGCTGGTAATTCTGTG..........................................................................	23	1	42.00	0.00	38.00	4.00	0.00
...................................AAATATCAGCTGGGAATTCTGGG..........................................................................	23	1	42.00	0.00	13.00	5.00	24.00
...................................AAATATCAGCTGGTAATTCTGGGC.........................................................................	24	1	39.00	0.00	5.00	1.00	33.00
...................................AAATATCAGCTTGTAATTCTGGG..........................................................................	23	1	38.00	0.00	33.00	1.00	4.00
...................................AAATATCAGATGGTAATTCTGGG..........................................................................	23	1	38.00	0.00	36.00	2.00	0.00
...................................AAATATCAGCTGGTAATTATGGG..........................................................................	23	1	37.00	0.00	29.00	8.00	0.00
...................................AAATATCAGCTGTTAATTCTGGG..........................................................................	23	1	36.00	0.00	18.00	0.00	18.00
...................................AAATATCAGCCGGTAATTCTGGG..........................................................................	23	1	31.00	0.00	25.00	3.00	3.00
...................................AAATATCAGCTGGTAATTCTGGGAA........................................................................	25	1	30.00	1.00	26.00	0.00	3.00
...................................AAATATCAGCTGGTAATTCTGGGTT........................................................................	25	1	30.00	1.00	13.00	2.00	14.00
...................................AAATATCAGCTGGTAATTCCGGG..........................................................................	23	1	29.00	0.00	25.00	1.00	3.00
...................................AAATATCAGCTGGAAATTCTGGG..........................................................................	23	1	29.00	1.00	21.00	3.00	4.00
................TAACG-AATTCTCAAAGGT.................................................................................................	18	1	28.00	0.00	28.00	0.00	0.00
...................................AAATACCAGCTGGTAATTCTGGG..........................................................................	23	1	27.00	0.00	25.00	1.00	1.00
.....................................ATATCAGCTGGTAATTCTGGG..........................................................................	21	1	26.00	1.00	24.00	0.00	1.00
...................................AAATATCAGCTGGTAATCCTGGG..........................................................................	23	1	26.00	0.00	24.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCTGGC..........................................................................	23	1	26.00	0.00	17.00	1.00	8.00
...................................AAATATCAGCTGGTAATTCTAGG..........................................................................	23	1	25.00	0.00	25.00	0.00	0.00
...................................AAATATAAGCTGGTAATTCTGGG..........................................................................	23	1	24.00	0.00	23.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTCGG..........................................................................	23	1	24.00	1.00	23.00	0.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCGA...........................	21	1	23.00	7.00	14.00	1.00	1.00
...................................AAATATCAGCTGGTAATTCTGCG..........................................................................	23	1	22.00	2.00	19.00	1.00	0.00
...................................ACATATCAGCTGGTAATTCTGGG..........................................................................	23	1	22.00	0.00	21.00	1.00	0.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	21.00	1.00	19.00	1.00	0.00
...................................AAACATCAGCTGGTAATTCTGGG..........................................................................	23	1	21.00	0.00	18.00	3.00	0.00
...................................AAATATCAGCTGGTAATTCTGT...........................................................................	22	1	21.00	1.00	3.00	0.00	17.00
...................................AAATATCAGCTGGTAACTCTGGG..........................................................................	23	1	20.00	0.00	16.00	4.00	0.00
...................................AAATATCGGCTGGTAATTCTGGG..........................................................................	23	1	20.00	1.00	19.00	0.00	0.00
...................................AAATATCAGCTGGTxATTCTGGG..........................................................................	22	1	19.00	0.00	18.00	1.00	0.00
..............CCTAACG-AATTCTCAAAGGT.................................................................................................	20	1	19.00	1.00	18.00	0.00	0.00
...................................GAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	19.00	0.00	14.00	2.00	3.00
...................................AAATATCAGCTGCTAATTCTGGG..........................................................................	23	1	18.00	0.00	11.00	2.00	5.00
...................................AAATATCAGCTGGGAATTCTG............................................................................	21	1	18.00	0.00	1.00	1.00	16.00
...................................AAATCTCAGCTGGTAATTCTGGG..........................................................................	23	1	17.00	0.00	15.00	2.00	0.00
