dme-mir-282- Best orthologs

dme-mir-282	chr3L:3251022-3251118 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 3251038-3251059
   star strand at position 3251081-3251102
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:3251007-3251133 +		1	CC------------------------GTTCTTTAA-C-------TA------TAGTTTCCTTCTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGCG------------------AAAACGGA
droSim1	chr3L:2784381-2784507 +	LASTZ	1	CC------------------------GTTCTTAAA-C-------TA------AAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGCG------------------AAAACGGA
droSec1	super_2:3244745-3244871 +	LASTZ	1	CC------------------------GTTCTTAAA-A-------TA------AAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAACAATCAGCG------------------AAAACGGA
droYak2	chr3L:3795918-3796050 +	LASTZ	1	TC------------------------GTTCTATATCC-------GT-TATATCAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TACGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAAAAATCAGCG------------------AAAACGGA
droEre2	scaffold_4784:5933708-5933834 +	LASTZ	1	TC------------------------GTTCTATCA-C-------CA------CAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCAAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAAGCAGCG------------------AAAACGGA
droEug1	scf7180000409466:975797-975923 +	LASTZ	4	CC------------------------GTTATACAC-C-------GA------GAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCTAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCAAAAAGTCAGCA------------------AAAACGGA
droBia1	scf7180000302428:2604017-2604144 +	LASTZ	4	GT-----------------AC----CCTTCTAAGT----------GC-----AGATTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAA--CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAAATCATCG------------------GAATCGGA
droTak1	scf7180000415378:123710-123845 -	LASTZ	4	CC------------------------ATTCTAAAT-CGAGAATCTGC-----AATCTACCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAA-TCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAAATCATCA-----------------GAAAACGGA
droEle1	scf7180000491249:2016913-2017039 -	LASTZ	4	CT------------------------GTTCTAACT-C-------AA------GAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAA-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAAAGCATCA------------------AAAACGGC
droRho1	scf7180000757706:21549-21675 -	LASTZ	4	CC------------------------GTTCTAATC-C-------AA------TAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAA-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACAAAGGCGAAAAATCAGCA------------------AAAACGGA
droFic1	scf7180000454105:1571232-1571357 +	LASTZ	4	CC------------------------GTTCTGG-C-C-------GA------GAATCTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAGAGCAGCG------------------AAGAGGGC
droKik1	scf7180000302391:353031-353159 +	LASTZ	4	CC------------------------GTTCTGAATCC-------GA------GAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAT-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCAAATGTGCAGCG-----------------AAAGGCGGA
droAna3	scaffold_13337:7556585-7556720 +	LASTZ	1	CC------------------------GTTCTAATT-CGAAAATCGA------AAATTTCCTTATAGATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-TCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGACAAGACATCA----------------CAAAAACGGA
droBip1	scf7180000395543:216902-217046 +	LASTZ	4	CGTGTGGGCGTGGCAATATGCTCTACGTTCTAAAT-C-------GA------AAATTTCCTTATAGATCTAGCCTCTACTAGGCTTTGTCTGTGTT--TTC--------GATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCAAA-AGTCATCA----------------TTAAAACGGA
dp4	chrXR_group8:3299974-3300083 -	LASTZ	1	--------------------------------------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATCA------------------AAAGCGGA
droPer1	super_65:103931-104040 -	LASTZ	1	--------------------------------------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATCA------------------AAAGCGGA
droWil1	scaffold_181136:1999668-1999787 +	LASTZ	1	TT------------------------TTCCTTTAT-G-------TAATATTAATATATCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGGA------TTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGAGAAAATACAACA--------------------------
droVir3	scaffold_12758:910696-910814 -	LASTZ	1	GC------------------------GTCCGAC-------------------AAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGATAT-ACGGTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGGGAC-AAGCAGCG------------------AGGGCG--
droMoj3	scaffold_6680:1963284-1963406 -	LASTZ	1	AT------------------------TTTTTTTTGCG-------GT------GCATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGATAT-AAGATCAGACATAGCCTATGAGAGGTTAGGTGTAGCAAGGGGTCA-AACAGCA------------------GA----GA
droGri2	scaffold_15110:607073-607202 +	LASTZ	1	--------------------------------------------------------TTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCACTTTTTCAAT-TCAATCAGACATAGCCTATGAGAGGTTAGGTGTACAAATGGATCAAAGCAACAAGGCTGCTGTCGGGGACTAAAAATGA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CC------------------------GTTCTTTAA-C-------TA------TAGTTTCCTTCTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGCG------------------AAAACGGA
droSim1	CC------------------------GTTCTTAAA-C-------TA------AAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGCG------------------AAAACGGA
droSec1	CC------------------------GTTCTTAAA-A-------TA------AAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAACAATCAGCG------------------AAAACGGA
droYak2	TC------------------------GTTCTATATCC-------GT-TATATCAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TACGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAAAAATCAGCG------------------AAAACGGA
droEre2	TC------------------------GTTCTATCA-C-------CA------CAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCAAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAAGCAGCG------------------AAAACGGA
droEug1	CC------------------------GTTATACAC-C-------GA------GAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCTAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCAAAAAGTCAGCA------------------AAAACGGA
droBia1	GT-----------------AC----CCTTCTAAGT----------GC-----AGATTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAA--CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAAATCATCG------------------GAATCGGA
droTak1	CC------------------------ATTCTAAAT-CGAGAATCTGC-----AATCTACCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAA-TCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAAATCATCA-----------------GAAAACGGA
droEle1	CT------------------------GTTCTAACT-C-------AA------GAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAA-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAAAGCATCA------------------AAAACGGC
droRho1	CC------------------------GTTCTAATC-C-------AA------TAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAA-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACAAAGGCGAAAAATCAGCA------------------AAAACGGA
droFic1	CC------------------------GTTCTGG-C-C-------GA------GAATCTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAGAGCAGCG------------------AAGAGGGC
droKik1	CC------------------------GTTCTGAATCC-------GA------GAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAT-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCAAATGTGCAGCG-----------------AAAGGCGGA
droAna3	CC------------------------GTTCTAATT-CGAAAATCGA------AAATTTCCTTATAGATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-TCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGACAAGACATCA----------------CAAAAACGGA
droBip1	CGTGTGGGCGTGGCAATATGCTCTACGTTCTAAAT-C-------GA------AAATTTCCTTATAGATCTAGCCTCTACTAGGCTTTGTCTGTGTT--TTC--------GATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCAAA-AGTCATCA----------------TTAAAACGGA
dp4	--------------------------------------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATCA------------------AAAGCGGA
droPer1	--------------------------------------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATCA------------------AAAGCGGA
droWil1	TT------------------------TTCCTTTAT-G-------TAATATTAATATATCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGGA------TTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGAGAAAATACAACA--------------------------
droVir3	GC------------------------GTCCGAC-------------------AAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGATAT-ACGGTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGGGAC-AAGCAGCG------------------AGGGCG--
droMoj3	AT------------------------TTTTTTTTGCG-------GT------GCATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGATAT-AAGATCAGACATAGCCTATGAGAGGTTAGGTGTAGCAAGGGGTCA-AACAGCA------------------GA----GA
droGri2	--------------------------------------------------------TTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCACTTTTTCAAT-TCAATCAGACATAGCCTATGAGAGGTTAGGTGTACAAATGGATCAAAGCAACAAGGCTGCTGTCGGGGACTAAAAATGA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

CC------------------------GTTCTTAAA-C-------TA------AAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGCG------------------AAAACGGA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	877.50	345.00	327.50	58.00	147.00
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	319.50	312.50	0.50	0.00	6.50
...................................................................................................................ACATAGCCTATAAGAGGTTAGG.................................................	22	2	214.00	197.00	7.00	0.00	10.00
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	77.50	2.00	52.50	4.50	18.50
.........................................................................CTCTACTAGGCTTTGTCT...............................................................................................	18	2	52.00	1.50	31.00	11.00	8.50
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	49.50	3.00	21.50	2.50	22.50
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	16.50	2.50	8.00	2.50	3.50
...................................................................................................................ACATAGCCTATAAGAGGTTAG..................................................	21	2	15.50	5.00	3.50	1.00	6.00
.....................................................................TATCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	14.50	0.00	9.00	1.50	4.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	13.00	1.00	5.00	5.50	1.50
...................................................................................................................ACATAGCCTATAAGAGGTTAGGT................................................	23	2	11.00	8.50	2.50	0.00	0.00
.....................................................................TACCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	10.50	0.00	6.50	1.00	3.00
........................................................................CCTCTACTAGGCTTTGTCT...............................................................................................	19	2	10.00	0.50	5.50	3.00	1.00
.........................................................................CTCTACTAGGCTTTGTCC...............................................................................................	18	2	7.50	0.00	4.00	1.50	2.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGT.................................................	22	2	5.50	4.50	1.00	0.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGAC...............................................	24	2	5.50	0.00	2.50	2.00	1.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTT..............................................................................................	23	2	4.50	0.50	2.50	0.00	1.50
.....................................................................TAGCCTCTACTAGTCTTTGTCT...............................................................................................	22	2	4.50	0.00	2.50	0.00	2.00
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	4.50	1.50	2.00	0.50	0.50
.....................................................................TAGCCTCTACTCGGCTTTGTCT...............................................................................................	22	2	3.00	3.00	0.00	0.00	0.00
.....................................................................TATCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	2.50	0.00	1.50	0.00	1.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGAT...............................................	24	2	2.50	0.00	1.50	0.00	1.00
...................................................................................................................ACATAGCCTATAAGAGGTT....................................................	19	2	2.00	2.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGGCT...............................................................................................	22	2	2.00	0.50	0.50	0.50	0.50
...........................................................................................GTGCA--TTCGAAAG-CCGATCAG.......................................................................	21	2	2.00	0.50	1.00	0.00	0.50
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	2.00	2.00	0.00	0.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTACG.................................................	22	2	2.00	2.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCAA..............................................................................................	23	2	2.00	1.50	0.00	0.00	0.50
.....................................................................TAGCCTCTACTAGGCCTTGTCT...............................................................................................	22	2	2.00	1.00	0.50	0.00	0.50
......................................................................AGCCTCTACTAGGCTTTGTCTG..............................................................................................	22	2	2.00	0.50	0.00	0.00	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTCTGT.............................................................................................	24	2	2.00	0.00	2.00	0.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTGAGG.................................................	22	2	2.00	2.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTATGCTTTGTCA...............................................................................................	22	2	1.50	1.50	0.00	0.00	0.00
.....................................................................TAGCCTCCACTAGGCTTTGTCT...............................................................................................	22	2	1.50	1.00	0.00	0.00	0.50
...................................................................................................................ACATAGCCTATCAGAGGTTAGG.................................................	22	2	1.50	1.50	0.00	0.00	0.00
.....................................................................TATCCTCTACTAGGCTTTGTC................................................................................................	21	2	1.50	0.00	1.00	0.00	0.50
......................................................................AGCCTCTACTAGGCTTTGTCT...............................................................................................	21	2	1.50	0.00	1.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGATTTGTCA...............................................................................................	22	2	1.50	1.50	0.00	0.00	0.00
....................................................................................................................CATAGCCTATAAGAGGTTAGG.................................................	21	2	1.50	1.50	0.00	0.00	0.00
.....................................................................TAGCATCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	1.50	0.00	0.00	0.00
..................................................................................................................GACATAGCCTATAAGAGGTTAGG.................................................	23	2	1.50	1.50	0.00	0.00	0.00
...................................................................................................................ACATAGCCTATAAGCGGTTAGG.................................................	22	2	1.50	1.50	0.00	0.00	0.00
.........................................................................CTCTACTAGGCTTTGTCG...............................................................................................	18	2	1.50	0.00	0.50	1.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTATCT...............................................................................................	22	2	1.50	1.00	0.00	0.00	0.50
.....................................................................TAGCCTCTACTAxGCTTTGT.................................................................................................	19	2	1.50	0.00	0.00	0.00	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTCTA..............................................................................................	23	2	1.50	1.00	0.50	0.00	0.00
.....................................................................TAGCCTCTACTCGGCTTTGTCA...............................................................................................	22	2	1.50	1.50	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	1.50	0.00	0.50	0.50	0.50
......................................................................AGCCTCTACTAGGCTTTGTCTGT.............................................................................................	23	2	1.50	0.00	0.00	0.50	1.00