...................................AAATATCAGCTGATAATTCTGGG..........................................................................	23	1	16.00	0.00	10.00	1.00	5.00
..................................TAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	16.00	0.00	11.00	2.00	3.00
...................................AAATATCAGCTxGTAATTCTGGG..........................................................................	22	1	15.00	0.00	12.00	0.00	3.00
...................................AAATATCCGCTGGTAATTCTGGG..........................................................................	23	1	15.00	0.00	14.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTGAG..........................................................................	23	1	15.00	0.00	12.00	3.00	0.00
...................................AAATATCACCTGGTAATTCTGGG..........................................................................	23	1	15.00	1.00	14.00	0.00	0.00
...................................AAATATCAGCTGGTGATTCTGGG..........................................................................	23	1	14.00	0.00	14.00	0.00	0.00
..................................CAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	14.00	0.00	14.00	0.00	0.00
...................................AACTATCAGCTGGTAATTCTGGG..........................................................................	23	1	14.00	0.00	14.00	0.00	0.00
...................................AAATATCAACTGGTAATTCTGGG..........................................................................	23	1	13.00	0.00	11.00	1.00	1.00
...................................AAATATCAGCTGGTAATTCTGA...........................................................................	22	1	13.00	0.00	2.00	0.00	11.00
...................................AAATATCAGCTCGTAATTCTGGG..........................................................................	23	1	13.00	0.00	11.00	1.00	1.00
...................................AAATGTCAGCTGGTAATTCTGGG..........................................................................	23	1	13.00	0.00	11.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCTA............................................................................	21	1	12.00	0.00	11.00	1.00	0.00
...................................AAATATCAGCTAGTAATTCTGGG..........................................................................	23	1	12.00	0.00	8.00	2.00	2.00
...................................AAAAATCAGCTGGTAATTCTGGG..........................................................................	23	1	12.00	0.00	12.00	0.00	0.00
...................................AAGTATCAGCTGGTAATTCTGGG..........................................................................	23	1	12.00	0.00	12.00	0.00	0.00
...................................AGATATCAGCTGGTAATTCTGGG..........................................................................	23	1	12.00	0.00	11.00	1.00	0.00
...................................AAATATCAGCTGGTAGTTCTGGG..........................................................................	23	1	12.00	0.00	12.00	0.00	0.00
.....................................AAATCAGCTGGTAATTCTGGG..........................................................................	21	1	11.00	1.00	10.00	0.00	0.00
...................................AAATATTAGCTGGTAATTCTGGG..........................................................................	23	1	11.00	0.00	10.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGAT........................................................................	25	1	10.00	2.00	2.00	1.00	5.00
...................................AAATATCAGTTGGTAATTCTGGG..........................................................................	23	1	9.00	0.00	7.00	2.00	0.00
...................................AAATATCAGCTGGTACTTCTGGG..........................................................................	23	1	9.00	0.00	8.00	1.00	0.00
...................................CAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	9.00	0.00	4.00	5.00	0.00
...................................AAATATCAGCTGGTAATTCTGGAA.........................................................................	24	1	9.00	0.00	5.00	2.00	2.00
....................................AATATCAGCTGGTAATTCTGGGA.........................................................................	23	1	8.00	0.00	3.00	0.00	5.00
....................................................................................CGGAATTTCAGTTGGTATCG............................	20	1	8.00	0.00	1.00	0.00	7.00
..................................TAAATATCAGCTGGTAATTCTG............................................................................	22	1	7.00	0.00	0.00	0.00	7.00
...................................AAATATCAGCTGGTAATTTTGGG..........................................................................	23	1	7.00	0.00	2.00	4.00	1.00
......................................TATCAGCTGGTAATTCTGGG..........................................................................	20	1	7.00	1.00	5.00	0.00	1.00
...................................AAATATCAGCTGGTCATTCTGGG..........................................................................	23	1	7.00	0.00	6.00	1.00	0.00
....................................AATATCAGCTGGTAATTCTG............................................................................	20	1	7.00	0.00	3.00	1.00	3.00