droSec1

CC------------------------GTTCTTAAA-A-------TA------AAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAACAATCAGCG------------------AAAACGGA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	6723.00	202.50	4100.00	2420.50
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	1460.50	3.00	1382.50	75.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGG.................................................	22	2	599.50	46.50	230.50	322.50
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	362.00	3.00	243.50	115.50
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	190.50	5.50	126.50	58.50
...................................................................................................................ACATAGCCTATAAGAGGTTAG..................................................	21	2	79.00	25.50	27.50	26.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGT................................................	23	2	45.00	3.50	15.00	26.50
...................................................................................................................ACATAGCCTATAAGAGGTTAGT.................................................	22	2	35.00	12.50	8.00	14.50
...................................................................................................................ACATAGCCTATAAGAGGTT....................................................	19	2	23.50	0.00	4.00	19.50
.....................................................................TAGCTTCTACTAGGCTTTGTCT...............................................................................................	22	2	17.00	0.00	15.00	2.00
.....................................................................TAGCCCCTACTAGGCTTTGTCT...............................................................................................	22	2	16.50	0.00	11.50	5.00
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	16.00	0.00	16.00	0.00
.....................................................................TAGCxxCTACTAGGCTTTGTCT...............................................................................................	20	2	15.00	0.00	14.00	1.00
.....................................................................TAGCCTCTACTAGGTTTTGTCT...............................................................................................	22	2	14.50	0.50	13.00	1.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	13.50	1.00	5.00	7.50
.....................................................................TAGCCTCTATTAGGCTTTGTCT...............................................................................................	22	2	13.50	0.00	12.50	1.00
..................................................................................................................GACATAGCCTATAAGAGGTTAGG.................................................	23	2	13.00	1.00	5.00	7.00
.....................................................................TAGTCTCTACTAGGCTTTGTCT...............................................................................................	22	2	11.50	0.00	11.00	0.50
.....................................................................TAGCCTCTACTAGGCxTTGTCT...............................................................................................	21	2	11.50	0.00	11.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	11.50	0.00	6.00	5.50
....................................................................CTAGCCTCTACTAGGCTTTGTCT...............................................................................................	23	2	11.50	0.00	8.00	3.50
.....................................................................TACCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	11.00	1.00	5.50	4.50
....................................................................................................................CATAGCCTATAAGAGGTTAGG.................................................	21	2	9.50	1.00	4.50	4.00
.....................................................................TAGCCTTTACTAGGCTTTGTCT...............................................................................................	22	2	9.00	0.00	8.50	0.50
.....................................................................CAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	9.00	1.00	5.00	3.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTT..............................................................................................	23	2	8.50	1.50	0.00	7.00
.....................................................................TGGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	8.00	0.00	4.00	4.00
.....................................................................TAGCCTCTACCAGGCTTTGTCT...............................................................................................	22	2	8.00	0.00	5.50	2.50
.....................................................................TAGCCTCTACTAGGCCTTGTCT...............................................................................................	22	2	8.00	0.00	6.00	2.00
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	8.00	0.50	6.00	1.50
.....................................................................TATCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	8.00	1.00	1.00	6.00
......................................................................AGCCTCTACTAGGCTTTGTCT...............................................................................................	21	2	7.50	0.50	4.00	3.00
.....................................................................TAGCCTCTAATAGGCTTTGTCT...............................................................................................	22	2	7.00	0.50	4.50	2.00
.....................................................................TAGCCTCTACTAGGCTTCGTCT...............................................................................................	22	2	7.00	0.00	5.50	1.50
.....................................................................TAGCCTCCACTAGGCTTTGTCT...............................................................................................	22	2	6.50	0.00	3.00	3.50
.....................................................................TAGCCTCTACTGGGCTTTGTCT...............................................................................................	22	2	6.50	0.00	5.00	1.50
.....................................................................TAGCCCCTACTAGGCTTTGTCA...............................................................................................	22	2	6.50	0.00	6.50	0.00
.....................................................................TAGCATCTACTAGGCTTTGTCT...............................................................................................	22	2	6.00	0.00	2.50	3.50
.....................................................................TAGCCTCTACTAGGCTTTCTCT...............................................................................................	22	2	6.00	1.50	2.50	2.00
.........................................................................CTCTACTAGGCTTTGTCT...............................................................................................	18	2	5.50	2.50	1.00	2.00
.....................................................................................................................ATAGCCTATAAGAGGTTAGG.................................................	20	2	5.50	0.00	2.50	3.00
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	5.50	0.00	4.50	1.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGA.................................................	22	2	5.50	1.50	2.00	2.00
.....................................................................TAGCCTCTACTAGGCTTTATCT...............................................................................................	22	2	5.50	1.00	2.50	2.00
.....................................................................TAGCCTCTACTAGGCCTTGTCA...............................................................................................	22	2	5.50	0.00	5.50	0.00
.....................................................................TAGCTTCTACTAGGCTTTGT.................................................................................................	20	2	5.50	0.50	5.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGA................................................	23	2	5.00	1.50	2.00	1.50
.....................................................................TAGCCTCTCCTAGGCTTTGTCT...............................................................................................	22	2	5.00	0.00	3.50	1.50
.....................................................................TAGCCTCTACTAGCCTTTGTCT...............................................................................................	22	2	5.00	0.00	1.50	3.50
.....................................................................TAGCCTCTACTAGGCTTTGTCTGT.............................................................................................	24	2	5.00	2.00	1.00	2.00
......................................................................................................................................AGGTCTxCCAAGGTGAACA.................................	18	2	5.00	0.00	0.50	4.50
.....................................................................TAGCCTATACTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	0.50	4.00
..................................................................................................................GACATAGCCTATAAGAGGTT....................................................	20	2	4.50	0.50	0.50	3.50
..................................................................................................................GACATAGCCTATAAGAGGTTAG..................................................	22	2	4.50	1.00	0.50	3.00
.....................................................................TAGTCTCTACTAGGCTTTGTCA...............................................................................................	22	2	4.50	0.00	4.50	0.00
.....................................................................TAGCCTCTACTCGGCTTTGTCT...............................................................................................	22	2	4.50	0.50	2.50	1.50
.....................................................................TAGCCTCTATTAGGCTTTGTCA...............................................................................................	22	2	4.50	0.00	4.50	0.00
.....................................................................TAGCTTCTACTAGGCTTTGTCA...............................................................................................	22	2	4.50	0.00	4.50	0.00
.....................................................................TTGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	4.00	0.00
.....................................................................TAGCCTCTACTAGACTTTGTCT...............................................................................................	22	2	4.00	0.50	0.50	3.00
.....................................................................TAGCCTCTACTAGGCTTTTTCT...............................................................................................	22	2	4.00	1.00	2.00	1.00
.....................................................................TAGCCTCTACTAGGCTTTGTCAA..............................................................................................	23	2	4.00	0.00	3.50	0.50
.....................................................................TAGCCTCTACTAAGCTTTGTCT...............................................................................................	22	2	4.00	0.00	4.00	0.00
.....................................................................TAGCCTCTACTACGCTTTGTCT...............................................................................................	22	2	4.00	0.00	2.50	1.50
.....................................................................TAGCCTCTACAAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	2.50	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTCTA..............................................................................................	23	2	4.00	0.00	1.50	2.50
...........................................................................................GTGCA--TTCGAAAG-CCGATCAG.......................................................................	21	2	3.50	2.00	1.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGACT...............................................................................................	22	2	3.50	0.00	1.50	2.00
.....................................................................TAGCCTCTACTAGGCTTTGTTT...............................................................................................	22	2	3.50	0.00	3.00	0.50
.....................................................................TAGTCTCTACTAGGCTTTGT.................................................................................................	20	2	3.50	0.00	3.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTAT...............................................................................................	22	2	3.50	0.00	1.50	2.00
.....................................................................TAGCCTCAACTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	1.00	2.00
.....................................................................TCGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	2.00	1.00
.....................................................................TAGCCTCTGCTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	2.00	1.00
.....................................................................TAGCCTTTACTAGGCTTTGTCA...............................................................................................	22	2	3.00	0.50	2.50	0.00
.....................................................................TAGCCTCTxCTAGGCTTTGTCT...............................................................................................	21	2	3.00	0.00	2.00	1.00
.....................................................................TAGCCTCTACTAGGCTTTTTCA...............................................................................................	22	2	3.00	0.00	3.00	0.00
.......................................................................GCCTCTACTAGGCTTTGTCT...............................................................................................	20	2	3.00	0.00	2.50	0.50
...................................................................................................................ACATAGCTTATAAGAGGTTAGG.................................................	22	2	3.00	0.00	3.00	0.00
.....................................................................TAGCCTCTACTGGGCTTTGTCA...............................................................................................	22	2	3.00	0.00	2.50	0.50
...................................................................................................................ACATAGCCTATAAGAGGTTA...................................................	20	2	2.50	0.00	1.00	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTAA...............................................................................................	22	2	2.50	0.00	2.50	0.00
.....................................................................TAGCCTCTACTAGGTTTTGTCA...............................................................................................	22	2	2.50	0.00	2.50	0.00
.....................................................................TAGCCTCTACTAGGCATTGTCT...............................................................................................	22	2	2.50	0.00	2.50	0.00
.....................................................................TAGCCTCTACTAGGCxTTGTCA...............................................................................................	21	2	2.50	0.00	2.50	0.00
...................................................................................................................ACATAGTCTATAAGAGGTTAGG.................................................	22	2	2.50	0.00	2.00	0.50
.....................................................................TAGCCTCTACTAGGCTCTGTCT...............................................................................................	22	2	2.50	0.00	1.50	1.00
.....................................................................TAGCCTCTACTATGCTTTGTCT...............................................................................................	22	2	2.00	0.00	1.00	1.00
...................................................................TCTAGCCTCTACTAGGCTTTGTCT...............................................................................................	24	2	2.00	0.00	1.00	1.00
.....................................................................TAGCCTCTACTTGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	2.00	0.00
.....................................................................TGGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	2.00	0.00	2.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGG.................................................	22	2	2.00	0.50	0.00	1.50
......................................................................AGCCTCTACTAGGCTTTGTCA...............................................................................................	21	2	2.00	0.00	2.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGTT...............................................	24	2	2.00	0.00	0.00	2.00
...................................................................................................................ACATATCCTATAAGAGGTTAGG.................................................	22	2	2.00	0.50	0.00	1.50
.....................................................................TAGACTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.50	1.50
....................................................................CTAGCCTCTACTAGGCTTTGTCA...............................................................................................	23	2	1.50	0.00	1.50	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAG..................................................	21	2	1.50	0.00	0.00	1.50
.....................................................................TTGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	1.50	0.00	1.50	0.00
.....................................................................TAGCCACTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.00	1.50
.....................................................................TAGCCTCTACCAGGCTTTGTCA...............................................................................................	22	2	1.50	0.00	1.50	0.00

droYak2

TC------------------------GTTCTATATCC-------GT-TATATCAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TACGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAAAAATCAGCG------------------AAAACGGA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2663.50	1273.00	488.50	127.50	755.00	19.50
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	614.00	603.50	3.50	3.00	4.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGG.................................................	22	2	195.00	104.50	14.50	32.50	42.50	1.00
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	97.00	17.50	28.50	11.50	38.50	1.00
.....................................................................TAGCCTCTACTCGGCTTTGTCT...............................................................................................	22	2	41.00	14.00	6.00	0.00	21.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAG..................................................	21	2	32.00	3.00	3.50	9.50	15.00	1.00
.....................................................................TAGCCTCTACTAGGCTTTTTCT...............................................................................................	22	2	27.00	2.00	16.50	0.00	8.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	20.50	2.00	3.00	8.50	7.00	0.00
.....................................................................TAGCCTCTACTATGCTTTGTCT...............................................................................................	22	2	16.00	3.00	6.00	0.50	6.50	0.00
.........................................................................CTCTACTAGGCTTTGTCT...............................................................................................	18	2	15.00	1.50	1.00	0.00	1.50	11.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGT................................................	23	2	11.00	4.50	1.00	1.50	3.00	1.00
.....................................................................TAGCATCTACTAGGCTTTGTCT...............................................................................................	22	2	10.50	5.00	1.50	0.00	4.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGT.................................................	22	2	10.00	2.50	1.00	5.00	1.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	7.50	1.50	0.50	1.00	4.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	7.00	2.00	0.00	0.00	1.50	3.50
.....................................................................TAGCCTCTACTGGGCTTTGTCT...............................................................................................	22	2	6.00	2.00	1.00	0.00	3.00	0.00
.....................................................................TAGCCTCTGCTAGGCTTTGTCT...............................................................................................	22	2	6.00	2.50	1.00	0.00	2.50	0.00
.....................................................................TAGCCTCTACTCGGCTTTGTCA...............................................................................................	22	2	5.50	5.50	0.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	5.50	4.50	0.50	0.00	0.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTAT...............................................................................................	22	2	5.50	3.50	1.00	0.00	1.00	0.00
.....................................................................TAGCCTCTAATAGGCTTTGTCT...............................................................................................	22	2	5.50	3.50	0.50	0.00	1.50	0.00
.....................................................................TAGCCTCGACTAGGCTTTGTCT...............................................................................................	22	2	5.00	0.50	0.50	0.00	4.00	0.00
.....................................................................TAGCCTCTACGAGGCTTTGTCT...............................................................................................	22	2	4.50	0.50	1.50	0.00	2.50	0.00
.....................................................................TAGCCTCTCCTAGGCTTTGTCT...............................................................................................	22	2	4.50	2.00	0.00	0.00	2.00	0.50
.....................................................................TAGCCCCTACTAGGCTTTGTCT...............................................................................................	22	2	4.50	1.50	1.00	0.50	1.50	0.00
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	4.50	2.50	0.50	0.00	1.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTT..............................................................................................	23	2	4.00	1.00	1.00	1.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTATCT...............................................................................................	22	2	4.00	3.00	0.50	0.50	0.00	0.00
.....................................................................TAGCCTCTACCAGGCTTTGTCT...............................................................................................	22	2	4.00	3.50	0.00	0.00	0.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTA..............................................................................................	23	2	4.00	3.00	0.50	0.00	0.50	0.00
.....................................................................TAGCCTCTACTAGTCTTTGTCT...............................................................................................	22	2	3.50	0.50	1.50	0.00	1.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	3.50	1.00	1.00	0.50	1.00	0.00
.....................................................................TAGCCTCTACTTGGCTTTGTCT...............................................................................................	22	2	3.50	2.00	0.00	0.00	1.50	0.00
.....................................................................TAGCCTCTATTAGGCTTTGTCT...............................................................................................	22	2	3.50	1.50	0.50	0.50	1.00	0.00
..................................................................................................................GACATAGCCTATAAGAGGTTAG..................................................	22	2	3.50	0.00	0.00	2.00	1.50	0.00
.....................................................................TAGCCTCTTCTAGGCTTTGTCT...............................................................................................	22	2	3.50	2.00	0.00	0.00	1.50	0.00
.....................................................................TAGCCGCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	1.00	0.00	2.50	0.00
..................................................................................................................GACATAGCCTATAAGAGGTTAGG.................................................	23	2	3.00	0.00	0.00	0.50	2.50	0.00
.....................................................................TAGCATCTACTAGGCTTTGTCA...............................................................................................	22	2	3.00	2.50	0.00	0.00	0.50	0.00
.....................................................................TGGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.00	1.00	1.00	0.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGCGTTGTCT...............................................................................................	22	2	3.00	0.50	1.00	0.00	1.00	0.50
.....................................................................TAGCCTCTACTAAGCTTTGTCT...............................................................................................	22	2	3.00	1.50	1.00	0.00	0.50	0.00
.....................................................................TAGCCTATACTAGGCTTTGTCT...............................................................................................	22	2	3.00	1.00	0.00	0.00	2.00	0.00
.....................................................................TAGTCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.50	1.00	0.50	0.00	1.00	0.00
.....................................................................TAGACTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.50	0.50	0.50	0.00	1.50	0.00
......................................................................AGCCTCTACTAGGCTTTGTCT...............................................................................................	21	2	2.50	1.00	0.00	0.00	0.50	1.00
...................................................................................................................ACATAGCCTATAAGAGGTT....................................................	19	2	2.50	0.00	0.50	0.00	2.00	0.00
....................................................................CTAGCCTCTACTAGGCTTTGTCT...............................................................................................	23	2	2.50	2.50	0.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGTCTTTTTCT...............................................................................................	22	2	2.50	0.00	1.50	0.00	1.00	0.00
...........................................................................................GTGCA--TACGAAAG-CCGATCAG.......................................................................	21	2	2.50	0.50	0.50	0.50	0.50	0.50
......................................................................AGCCTCTACTAGGCTTTGTCA...............................................................................................	21	2	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................................TATCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.50	0.00	0.00	0.50	1.00
.....................................................................TAGCCTCTACTAGGCTCTGTCT...............................................................................................	22	2	2.00	0.50	0.50	0.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGCCTTGTCT...............................................................................................	22	2	2.00	1.00	0.00	0.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGGCT...............................................................................................	22	2	2.00	1.00	0.50	0.00	0.50	0.00
.......................................................................GCCTCTACTAGGCTTTGTCT...............................................................................................	20	2	2.00	0.50	1.00	0.00	0.00	0.50
...................................................................................................................ACATAGCCTATAAGAGGTTA...................................................	20	2	2.00	0.00	0.00	1.00	1.00	0.00
.....................................................................TAGCCTCTACTAGCCTTTGTCT...............................................................................................	22	2	2.00	1.00	0.00	0.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTAA.............................................................................................	24	2	2.00	1.00	0.00	0.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTGT...............................................................................................	22	2	2.00	0.50	1.00	0.00	0.50	0.00
.....................................................................TAGCCTCTACTAGGCTGTGTCT...............................................................................................	22	2	2.00	0.50	0.00	0.00	1.50	0.00
......................................................................AGCCTCTACTAGGCTTTGTCTGT.............................................................................................	23	2	2.00	0.50	0.50	0.00	0.00	1.00
.....................................................................TAGCCTCTTCTAGGCTTTGTCA...............................................................................................	22	2	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTCGTCT...............................................................................................	22	2	2.00	1.00	0.50	0.00	0.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTTTCA...............................................................................................	22	2	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTACGCTTTGTCT...............................................................................................	22	2	2.00	0.50	0.50	0.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGATTTGTCA...............................................................................................	22	2	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTCTCT...............................................................................................	22	2	1.50	1.00	0.00	0.00	0.50	0.00
.....................................................................TAGCATATACTAGGCTTTGTCT...............................................................................................	22	2	1.50	1.00	0.00	0.00	0.50	0.00
...................................................................................................................ACATAGCCTATAAGCGGTTAGG.................................................	22	2	1.50	1.00	0.00	0.00	0.50	0.00
.....................................................................TAGGCTCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.50	0.50	0.00	0.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTTTC................................................................................................	21	2	1.50	0.00	1.00	0.00	0.50	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGA................................................	23	2	1.50	0.00	0.00	1.00	0.50	0.00
.....................................................................GAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.50	0.00	1.00	0.00
.....................................................................TAGCCTCTACCCGGCTTTGTCT...............................................................................................	22	2	1.50	0.50	1.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTGT.............................................................................................	24	2	1.50	0.00	0.00	0.00	0.50	1.00
.....................................................................TAGCCTCTACTAGGCTTTGTTT...............................................................................................	22	2	1.50	0.00	0.00	0.00	1.50	0.00
......................................................................AGCCTCTACTAGGCTTTGTCTG..............................................................................................	22	2	1.50	1.00	0.50	0.00	0.00	0.00
.....................................................................CAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	1.00	0.00	0.00	0.50	0.00
.....................................................................TAGCCTCTACTCGGCTTTGTCC...............................................................................................	22	2	1.50	1.00	0.00	0.00	0.50	0.00

droEre2

TC------------------------GTTCTATCA-C-------CA------CAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCAAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAAGCAGCG------------------AAAACGGA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3984.00	130.50	1795.50	0.00	2058.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGG.................................................	22	2	429.00	26.00	57.50	0.00	345.50
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	104.50	80.50	9.50	0.00	14.50
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	96.50	2.00	23.00	0.00	71.50
...................................................................................................................ACATAGCCTATAAGAGGTTAG..................................................	21	2	65.00	1.00	11.50	0.00	52.50
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	37.50	0.00	11.00	0.00	26.50
.....................................................................TAGCCTCTACTAGGCTTTTTCT...............................................................................................	22	2	36.50	5.00	25.50	0.00	6.00
.....................................................................TAGCCTCTACTCGGCTTTGTCT...............................................................................................	22	2	31.50	0.50	30.00	0.00	1.00
.....................................................................TAGCCTCTACTATGCTTTGTCT...............................................................................................	22	2	30.50	2.00	9.00	0.00	19.50
.........................................................................CTCTACTAGGCTTTGTCT...............................................................................................	18	2	27.50	0.00	1.50	0.00	26.00
.....................................................................TATCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	22.50	1.00	0.50	0.00	21.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGT................................................	23	2	21.50	0.00	3.50	0.00	18.00
.....................................................................TAGCCTATACTAGGCTTTGTCT...............................................................................................	22	2	21.00	0.00	4.00	0.00	17.00
.....................................................................TAGCATCTACTAGGCTTTGTCT...............................................................................................	22	2	17.50	1.50	2.50	0.00	13.50
.....................................................................TAGCCTCTACTAGGCTTTGTAT...............................................................................................	22	2	15.50	0.00	2.00	0.00	13.50
.....................................................................TAGCCTCTACTAGTCTTTGTCT...............................................................................................	22	2	14.50	2.00	4.00	0.00	8.50
...................................................................................................................ACATAGCCTATAAGAGGTTAGT.................................................	22	2	13.50	0.00	1.50	0.00	12.00
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	12.50	0.00	2.50	0.00	10.00
.....................................................................TAGACTCTACTAGGCTTTGTCT...............................................................................................	22	2	12.50	0.00	0.50	0.00	12.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	12.00	0.50	1.50	0.00	10.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTT..............................................................................................	23	2	11.00	0.00	8.50	0.00	2.50
....................................................................CTAGCCTCTACTAGGCTTTGTCT...............................................................................................	23	2	10.00	0.50	4.50	0.00	5.00
........................................................................CCTCTACTAGGCTTTGTCT...............................................................................................	19	2	9.50	0.00	0.00	0.00	9.50
.....................................................................TAGCCTCTAATAGGCTTTGTCT...............................................................................................	22	2	8.00	0.50	0.00	0.00	7.50
...................................................................................................................ACATAGCCTATAAGAGGTTA...................................................	20	2	7.00	0.00	1.50	0.00	5.50
...................................................................................................................ACATAGCCTATAAGAGGTT....................................................	19	2	7.00	0.00	0.50	0.00	6.50
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	7.00	0.00	3.50	0.00	3.50
..................................................................................................................GACATAGCCTATAAGAGGTTAGG.................................................	23	2	6.50	1.50	0.00	0.00	5.00
..................................................................................................................GACATAGCCTATAAGAGGTTAG..................................................	22	2	6.50	0.00	1.00	0.00	5.50
.....................................................................TAGCCTCTACTAGGCTTCGTCT...............................................................................................	22	2	6.50	0.00	4.00	0.00	2.50
.....................................................................TAGCCTCTACTAAGCTTTGTCT...............................................................................................	22	2	6.00	0.50	3.50	0.00	2.00
.....................................................................TAGCCTCTACTGGGCTTTGTCT...............................................................................................	22	2	5.50	0.00	2.50	0.00	3.00
.....................................................................TAGCCTCTACTAGGCTTTCTCT...............................................................................................	22	2	5.00	0.50	2.50	0.00	2.00
.....................................................................TAGCCTCTACTAGGCTTTATCT...............................................................................................	22	2	5.00	0.00	3.50	0.00	1.50
.....................................................................TAGCCTTTACTAGGCTTTGTCT...............................................................................................	22	2	5.00	1.00	2.00	0.00	2.00
.....................................................................CAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	5.00	1.00	3.00	0.00	1.00
.....................................................................TAACCTCTACTAGGCTTTGTCT...............................................................................................	22	2	5.00	0.50	1.00	0.00	3.50
...................................................................................................................ACATATCCTATAAGAGGTTAGG.................................................	22	2	5.00	0.50	0.00	0.00	4.50
.....................................................................TAGCCGCTACTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	4.50	0.00	0.00
..................................................................................................................GACATAGCCTATAAGAGGTT....................................................	20	2	4.50	0.00	1.00	0.00	3.50
.....................................................................TAGCCTCTGCTAGGCTTTGTCT...............................................................................................	22	2	4.50	1.00	2.50	0.00	1.00
.....................................................................TAGCTTCTACTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	3.00	0.00	1.50
.....................................................................TAGCCTCTACTATGCTTTGTCA...............................................................................................	22	2	4.00	3.00	0.50	0.00	0.50
.....................................................................TAGCCTCTACGAGGCTTTGTCT...............................................................................................	22	2	4.00	0.50	3.50	0.00	0.00
.....................................................................TAGTCTCTACTAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	1.00	0.00	3.00
.....................................................................TAGCCTCTACTAGGCCTTGTCT...............................................................................................	22	2	4.00	0.00	2.50	0.00	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	4.00	0.50	2.50	0.00	1.00
...................................................................................................................ACATAGCCTATAAGAGGTTATG.................................................	22	2	4.00	0.50	0.50	0.00	3.00
.....................................................................TAGCCTCTACCAGGCTTTGTCT...............................................................................................	22	2	3.50	0.50	1.50	0.00	1.50
.....................................................................TACCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	0.00	0.00	3.50
......................................................................AGCCTCTACTAGGCTTTGTCT...............................................................................................	21	2	3.50	0.00	2.00	0.00	1.50
.....................................................................TAGCCTCTACTTGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	2.00	0.00	1.50
.....................................................................TAGCxxCTACTAGGCTTTGTCT...............................................................................................	20	2	3.50	0.00	1.50	0.00	2.00
...................................................................................................................ACATAGCCTATAATAGGTTAGG.................................................	22	2	3.50	0.00	0.00	0.00	3.50
.....................................................................TAGGCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	0.50	0.00	3.00
...................................................................................................................ACATAGCCTATAAGATGTTAGG.................................................	22	2	3.50	1.00	0.50	0.00	2.00
.....................................................................TAGCCTCTACTAGGCTTTGGCT...............................................................................................	22	2	3.00	0.50	1.00	0.00	1.50
.....................................................................................................................ATAGCCTATAAGAGGTTAGG.................................................	20	2	3.00	0.50	0.00	0.00	2.50
.....................................................................TAGCCCCTACTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	1.50	0.00	1.50
...................................................................................................................ACATAGCCTATGAGAGGTTAGG.................................................	22	2	3.00	1.50	0.50	0.00	1.00
.....................................................................TAGCCTCTACTAGCCTTTGTCT...............................................................................................	22	2	3.00	0.00	0.50	0.00	2.50
.....................................................................TAGCCTCTCCTCGGCTTTGTCT...............................................................................................	22	2	3.00	1.00	2.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTTTCA...............................................................................................	22	2	3.00	2.00	0.00	0.00	1.00
.....................................................................TAGCCTCTACTAGGCTCTGTCT...............................................................................................	22	2	3.00	0.50	1.00	0.00	1.50
.....................................................................TAGCCTCCACTAGGCTTTGTCT...............................................................................................	22	2	2.50	1.50	0.00	0.00	1.00
.....................................................................TAGCCTCTACTAGACTTTGTCT...............................................................................................	22	2	2.50	0.00	2.00	0.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTTT...............................................................................................	22	2	2.50	0.00	1.00	0.00	1.50
.....................................................................TAGCCTCTCCTAGGCTTTGTCT...............................................................................................	22	2	2.50	0.00	1.50	0.00	1.00
...................................................................................................................ACATAGCATATAAGAGGTTAGG.................................................	22	2	2.50	0.00	0.50	0.00	2.00
.......................................................................GCCTCTACTAGGCTTTGTCT...............................................................................................	20	2	2.50	0.50	2.00	0.00	0.00
...................................................................................................................ACATAGACTATAAGAGGTTAGG.................................................	22	2	2.50	0.00	0.00	0.00	2.50
.....................................................................TGGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	1.00	0.00	1.00
.....................................................................TAGCCTCTACTAGGTTTTGTCT...............................................................................................	22	2	2.00	0.00	1.50	0.00	0.50
...................................................................................................................ACATAGCCTATCAGAGGTTAGG.................................................	22	2	2.00	0.50	1.00	0.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	2.00	1.00	0.50	0.00	0.50
...................................................................................................................ACATAGCCTATAAGAGGTTAGGA................................................	23	2	2.00	0.00	0.00	0.00	2.00
...................................................................TCTAGCCTCTACTAGGCTTTGTCT...............................................................................................	24	2	2.00	0.00	0.50	0.00	1.50
...................................................................................................................ACATAGCCTATAAGATGTTAG..................................................	21	2	2.00	0.00	0.00	0.00	2.00
.....................................................................TAGCCTCTACTACGCTTTGTCT...............................................................................................	22	2	2.00	1.00	0.50	0.00	0.50
......................................................................TACCTCTACTAGGCTTTGTCT...............................................................................................	21	2	2.00	0.00	0.00	0.00	2.00
.....................................................................TAGCCTCTATTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	1.50	0.00	0.50
.....................................................................AAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	1.50	0.00	0.50
.....................................................................TAGxCTCTACTAGGCTTTGTCT...............................................................................................	21	2	2.00	0.00	0.00	0.00	2.00
...................................................................................................................ACATAGCCTATAAGAGGT.....................................................	18	2	2.00	0.00	0.00	0.00	2.00
.....................................................................TAGCCGCTACGAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	1.50	0.00	0.00
.....................................................................TCGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.50	0.00	1.00
.....................................................................TAGCCTCTACTAGGATTTGTC................................................................................................	21	2	1.50	0.00	0.00	0.00	1.50
.....................................................................TAGCCTCTACTAGGxTTTGTCT...............................................................................................	21	2	1.50	0.00	0.00	0.00	1.50
.....................................................................TAGCCTCTACTAGGGTTTGTCT...............................................................................................	22	2	1.50	0.50	0.00	0.00	1.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGA.................................................	22	2	1.50	0.00	0.00	0.00	1.50
.....................................................................TAGCCTCTACTCGGCTTTGTC................................................................................................	21	2	1.50	0.00	1.50	0.00	0.00
.....................................................................TAGCCTCGACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	1.00	0.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTCTCA...............................................................................................	22	2	1.50	1.50	0.00	0.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGTT...............................................	24	2	1.50	0.00	0.50	0.00	1.00
.....................................................................TAGCATCTACTAGGCTTTGTAT...............................................................................................	22	2	1.50	0.00	0.00	0.00	1.50
...................................................................................................................AAATAGCCTATAAGAGGTTAGG.................................................	22	2	1.50	0.00	0.00	0.00	1.50
.....................................................................TAGCCTCTACTAGTCTTTTTCT...............................................................................................	22	2	1.50	0.00	1.50	0.00	0.00
.....................................................................TAGCGTCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.00	0.00	1.50

droEug1

CC------------------------GTTATACAC-C-------GA------GAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCTAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCAAAAAGTCAGCA------------------AAAACGGA