...............CTAACG-AATTCTCAAAGG..................................................................................................	18	1	7.00	0.00	7.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTGG...........................................................................	22	1	6.00	0.00	0.00	2.00	4.00
..................................TAAATATCAGCTGGTAATTCT.............................................................................	21	1	6.00	0.00	2.00	4.00	0.00
...................................AAATATCAGCTGTTAATTCTGG...........................................................................	22	1	6.00	0.00	1.00	0.00	5.00
...................................AAATATCAGCTGGTAATTCTGGAAA........................................................................	25	1	5.00	0.00	5.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGC...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
...................................AAATATCAGATGGTAATTCT.............................................................................	20	1	5.00	0.00	2.00	3.00	0.00
...................................AAATATCAGCTGGTAATTCTT............................................................................	21	1	5.00	0.00	2.00	2.00	1.00
...................................AAATATCAGCTxGTAATTCTGG...........................................................................	21	1	5.00	0.00	1.00	0.00	4.00
...................................AAATATCAGCTGGGAATTC..............................................................................	19	1	5.00	0.00	0.00	0.00	5.00
...................................AAATATCAGCTGTTAATTC..............................................................................	19	1	5.00	0.00	0.00	0.00	5.00
...................................AAATATCAGCGGGTAATTCTGGG..........................................................................	23	1	5.00	0.00	4.00	0.00	1.00
...................................TAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	5.00	0.00	3.00	1.00	1.00
...................................AAATATCAGCTGGTAATTCTGGTA.........................................................................	24	1	5.00	0.00	5.00	0.00	0.00
......................................AATCAGCTGGTAATTCTGGG..........................................................................	20	1	4.00	0.00	2.00	2.00	0.00
...................................AAATATCAGCAGGTAATTCTGGG..........................................................................	23	1	4.00	0.00	4.00	0.00	0.00
...................................AAATATCATCTGGTAATTCTGGGA.........................................................................	24	1	4.00	0.00	4.00	0.00	0.00

droVir3

GTACAAGA-TGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACC--	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	2378.00	243.00	89.00	952.00	894.00	200.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	596.00	29.00	3.00	25.00	370.00	169.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	555.00	235.00	16.00	105.00	159.00	40.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	335.00	111.00	9.00	108.00	98.00	9.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	255.00	23.00	5.00	72.00	124.00	31.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	240.00	149.00	57.00	14.00	16.00	4.00
...................................AAATATCAGCTGGTAATTCTGGGC.........................................................................	24	1	168.00	2.00	0.00	3.00	160.00	3.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	161.00	2.00	1.00	2.00	109.00	47.00
...................................AAATATCAGCTGGTAATTCTTGG..........................................................................	23	1	98.00	0.00	3.00	95.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	97.00	6.00	4.00	9.00	55.00	23.00
...................................AAATATCAGCTGGTAATTCTGTG..........................................................................	23	1	64.00	3.00	0.00	61.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGT..........................................................................	23	1	58.00	11.00	3.00	35.00	9.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGG.........................................................................	24	1	38.00	0.00	0.00	1.00	29.00	8.00
...................................AAATATCAGCTGGTAATTCTGGGTT........................................................................	25	1	34.00	3.00	0.00	3.00	26.00	2.00
...................................AAATATCAGCTGGTAATTCTC............................................................................	21	1	29.00	0.00	0.00	0.00	26.00	3.00
....................................................................................CGGAATTTCAGTTGGTATCGAC..........................	22	1	22.00	10.00	0.00	12.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTGGG..........................................................................	23	1	20.00	0.00	0.00	5.00	9.00	6.00
...................................AAATATCAGCTGGTAATTCTGGGAA........................................................................	25	1	18.00	8.00	0.00	7.00	2.00	1.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	18.00	13.00	0.00	4.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGAT........................................................................	25	1	17.00	8.00	1.00	1.00	6.00	1.00
...................................AAATATCAGCTGGTAATTCTGGGTC........................................................................	25	1	17.00	1.00	0.00	1.00	12.00	3.00