Size

Hit Count

Total Norm

droBia1

GT-----------------AC----CCTTCTAAGT----------GC-----AGATTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAA--CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAAATCATCG------------------GAATCGGA

Size

Hit Count

Total Norm

droTak1

CC------------------------ATTCTAAAT-CGAGAATCTGC-----AATCTACCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAA-TCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAAATCATCA-----------------GAAAACGGA

Size

Hit Count

Total Norm

droEle1

CT------------------------GTTCTAACT-C-------AA------GAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAA-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAAAGCATCA------------------AAAACGGC

Size

Hit Count

Total Norm

droRho1

CC------------------------GTTCTAATC-C-------AA------TAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAA-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACAAAGGCGAAAAATCAGCA------------------AAAACGGA

Size

Hit Count

Total Norm

droFic1

CC------------------------GTTCTGG-C-C-------GA------GAATCTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAAAGAGCAGCG------------------AAGAGGGC

Size

Hit Count

Total Norm

droKik1

CC------------------------GTTCTGAATCC-------GA------GAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAT-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCAAATGTGCAGCG-----------------AAAGGCGGA

Size

Hit Count

Total Norm

droAna3

CC------------------------GTTCTAATT-CGAAAATCGA------AAATTTCCTTATAGATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-TCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGACAAGACATCA----------------CAAAAACGGA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	5235.50	588.50	654.50	3368.00	624.50
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	1484.50	4.50	4.00	21.50	1454.50
...................................................................................................................ACATAGCCTATAAGAGGTTAGG.................................................	22	2	829.50	84.50	356.00	185.00	204.00
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	320.50	76.50	10.00	223.00	11.00
...................................................................................................................ACATAGCCTATAAGAGGTTAG..................................................	21	2	149.50	45.50	33.50	56.50	14.00
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	84.50	49.50	7.00	27.00	1.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGT.................................................	22	2	73.50	21.50	33.00	14.00	5.00
.....................................................................TAGCCTCTACTAGGCTTTTTCA...............................................................................................	22	2	56.50	0.00	0.00	0.00	56.50
.....................................................................TAGCCTCTACTAGGCTTTTTCT...............................................................................................	22	2	47.00	1.00	2.00	18.00	26.00
.....................................................................TATCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	36.50	4.00	27.00	2.00	3.50
...................................................................................................................ACATAGCCTATAAGAGGTTAGGT................................................	23	2	36.50	5.50	19.50	8.50	3.00
.....................................................................TAGCCTCTACTCGGCTTTGTCT...............................................................................................	22	2	34.50	1.50	0.50	23.50	9.00
.....................................................................TAGCCTCTACTATGCTTTGTCA...............................................................................................	22	2	33.50	0.00	0.00	0.50	33.00
.....................................................................TAGCCTCTACTATGCTTTGTCT...............................................................................................	22	2	32.00	2.00	1.00	18.00	11.00
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	32.00	0.00	0.00	7.50	24.50
.....................................................................TAGCATCTACTAGGCTTTGTCT...............................................................................................	22	2	27.50	0.50	2.00	23.50	1.50
...................................................................................................................ACATAGCCTATAAGAGGTT....................................................	19	2	24.50	0.00	15.00	8.50	1.00
.....................................................................TAGCCTCTACTACGCTTTGTCT...............................................................................................	22	2	24.50	3.00	0.00	17.00	4.50
.....................................................................TAGCCGCTACTAGGCTTTGTCT...............................................................................................	22	2	22.50	0.00	0.00	21.00	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	22.50	2.00	0.00	3.50	17.00
.....................................................................TAGCCTCTACTAGGCTTTGTAT...............................................................................................	22	2	19.00	6.50	5.00	7.00	0.50
.....................................................................TAGCCTATACTAGGCTTTGTCT...............................................................................................	22	2	18.50	2.50	5.00	10.50	0.50
...................................................................................................................ACATAGCCTATAAGAGGTTA...................................................	20	2	18.50	1.00	11.00	3.50	3.00
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	17.50	3.00	6.50	6.50	1.50
...................................................................................................................ACATAGCCTATAAGAGGTTATG.................................................	22	2	17.00	2.50	3.00	1.00	10.50
.....................................................................TAGCCTCTACTAGGCTTTCTCT...............................................................................................	22	2	16.50	0.00	0.50	12.50	3.50
.....................................................................TAGCCTCTACTAGTCTTTGTCT...............................................................................................	22	2	16.50	2.50	3.50	7.00	3.50
.....................................................................TAGACTCTACTAGGCTTTGTCT...............................................................................................	22	2	16.00	0.50	0.50	14.50	0.50
.....................................................................TAGCCTCTACCAGGCTTTGTCT...............................................................................................	22	2	15.50	0.50	0.50	10.50	4.00
.....................................................................TAGCCTCTACTCGGCTTTGTCA...............................................................................................	22	2	15.50	0.00	0.00	0.00	15.50
.....................................................................TAGCCTCGACTAGGCTTTGTCT...............................................................................................	22	2	15.00	0.00	0.00	14.50	0.50
.....................................................................TAGCCTCTACGAGGCTTTGTCT...............................................................................................	22	2	15.00	2.00	0.50	12.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTCTT..............................................................................................	23	2	14.00	1.50	2.50	9.50	0.50
.....................................................................TAGCCTCTACTGGGCTTTGTCT...............................................................................................	22	2	14.00	1.50	0.50	11.00	1.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	14.00	3.00	4.50	6.00	0.50
.....................................................................TAGCCTCTGCTAGGCTTTGTCT...............................................................................................	22	2	13.50	0.00	0.00	12.50	1.00
.....................................................................TAGCCCCTACTAGGCTTTGTCT...............................................................................................	22	2	12.00	0.00	2.00	9.00	1.00
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	11.00	0.00	0.50	10.50	0.00
.....................................................................TAGCCTCTACTAGTCTTTGTCA...............................................................................................	22	2	10.00	0.00	0.00	0.00	10.00
..................................................................................................................GACATAGCCTATAAGAGGTTAGG.................................................	23	2	10.00	2.00	6.00	1.50	0.50
.....................................................................TAGCCTCTACTAGGCCTTGTCT...............................................................................................	22	2	9.50	0.50	1.50	6.50	1.00
.....................................................................GAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	9.50	0.00	0.00	8.50	1.00
.....................................................................TAGCCTCTACTAAGCTTTGTCT...............................................................................................	22	2	9.00	3.00	0.00	4.50	1.50
.....................................................................TAGCCTCTACTTGGCTTTGTCT...............................................................................................	22	2	9.00	2.00	0.00	5.50	1.50
.....................................................................TAGCCTCTACTAGACTTTGTCT...............................................................................................	22	2	9.00	2.00	0.50	4.50	2.00
.....................................................................TAGCCTCTCCTAGGCTTTGTCT...............................................................................................	22	2	8.50	0.00	0.00	6.00	2.50
.....................................................................TAGCCTCTACTAGGCTTTGGCT...............................................................................................	22	2	8.50	0.00	0.50	8.00	0.00
.....................................................................TAGCCTCTACTAGGCTTCGTCT...............................................................................................	22	2	8.00	0.00	0.00	6.50	1.50
.....................................................................TAGCCTCTAATAGGCTTTGTCT...............................................................................................	22	2	8.00	0.00	0.00	6.50	1.50
.....................................................................TGGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	8.00	1.50	0.50	5.50	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTTT...............................................................................................	22	2	8.00	1.50	1.00	4.00	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTCTA..............................................................................................	23	2	7.50	0.50	0.50	0.00	6.50
.....................................................................TAGCCTCTACTAGGCTTTCTCA...............................................................................................	22	2	7.50	0.00	0.00	0.00	7.50
.....................................................................TAGTCTCTACTAGGCTTTGTCT...............................................................................................	22	2	7.50	1.00	3.00	2.00	1.50
...................................................................................................................ACATATCCTATAAGAGGTTAGG.................................................	22	2	7.00	1.50	4.00	0.00	1.50
.....................................................................TAGCCGCTACGAGGCTTTGTCT...............................................................................................	22	2	7.00	0.00	0.00	7.00	0.00
.....................................................................TCGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	7.00	1.50	0.00	4.50	1.00
.....................................................................TAACCTCTACTAGGCTTTGTCT...............................................................................................	22	2	7.00	1.00	0.00	4.00	2.00
..................................................................................................................GACATAGCCTATAAGAGGTTAG..................................................	22	2	7.00	1.00	5.50	0.00	0.50
.....................................................................TAGCCTCTACTAGGCTCTGTCT...............................................................................................	22	2	6.50	0.00	0.50	5.00	1.00
.....................................................................TAGCCTCTACTAGCCTTTGTCT...............................................................................................	22	2	6.50	0.00	0.00	5.00	1.50
.....................................................................AAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	6.50	0.00	0.00	6.50	0.00
.....................................................................TAGCCTCTACTAGGCGTTGTCT...............................................................................................	22	2	6.50	2.00	0.00	4.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTGT...............................................................................................	22	2	6.50	2.00	1.50	1.50	1.50
.....................................................................TAGCCTCTACTAGGCTTTATCT...............................................................................................	22	2	6.00	0.00	0.50	3.50	2.00
....................................................................CTAGCCTCTACTAGGCTTTGTCT...............................................................................................	23	2	6.00	0.00	1.50	4.00	0.50
.....................................................................CAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	6.00	0.00	1.00	4.50	0.50
.....................................................................TAGCCTCTACTAGGCTGTGTCT...............................................................................................	22	2	6.00	0.00	0.00	6.00	0.00
.....................................................................TAGCGTCTACTAGGCTTTGTCT...............................................................................................	22	2	5.50	0.00	0.00	5.00	0.50
.....................................................................TAGCCTCTACTAGCCTTTGTCA...............................................................................................	22	2	5.50	0.00	0.00	0.00	5.50
......................................................................AGCCTCTACTAGGCTTTGTCT...............................................................................................	21	2	5.00	0.00	0.00	3.50	1.50
...........................................................................................GTGCA--TTCGAAAG-TCGATCAG.......................................................................	21	2	5.00	2.00	2.00	0.00	1.00
.....................................................................TAGCCTTTACTAGGCTTTGTCT...............................................................................................	22	2	5.00	0.00	0.50	4.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTCAA..............................................................................................	23	2	5.00	0.00	0.00	0.50	4.50
.....................................................................TAGCCTCTTCTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	0.00	4.00	0.50
.....................................................................TAGCCTCTACTGGGCTTTGTCA...............................................................................................	22	2	4.50	0.00	0.00	0.00	4.50
......................................................................AGCCTCTACTAGGCTTTGTCTGT.............................................................................................	23	2	4.50	0.00	3.00	1.00	0.50
.....................................................................TAGCCTCCACTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	0.00	4.00	0.50
.....................................................................TAGCCTCTACTACGCTTTGTCA...............................................................................................	22	2	4.00	0.00	0.00	0.00	4.00
...................................................................................................................ACATAGCCTATAAGATGTTAGG.................................................	22	2	4.00	1.00	1.00	0.50	1.50
.....................................................................TAGCCTCGACGAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	0.00	4.00	0.00
.....................................................................TAGCCTCTACTAGGCTTCGTCA...............................................................................................	22	2	4.00	0.00	0.00	0.50	3.50
...................................................................................................................ACATAGCCTATAAGAGGTTACG.................................................	22	2	4.00	0.50	0.50	1.50	1.50
.....................................................................TAGCCTCTATTAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	0.50	3.00	0.50
...................................................................................................................ACATAGCCTATAAGAGGGTAGG.................................................	22	2	3.50	0.00	0.00	1.50	2.00
.....................................................................TAGCCTCTCCTAGGCTTTGTCA...............................................................................................	22	2	3.50	0.00	0.00	0.00	3.50
.....................................................................TAGCATCTACTGGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	0.00	3.50	0.00
.....................................................................TACCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.50	0.50	1.00	1.50
..................................................................................................................GACATAGCCTATAAGAGGTT....................................................	20	2	3.50	1.00	2.00	0.50	0.00
.....................................................................TAGCCGCTACTAGGCTTTGTCA...............................................................................................	22	2	3.50	0.00	0.00	0.00	3.50
.....................................................................TAGCCTCTACTAGGATTTGTCA...............................................................................................	22	2	3.50	0.00	0.00	0.50	3.00
.....................................................................TATCCTCTACTAGTCTTTGTCT...............................................................................................	22	2	3.50	0.50	2.00	1.00	0.00
.....................................................................TAGCCTGTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	1.00	0.00	2.50	0.00
.....................................................................TAGCCTCTAGTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	0.00	3.50	0.00
.....................................................................TAGCCGCTACTGGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	0.00	3.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTGT.............................................................................................	24	2	3.00	1.00	1.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGTTTTGTCT...............................................................................................	22	2	3.00	0.50	0.50	1.00	1.00
...................................................................................................................ACATAGCCTATAATAGGTTAGG.................................................	22	2	3.00	0.00	2.00	0.00	1.00
.....................................................................TAGCCTCTACTAGGCTTTGCCA...............................................................................................	22	2	3.00	0.00	0.00	0.00	3.00
.....................................................................TAGCCCCTACTAGGCTTTGTCA...............................................................................................	22	2	3.00	0.00	0.00	0.00	3.00

droBip1

CGTGTGGGCGTGGCAATATGCTCTACGTTCTAAAT-C-------GA------AAATTTCCTTATAGATCTAGCCTCTACTAGGCTTTGTCTGTGTT--TTC--------GATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCAAA-AGTCATCA----------------TTAAAACGGA

Size

Hit Count

Total Norm

dp4

--------------------------------------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATCA------------------AAAGCGGA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	4382.50	145.00	786.50	3431.50	19.50
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	391.50	1.50	365.50	24.50	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGG.................................................	22	2	255.00	47.50	56.50	151.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	138.00	10.00	8.00	120.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAG..................................................	21	2	55.50	16.50	1.00	38.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	35.50	4.00	1.50	30.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGT................................................	23	2	25.50	6.50	3.00	16.00	0.00
.....................................................................TAGCCTCTACTCGGCTTTGTCT...............................................................................................	22	2	21.50	0.00	7.50	14.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTTTCT...............................................................................................	22	2	18.50	0.00	2.00	16.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTT..............................................................................................	23	2	15.50	0.00	3.00	11.00	1.50
.....................................................................TAGCATCTACTAGGCTTTGTCT...............................................................................................	22	2	14.50	0.00	6.50	8.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGT.................................................	22	2	14.50	7.50	1.00	6.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	13.50	1.50	0.50	11.50	0.00
.....................................................................TAGCCTATACTAGGCTTTGTCT...............................................................................................	22	2	11.00	0.00	5.50	5.50	0.00
.....................................................................TAACCTCTACTAGGCTTTGTCT...............................................................................................	22	2	10.50	0.50	2.00	8.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTAT...............................................................................................	22	2	10.00	0.00	5.50	4.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	9.50	1.00	1.50	7.00	0.00
.....................................................................TAGCCGCTACTAGGCTTTGTCT...............................................................................................	22	2	9.00	0.00	3.00	6.00	0.00
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	8.50	0.00	3.00	5.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	8.00	0.00	2.50	5.00	0.50
.....................................................................TAGCCTCTACCAGGCTTTGTCT...............................................................................................	22	2	7.50	0.00	1.00	6.50	0.00
.....................................................................TAGCCTCTAATAGGCTTTGTCT...............................................................................................	22	2	7.50	0.00	1.00	6.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	7.50	0.00	5.00	2.50	0.00
.....................................................................TAGCCTCTACTTGGCTTTGTCT...............................................................................................	22	2	7.50	0.00	4.00	3.50	0.00
.....................................................................TACCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	7.00	0.50	1.00	5.50	0.00
...................................................................................................................ACATAGCCTATAAGAGGTT....................................................	19	2	7.00	0.00	1.50	5.50	0.00
.....................................................................TAGCCTCTACGAGGCTTTGTCT...............................................................................................	22	2	7.00	0.00	1.50	5.50	0.00
.....................................................................TAGCCTCTACTGGGCTTTGTCT...............................................................................................	22	2	7.00	0.50	1.00	5.50	0.00
.....................................................................TAGCCTCTACTAGGCCTTGTCT...............................................................................................	22	2	7.00	0.00	2.00	5.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGG.................................................	22	2	6.50	0.00	6.00	0.50	0.00
..................................................................................................................GACATAGCCTATAAGAGGTTAG..................................................	22	2	6.00	2.00	2.00	2.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGGCT...............................................................................................	22	2	6.00	0.00	0.00	6.00	0.00
.....................................................................TAGCCTCTACTAGGCTCTGTCT...............................................................................................	22	2	6.00	0.00	0.50	5.50	0.00
.....................................................................TAGACTCTACTAGGCTTTGTCT...............................................................................................	22	2	6.00	0.00	1.50	4.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTATCT...............................................................................................	22	2	5.50	0.00	0.50	5.00	0.00
.....................................................................TAGCCTCGACTAGGCTTTGTCT...............................................................................................	22	2	5.50	0.00	1.00	4.50	0.00
.....................................................................TAGCCCCTACTAGGCTTTGTCT...............................................................................................	22	2	5.50	0.00	1.00	4.50	0.00
....................................................................CTAGCCTCTACTAGGCTTTGTCT...............................................................................................	23	2	5.00	0.00	2.00	3.00	0.00
.........................................................................CTCTACTAGGCTTTGTCT...............................................................................................	18	2	5.00	0.00	4.50	0.50	0.00
.....................................................................TAGCCTCTACTAGACTTTGTCT...............................................................................................	22	2	5.00	0.00	0.50	4.50	0.00
.....................................................................TAGCCTCTACTAGCCTTTGTCT...............................................................................................	22	2	5.00	0.00	0.50	4.50	0.00
.....................................................................TAGCCTCTACTCGGCTTTGTCA...............................................................................................	22	2	5.00	0.00	5.00	0.00	0.00
.....................................................................TAGCCTCTACTATGCTTTGTCT...............................................................................................	22	2	4.50	0.00	1.50	3.00	0.00
.....................................................................TAGCCTCTGCTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.50	1.00	3.00	0.00
.....................................................................TAGCCTCTACTACGCTTTGTCT...............................................................................................	22	2	4.50	0.00	0.50	4.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTA...................................................	20	2	4.50	1.50	0.00	3.00	0.00
.....................................................................TGGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	0.00	4.00	0.00
..................................................................................................................GACATAGCCTATAAGAGGTTAGG.................................................	23	2	4.00	0.00	2.50	1.50	0.00
.....................................................................TATCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	0.00	3.50	0.50
......................................................................AGCCTCTACTAGGCTTTGTCT...............................................................................................	21	2	4.00	1.00	1.00	2.00	0.00
.....................................................................TAGCCTCTACTAGTCTTTGTCT...............................................................................................	22	2	4.00	0.00	0.50	3.50	0.00
.....................................................................TAGCCTCTACTAAGCTTTGTCT...............................................................................................	22	2	4.00	0.00	2.00	2.00	0.00
.....................................................................TAGCCTCTATTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	1.00	2.50	0.00
.....................................................................CAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	0.50	3.00	0.00
.....................................................................TAGCCTCTCCTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	2.50	1.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTCTCT...............................................................................................	22	2	3.00	0.00	1.00	2.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTGT.............................................................................................	24	2	3.00	0.50	0.00	2.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTTT...............................................................................................	22	2	3.00	0.50	0.00	2.50	0.00
.....................................................................TAGTCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	0.00	3.00	0.00
.....................................................................TAGCCTCTTCTAGGCTTTGTCT...............................................................................................	22	2	2.50	0.00	1.50	1.00	0.00
......................................................................AGCCTCTACTAGGCTTTGTCTG..............................................................................................	22	2	2.50	0.00	1.50	1.00	0.00
.....................................................................TAGCCTCTACTAGGATTTGTCA...............................................................................................	22	2	2.50	0.00	2.00	0.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGACT...............................................................................................	22	2	2.50	0.00	0.50	2.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTC..............................................................................................	23	2	2.00	0.00	1.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGCTTCGTCT...............................................................................................	22	2	2.00	0.00	0.50	1.50	0.00
.....................................................................TAGCCTCCACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.50	0.00	1.50	0.00
.....................................................................TAGCCTCTACTAGGCTGTGTCT...............................................................................................	22	2	2.00	0.00	1.00	1.00	0.00
.....................................................................TAGCCGCTACGAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.00	2.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTA..............................................................................................	23	2	2.00	0.00	1.50	0.50	0.00
.....................................................................TAGCCTCTTCTTGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.50	1.50	0.00
.....................................................................AAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.00	2.00	0.00
.....................................................................GAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.00	2.00	0.00
.....................................................................TAGCCTCTACTAGGCCTTGTCA...............................................................................................	22	2	1.50	0.00	1.50	0.00	0.00
...................................................................................................................ACATAGACTATAAGAGGTTAGG.................................................	22	2	1.50	0.00	1.00	0.50	0.00
.....................................................................TAGCCTCGACGAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.50	1.00	0.00
.....................................................................TAGCCTCGACTGGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.00	1.50	0.00
.....................................................................TAGCCTCTAATGGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.50	1.00	0.00
.....................................................................TAGCCTCTACTAGGTTTTGTCT...............................................................................................	22	2	1.50	0.50	0.50	0.50	0.00
.....................................................................TAGCCTCTACTAGGGTTTGTCT...............................................................................................	22	2	1.50	0.00	1.00	0.50	0.00
.....................................................................TAGCATCTACTTGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	1.50	0.00	0.00
.....................................................................TAGCATCTACTGGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	1.00	0.50	0.00
.....................................................................TAGCCACTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	1.00	0.50	0.00
.....................................................................TAGCCTCTACTCGGCTTTTTCT...............................................................................................	22	2	1.50	0.00	0.00	1.50	0.00
.....................................................................TAGCCTCTACTCTGCTTTGTCT...............................................................................................	22	2	1.50	0.00	1.00	0.50	0.00
.....................................................................TAGCCTCTACTATTCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.50	1.00	0.00
.....................................................................TAGCCTCTACTTGGCTTTTTCT...............................................................................................	22	2	1.50	0.00	0.50	1.00	0.00
.....................................................................TAGCCTTTACTAGGCTTTGTCA...............................................................................................	22	2	1.50	0.00	1.50	0.00	0.00