...................................AAATATCAGCTGGTAATTCTGT...........................................................................	22	1	16.00	3.00	1.00	5.00	4.00	3.00
...................................AAATATCAGCTGGTAATTCTTGT..........................................................................	23	1	13.00	0.00	0.00	13.00	0.00	0.00
...................................AAATATCAGCTTGTAATTCTGGG..........................................................................	23	1	13.00	0.00	0.00	11.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGCC........................................................................	25	1	13.00	0.00	0.00	0.00	13.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCGA...........................	21	1	11.00	6.00	0.00	5.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGA...........................................................................	22	1	10.00	0.00	0.00	0.00	7.00	3.00
.....................................ATATCAGCTGGTAATTCTGGG..........................................................................	21	1	9.00	0.00	0.00	8.00	0.00	1.00
...................................AAATATCAGCTGTTAATTCTGGG..........................................................................	23	1	9.00	0.00	0.00	2.00	5.00	2.00
...................................AAATATCAGCTGGTAATTCTGCG..........................................................................	23	1	9.00	1.00	2.00	6.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTTTG..........................................................................	23	1	9.00	0.00	0.00	9.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGTGT.........................................................................	24	1	8.00	2.00	0.00	6.00	0.00	0.00
................TCACCCGATTCTCAAAGGT.................................................................................................	19	1	8.00	2.00	1.00	5.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGAAA.......................................................................	26	1	8.00	4.00	0.00	3.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTTG...........................................................................	22	1	7.00	0.00	0.00	7.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTTGGA.........................................................................	24	1	7.00	0.00	0.00	7.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTG............................................................................	21	1	7.00	0.00	0.00	0.00	3.00	4.00
....................................AATATCAGCTGGTAATTCTGGGA.........................................................................	23	1	6.00	1.00	0.00	0.00	5.00	0.00
...................................AAATATCAGCTGGCAATTCTGGG..........................................................................	23	1	6.00	2.00	0.00	2.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCTGGAA.........................................................................	24	1	6.00	1.00	0.00	1.00	2.00	2.00
....................................AATATCAGCTGGTAATTCTGGG..........................................................................	22	1	6.00	3.00	0.00	2.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCCGGG..........................................................................	23	1	6.00	1.00	0.00	2.00	1.00	2.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	6.00	0.00	0.00	6.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGTGA.........................................................................	24	1	5.00	1.00	0.00	4.00	0.00	0.00
...................................AAATATCAGCTGGTCATTCTGGG..........................................................................	23	1	5.00	1.00	1.00	3.00	0.00	0.00
....................................................................................CGGAATTTCAGTTGGTATCG............................	20	1	5.00	2.00	0.00	0.00	1.00	2.00
...................................AAATATCAGCTGGGAATTCTGGGA.........................................................................	24	1	5.00	2.00	0.00	0.00	3.00	0.00
...................................AAATATCAGCTTGTAATTCTTGG..........................................................................	23	1	5.00	0.00	0.00	5.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGAG..........................................................................	23	1	4.00	0.00	1.00	3.00	0.00	0.00
...............CTCACCCGATTCTCAAAGGT.................................................................................................	20	1	4.00	3.00	0.00	1.00	0.00	0.00
...................................AAATATCAGCTGGTAATCCTGGG..........................................................................	23	1	4.00	3.00	0.00	1.00	0.00	0.00
...................................AAATATCAGCCGGTAATTCTGGG..........................................................................	23	1	4.00	0.00	0.00	2.00	1.00	1.00
...................................AAATATCAGCTGGTAATTCTCGG..........................................................................	23	1	4.00	0.00	1.00	3.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGTT..........................................................................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTGG...........................................................................	22	1	4.00	0.00	0.00	0.00	3.00	1.00