droPer1

--------------------------------------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATCA------------------AAAGCGGA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2729.00	113.00	465.00	1747.00	390.50	13.50
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	456.50	0.50	447.50	5.00	3.50	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGG.................................................	22	2	230.50	19.50	26.50	92.00	92.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	128.00	7.00	7.00	73.00	40.00	1.00
...................................................................................................................ACATAGCCTATAAGAGGTTAG..................................................	21	2	73.50	10.00	1.00	25.00	37.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	25.00	5.50	2.00	14.50	3.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGT.................................................	22	2	18.00	8.00	0.00	2.50	7.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	15.00	1.00	0.00	8.50	5.50	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGGT................................................	23	2	14.50	1.00	0.00	6.00	7.50	0.00
.........................................................................CTCTACTAGGCTTTGTCT...............................................................................................	18	2	11.50	1.00	1.00	0.50	0.50	8.50
.....................................................................TAGCCTCTACTCGGCTTTGTCT...............................................................................................	22	2	10.00	0.00	5.00	4.00	1.00	0.00
.....................................................................TAGCATCTACTAGGCTTTGTCT...............................................................................................	22	2	10.00	0.00	3.00	3.00	4.00	0.00
.....................................................................TAGCCTCTACTATGCTTTGTCT...............................................................................................	22	2	8.50	0.00	1.00	5.50	2.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	8.00	0.00	4.00	2.00	0.50	1.50
...................................................................................................................ACATAGCCTATAAGAGGTT....................................................	19	2	7.50	1.00	0.50	2.00	4.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTT..............................................................................................	23	2	7.50	0.50	1.00	5.00	1.00	0.00
..................................................................................................................GACATAGCCTATAAGAGGTTAG..................................................	22	2	7.50	0.50	0.00	4.50	2.50	0.00
.....................................................................TAGCCGCTACTAGGCTTTGTCT...............................................................................................	22	2	7.00	0.00	0.00	5.50	1.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	7.00	0.50	1.00	4.50	0.50	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTAT...............................................................................................	22	2	6.50	0.00	1.00	4.00	1.50	0.00
.....................................................................TAGCCTCTACTCGGCTTTGTCA...............................................................................................	22	2	6.50	0.00	6.50	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	6.00	0.00	1.50	2.50	2.00	0.00
..................................................................................................................GACATAGCCTATAAGAGGTTAGG.................................................	23	2	5.50	0.50	1.00	1.50	2.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTTTCT...............................................................................................	22	2	5.50	0.00	0.50	2.50	2.50	0.00
.....................................................................TAGCCTCTACTAGGCTTCGTCT...............................................................................................	22	2	5.00	0.00	1.00	2.50	1.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTATCT...............................................................................................	22	2	5.00	0.00	1.50	3.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCCTTGTCT...............................................................................................	22	2	5.00	0.00	0.50	3.50	1.00	0.00
.....................................................................TAGCCTCTACGAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	0.00	1.50	3.00	0.00
.....................................................................TAGCCACTACTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	0.00	4.50	0.00	0.00
.....................................................................TAGCCTCTAATAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	1.50	2.50	0.50	0.00
......................................................................AGCCTCTACTAGGCTTTGTCT...............................................................................................	21	2	4.00	0.00	1.00	2.50	0.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTA..............................................................................................	23	2	4.00	0.00	2.00	1.50	0.50	0.00
.....................................................................TAGCCTCTACTGGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	0.50	2.00	1.50	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTA...................................................	20	2	4.00	0.00	0.00	2.50	1.50	0.00
.....................................................................TAGCTTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.50	0.50	1.50	1.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTTA...............................................................................................	22	2	3.50	0.00	3.50	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	3.50	0.00	1.50	1.50	0.00	0.50
.....................................................................TAGCCCCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	0.50	2.50	0.50	0.00
.....................................................................TGGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	0.00	2.50	0.00	0.50
...................................................................................................................ACATAGCCTATAAGCGGTTAGG.................................................	22	2	3.00	0.00	0.00	1.00	2.00	0.00
.....................................................................TAGCCTCTGCTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	1.50	0.50	1.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGGTAGG.................................................	22	2	3.00	0.00	0.00	0.00	3.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGGCT...............................................................................................	22	2	3.00	0.00	1.00	1.50	0.50	0.00
.....................................................................TAGCCTATACTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	1.00	1.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGCTCTGTCT...............................................................................................	22	2	3.00	0.00	0.00	1.50	1.50	0.00
.....................................................................TAGACTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	1.50	1.00	0.50	0.00
.....................................................................TAGCCTCTACTTGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	0.00	2.50	0.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTGT.............................................................................................	24	2	2.50	0.00	0.00	1.50	1.00	0.00
.....................................................................TAGCCTCTCCTAGGCTTTGTCT...............................................................................................	22	2	2.50	0.00	0.50	1.50	0.50	0.00
.....................................................................TAACCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.50	0.00	0.00	2.50	0.00	0.00
.......................................................................GCCTCTACTAGGCTTTGTCT...............................................................................................	20	2	2.50	0.00	1.50	1.00	0.00	0.00
....................................................................CTAGCCTCTACTAGGCTTTGTCT...............................................................................................	23	2	2.00	0.00	1.50	0.50	0.00	0.00
.....................................................................TAGCCTCTACTGGGCTTTGTCA...............................................................................................	22	2	2.00	0.00	1.50	0.50	0.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTATG.................................................	22	2	2.00	0.00	0.50	0.50	1.00	0.00
.....................................................................CAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.50	1.00	0.50	0.00
.....................................................................TATCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.00	2.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTGT...............................................................................................	22	2	2.00	0.00	0.00	2.00	0.00	0.00
.....................................................................TAGCCTCTTCTAGGCTTTGTCA...............................................................................................	22	2	2.00	0.00	2.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTAA...............................................................................................	22	2	2.00	0.50	1.50	0.00	0.00	0.00
.....................................................................TAGCCTCTACTACGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.50	1.50	0.00	0.00
...........................................................................................GTGCA--TTTGAAAACCCGATCAG.......................................................................	22	2	2.00	1.50	0.00	0.00	0.50	0.00
....................................................................CTAGCCTCTACTAGGCTTTGTCA...............................................................................................	23	2	2.00	0.00	2.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTGTGTCT...............................................................................................	22	2	2.00	0.00	0.50	1.00	0.50	0.00
.....................................................................TAGCCTCTACCAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.50	1.00	0.50	0.00
.....................................................................TAGCCTCTACTAGCCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.00	1.50	0.50	0.00
.....................................................................TAGCCTCGACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.50	0.50	1.00	0.00
.....................................................................TAGCCTCTACTAGTCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.50	0.50	1.00	0.00
.....................................................................TAGCCTCTACTAAGCTTTGTCT...............................................................................................	22	2	2.00	0.00	1.00	1.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTCTCT...............................................................................................	22	2	1.50	0.50	0.00	1.00	0.00	0.00
.....................................................................TAGCCTCTTCTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.50	0.00	1.00	0.00
........................................................................CCTCTACTAGGCTTTGTCT...............................................................................................	19	2	1.50	1.00	0.00	0.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTGGTCT...............................................................................................	22	2	1.50	0.00	0.00	0.00	1.50	0.00
.....................................................................TAGGCTCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.00	1.00	0.50	0.00
.....................................................................TAGCCTCTACTAGCCTTTGTC................................................................................................	21	2	1.50	0.00	0.00	0.50	1.00	0.00
.....................................................................TAGCATATACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.50	0.50	0.50	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGC.................................................	22	2	1.50	0.00	0.00	1.00	0.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTA................................................................................................	21	2	1.50	0.00	0.00	0.50	1.00	0.00
.....................................................................TAGCCTCTACTAGGATTTGTCA...............................................................................................	22	2	1.50	0.00	1.50	0.00	0.00	0.00
...................................................................................................................AAATAGCCTATAAGAGGTTAG..................................................	21	2	1.50	0.00	0.00	0.50	1.00	0.00
.....................................................................TAGCCTCTACTCGGCTTTGCCT...............................................................................................	22	2	1.50	0.00	0.50	0.50	0.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTTT...............................................................................................	22	2	1.50	0.00	0.00	1.50	0.00	0.00
.....................................................................TAGCAGCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.00	1.00	0.50	0.00
.....................................................................TAGCCTCTCCTAGCCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.00	1.50	0.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTACG.................................................	22	2	1.50	0.00	0.00	1.00	0.50	0.00
.....................................................................TAGCATCTACTGGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.00	1.00	0.50	0.00
.....................................................................TAGCCTCTACTAGGCGTTGTCT...............................................................................................	22	2	1.50	0.00	0.00	0.50	1.00	0.00
.....................................................................TAGCATCTACTAGGCTTTGTCA...............................................................................................	22	2	1.50	0.00	1.50	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTTTC................................................................................................	21	2	1.50	0.00	0.00	0.00	1.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTCTC................................................................................................	21	2	1.50	0.00	0.00	0.50	1.00	0.00
.....................................................................AAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.00	1.50	0.00	0.00
...................................................................................................................ACATAGCCTATAAGTGGTTAGG.................................................	22	2	1.50	0.00	0.00	0.50	1.00	0.00
...................................................................................................................ACATAGCCTATATGAGGTTAGG.................................................	22	2	1.50	0.00	0.00	0.00	1.50	0.00

droWil1

TT------------------------TTCCTTTAT-G-------TAATATTAATATATCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGGA------TTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGAGAAAATACAACA--------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	6052.00	116.50	5287.00	486.50	162.00
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	5193.50	2.00	5180.50	11.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGG.................................................	22	2	658.50	25.50	378.50	249.50	5.00
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	267.50	6.00	242.00	16.50	3.00
...................................................................................................................ACATAGCCTATGAGAGGTTAG..................................................	21	2	163.50	20.50	83.50	55.50	4.00
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	124.50	5.00	112.50	6.00	1.00
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	32.50	0.00	11.00	2.00	19.50
.....................................................................TAGCCTCTACTAGGCTTTGTCTA..............................................................................................	23	2	28.50	0.00	28.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	25.50	0.00	24.50	0.00	1.00
...................................................................................................................ACATAGCCTATGAGAGGTTA...................................................	20	2	22.00	1.00	12.50	8.50	0.00
...................................................................................................................ACATAGCCTATGAGAGGTT....................................................	19	2	20.00	2.50	5.00	12.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	19.50	1.00	10.50	5.00	3.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGGT................................................	23	2	18.50	2.00	12.00	4.50	0.00
.........................................................................CTCTACTAGGCTTTGTCT...............................................................................................	18	2	18.50	3.50	2.00	3.00	10.00
.....................................................................TAGCCTCTACTAGGCTTTGTCAA..............................................................................................	23	2	18.00	0.00	18.00	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGT.................................................	22	2	16.50	4.00	3.00	9.50	0.00
.....................................................................TATCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	15.50	0.00	9.50	2.50	3.50
....................................................................CTAGCCTCTACTAGGCTTTGTCT...............................................................................................	23	2	14.00	0.00	12.00	2.00	0.00
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	13.50	0.50	11.00	2.00	0.00
......................................................................AGCCTCTACTAGGCTTTGTCT...............................................................................................	21	2	12.00	0.00	11.00	0.50	0.50
.....................................................................TATCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	11.50	0.00	11.50	0.00	0.00
.....................................................................TAGCATCTACTAGGCTTTGTCA...............................................................................................	22	2	11.00	0.00	11.00	0.00	0.00
.....................................................................TAGACTCTACTAGGCTTTGTCT...............................................................................................	22	2	11.00	0.00	9.50	1.50	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGA.................................................	22	2	10.50	0.00	6.50	4.00	0.00
..................................................................................................................GACATAGCCTATGAGAGGTTAGG.................................................	23	2	10.00	0.50	5.50	4.00	0.00
.....................................................................TAGACTCTACTAGGCTTTGTCA...............................................................................................	22	2	9.50	0.00	9.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTAA.............................................................................................	24	2	9.50	0.00	9.50	0.00	0.00
.....................................................................TAGCCTCTACTATGCTTTGTCT...............................................................................................	22	2	9.50	0.00	8.50	1.00	0.00
.....................................................................TAGCCTCTAATAGGCTTTGTCT...............................................................................................	22	2	9.50	0.00	6.50	3.00	0.00
.....................................................................TACCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	9.00	0.00	6.50	0.50	2.00
........................................................................CCTCTACTAGGCTTTGTCT...............................................................................................	19	2	9.00	0.50	0.50	3.50	4.50
.....................................................................TAGCCTCTACTAGTCTTTGTCT...............................................................................................	22	2	8.50	0.00	6.50	1.00	1.00
.....................................................................TAGCCTCTACTAGGCTTTTTCT...............................................................................................	22	2	8.50	0.00	8.50	0.00	0.00
....................................................................CTAGCCTCTACTAGGCTTTGTCA...............................................................................................	23	2	8.00	0.00	8.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGATTTGTCA...............................................................................................	22	2	8.00	0.00	8.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTAA...............................................................................................	22	2	7.50	0.00	7.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	7.50	0.50	5.50	1.00	0.50
.....................................................................TAGCCCCTACTAGGCTTTGTCT...............................................................................................	22	2	7.50	0.00	7.00	0.50	0.00
..................................................................................................................GACATAGCCTATGAGAGGTTAG..................................................	22	2	7.50	1.00	5.00	1.50	0.00
.....................................................................TAGCCTCTACTAGGCTTTTTCA...............................................................................................	22	2	7.50	0.00	7.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCCTTGTCA...............................................................................................	22	2	7.00	0.00	7.00	0.00	0.00
.....................................................................TAGCCCCTACTAGGCTTTGTCA...............................................................................................	22	2	7.00	0.00	7.00	0.00	0.00
.....................................................................TAGCATCTACTAGGCTTTGTCT...............................................................................................	22	2	6.50	0.00	6.00	0.50	0.00
.....................................................................TAGCCTCTACCAGGCTTTGTCT...............................................................................................	22	2	6.50	0.00	5.50	1.00	0.00
.....................................................................TAGCCTCTACTAGGCCTTGTCT...............................................................................................	22	2	6.00	0.50	4.50	0.50	0.50
.....................................................................TAGCCTCTACTGGGCTTTGTCT...............................................................................................	22	2	6.00	0.00	5.00	0.50	0.50
.....................................................................TAGCCTCTACTAGTCTTTGTCA...............................................................................................	22	2	6.00	0.00	6.00	0.00	0.00
.....................................................................CAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	6.00	0.00	5.00	0.50	0.50
.....................................................................TAGCCTCTACTAGGCTTTGCCA...............................................................................................	22	2	5.50	0.00	5.00	0.50	0.00
.....................................................................TAGCCTCCACTAGGCTTTGTCT...............................................................................................	22	2	5.50	0.00	4.00	1.50	0.00
.....................................................................TAGCCTCTACTAGGCTCTGTCT...............................................................................................	22	2	5.50	0.00	4.00	1.50	0.00
.....................................................................TAGCxxCTACTAGGCTTTGTCT...............................................................................................	20	2	5.50	0.00	5.50	0.00	0.00
.....................................................................TAGCCTCTACTATGCTTTGTCA...............................................................................................	22	2	5.50	0.00	5.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTATCT...............................................................................................	22	2	5.00	0.00	4.00	1.00	0.00
.....................................................................TCGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	5.00	0.00	5.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTCGTCT...............................................................................................	22	2	5.00	0.00	3.50	1.50	0.00
.....................................................................TAGCCTATACTAGGCTTTGTCT...............................................................................................	22	2	5.00	0.00	5.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTT..............................................................................................	23	2	4.50	0.50	2.00	0.50	1.50
.....................................................................TAGCCTCTCCTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	3.50	1.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTAT...............................................................................................	22	2	4.50	0.00	3.00	1.50	0.00
.....................................................................TAGCCTTTACTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	4.50	0.00	0.00
.....................................................................TAGCCTCTACCAGGCTTTGTCA...............................................................................................	22	2	4.50	0.00	4.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCAT..............................................................................................	23	2	4.50	0.00	4.50	0.00	0.00
.....................................................................TAGCTTCTACTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	3.50	1.00	0.00
.....................................................................TAGCCTCTACTAxGCTTTGTCT...............................................................................................	21	2	4.00	0.00	0.50	2.50	1.00
.....................................................................TAGCCTCTACTAGGCTTTATCA...............................................................................................	22	2	4.00	0.00	4.00	0.00	0.00
.....................................................................TAACCTCTACTAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	2.00	1.50	0.50
.....................................................................TAGCCTCTACTAGGCTCTGTCA...............................................................................................	22	2	4.00	0.00	4.00	0.00	0.00
.....................................................................TAGCCTCCACTAGGCTTTGTCA...............................................................................................	22	2	4.00	0.00	4.00	0.00	0.00
.....................................................................TAGTCTCTACTAGGCTTTGTCA...............................................................................................	22	2	4.00	0.00	4.00	0.00	0.00
.....................................................................TAGCCTATACTAGGCTTTGTCA...............................................................................................	22	2	4.00	0.00	4.00	0.00	0.00
.....................................................................CAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	4.00	0.00	4.00	0.00	0.00
.....................................................................TAGCCTCTGCTAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	4.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGTTTTGTCT...............................................................................................	22	2	3.50	0.00	2.50	1.00	0.00
.....................................................................TAGTCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	2.00	1.50	0.00
.....................................................................TGGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	2.50	1.00	0.00
.....................................................................TAGCCTCTACTAGACTTTGTCT...............................................................................................	22	2	3.50	0.00	3.00	0.50	0.00
.....................................................................TAGCCTCTAATAGGCTTTGTCA...............................................................................................	22	2	3.50	0.00	3.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTCTCA...............................................................................................	22	2	3.50	0.00	3.50	0.00	0.00
.....................................................................TAGxCTCTACTAGGCTTTGTCT...............................................................................................	21	2	3.50	0.00	0.50	3.00	0.00
......................................................................AGCCTCTACTAGGCTTTGTCA...............................................................................................	21	2	3.00	0.00	3.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGGCT...............................................................................................	22	2	3.00	0.00	2.50	0.00	0.50
...................................................................................................................ACATAGCCTATGAGAGGTTAGGAA...............................................	24	2	3.00	0.00	3.00	0.00	0.00
.....................................................................TAGCCTCTACTAGCCTTTGTCT...............................................................................................	22	2	3.00	0.00	2.50	0.50	0.00
.....................................................................TCGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	3.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTCGTCA...............................................................................................	22	2	3.00	0.00	3.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTTA...............................................................................................	22	2	3.00	0.00	3.00	0.00	0.00
.....................................................................TAGCCTCTATTAGGCTTTGTCA...............................................................................................	22	2	3.00	0.00	3.00	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGTTTAGG.................................................	22	2	3.00	0.00	0.00	3.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTCTCT...............................................................................................	22	2	2.50	0.00	2.50	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTCGG.................................................	22	2	2.50	0.00	2.00	0.50	0.00
..................................................................................................................GACATAGCCTATGAGAGGTT....................................................	20	2	2.50	0.00	0.50	2.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTCAGG.................................................	22	2	2.50	0.00	2.00	0.50	0.00
...................................................................................................................ACATAGCCTATGAGCGGTTAGG.................................................	22	2	2.50	0.00	1.00	1.50	0.00
.....................................................................TAGCCTCTACTAGGCxTTGTCA...............................................................................................	21	2	2.50	0.00	2.50	0.00	0.00
.....................................................................TAGCCTCTACTAAGCTTTGTCT...............................................................................................	22	2	2.50	0.00	1.00	1.50	0.00
.........................................................................CTCTACTxGGCTTTGGCTGT.............................................................................................	19	2	2.50	0.00	2.50	0.00	0.00
.....................................................................TAGCGTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.50	0.00	2.00	0.50	0.00
.....................................................................AAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.50	0.00	2.50	0.00	0.00
.....................................................................TAGCTTCTACTAGGCTTTGTCA...............................................................................................	22	2	2.50	0.00	2.50	0.00	0.00
.....................................................................TAGCCTCTACTGGGCTTTGTCA...............................................................................................	22	2	2.50	0.00	2.50	0.00	0.00

droVir3

GC------------------------GTCCGAC-------------------AAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGATAT-ACGGTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGGGAC-AAGCAGCG------------------AGGGCG--	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	641.00	113.50	328.00	73.50	76.00	50.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGG.................................................	22	2	622.00	230.00	342.50	46.50	2.50	0.50
...................................................................................................................ACATAGCCTATGAGAGGTTAG..................................................	21	2	154.00	73.00	71.00	7.50	2.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	56.00	1.50	2.50	51.50	0.00	0.50
...................................................................................................................ACATAGCCTATGAGAGGTTAGGT................................................	23	2	39.00	17.50	16.00	5.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	26.00	1.50	1.50	2.00	10.50	10.50
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	24.00	2.00	4.50	10.50	5.00	2.00
...................................................................................................................ACATAGCCTATGAGAGGTTA...................................................	20	2	16.50	2.50	13.50	0.50	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGT.................................................	22	2	16.50	13.00	2.00	1.50	0.00	0.00
.........................................................................CTCTACTAGGCTTTGTCT...............................................................................................	18	2	13.50	0.00	0.00	1.00	5.50	7.00
...........................................................................................GTGCA--TTCGATAT-ACGGTCAG.......................................................................	21	2	12.00	0.50	0.50	1.50	4.50	5.00
...................................................................................................................ACATAGCCTATGAGAGGTT....................................................	19	2	11.50	4.00	7.00	0.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTCC.............................................................................................	24	2	9.50	1.00	0.00	0.00	7.50	1.00
..................................................................................................................GACATAGCCTATGAGAGGTTAGG.................................................	23	2	8.50	3.00	4.00	1.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	8.50	1.50	5.50	1.00	0.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	7.50	0.00	0.00	1.50	4.00	2.00
..................................................................................................................GACATAGCCTATGAGAGGTTAG..................................................	22	2	6.00	4.00	2.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTA..............................................................................................	23	2	5.50	0.00	0.50	5.00	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTATG.................................................	22	2	5.50	0.50	5.00	0.00	0.00	0.00
.....................................................................TAGCCTATACTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	4.00	0.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTT..............................................................................................	23	2	4.50	1.00	1.00	1.50	1.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGA.................................................	22	2	4.50	3.00	1.00	0.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTTTCT...............................................................................................	22	2	4.00	0.00	1.00	3.00	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTACG.................................................	22	2	4.00	0.00	3.00	1.00	0.00	0.00
.....................................................................TAGCCTCTCCTAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	2.50	0.50	1.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGC.................................................	22	2	4.00	0.50	3.50	0.00	0.00	0.00
.....................................................................TATCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	0.50	0.00	1.00	1.50
.....................................................................TAGCCTCTACGAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	2.50	0.50	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTGAGG.................................................	22	2	3.00	0.00	3.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	3.00	1.00	1.50	0.00	0.00	0.50
...................................................................................................................ACATAGCCTATGAGCGGTTAGG.................................................	22	2	2.50	0.50	1.50	0.50	0.00	0.00
.........................................................................................................................CCTATGAGAGGTTAGG.................................................	16	2	2.50	0.00	2.50	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCAA..............................................................................................	23	2	2.50	0.00	0.00	2.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTGT.............................................................................................	24	2	2.50	1.50	0.50	0.50	0.00	0.00
.....................................................................TAGCCTCTACTAGCCTTTGTCT...............................................................................................	22	2	2.50	0.00	2.00	0.50	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTCAGG.................................................	22	2	2.00	1.00	1.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTCGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	1.00	1.00	0.00	0.00
...................................................................................................................ACATAGCATATGAGAGGTTAGG.................................................	22	2	2.00	0.00	1.50	0.50	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGGTAGG.................................................	22	2	2.00	0.50	1.50	0.00	0.00	0.00
..........................................................................TCTACTAGGCTTTGTCTG..............................................................................................	18	2	2.00	0.00	0.00	0.00	1.50	0.50
...................................................................................................................ACATACCCTATGAGAGGTTAGG.................................................	22	2	2.00	0.00	1.50	0.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	2.00	0.00	2.00	0.00	0.00	0.00
...................................................................................................................ACATATCCTATGAGAGGTTAGG.................................................	22	2	2.00	1.00	0.50	0.50	0.00	0.00
........................................................................CCTCTACTAGGCTTTGTCT...............................................................................................	19	2	2.00	0.00	0.50	0.50	0.50	0.50
......................................................................AGCCTCTACTAGGCTTTGTCT...............................................................................................	21	2	2.00	0.00	2.00	0.00	0.00	0.00
.....................................................................TACCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.00	0.00	0.00	0.50	0.50	1.00
.....................................................................TAGCCTCTACTAGACTTTGTCT...............................................................................................	22	2	1.50	0.50	0.50	0.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	1.50	0.00	1.00	0.50	0.00	0.00
...................................................................................................................ACATAGCCTATGCGAGGTTAGG.................................................	22	2	1.50	0.00	1.50	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGGCT...............................................................................................	22	2	1.50	0.00	0.50	0.00	1.00	0.00
.....................................................................TAGCCTCTACTAGGTTTTGTCT...............................................................................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGGTC...............................................	24	2	1.50	0.50	0.00	1.00	0.00	0.00
...................................................................................................................ACATAGCCTCTGAGAGGTTAGG.................................................	22	2	1.50	0.00	1.00	0.50	0.00	0.00
..................................................................................................................GACATAGCCTATGAGAGGTT....................................................	20	2	1.50	0.50	1.00	0.00	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGGC................................................	23	2	1.50	0.00	1.50	0.00	0.00	0.00
.....................................................................TAGCCGCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.50	0.50	0.50	0.00	0.00
.....................................................................TAGCCTCTACTGGGCTTTGTCT...............................................................................................	22	2	1.50	0.50	1.00	0.00	0.00	0.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGG.................................................	22	2	1.50	0.00	1.00	0.00	0.50	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGGA................................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTAA.............................................................................................	24	2	1.50	0.00	0.00	1.50	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAAG.................................................	22	2	1.50	0.50	0.00	1.00	0.00	0.00
.....................................................................TAGCCTCTACCAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	1.00	0.50	0.00	0.00
...................................................................................................................ACATAGCCTATGAGAAGTTAGG.................................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
.....................................................................GAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	0.00	0.50	1.00	0.00	0.00
...................................................................................................................ACATAGCCTATGTGAGGTTAGG.................................................	22	2	1.50	0.00	1.50	0.00	0.00	0.00