...................................AAATATCAGCTGGTAATTCTGGC..........................................................................	23	1	4.00	1.00	0.00	2.00	0.00	1.00
...................................AAATATCAGCTGGTAATTCTTGC..........................................................................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTGGGC.........................................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
...................................AAATATCAGCTGGTAATTCTGGAT.........................................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
...................................AAATATCAGCTGGTAATTCTGGTT.........................................................................	24	1	4.00	0.00	0.00	2.00	2.00	0.00
...................................AAATATCAGCTGGTAATTCTGCT..........................................................................	23	1	4.00	0.00	1.00	3.00	0.00	0.00
...................................AAATATCAGCTGGCAATTCTGGGA.........................................................................	24	1	3.00	0.00	0.00	2.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGCT........................................................................	25	1	3.00	0.00	0.00	0.00	3.00	0.00
...................................AAATATCATCTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	1.00	2.00	0.00	0.00
...................................GAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTAGTAATTCTGGG..........................................................................	23	1	3.00	1.00	0.00	2.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTAGG..........................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
...................................AAATATAAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
...................................AAATATCAGCTGGTAAGTCTGGG..........................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGTA........................................................................	25	1	3.00	0.00	1.00	0.00	2.00	0.00
....................................AATATCAGCTGGTAATTCTGGGT.........................................................................	23	1	3.00	1.00	0.00	1.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTGCGA.........................................................................	24	1	3.00	0.00	0.00	3.00	0.00	0.00
...................................AAATATCAGCTGGGAATTCTGGGT.........................................................................	24	1	3.00	0.00	0.00	2.00	0.00	1.00
...................................AAATATCAGCTGGCAATTCT.............................................................................	20	1	3.00	2.00	1.00	0.00	0.00	0.00

droMoj3

GAA-CCAGCTGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCC-CAATA--TGAAACACTCGGAATTTCAGTTGGTATATACTTTTTTGAATTGCATTTTATCACCA-	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	8382.00	457.00	117.00	55.00	7753.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	618.00	357.00	38.00	25.00	198.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	437.00	168.00	33.00	20.00	216.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	329.00	201.00	71.00	39.00	18.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	200.00	57.00	11.00	3.00	129.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	184.00	23.00	9.00	6.00	146.00
...................................AAATATCAGCTGGTAATTCTTGG..........................................................................	23	1	114.00	1.00	2.00	5.00	106.00
...................................AAATATCAGCTGGTAATTCTGTG..........................................................................	23	1	86.00	1.00	3.00	3.00	79.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	58.00	2.00	0.00	0.00	56.00
...................................AAATATCAGCTGGTCATTCTGGG..........................................................................	23	1	58.00	0.00	0.00	3.00	55.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	40.00	21.00	2.00	0.00	17.00
...................................AAATATCAGCTGGCAATTCTGGG..........................................................................	23	1	39.00	1.00	2.00	1.00	35.00
...................................AAATATCAGCTGGTAATTCTGGT..........................................................................	23	1	38.00	13.00	4.00	5.00	16.00
................TCACCCGATTCTCAAAGGT.................................................................................................	19	1	34.00	6.00	1.00	1.00	26.00
...................................AAATATCAGCTGGGAATTCTGGG..........................................................................	23	1	33.00	0.00	0.00	0.00	33.00
....................................AATATCAGCTGGTAATTCTGGGA.........................................................................	23	1	25.00	24.00	0.00	0.00	1.00
...................................AAATATCAGCTGGTGATTCTGGG..........................................................................	23	1	25.00	1.00	0.00	0.00	24.00
...................................AAATATCAGATGGTAATTCTGGG..........................................................................	23	1	24.00	0.00	0.00	0.00	24.00
...................................AAATATCAGCTGGTAATTCTAGG..........................................................................	23	1	19.00	0.00	0.00	0.00	19.00
...................................AAATATCAGCTGGTAATTCTGGGAA........................................................................	25	1	18.00	15.00	0.00	1.00	2.00
...................................AAATATCAGCTGGTAATTCCGGG..........................................................................	23	1	17.00	1.00	1.00	0.00	15.00
...................................AAATATCAGCTGGTAATTCTGT...........................................................................	22	1	17.00	10.00	2.00	4.00	1.00
...................................AAATATCAGCTGGTTATTCTGGG..........................................................................	23	1	16.00	0.00	0.00	2.00	14.00
...................................AAACATCAGCTGGTAATTCTGGG..........................................................................	23	1	15.00	0.00	1.00	0.00	14.00
...................................AGATATCAGCTGGTAATTCTGGG..........................................................................	23	1	15.00	1.00	1.00	1.00	12.00
...................................AAATATCAGCTGGTAATTATGGG..........................................................................	23	1	14.00	0.00	1.00	0.00	13.00
...................................GAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	14.00	0.00	4.00	0.00	10.00
..................................CAAATATCAGCTGGTAATTCTGGG..........................................................................	24	1	13.00	2.00	0.00	0.00	11.00
...................................AAATATAAGCTGGTAATTCTGGG..........................................................................	23	1	13.00	0.00	0.00	0.00	13.00
...................................AAATATCAGCTGGTACTTCTGGG..........................................................................	23	1	13.00	0.00	0.00	2.00	11.00
...................................AAATATCAGCTGGTAATTCTCGG..........................................................................	23	1	13.00	2.00	1.00	0.00	10.00
...................................AAATATCAGCTGGTAATTCTGCG..........................................................................	23	1	13.00	0.00	1.00	1.00	11.00
...................................AAATATCAGCTAGTAATTCTGGG..........................................................................	23	1	11.00	0.00	0.00	0.00	11.00
....................................................................................CGGAATTTCAGTTGGTATATAC..........................	22	1	11.00	8.00	2.00	1.00	0.00
...................................AAATGTCAGCTGGTAATTCTGGG..........................................................................	23	1	11.00	0.00	0.00	0.00	11.00
...................................AAATATCAGCTGGTAAGTCTGGG..........................................................................	23	1	11.00	0.00	0.00	0.00	11.00
.....................................ATATCAGCTGGTAATTCTGGG..........................................................................	21	1	10.00	4.00	1.00	0.00	5.00
...................................AAATAGCAGCTGGTAATTCTGGG..........................................................................	23	1	10.00	0.00	0.00	0.00	10.00
...................................AAATATCAGCTGGTAATTCTGGGAT........................................................................	25	1	10.00	8.00	2.00	0.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGTT........................................................................	25	1	10.00	7.00	0.00	1.00	2.00
...................................AAGTATCAGCTGGTAATTCTGGG..........................................................................	23	1	9.00	0.00	0.00	0.00	9.00
...................................AAATATCAGCTGGAAATTCTGGG..........................................................................	23	1	9.00	0.00	1.00	0.00	8.00
...................................AAATATCAGCTGGTAATTCTGAG..........................................................................	23	1	9.00	0.00	0.00	0.00	9.00
...................................AAATATCAGCTGGTAATTCTGGGC.........................................................................	24	1	9.00	0.00	1.00	1.00	7.00
...................................AAATATCAGCTGGTAGTTCTGGG..........................................................................	23	1	9.00	1.00	0.00	0.00	8.00
...................................AAATATCAGCTGGTAACTCTGGG..........................................................................	23	1	9.00	0.00	0.00	0.00	9.00
...................................ACATATCAGCTGGTAATTCTGGG..........................................................................	23	1	9.00	0.00	1.00	0.00	8.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	9.00	1.00	2.00	0.00	6.00
...................................AAATATCCGCTGGTAATTCTGGG..........................................................................	23	1	8.00	1.00	1.00	0.00	6.00
...................................AAATATCAGCTGGTCATTCTTGG..........................................................................	23	1	8.00	0.00	0.00	1.00	7.00
...................................AAATATCGGCTGGTAATTCTGGG..........................................................................	23	1	8.00	0.00	0.00	0.00	8.00
...................................AAATACCAGCTGGTAATTCTGGG..........................................................................	23	1	8.00	0.00	1.00	0.00	7.00
...................................AAATCTCAGCTGGTAATTCTGGG..........................................................................	23	1	7.00	0.00	0.00	0.00	7.00
...................................AAATATCAGCTGGGAATTCTTGG..........................................................................	23	1	7.00	0.00	0.00	0.00	7.00
......................................TATCAGCTGGTAATTCTGGG..........................................................................	20	1	7.00	0.00	0.00	1.00	6.00
....................................AATATCAGCTGGTAATTCTGGG..........................................................................	22	1	7.00	0.00	0.00	0.00	7.00
...................................AAATATCAGCTGGCAATTCTGTG..........................................................................	23	1	7.00	0.00	0.00	0.00	7.00
...................................AAATATCAGCTGGTAATTCTGGGAAA.......................................................................	26	1	7.00	6.00	0.00	0.00	1.00
...................................AAATATCAGCTGGTAATTCTTGT..........................................................................	23	1	6.00	0.00	0.00	0.00	6.00
...................................AAATATCAGCTGGTAATTCTTTG..........................................................................	23	1	6.00	0.00	1.00	0.00	5.00
...................................AAATATCAGCTGGTAATTCTTG...........................................................................	22	1	6.00	0.00	0.00	2.00	4.00
...................................AAATATCATCTGGTAATTCTGGG..........................................................................	23	1	6.00	1.00	0.00	0.00	5.00
...................................AAATATCAGCTTGTAATTCTGGG..........................................................................	23	1	6.00	2.00	0.00	0.00	4.00
...................................AAATATCAGCCGGTAATTCTGGG..........................................................................	23	1	6.00	0.00	1.00	0.00	5.00
...................................AAATATCAGCTGGTAAATCTGGG..........................................................................	23	1	6.00	0.00	0.00	0.00	6.00
...................................AAATATCAGCTGGTAATCCTGGG..........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
...................................AGATATCAGCTGGTAATTCT.............................................................................	20	1	5.00	3.00	1.00	1.00	0.00
...................................AAATATCAGCTGGTAATTCTGGGG.........................................................................	24	1	5.00	3.00	0.00	0.00	2.00
...................................AAATATCAGCTCGTAATTCTGGG..........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
...................................CAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
...................................AAATATCAGCTGGTCATTCTGGGT.........................................................................	24	1	5.00	0.00	0.00	0.00	5.00
....................................................................................CGGAATTTCAGTTGGTATATA...........................	21	1	5.00	5.00	0.00	0.00	0.00
...................................AAATATCCGCTGGTAATTCTGTG..........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
...................................AGATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	4.00	2.00	2.00	0.00	0.00
...................................AAATATCAGCTGGTAATTATGTG..........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...................................AAATATCAGCTGCTAATTCTGGG..........................................................................	23	1	4.00	0.00	1.00	0.00	3.00
...................................AAATATCAGCTGGTAATTCTTGGT.........................................................................	24	1	4.00	0.00	0.00	2.00	2.00
...................................AAATATGAGCTGGTAATTCTGGG..........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...............CTCACCCGATTCTCAAAGGT.................................................................................................	20	1	4.00	1.00	0.00	0.00	3.00
...................................AAATATCAGCTGGTAATTTTGGG..........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...................................AAATATCAGCTGGTAATTCTTGGA.........................................................................	24	1	4.00	0.00	1.00	1.00	2.00
...................................GGATATCAGCTGGTAATTCTGGG..........................................................................	23	1	4.00	4.00	0.00	0.00	0.00
...................................AAATAGCAGCTGGGAATTCTGGG..........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...................................AAATATCAGCTGGTAATTCTGGC..........................................................................	23	1	4.00	1.00	0.00	0.00	3.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	4.00	3.00	1.00	0.00	0.00
...................................AAATAGCAGCTGGCAATTCTGGG..........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...................................AAATATTAGCTGGTAATTCTGGG..........................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...................................AAATATCTGCTGGTAATTCTGGG..........................................................................	23	1	4.00	1.00	0.00	0.00	3.00
...................................AAATATCAACTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................ATCAGCTGGTAATTCTGG...........................................................................	18	1	3.00	0.00	0.00	0.00	3.00
...................................AAATATCAGCTGATAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...................................AATTATCAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...................................AAATATAAGCTGGTTATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...................................AAATATCAGCTGGAAATTCT.............................................................................	20	1	3.00	0.00	2.00	1.00	0.00
...................................AAATATCAGCTGGTAATTGTGGG..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...................................AAATATCAGCTGGTAATTCAGGG..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...................................AAATATCAGCTGGTAATTCTC............................................................................	21	1	3.00	2.00	1.00	0.00	0.00
...................................ATATATCAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...................................AAATATCAGCTGGTAATTCTT............................................................................	21	1	3.00	2.00	1.00	0.00	0.00
...................................AAATATCAGTTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...................................AACTATCAGCTGGTAATTCTGGG..........................................................................	23	1	3.00	0.00	0.00	2.00	1.00

droGri2

GA-------CGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCC-AAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA-	Size	Hit Count	Total Norm	V109 Male body
...................................AAATATCAGCTGGTAATTCTGGG..........................................................................	23	1	38.00	38.00
...................................AAATATCAGCTGGTAATTCTGGGA.........................................................................	24	1	33.00	33.00
...................................AAATATCAGCTGGTAATTCT.............................................................................	20	1	22.00	22.00
...................................AAATATCAGCTGGTAATTCTGGGT.........................................................................	24	1	12.00	12.00
...................................AAATATCAGCTGGTAATTCTG............................................................................	21	1	7.00	7.00
...................................AAATATCAGCTGGTAATT...............................................................................	18	1	6.00	6.00
...................................AAATATCAGCTGGTAATTCTGG...........................................................................	22	1	5.00	5.00
................TCACCCGATTCTCAAAGGT.................................................................................................	19	1	2.00	2.00
...................................AAATATCAACTGGTAATTCTG............................................................................	21	1	1.00	1.00
...................................AAATATCAGCTGGTAATTC..............................................................................	19	1	1.00	1.00
....................................................................................CGGAATTTCAGTTGGTATCGACT.........................	23	1	1.00	1.00
...................................AACTATCAGCTGGTCATTCTGGGA.........................................................................	24	1	1.00	1.00
...................................AAATATCAGCTGGTAATTGGG............................................................................	21	1	1.00	1.00
...................................AAGTATCAGCTGGTCATTCTG............................................................................	21	1	1.00	1.00
...................................AAATATCAGCTGGTAATGCTGGGT.........................................................................	24	1	1.00	1.00
...................................AAATATCAACTGGTAATTCTGGG..........................................................................	23	1	1.00	1.00
...................................AAATATCAGCTGGTAATACTGGG..........................................................................	23	1	1.00	1.00
...................................AAATATCAGCTGGTAATTCTGGA..........................................................................	23	1	1.00	1.00
...................................AAATACCAGCTGGTAATTCTGGG..........................................................................	23	1	1.00	1.00
....................................................................................CGGAATTTCAGTTGGTATCGAC..........................	22	1	1.00	1.00
...................................AAATATCGGCTGGTAATTCTGGG..........................................................................	23	1	1.00	1.00
....................................................................................CGGAATTTCAGTTGGTATCGA...........................	21	1	1.00	1.00
.......................................ATCAGCTGGTAATTCTGGG..........................................................................	19	1	1.00	1.00
...................................AACTATCAGCTGGTAATTCTGGG..........................................................................	23	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image