droMoj3

AT------------------------TTTTTTTTGCG-------GT------GCATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGATAT-AAGATCAGACATAGCCTATGAGAGGTTAGGTGTAGCAAGGGGTCA-AACAGCA------------------GA----GA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2979.00	737.50	333.50	422.00	1486.00
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	1733.00	66.00	3.50	5.00	1658.50
...................................................................................................................ACATAGCCTATGAGAGGTTAGG.................................................	22	2	1287.00	253.00	396.00	260.50	377.50
...................................................................................................................ACATAGCCTATGAGAGGTTAG..................................................	21	2	299.50	101.00	97.50	77.00	24.00
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	144.50	62.50	27.00	31.00	24.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGGT................................................	23	2	74.50	30.50	20.50	11.00	12.50
...................................................................................................................ACATAGCCTATGAGAGGTT....................................................	19	2	65.50	20.00	25.50	16.50	3.50
...................................................................................................................ACATAGCCTATGAGAGGTTA...................................................	20	2	52.50	6.00	22.50	18.00	6.00
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	44.50	37.50	2.50	1.00	3.50
...................................................................................................................ACATAGCCTATGAGAGGTTAGT.................................................	22	2	40.50	30.50	4.00	2.50	3.50
.....................................................................TAGCCTCTACTCGGCTTTGTCT...............................................................................................	22	2	38.00	0.00	0.50	14.50	23.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTC..............................................................................................	23	2	36.50	9.50	5.00	4.50	17.50
.....................................................................TAGCCTCTACTCGGCTTTGTCA...............................................................................................	22	2	23.00	0.00	0.00	1.00	22.00
..................................................................................................................GACATAGCCTATGAGAGGTTAGG.................................................	23	2	21.50	8.00	3.00	2.00	8.50
.....................................................................TAGCCTCTACTAGGCTTTTTCT...............................................................................................	22	2	21.50	2.00	2.00	12.50	5.00
..................................................................................................................GACATAGCCTATGAGAGGTTAG..................................................	22	2	20.00	8.50	5.50	2.00	4.00
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	19.50	1.00	0.00	0.50	18.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	13.50	3.50	5.50	3.00	1.50
...................................................................................................................ACATAGCCTATGAGCGGTTAGG.................................................	22	2	12.00	0.00	4.00	5.50	2.50
...................................................................................................................ACATAGCCTATGAGAGGTTATG.................................................	22	2	10.50	0.00	4.00	6.00	0.50
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	10.00	0.50	0.00	0.00	9.50
.....................................................................TAGCCTCTACTAGGCTTTGTCTA..............................................................................................	23	2	9.50	2.00	1.00	0.50	6.00
.....................................................................TAGCATCTACTAGGCTTTGTCA...............................................................................................	22	2	9.50	0.00	0.00	0.00	9.50
...................................................................................................................ACATAGCCTATGAGAGGT.....................................................	18	2	9.50	0.50	6.00	3.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGGA................................................	23	2	9.50	1.00	3.50	1.50	3.50
.....................................................................TAGCATCTACTAGGCTTTGTCT...............................................................................................	22	2	9.00	0.00	1.00	0.00	8.00
....................................................................................................................CATAGCCTATGAGAGGTTAGG.................................................	21	2	8.50	2.00	4.00	1.50	1.00
...................................................................................................................ACATAGCCTATAAGAGGTTAGG.................................................	22	2	7.50	0.00	0.50	3.00	4.00
.....................................................................TAGCCGCTACTAGGCTTTGTCT...............................................................................................	22	2	7.00	0.00	0.50	3.00	3.50
.....................................................................TAGCCTCTACCAGGCTTTGTCT...............................................................................................	22	2	7.00	0.50	2.50	2.50	1.50
...................................................................................................................ACATAGCCTATGAGAGGTTAGA.................................................	22	2	6.50	1.00	0.00	3.00	2.50
....................................................................CTAGCCTCTACTAGGCTTTGTCT...............................................................................................	23	2	6.50	0.50	0.50	0.50	5.00
...................................................................................................................ACATAGCCTATGAGAGGTTCGG.................................................	22	2	6.00	0.50	0.50	2.50	2.50
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	6.00	1.50	0.50	0.50	3.50
...........................................................................................GTGCA--TTTGATAT-AAGATCAG.......................................................................	21	2	6.00	1.50	0.00	0.50	4.00
..................................................................................................................GACATAGCCTATGAGAGGTT....................................................	20	2	5.50	4.00	0.50	1.00	0.00
.....................................................................TAGCCTCTACTGGGCTTTGTCT...............................................................................................	22	2	5.50	0.50	1.00	0.50	3.50
.....................................................................TAGCCTCTACTATGCTTTGTCT...............................................................................................	22	2	5.50	0.00	1.00	3.00	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTAT...............................................................................................	22	2	5.00	0.00	0.00	0.00	5.00
...................................................................................................................ACATAGCCTATGTGAGGTTAGG.................................................	22	2	4.50	0.00	2.50	2.00	0.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGGC................................................	23	2	4.50	2.50	1.00	1.00	0.00
.....................................................................TAGCCTCTGCTAGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	0.00	0.00	4.50
.....................................................................TAGCCTATACTAGGCTTTGTCT...............................................................................................	22	2	4.50	1.50	1.00	0.00	2.00
.....................................................................TAGCCCCTACTAGGCTTTGTCT...............................................................................................	22	2	4.50	1.00	1.00	0.50	2.00
...................................................................................................................ACATAGCCTATGAGGGGTTAGG.................................................	22	2	4.50	0.50	1.00	1.50	1.50
.....................................................................TAGCCTCTACTAGGCTTTATCA...............................................................................................	22	2	4.50	0.50	0.00	0.00	4.00
...................................................................................................................ACATAGCCTATGAGAGGTTACG.................................................	22	2	4.50	0.50	1.50	0.50	2.00
.....................................................................TAGCCTCTACTAGGCGTTGTCT...............................................................................................	22	2	4.50	0.50	1.50	0.00	2.50
.....................................................................TAGCCTCTACTTGGCTTTGTCT...............................................................................................	22	2	4.50	0.00	0.50	1.00	3.00
.....................................................................TAGCCTCTACTAGGCTTTGTCAA..............................................................................................	23	2	4.50	0.00	0.50	0.00	4.00
.....................................................................CAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	4.00	0.00	0.00	1.00	3.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGC.................................................	22	2	4.00	2.00	2.00	0.00	0.00
....................................................................CTAGCCTCTACTAGGCTTTGTCA...............................................................................................	23	2	4.00	0.00	0.00	0.00	4.00
...................................................................................................................ACATAGCCTATGAGAGGCTAGG.................................................	22	2	4.00	0.00	1.50	0.00	2.50
.....................................................................TAGCCTCTACGAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	1.00	1.00	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTTT...............................................................................................	22	2	3.50	0.00	0.50	1.00	2.00
.....................................................................TAGCCTCTACTAGGCTTTTTCA...............................................................................................	22	2	3.50	0.00	0.00	0.00	3.50
.....................................................................TGGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	0.00	0.50	1.50	1.50
.........................................................................CTCTACTAGGCTTTGTCT...............................................................................................	18	2	3.50	0.00	0.00	0.00	3.50
.....................................................................TAGCCTCTACTAGGCTTTGTCTT..............................................................................................	23	2	3.50	0.50	0.50	2.00	0.50
...................................................................................................................ACATAGCCTATGCGAGGTTAGG.................................................	22	2	3.50	0.00	0.50	2.00	1.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGGTT...............................................	24	2	3.50	1.50	1.50	0.50	0.00
.........................................................................CTCTACTAGGCTTTGTCA...............................................................................................	18	2	3.50	0.00	0.00	0.00	3.50
......................................................................AGCCTCTACTAGGCTTTGTCTG..............................................................................................	22	2	3.50	0.50	1.50	1.00	0.50
......................................................................AGCCTCTACTAGGCTTTGTCT...............................................................................................	21	2	3.50	0.00	0.00	0.00	3.50
...................................................................................................................ACATAGCCTATGAGAGGGTAGG.................................................	22	2	3.50	0.00	1.50	0.50	1.50
.....................................................................TAGCCTCTACTAGGCTTTCTCT...............................................................................................	22	2	3.00	0.50	2.50	0.00	0.00
.....................................................................TAGCCTCTACTAGTCTTTGTCT...............................................................................................	22	2	3.00	1.00	1.00	0.50	0.50
.....................................................................TAGCCTCTACTAGGATTTGTCA...............................................................................................	22	2	3.00	0.00	0.00	0.00	3.00
.....................................................................TAGCCTCTAATAGGCTTTGTCT...............................................................................................	22	2	3.00	0.00	1.00	0.00	2.00
.....................................................................TAGCCTCTACTCGGCTTTGTCC...............................................................................................	22	2	3.00	0.00	0.00	0.00	3.00
.....................................................................TAGCCTCTACTAGGCTTTGCCA...............................................................................................	22	2	3.00	0.00	0.00	0.00	3.00
...................................................................................................................ACATAGACTATGAGAGGTTAGG.................................................	22	2	3.00	0.00	0.50	0.00	2.50
...................................................................................................................ACATAGCCTATGAGAGGTTAGGTC...............................................	24	2	3.00	1.50	1.00	0.50	0.00
...................................................................................................................ACATAGCCTCTGAGAGGTTAGG.................................................	22	2	3.00	0.00	1.00	1.50	0.50
.......................................................................GCCTCTACTAGGCTTTGTCA...............................................................................................	20	2	3.00	0.00	0.00	0.00	3.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTCC.............................................................................................	24	2	3.00	2.50	0.50	0.00	0.00
.....................................................................TAGCCTCTACTAGGCTCTGTCT...............................................................................................	22	2	3.00	0.00	0.50	1.00	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTTA...............................................................................................	22	2	3.00	0.50	0.00	0.00	2.50
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	3.00	0.00	0.00	0.00	3.00
.....................................................................TAGCCTCTGCTAGGCTTTGTCA...............................................................................................	22	2	3.00	0.00	0.00	0.00	3.00
..................................................................................................................GACATAGCCTATGAGAGGTTA...................................................	21	2	3.00	0.00	0.00	0.50	2.50
..................................................................................................................GACATAGCCTATGAGAGGTTAGGT................................................	24	2	2.50	1.00	0.00	0.00	1.50
...................................................................................................................ACATAGCATATGAGAGGTTAGG.................................................	22	2	2.50	1.00	0.50	0.00	1.00
.....................................................................TAGCCTCTACTAGGCTTCGTCA...............................................................................................	22	2	2.50	0.00	0.00	0.00	2.50
...................................................................................................................ACATAGCCTATGAGTGGTTAGG.................................................	22	2	2.50	0.00	1.00	0.50	1.00
.....................................................................TAGCCTCTACTAGGCTTTGGCT...............................................................................................	22	2	2.50	0.00	0.00	0.50	2.00
.....................................................................TAGCCTCTACTAGGCCTTGTCT...............................................................................................	22	2	2.50	0.00	0.50	1.00	1.00
...................................................................................................................ACATAGCCTATGAGAGGTTAAG.................................................	22	2	2.50	0.00	0.00	1.00	1.50
.....................................................................TAACCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.50	0.00	0.00	0.50	2.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTCT.............................................................................................	24	2	2.50	1.50	0.00	0.00	1.00
.....................................................................TAGCCTCTACTACGCTTTGTCT...............................................................................................	22	2	2.50	0.00	0.50	1.00	1.00
.....................................................................TAGCCTCTACTAGGCTTCGTCT...............................................................................................	22	2	2.50	1.00	0.50	0.00	1.00
...................................................................................................................ACATAGCCTATGGGAGGTTAGG.................................................	22	2	2.50	0.00	1.50	0.50	0.50
...................................................................................................................ACATAGCCTATGAGAGGTTGGG.................................................	22	2	2.50	0.00	1.00	1.50	0.00
...................................................................................................................ACAGAGCCTATGAGAGGTTAGG.................................................	22	2	2.50	0.00	2.00	0.00	0.50
.....................................................................TAGCCTCTATTAGGCTTTGTCT...............................................................................................	22	2	2.50	0.00	0.50	0.00	2.00
.....................................................................TAGCCTCTACTAAGCTTTGTCT...............................................................................................	22	2	2.50	0.00	0.50	1.00	1.00
.....................................................................TAGCCTCTACTAGGCCTTGTCA...............................................................................................	22	2	2.00	0.50	0.00	0.00	1.50
...............................................................................................................TCAGACATAGCCTATGAGAGGT.....................................................	22	2	2.00	1.50	0.00	0.00	0.50
.....................................................................TAGCCCCTACTAGGCTTTGTCA...............................................................................................	22	2	2.00	0.00	0.00	0.00	2.00

droGri2

--------------------------------------------------------TTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCACTTTTTCAAT-TCAATCAGACATAGCCTATGAGAGGTTAGGTGTACAAATGGATCAAAGCAACAAGGCTGCTGTCGGGGACTAAAAATGA	Size	Hit Count	Total Norm	V109 Male body
.....................................................................TAGCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	1741.00	1741.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGG.................................................	22	2	238.50	238.50
.....................................................................TAGCCTCTACTAGGCTTTGTC................................................................................................	21	2	198.00	198.00
.....................................................................TAGCCTCTACTAGGCTTTGT.................................................................................................	20	2	135.00	135.00
...................................................................................................................ACATAGCCTATGAGAGGTTAG..................................................	21	2	110.00	110.00
...................................................................................................................ACATAGCCTATGAGAGGTT....................................................	19	2	31.00	31.00
.....................................................................TAGCCTCTACTAGGCTTCGTCT...............................................................................................	22	2	20.50	20.50
.....................................................................TAGCCTCTACTAGGCTTAGTCT...............................................................................................	22	2	16.00	16.00
...................................................................................................................ACATAGCCTATGAGAGGTTAGGT................................................	23	2	13.50	13.50
.....................................................................TAGCCTCTACTAGGCTTGGTCT...............................................................................................	22	2	11.50	11.50
.....................................................................TAGCCTATACTAGGCTTTGTCT...............................................................................................	22	2	10.00	10.00
...................................................................................................................ACATAGCCTATGAGAGGTTA...................................................	20	2	9.50	9.50
.....................................................................TAGCCTCTACTAGGCTTTGTCA...............................................................................................	22	2	7.50	7.50
...................................................................................................................ACATAGCCTATGAGAGGTTAGT.................................................	22	2	7.50	7.50
.....................................................................TAACCTCTACTAGGCTTTGTCT...............................................................................................	22	2	6.00	6.00
.....................................................................TAGCCTCTCCTAGGCTTTGTCT...............................................................................................	22	2	5.50	5.50
.....................................................................TACCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	4.50	4.50
.....................................................................TAGCCTCTTCTAGGCTTTGTCT...............................................................................................	22	2	4.00	4.00
..................................................................................................................GACATAGCCTATGAGAGGTTAGG.................................................	23	2	4.00	4.00
.....................................................................TAGCCTCTACTAGGCTTTGTCG...............................................................................................	22	2	3.50	3.50
.....................................................................TAGCCCCTACTAGGCTTTGTCT...............................................................................................	22	2	3.50	3.50
.....................................................................TAGCCTCTACTAGGCCTTGTCT...............................................................................................	22	2	3.50	3.50
...................................................................................................................ACATAGCCTATGAGAGGCTAGG.................................................	22	2	3.00	3.00
...................................................................................................................ACATAGCCTATGAGAGGGTAGG.................................................	22	2	3.00	3.00
.....................................................................TAGCCTCTACCAGGCTTTGTCT...............................................................................................	22	2	2.50	2.50
.....................................................................TATCCTCTACTAGGCTTTGTCT...............................................................................................	22	2	2.50	2.50
.....................................................................TAGCCACTACTAGGCTTTGTCT...............................................................................................	22	2	2.50	2.50
.....................................................................TAGCCTCCACTAGGCTTTGTCT...............................................................................................	22	2	2.50	2.50
.....................................................................TAGCCTCTACTAGGCTTTGCCT...............................................................................................	22	2	2.50	2.50
..................................................................................................................GACATAGCCTATGAGAGGTTAG..................................................	22	2	2.50	2.50
.....................................................................TAGCCTCTACTAGGTTTTGTCT...............................................................................................	22	2	2.00	2.00
.....................................................................TAGCCTCTACTAGGATTTGTCT...............................................................................................	22	2	2.00	2.00
...................................................................................................................ACATAGCCTATGAGAGGCTAG..................................................	21	2	2.00	2.00
.....................................................................TAGCCTCTACTCGGCTTTGTCT...............................................................................................	22	2	2.00	2.00
.....................................................................TAGCCTCTGCTAGGCTTTGTCT...............................................................................................	22	2	2.00	2.00
.....................................................................TAGCCTCTACTAGGCTTTGTCTG..............................................................................................	23	2	2.00	2.00
.....................................................................TAGCCTCTACTAGGCTCTGTCT...............................................................................................	22	2	2.00	2.00
.....................................................................TAGCCTTTACTAGGCTTTGTCT...............................................................................................	22	2	2.00	2.00
.....................................................................TAGCCTCTACTAGGCTTAGTC................................................................................................	21	2	1.50	1.50
.....................................................................TAGCCTCTACTAGGCTTAGT.................................................................................................	20	2	1.50	1.50
.....................................................................TAGCCTCTAATAGGCTTTGTCT...............................................................................................	22	2	1.50	1.50
...................................................................................................................ACATAGCCCATGAGAGGTTAG..................................................	21	2	1.50	1.50
...................................................................................................................ACATAGCCTATGAGAGGGTAG..................................................	21	2	1.50	1.50
.....................................................................TAGCCTCTACTAGGCTTTTTCT...............................................................................................	22	2	1.50	1.50
.....................................................................TAGCGTCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	1.50
...................................................................................................................ACATAGCCTATGAGAGGAT....................................................	19	2	1.50	1.50
.....................................................................TAGCCTCTACTAGGCTTGGT.................................................................................................	20	2	1.50	1.50
.....................................................................TAGCCTCTACTAGCCTTTGTCT...............................................................................................	22	2	1.50	1.50
.....................................................................TAGCCTATACTAGGCTTTGTC................................................................................................	21	2	1.50	1.50
.....................................................................TAGCCTCTACTAGGCTTTGTCC...............................................................................................	22	2	1.50	1.50
.....................................................................TAGCATCTACTAGGCTTTGTCT...............................................................................................	22	2	1.50	1.50
.....................................................................TAGCCTCTACTAGGCxTTGTCT...............................................................................................	21	2	1.50	1.50
.....................................................................TAGCCTCTACTACGCTTTGTCT...............................................................................................	22	2	1.50	1.50
.....................................................................TAGCCTCTAATAGGCTTTGT.................................................................................................	20	2	1.50	1.50

Generated: 04/20/2012 at 05:27:33 EDT

dme-mir-282

chr3L:3251022-3251118 +

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup