dme-mir-281-2- Best orthologs

dme-mir-281-2	chr2R:8057658-8057749 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 8057713-8057735
   star strand at position 8057669-8057691
   mutations
   read mismatches

Notes: droSim1 ortholog lies in an unassembled region of the genome with about 1Kb of N's. chr2R_random:2147053-2148065

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2R:8057643-8057764 -		1	CTTTCA---G----ATCCTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AG--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT
droSim1	chr2R_random:2148106-2148211 -	LASTZ	1	AATCGA---A----TCCAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA-------AA--GCATTTAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGA----------------
droSec1	super_1:5602746-5602867 -	LASTZ	1	CTTTCA---G----ATCCTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AG--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT
droYak2	chr2R:8893539-8893660 +	LASTZ	1	CTTTCA---G----ATCCCCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AT--ACCAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAGGCGACGAT--TAG
droEre2	scaffold_4845:17736400-17736520 +	LASTZ	1	CTTTCA---G----ATCCTCCACGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AT--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TA-
droEug1	scf7180000409462:405955-406077 +	LASTZ	4	GTTCCA---G----ATCCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----GAAT--ACTGATTATAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droBia1	scf7180000302292:873797-873917 -	LASTZ	4	CTC-CT---G----ATCCTCAGCGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droTak1	scf7180000415260:184315-184436 +	LASTZ	4	GCTCCT---G----ATCCACCGCGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droEle1	scf7180000491214:3592750-3592874 -	LASTZ	4	ATCCCAAAGG----ACTTCCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TTC
droRho1	scf7180000779932:497242-497365 -	LASTZ	4	TCCGAA-AGG----ACTCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATCGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--ATC
droFic1	scf7180000453809:453495-453612 -	LASTZ	4	AG-------G----ACTCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATAGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droKik1	scf7180000302367:392665-392778 +	LASTZ	4	T----------------CTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--GCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAC--AAT
droAna3	scaffold_13266:2568922-2569043 +	LASTZ	1	CCGCAA--GG----ATACTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AAACACGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT-----
droBip1	scf7180000396759:1630201-1630321 +	LASTZ	4	GCCCCA-AGG----ATACTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT-----
dp4	chr3:418209-418322 -	LASTZ	1	TAT------A----ATACTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT----A-A---TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------
droPer1	super_2:605106-605226 -	LASTZ	1	TTTTCT---GTATAATACTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT----A-A---TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------
droWil1	scaffold_181141:3242068-3242181 +	LASTZ	1	TC--------------------CGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCCAGTTTAATACAT--CCGAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGGT--TTT
droVir3	scaffold_12875:19830099-19830219 +	LASTZ	1	CTAACC---A----AAC--TTGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGCT----A--T--ACAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGACTTTAT
droMoj3	scaffold_6496:6376053-6376173 -	LASTZ	1	CCCTCA---G----T---TCTGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----ATAT--ACATATTTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGAT-ATAT
droGri2	scaffold_15245:18178374-18178494 +	LASTZ	1	GTTTCA---C---AACAAATTACGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----ATAT--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGAT-----

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CTTTCA---G----ATCCTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AG--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT
droSim1	AATCGA---A----TCCAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA-------AA--GCATTTAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGA----------------
droSec1	CTTTCA---G----ATCCTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AG--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT
droYak2	CTTTCA---G----ATCCCCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AT--ACCAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAGGCGACGAT--TAG
droEre2	CTTTCA---G----ATCCTCCACGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AT--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TA-
droEug1	GTTCCA---G----ATCCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----GAAT--ACTGATTATAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droBia1	CTC-CT---G----ATCCTCAGCGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droTak1	GCTCCT---G----ATCCACCGCGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droEle1	ATCCCAAAGG----ACTTCCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TTC
droRho1	TCCGAA-AGG----ACTCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATCGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--ATC
droFic1	AG-------G----ACTCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATAGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droKik1	T----------------CTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--GCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAC--AAT
droAna3	CCGCAA--GG----ATACTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AAACACGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT-----
droBip1	GCCCCA-AGG----ATACTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT-----
dp4	TAT------A----ATACTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT----A-A---TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------
droPer1	TTTTCT---GTATAATACTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT----A-A---TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------
droWil1	TC--------------------CGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCCAGTTTAATACAT--CCGAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGGT--TTT
droVir3	CTAACC---A----AAC--TTGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGCT----A--T--ACAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGACTTTAT
droMoj3	CCCTCA---G----T---TCTGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----ATAT--ACATATTTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGAT-ATAT
droGri2	GTTTCA---C---AACAAATTACGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----ATAT--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGAT-----

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

AATCGA---A----TCCAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA-------AA--GCATTTAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGA----------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	2	146837.00	116.50	27695.00	108315.00	10710.50
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	2	139187.50	549.00	25205.00	96585.00	16848.50
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	2	49327.50	19.00	9123.50	38262.00	1923.00
....................................AAGAGAGCTATCCGTCGACAGG................................................................................	22	2	17826.00	1.00	2579.50	13567.50	1678.00
....................................AAGAGAGCTATCCGTCGACAGC................................................................................	22	2	11163.50	0.50	2653.50	7642.00	867.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	2	5520.50	530.00	719.50	3049.50	1221.50
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	2	4826.00	18.50	719.50	3822.00	266.00
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	2	4793.00	2.00	888.50	3834.50	68.00
...................................AAAGAGAGCTGTCCGTCGAC...................................................................................	20	2	3289.00	0.00	920.50	2296.00	72.50
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	2	2733.00	0.50	624.00	2074.00	34.50
...................................AAAGAGAGCTGTCCGTCGACAG.................................................................................	22	2	2357.00	134.00	444.50	1567.50	211.00
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	2	1813.50	213.50	249.50	1140.50	210.00
...................................AAAGAGAGCTGTCCGTCGACA..................................................................................	21	2	1468.00	2.00	327.00	1090.50	48.50
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	2	1428.00	31.50	237.50	1062.50	96.50
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	2	1148.50	12.50	200.00	726.50	209.50
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	2	1021.50	3.50	130.00	767.50	120.50
........................................GAGCTATCCGTCGACAGTC...............................................................................	19	2	917.00	0.00	147.50	595.50	174.00
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	2	756.50	199.50	81.00	322.50	153.50
....................................AAGAGAGCTATCCGTCGACAC.................................................................................	21	2	688.00	0.00	184.50	477.50	26.00
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	2	592.00	2.50	128.50	413.00	48.00
.....................................AGAGAGCTATCCGTCGACAGTC...............................................................................	22	2	584.00	2.00	187.50	343.00	51.50
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	2	579.00	4.00	91.00	459.50	24.50
....................................AAGAGAGCTATCCGTCGACAGAC...............................................................................	23	2	547.50	0.00	117.50	364.00	66.00
...................................AAAGAGAGCTGTCCGTCGACAGT................................................................................	23	2	521.50	293.50	37.50	139.00	51.50
........................................GAGCTATCCGTCGACAGT................................................................................	18	2	520.50	0.00	88.50	373.50	58.50
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	2	429.00	0.50	117.00	288.50	23.00
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	2	393.50	0.00	92.00	236.50	65.00
.....................................AGAGAGCTATCCGTCGACAGT................................................................................	21	2	392.50	0.00	141.50	236.50	14.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTGA...........................	24	2	354.50	11.50	96.00	214.00	33.00
....................................AAGAGGGCTATCCGTCGACAGT................................................................................	22	2	302.00	0.00	50.00	226.50	25.50
....................................AAGAGGGCTATCCGTCGACAGTC...............................................................................	23	2	299.00	1.00	41.50	213.50	43.00
....................................AAGAGAGCTATCCGTCGACGG.................................................................................	21	2	294.50	0.00	34.50	248.00	12.00
....................................AAGAGAGCTATCCGTCGACAGCC...............................................................................	23	2	269.50	1.50	40.00	193.50	34.50
....................................AAGGGAGCTATCCGTCGACAGT................................................................................	22	2	255.00	0.00	44.50	191.50	19.00
....................................AAGGGAGCTATCCGTCGACAGTC...............................................................................	23	2	235.00	0.00	34.50	177.50	23.00
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	2	224.00	7.00	37.00	139.00	41.00
....................................AAGAGAGCTATCCGTCGACG..................................................................................	20	2	196.00	0.00	24.00	168.00	4.00
....................................AGGAGAGCTATCCGTCGACAGTC...............................................................................	23	2	191.00	0.00	33.00	131.50	26.50
....................................AATAGAGCTATCCGTCGACAGTC...............................................................................	23	2	187.00	0.00	34.50	112.50	40.00
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	2	182.00	10.50	26.00	144.00	1.50
....................................AGGAGAGCTATCCGTCGACAGT................................................................................	22	2	181.50	0.00	33.00	134.00	14.50
....................................AAGAGAGCTACCCGTCGACAGTC...............................................................................	23	2	164.00	0.00	26.00	114.00	24.00
....................................AAGAGAGCTATCCGTCGACT..................................................................................	20	2	160.00	0.00	37.50	121.00	1.50
....................................AAGAGATCTATCCGTCGACAGTC...............................................................................	23	2	150.50	0.00	22.50	102.50	25.50
....................................AAGAGAGCTACCCGTCGACAGT................................................................................	22	2	146.00	0.00	23.00	109.50	13.50
....................................AAGAGAGCTATCCGTCGACAGTCG..............................................................................	24	2	131.50	0.50	21.50	84.50	25.00
....................................AATAGAGCTATCCGTCGACAGT................................................................................	22	2	129.50	0.00	26.00	79.50	24.00
........................................................................................TGTCATGGAATTGCTCTCT...............................	19	2	124.00	0.00	32.00	76.00	16.00
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	2	121.50	0.00	26.50	83.00	12.00
....................................AAGAGATCTATCCGTCGACAGT................................................................................	22	2	120.50	0.00	33.50	76.00	11.00
....................................AAGAGAGCCATCCGTCGACAGT................................................................................	22	2	118.50	0.00	18.00	92.50	8.00
....................................AAGAGAGCTATCCGCCGACAGTC...............................................................................	23	2	116.50	2.50	15.00	87.00	12.00
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	2	110.50	27.00	26.50	51.00	6.00
....................................AAGAGAGCCATCCGTCGACAGTC...............................................................................	23	2	109.00	1.50	17.00	74.50	16.00
...................................AAAGAGAGCTGTCCGTCGACT..................................................................................	21	2	106.00	0.00	25.00	80.00	1.00
....................................AAGAGAGCTATCCGCCGACAGT................................................................................	22	2	104.00	0.00	20.00	74.00	10.00
...................................GAAGAGAGCTATCCGTCGACAGT................................................................................	23	2	97.00	0.00	7.50	57.00	32.50
....................................AAGGGAGCTATCCGTCGACAG.................................................................................	21	2	92.00	0.00	15.00	73.50	3.50
....................................AAGAGAGCTATCCGTCGACAGTCAA.............................................................................	25	2	89.00	1.00	4.50	19.50	64.00
....................................AAGAGAGCTGTCCGTCGACAGT................................................................................	22	2	88.00	3.00	12.00	66.50	6.50
....................................AAGAGAGCTATCCGTCGGCAGTC...............................................................................	23	2	88.00	2.50	15.00	58.50	12.00
....................................AAGAGAGCTATCCGTCGGCAGT................................................................................	22	2	87.50	1.00	12.00	64.50	10.00
....................................AAGAGGGCTATCCGTCGACAG.................................................................................	21	2	87.50	0.00	15.00	69.50	3.00
....................................AAGATAGCTATCCGTCGACAGTC...............................................................................	23	2	83.00	0.00	16.00	54.00	13.00
....................................AAGAGACCTATCCGTCGACAGTC...............................................................................	23	2	81.50	0.50	12.50	46.00	22.50
....................................AACAGAGCTATCCGTCGACAGTC...............................................................................	23	2	79.50	0.00	23.50	40.50	15.50
....................................AAGAGAGCTATCCGTCGACAGGC...............................................................................	23	2	79.50	3.00	12.00	58.50	6.00
........................................................................................TGTCATGGAATTGCTCTCTTTGG...........................	23	2	77.50	0.00	9.00	43.50	25.00
....................................AAGAGAGCTGTCCGTCGACAGTC...............................................................................	23	2	75.00	7.50	12.00	44.50	11.00
....................................AAGAGAGCTATCCGGCGACAGT................................................................................	22	2	74.50	0.50	13.00	59.00	2.00
....................................AAGAGAGCTATCCGGCGACAGTC...............................................................................	23	2	71.00	1.50	8.50	59.50	1.50
....................................GAGAGAGCTATCCGTCGACAGTC...............................................................................	23	2	70.50	0.00	9.00	53.00	8.50
....................................AAGAGAGCTATCCGTCGACAA.................................................................................	21	2	69.50	0.00	14.50	49.50	5.50
....................................AAGAGAGCTATCCGTCAACAGTC...............................................................................	23	2	68.00	0.50	10.00	52.00	5.50
....................................AACAGAGCTATCCGTCGACAGT................................................................................	22	2	67.50	0.00	13.00	42.00	12.50
....................................AGGAGAGCTATCCGTCGACAG.................................................................................	21	2	67.00	0.00	8.50	56.00	2.50
........................................GAGCTATCCGTCGACAGG................................................................................	18	2	66.00	0.00	9.50	51.50	5.00
....................................AAGAGAGCTATCTGTCGACAGTC...............................................................................	23	2	62.50	2.50	8.50	45.00	6.50
....................................AAGAGACCTATCCGTCGACAGT................................................................................	22	2	61.00	0.00	12.00	43.00	6.00
....................................AAGAGAGCTATCCATCGACAGT................................................................................	22	2	60.50	0.00	12.50	43.00	5.00
....................................AAGAGAGCTATCTGTCGACAGT................................................................................	22	2	60.50	0.00	10.50	49.00	1.00
.....................................AGAGAGCTATCCGTCGACAG.................................................................................	20	2	60.50	0.00	19.50	40.50	0.50
....................................AAGAGAGCTATCAGTCGACAGT................................................................................	22	2	59.50	0.50	7.00	50.50	1.50
....................................AAGAGAGCTGTCCGTCGACAG.................................................................................	21	2	59.50	0.00	16.00	42.50	1.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTGG...........................	24	2	59.50	0.00	11.50	40.00	8.00
....................................AAGAGAGCTATCCATCGACAGTC...............................................................................	23	2	57.50	2.00	10.00	34.50	11.00
...................................AAAGAGAGCTGTCCGTCGACG..................................................................................	21	2	57.50	0.00	12.00	44.50	1.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	2	55.00	4.00	8.50	40.00	2.50
....................................GAGAGAGCTATCCGTCGACAGT................................................................................	22	2	55.00	0.00	9.00	40.50	5.50
.......................................AGAGCTATCCGTCGACAGTC...............................................................................	20	2	54.50	0.00	8.50	31.50	14.50
.....................................AGAGAGCTATCCGTCGACAGG................................................................................	21	2	54.00	0.00	24.00	28.50	1.50
....................................AAGAGAGCTATACGTCGACAGT................................................................................	22	2	52.50	0.00	3.00	49.50	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTGTA..........................	24	2	52.50	3.00	7.00	21.00	21.50
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	2	52.00	1.00	11.00	26.00	14.00
....................................AAGAGAGCTATCCGTCAACAGT................................................................................	22	2	50.00	1.00	8.50	37.00	3.50
....................................AAGAGAGCTATCAGTCGACAGTC...............................................................................	23	2	49.50	2.00	6.00	37.50	4.00
..................................TGAAGAGAGCTATCCGTCGACA..................................................................................	22	2	48.50	0.50	10.00	34.00	4.00
......................................AAGAGCTATCCGTCGACAGTC...............................................................................	21	2	48.50	0.00	14.00	24.50	10.00
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	2	47.50	0.00	8.00	34.00	5.50
....................................AAGAGAGCTATTCGTCGACAGTC...............................................................................	23	2	47.00	2.00	8.50	33.00	3.50
....................................AAGAGAGCTATCCGTCTACAGTC...............................................................................	23	2	46.50	0.00	6.00	33.00	7.50

droSec1

CTTTCA---G----ATCCTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AG--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	11598.50	9870.00	984.25	744.25
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	4	11181.00	10384.25	302.00	494.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	4	7490.25	5393.00	1510.50	586.75
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	4	6086.50	4814.25	814.75	457.50
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	4	5854.50	4587.75	888.00	378.75
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	4	1993.50	1830.50	30.75	132.25
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	4	1524.75	1381.25	36.75	106.75
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	4	1421.00	1362.00	6.00	53.00
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	4	1168.75	1067.25	16.75	84.75
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	4	1076.25	954.25	35.00	87.00
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	4	1064.50	951.25	70.50	42.75
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	4	1052.75	954.50	7.25	91.00
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	4	623.50	407.75	41.50	174.25
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	4	395.50	355.25	18.75	21.50
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	4	240.50	222.50	4.50	13.50
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	4	225.25	219.00	0.50	5.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTGT...........................	24	4	201.75	176.75	10.25	14.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTGA...........................	24	4	160.00	79.00	16.25	64.75
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	4	145.00	118.25	19.50	7.25
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	2	279.00	234.00	27.50	17.50
.........................................................................................GTCATGGAATTGCTCTCTTTGT...........................	22	4	134.50	114.75	10.00	9.75
........................................................................................TGTCATGGAATTGCTCTCTTTT............................	22	4	121.00	109.25	2.25	9.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	4	117.75	101.50	5.00	11.25
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	4	105.00	97.00	1.25	6.75
....................................AAGAGAGCTGTCCGTCGACAGT................................................................................	22	4	90.50	62.00	17.00	11.50
....................................AAGAGAGCTATCCGTCGAAAGT................................................................................	22	4	90.50	89.25	0.00	1.25
....................................AAGAGAGCTATCCGTCGAAAGTC...............................................................................	23	4	86.25	84.25	0.25	1.75
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	4	75.50	67.50	1.00	7.00
....................................AAGAGAGCTATCCGTCGATAGTC...............................................................................	23	4	72.00	55.50	16.00	0.50
....................................AAGAGAGCTGTCCGTCGACAGTC...............................................................................	23	4	66.00	47.25	11.50	7.25
....................................AAGAGAGCTATCCGTCGATAGT................................................................................	22	4	63.75	59.50	4.00	0.25
........................................................................................TGTCATGGAATTGCTCTCTTTGTA..........................	24	4	58.00	37.50	16.50	4.00
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	4	54.00	50.00	1.25	2.75
.....................................AGAGAGCTGTCCGTCGACAGT................................................................................	21	4	52.25	40.00	6.75	5.50
.....................................AGAGAGCTGTCCGTCGACAGTC...............................................................................	22	4	51.50	27.50	13.50	10.50
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	4	49.00	42.75	1.00	5.25
........................................................................................TGTCATGGAATTGCTCTCCTTGT...........................	23	4	44.00	41.50	2.00	0.50
....................................AAGAGAGCTATCCGTCGACAGTTT..............................................................................	24	2	87.50	83.00	0.00	4.50
....................................AAGAGAGCTATCCGTCGAGAGT................................................................................	22	4	43.50	43.50	0.00	0.00
........................................................................................TGTCATGGAATTGCTCTCCTTG............................	22	4	41.75	38.50	2.00	1.25
.......................................................................................CTGTCATGGAATTGCTCTATTTG............................	23	4	40.75	40.00	0.25	0.50
....................................AAGAGAGCTATCCGTCGAGAGTC...............................................................................	23	4	40.75	40.75	0.00	0.00
........................................................................................TGTCATGGAATTGCTCTCATTG............................	22	4	36.75	36.00	0.25	0.50
....................................AAGAGAGCTATCCGTCGACAGC................................................................................	22	4	36.50	33.75	1.50	1.25
.....................................AGAGAGCTATCCGTCGACAGTC...............................................................................	22	4	35.00	26.25	4.75	4.00
....................................AAGAGAGCTATCCGTCGACT..................................................................................	20	4	31.75	29.25	0.00	2.50
.......................................................................................CTGTCATGGAATTGCTCTTTTTG............................	23	4	30.25	24.75	5.25	0.25
........................................................................................TGTCATGGAATTGCTCTCATTGT...........................	23	4	29.75	29.25	0.00	0.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTGC...........................	24	4	25.75	22.50	2.00	1.25
....................................AAGAGAGCTATCCGTCGACAGCC...............................................................................	23	4	25.50	21.50	2.75	1.25
....................................AAGAGAGCTGTCCGTCGACAG.................................................................................	21	4	23.25	15.00	5.00	3.25
....................................AAGAGAGCTATCCGTCTACAGTC...............................................................................	23	4	22.50	20.00	1.25	1.25
....................................AAGAGAGCTATCCGTCGACAGTCCA.............................................................................	25	4	21.50	20.00	0.25	1.25
....................................................................................ATACTGTCATGGAATTGCTCTCT...............................	23	2	39.00	36.50	1.00	1.50
........................................................................................TGTCATGGAATTGCTCTCGTTG............................	22	4	18.25	18.25	0.00	0.00
.........................................................................................GTCATGGAATTGCTCTCTTTG............................	21	4	17.75	16.00	1.00	0.75
........................................................................................TGTCATGGAATTGCTCTCGTTGT...........................	23	4	16.75	16.75	0.00	0.00
....................................AAGAGAGCTACCCGTCGACAGTC...............................................................................	23	4	16.25	12.50	2.25	1.50
....................................AAGAGAGCTATCCGTCGACAGTCCT.............................................................................	25	4	16.00	14.25	0.50	1.25
....................................AAGAGAGCTATCCGTCTACAGT................................................................................	22	4	15.75	14.50	0.00	1.25
.......................................................................................CTGTCATGGAATTGCTCTGTTTG............................	23	4	15.50	15.50	0.00	0.00
....................................AAGAGAGCTATCCGTCGAAAG.................................................................................	21	4	14.50	14.25	0.00	0.25
.....................................AGAGAGCTATCCGTCGACAGT................................................................................	21	4	14.25	12.50	0.25	1.50
....................................AAGGGAGCTATCCGTCGACAGT................................................................................	22	4	14.00	13.25	0.50	0.25
.......................................................................................CTGCCATGGAATTGCTCTCTTTG............................	23	4	13.75	11.50	2.00	0.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTA............................	23	4	13.25	11.50	0.75	1.00
....................................AAGAGAGCTATCCGTCGATAG.................................................................................	21	4	13.25	13.25	0.00	0.00
....................................AAGAGAGCCATCCGTCGACAGT................................................................................	22	4	13.00	12.50	0.25	0.25
....................................AAGAGAGCTATCCGCCGACAGT................................................................................	22	4	13.00	12.25	0.25	0.50
........................................................................................TGTCATGGAATTGCTCTCCTT.............................	21	4	12.75	12.75	0.00	0.00
....................................AAGAGGGCTATCCGTCGACAGTC...............................................................................	23	4	12.50	9.25	2.25	1.00
....................................AAGAGAGCTATCCGTCGACCGT................................................................................	22	4	12.50	11.50	0.75	0.25
.......................................................................................CTGTCATGGGATTGCTCTCTTTG............................	23	4	12.25	7.75	4.50	0.00
....................................AAGAGAGCTATCCGTCCACAGTC...............................................................................	23	4	12.00	11.00	1.00	0.00
....................................AAGAGAGCTATCCGTCGAAA..................................................................................	20	4	12.00	12.00	0.00	0.00
.......................................................................................CTGTCATGGAATTGCTCTCCTTG............................	23	4	11.75	7.75	3.75	0.25
....................................AAGAGAGCTATCCGTTGACAGTC...............................................................................	23	4	11.75	8.25	3.00	0.50
....................................AAGAGAGCTATCTGTCGACAGTC...............................................................................	23	4	11.75	6.25	4.75	0.75
....................................AAGGGAGCTATCCGTCGACAGTC...............................................................................	23	4	11.75	8.75	2.50	0.50
......................................AAGAGCTATCCGTCGACAGTC...............................................................................	21	4	11.50	8.50	2.25	0.75
....................................AAGAGAGCTACCCGTCGACAGT................................................................................	22	4	11.25	11.25	0.00	0.00
....................................AAGAGAGCTATCCGCCGACAGTC...............................................................................	23	4	11.00	9.50	1.25	0.25
........................................................................................TGTCATGGAATTGCTCTCTTTA............................	22	4	11.00	10.25	0.00	0.75
........................................................................................TGTCATGGAATTGCTCTCATT.............................	21	4	10.75	10.50	0.00	0.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTC............................	23	4	10.50	9.50	0.75	0.25
........................................................................................TGTCATGGAATTGCTCTCCTTGC...........................	23	4	10.50	9.75	0.50	0.25
...................................GAAGAGAGCTATCCGTCGACAGT................................................................................	23	2	20.50	16.50	3.50	0.50
....................................ACGAGAGCTATCCGTCGACAGT................................................................................	22	4	10.25	9.75	0.50	0.00
.......................................................................................CTGTCATGGAGTTGCTCTCTTTG............................	23	4	10.25	5.50	4.00	0.75
..........................................................................................TCATGGAATTGCTCTCTTTGTA..........................	22	4	10.25	8.25	1.75	0.25
....................................AAGAGGGCTATCCGTCGACAGT................................................................................	22	4	10.25	9.50	0.50	0.25
........................................................................................TGTCATGGGATTGCTCTCTTTG............................	22	4	10.25	7.25	2.25	0.75
....................................AAGAGAGCTATCCGTCGACACTC...............................................................................	23	4	10.25	9.50	0.50	0.25
....................................AAGAGAGCTATCCGTCGAAAGTCT..............................................................................	24	2	20.50	19.50	0.00	1.00
.......................................................................................CTGTCATGGAATTGCTCCCTTTG............................	23	4	10.00	7.75	2.00	0.25
....................................AAGAGAGCTATCCCTCGACAGTC...............................................................................	23	4	10.00	8.00	1.25	0.75
....................................AGGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	9.75	8.25	0.50	1.00
....................................AAGAGAGCTATCTGTCGACAGT................................................................................	22	4	9.75	7.00	2.00	0.75
....................................AATAGAGCTATCCGTCGACAGT................................................................................	22	4	9.75	7.75	0.25	1.75
....................................AAGATAGCTATCCGTCGACAGTC...............................................................................	23	4	9.75	8.25	0.75	0.75
....................................AAGAGAGCTATCCCTCGACAGT................................................................................	22	4	9.25	8.75	0.50	0.00

droYak2

CTTTCA---G----ATCCCCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AT--ACCAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAGGCGACGAT--TAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	10438.00	159.50	97.50	3680.50	203.25	6297.25
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	4	6681.50	31.25	37.25	2113.25	76.50	4423.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	4	2935.75	178.50	57.75	2384.50	135.75	179.25
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	4	2568.50	4.50	12.25	548.00	29.00	1974.75
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	4	1987.75	35.00	42.75	1789.00	91.25	29.75
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	4	1516.00	87.50	43.50	1273.25	92.25	19.50
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	4	1189.25	5.75	6.25	976.75	19.50	181.00
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	4	514.50	1.00	12.00	479.75	19.75	2.00
....................................AAGAGAGCTATCCGTCGACAGC................................................................................	22	4	513.50	0.00	0.00	11.25	0.75	501.50
....................................AAGAGAGCTATCCGTCGACAGG................................................................................	22	4	494.00	0.00	0.00	0.50	0.75	492.75
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	4	464.00	1.00	6.50	305.00	10.50	141.00
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	4	415.50	1.25	1.25	202.50	5.75	204.75
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	4	341.00	2.25	6.50	306.75	17.25	8.25
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	4	289.50	2.50	6.50	257.75	13.00	9.75
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	4	167.00	0.75	3.25	139.50	6.25	17.25
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	4	122.75	0.50	1.00	57.75	3.50	60.00
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	2	188.00	3.00	2.00	107.00	1.50	74.50
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	4	84.00	0.00	0.50	17.75	1.25	64.50
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	4	76.75	2.25	1.00	66.00	2.50	5.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTGT...........................	24	4	63.75	1.75	1.50	50.75	4.25	5.50
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	4	57.25	0.00	1.25	43.25	1.75	11.00
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	4	56.25	0.00	1.00	50.00	3.25	2.00
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	4	56.00	2.00	1.00	49.50	2.50	1.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	4	50.00	2.75	6.75	34.75	5.25	0.50
........................................................................................TGTCATGGAATTGCTCTCTTTT............................	22	4	45.25	0.00	3.25	39.50	2.50	0.00
....................................AAGAGAGCTATCCGTCGACAC.................................................................................	21	4	44.75	0.00	0.00	1.50	0.50	42.75
....................................AAGAGAGCTATCCGTCGACAGAC...............................................................................	23	4	38.50	0.00	0.00	0.75	0.25	37.50
.....................................AGAGAGCTATCCGTCGACAGTC...............................................................................	22	4	35.25	0.50	0.00	9.50	1.00	24.25
.........................................................................................GTCATGGAATTGCTCTCTTTGT...........................	22	4	31.75	1.25	0.50	28.50	1.50	0.00
........................................GAGCTATCCGTCGACAGTC...............................................................................	19	4	30.50	0.00	0.00	0.75	0.00	29.75
....................................AAGAGAGCTATCCGTCGACAGCC...............................................................................	23	4	27.25	0.50	0.25	16.75	3.50	6.25
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	4	25.25	0.75	0.75	10.50	0.75	12.50
....................................AAGAGAGCTGTCCGTCGACAGTC...............................................................................	23	4	21.75	1.75	0.25	14.75	2.50	2.50
....................................AAGAGGGCTATCCGTCGACAGTC...............................................................................	23	4	18.00	0.00	0.25	4.25	0.25	13.25
....................................AAGAGAGCTGTCCGTCGACAGT................................................................................	22	4	17.50	1.50	0.25	13.00	0.25	2.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTGA...........................	24	4	17.00	1.25	0.75	9.00	0.25	5.75
.....................................AGAGAGCTGTCCGTCGACAGTC...............................................................................	22	4	16.50	1.75	2.00	11.00	1.75	0.00
....................................AAGGGAGCTATCCGTCGACAGTC...............................................................................	23	4	15.25	0.75	0.00	3.75	0.25	10.50
....................................AAGAGAGCTATCCGTCGACCGTC...............................................................................	23	4	14.75	1.00	1.25	1.00	1.25	10.25
.....................................AGAGAGCTGTCCGTCGACAGT................................................................................	21	4	14.25	0.50	1.75	10.75	1.25	0.00
....................................AAGAGAGCTATCCGTCGACCGT................................................................................	22	4	14.25	0.00	0.75	2.50	1.75	9.25
....................................AAGAGAGCTATCCGTCGACATTC...............................................................................	23	4	12.75	0.25	0.25	8.00	0.75	3.50
........................................................................................TGTCATGGAATTGCTCTCTTTGTA..........................	24	4	12.75	0.75	0.25	11.50	0.00	0.25
........................................GAGCTATCCGTCGACAGT................................................................................	18	4	12.75	0.00	0.00	0.00	0.00	12.75
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	4	12.50	0.00	0.00	10.00	0.25	2.25
.....................................AGAGAGCTATCCGTCGACAGT................................................................................	21	4	12.25	0.00	0.00	2.25	0.00	10.00
....................................AAGAGGGCTATCCGTCGACAGT................................................................................	22	4	11.50	0.00	0.00	3.50	0.25	7.75
....................................AAGAGAGCTATCCGTCGCCAGTC...............................................................................	23	4	11.25	0.75	0.75	2.25	7.25	0.25
....................................AAGAGAGCTATCCGTCGACAGTTT..............................................................................	24	2	22.00	0.00	0.00	17.50	0.50	4.00
....................................AAGAGAGCTATCCGTCAACAGTC...............................................................................	23	4	11.00	0.25	0.25	4.50	0.25	5.75
....................................AGGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	10.50	0.25	0.00	2.75	0.00	7.50
....................................AAGAGAGCTACCCGTCGACAGTC...............................................................................	23	4	10.50	0.50	0.25	3.75	0.25	5.75
....................................AAGAGAGCTATCCGTCGACGG.................................................................................	21	4	10.50	0.00	0.00	0.25	0.00	10.25
....................................AAGAGAGCTATCCGTCCACAGTC...............................................................................	23	4	10.25	0.50	0.25	7.50	0.00	2.00
....................................AAGAGAGCTATCCGTCGACACTC...............................................................................	23	4	10.00	0.00	0.00	6.50	1.50	2.00
.......................................................................................CTGTCATGGACTTGCTCTCTTTG............................	23	4	9.75	0.75	0.75	5.75	2.50	0.00
....................................AATAGAGCTATCCGTCGACAGTC...............................................................................	23	4	9.75	0.00	0.25	3.00	0.00	6.50
....................................AAGAGAGCTATCCGTCTACAGTC...............................................................................	23	4	9.50	0.25	0.25	6.50	0.50	2.00
....................................AAGAGATCTATCCGTCGACAGTC...............................................................................	23	4	9.25	0.00	0.00	3.25	0.25	5.75
....................................AAGAGAGCTATCCGCCGACAGTC...............................................................................	23	4	8.25	0.25	0.00	3.75	1.25	3.00
....................................AAGGGAGCTATCCGTCGACAGT................................................................................	22	4	8.25	0.00	0.00	2.00	0.00	6.25
....................................AAGAGAGCTATCCGTCGACAGTCG..............................................................................	24	4	8.00	0.00	0.00	1.25	0.00	6.75
....................................AAGAGATCTATCCGTCGACAGT................................................................................	22	4	7.75	0.00	0.00	2.00	0.00	5.75
....................................AAGAGACCTATCCGTCGACAGTC...............................................................................	23	4	7.25	0.00	0.00	3.50	0.25	3.50
....................................AACAGAGCTATCCGTCGACAGTC...............................................................................	23	4	7.00	0.25	0.00	1.25	0.00	5.50
....................................AAGAGAGCTATCCGTCGACAGTCTT.............................................................................	25	2	14.00	0.00	0.00	7.50	0.00	6.50
....................................AAGAGAGCTATCCGTCGACT..................................................................................	20	4	7.00	0.00	0.00	3.00	0.50	3.50
....................................AAGAGAGCTATCCGTCGGCAGTC...............................................................................	23	4	7.00	1.00	0.50	1.50	1.75	2.25
......................................AAGAGCTATCCGTCGACAGTC...............................................................................	21	4	6.75	0.00	0.00	3.00	0.00	3.75
....................................AGGAGAGCTATCCGTCGACAGT................................................................................	22	4	6.50	0.00	0.00	1.00	0.00	5.50
...................................CAAGAGAGCTATCCGTCGACAGTC...............................................................................	24	4	6.50	0.50	0.00	3.75	0.25	2.00
........................................................................................TGTCATGGAATTGCTCTCT...............................	19	4	6.25	0.00	1.00	2.75	0.00	2.50
....................................AAGAGAGCTATCCATCGACAGTC...............................................................................	23	4	6.25	0.25	0.00	3.00	0.00	3.00
....................................AAGAGAGCTATCCGTCGACG..................................................................................	20	4	6.25	0.00	0.00	0.75	0.00	5.50
.......................................................................................CTGCCATGGAATTGCTCTCTTTG............................	23	4	6.25	0.25	0.00	5.50	0.50	0.00
....................................AAGAGAGCCATCCGTCGACAGTC...............................................................................	23	4	6.00	0.00	0.00	2.50	0.00	3.50
....................................AAGAGAGCTACCCGTCGACAGT................................................................................	22	4	6.00	0.00	0.00	2.25	0.00	3.75
....................................AAGAGAGCTATCCGTTGACAGTC...............................................................................	23	4	6.00	0.00	0.00	4.25	0.00	1.75
....................................AAGAGAGCTATACGTCGACAGTC...............................................................................	23	4	6.00	0.75	0.00	1.50	0.25	3.50
........................................................................................TGTCATGGAATTGCTCTCTTTGCT..........................	24	4	5.75	0.00	0.00	5.00	0.75	0.00
....................................AAGATAGCTATCCGTCGACAGTC...............................................................................	23	4	5.75	0.00	0.00	1.75	0.00	4.00
.......................................................................................CTGTCATGGAGTTGCTCTCTTTG............................	23	4	5.50	0.75	0.75	3.25	0.75	0.00
....................................AAGAGAGCTATCCGCCGACAGT................................................................................	22	4	5.50	0.00	0.00	3.00	0.25	2.25
....................................AAGAGAGCCATCCGTCGACAGT................................................................................	22	4	5.50	0.00	0.00	1.25	0.25	4.00
....................................AAGAGAGCTGTCCGTCGACAG.................................................................................	21	4	5.50	0.00	0.00	4.75	0.00	0.75
....................................AAGAGAGCTATCCGTCTACAGT................................................................................	22	4	5.25	0.00	0.00	3.75	0.25	1.25
....................................AAGAGAGCTATCCGTCGACCG.................................................................................	21	4	5.25	0.75	0.25	0.25	0.00	4.00
....................................AAGAGAGCTATCCGTCAACAGT................................................................................	22	4	5.25	0.00	0.00	2.25	0.25	2.75
....................................AAGAGAGCTATCCGTCGACAGCCT..............................................................................	24	2	10.50	0.00	0.00	9.00	0.50	1.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTA............................	23	4	5.25	0.25	0.00	3.75	1.25	0.00
.......................................................................................CTGGCATGGAATTGCTCTCTTTG............................	23	4	5.00	0.00	0.00	3.50	1.50	0.00
....................................AAGAGAGCTATCCGTCGAAAGTC...............................................................................	23	4	5.00	0.25	0.25	0.00	0.25	4.25
....................................AAGAGAGTTATCCGTCGACAGTC...............................................................................	23	4	5.00	0.50	0.00	1.25	0.25	3.00
........................................................................................TGTCATGGAATTGCTCTCTTTA............................	22	4	5.00	0.00	0.00	4.50	0.50	0.00
.........................................................................................GTCATGGAATTGCTCTCTTTG............................	21	4	5.00	0.00	0.25	4.25	0.50	0.00
....................................AAGAGAGCTATCCGTCGACAGTAA..............................................................................	24	2	9.50	0.00	0.00	1.50	0.00	8.00
....................................AAGAGGGCTATCCGTCGACAG.................................................................................	21	4	4.75	0.00	0.25	0.25	0.00	4.25
.......................................................................................CTGTCATGGCATTGCTCTCTTTG............................	23	4	4.50	0.25	0.00	1.50	2.25	0.50
.......................................................................................CTGTCATGGAATTGCTCTCCTTG............................	23	4	4.50	0.25	0.00	3.75	0.25	0.25
....................................AAGAGCGCTATCCGTCGACAGTC...............................................................................	23	4	4.50	0.00	0.00	1.50	1.25	1.75
....................................AAGAGAGCTATCCGTCGCCAGT................................................................................	22	4	4.50	0.25	0.00	1.00	2.75	0.50

droEre2

CTTTCA---G----ATCCTCCACGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AT--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TA-	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	1979.25	157.00	190.25	0.00	1632.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	4	1487.25	142.50	144.75	0.00	1200.00
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	4	945.00	66.50	163.00	0.00	715.50
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	4	762.75	46.00	74.50	0.00	642.25
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	4	481.00	68.50	76.50	0.00	336.00
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	4	334.00	8.50	33.75	0.00	291.75
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	4	231.50	5.50	6.75	0.00	219.25
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	4	141.00	3.75	20.50	0.00	116.75
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	4	105.50	0.25	14.25	0.00	91.00
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	4	90.00	2.75	9.50	0.00	77.75
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	4	76.00	0.25	3.50	0.00	72.25
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	4	68.00	3.25	1.50	0.00	63.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	4	44.00	14.75	7.75	0.00	21.50
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	4	43.25	2.50	11.75	0.00	29.00
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	4	35.25	1.50	3.25	0.00	30.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTGT...........................	24	4	31.50	1.50	3.75	0.00	26.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTGA...........................	24	4	28.00	2.75	0.50	0.00	24.75
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	4	26.50	0.50	0.50	0.00	25.50
........................................................................................TGTCATGGAATTGCTCTCTTTT............................	22	4	25.75	6.50	7.25	0.00	12.00
....................................AAGAGAGCTATCCGTCTACAGTC...............................................................................	23	4	18.50	1.00	1.00	0.00	16.50
.........................................................................................GTCATGGAATTGCTCTCTTTGT...........................	22	4	16.75	3.50	1.25	0.00	12.00
....................................AAGATAGCTATCCGTCGACAGTC...............................................................................	23	4	16.75	1.00	0.00	0.00	15.75
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	2	31.00	2.50	3.50	0.00	25.00
.......................................................................................CTGTCATTGAATTGCTCTCTTTG............................	23	4	15.00	1.25	0.00	0.00	13.75
....................................AATAGAGCTATCCGTCGACAGTC...............................................................................	23	4	14.25	0.25	0.00	0.00	14.00
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	4	13.75	0.00	3.25	0.00	10.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTC............................	23	4	12.75	0.00	0.25	0.00	12.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTA............................	23	4	12.25	0.00	0.00	0.00	12.25
....................................AAGAGAGCTATCCGTAGACAGTC...............................................................................	23	4	11.25	0.25	1.00	0.00	10.00
.......................................................................................CTGTCATGGAATTGCTATCTTTG............................	23	4	10.50	0.25	0.50	0.00	9.75
....................................AAGAGAGCTATCAGTCGACAGTC...............................................................................	23	4	10.50	0.25	0.25	0.00	10.00
.......................................................................................ATGTCATGGAATTGCTCTCTTTG............................	23	4	10.00	0.25	0.00	0.00	9.75
....................................AAGAGATCTATCCGTCGACAGTC...............................................................................	23	4	10.00	1.00	0.25	0.00	8.75
.......................................................................................CTGTAATGGAATTGCTCTCTTTG............................	23	4	9.75	0.25	0.00	0.00	9.50
........................................................................................TGTCATGGAATTTCTCTCTTTG............................	22	4	9.00	0.50	1.25	0.00	7.25
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	4	8.75	1.00	2.00	0.00	5.75
........................................................................................TGTCATTGAATTGCTCTCTTTG............................	22	4	8.75	0.50	0.25	0.00	8.00
........................................................................................TGTCATGGAATTGCTCTCTTTGTA..........................	24	4	8.50	2.00	1.50	0.00	5.00
.......................................................................................CTGTCATGTAATTGCTCTCTTTG............................	23	4	8.25	2.50	0.50	0.00	5.25
....................................AAGATAGCTATCCGTCGACAGT................................................................................	22	4	8.25	0.50	0.00	0.00	7.75
.......................................................................................CTGTCATGGAATTGCTCTATTTG............................	23	4	8.00	0.25	0.00	0.00	7.75
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	4	7.75	0.25	1.25	0.00	6.25
........................................................................................TGTCATGGAATTGCTCTCTTTTT...........................	23	4	7.50	4.25	2.75	0.00	0.50
....................................AAGAGAGCTATCCGTCGCCAGTC...............................................................................	23	4	7.50	1.00	4.25	0.00	2.25
....................................AAGAGAGCTATCCGTCGACATTC...............................................................................	23	4	7.25	0.50	0.25	0.00	6.50
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	4	7.25	0.25	1.00	0.00	6.00
....................................AAGAGAGCTATCCGTCGACAGTG...............................................................................	23	4	7.25	0.00	0.25	0.00	7.00
....................................AAGAGAGATATCCGTCGACAGTC...............................................................................	23	4	7.00	0.00	0.25	0.00	6.75
.......................................................................................CTGTCATGGAATTTCTCTCTTTG............................	23	4	6.75	1.25	0.50	0.00	5.00
........................................................................................TGTAATGGAATTGCTCTCTTTG............................	22	4	6.75	0.00	0.25	0.00	6.50
....................................AAGAGAGCTATCCGTCGACAGCC...............................................................................	23	4	6.50	1.50	0.75	0.00	4.25
........................................................................................TGTCATGGAATTGCTATCTTTG............................	22	4	6.25	0.50	0.00	0.00	5.75
.....................................AGAGAGCTGTCCGTCGACAGT................................................................................	21	4	6.25	0.50	0.00	0.00	5.75
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	4	6.25	0.50	1.00	0.00	4.75
....................................AAGAGAGCTATCCTTCGACAGTC...............................................................................	23	4	6.00	0.25	0.25	0.00	5.50
....................................AAGAGAGCTATCCGTCGAAAGTC...............................................................................	23	4	5.75	0.25	0.75	0.00	4.75
....................................AAGAGAGCTATCCGTCTACAGT................................................................................	22	4	5.75	0.00	0.25	0.00	5.50
........................................................................................TGTCATGGAATTGCTCTATTTG............................	22	4	5.50	0.00	0.00	0.00	5.50
....................................AAGAGAGCTATACGTCGACAGTC...............................................................................	23	4	5.50	0.00	0.00	0.00	5.50
........................................................................................TGTCATGTAATTGCTCTCTTTG............................	22	4	5.25	0.25	0.00	0.00	5.00
....................................AATAGAGCTATCCGTCGACAGT................................................................................	22	4	5.25	0.25	0.00	0.00	5.00
.....................................AGAGAGCTATCCGTCGACAGTC...............................................................................	22	4	5.00	0.25	0.50	0.00	4.25
....................................AAGAGAGCTGTCCGTCGACAGTC...............................................................................	23	4	5.00	0.75	0.50	0.00	3.75
.......................................................................................CTTTCATGGAATTGCTCTCTTTG............................	23	4	5.00	0.75	0.00	0.00	4.25
....................................AAGAGAGCTATCCGTCGACAGTTT..............................................................................	24	2	10.00	0.00	0.00	0.00	10.00
....................................AAGAGAGCTGTCCGTCGACAGT................................................................................	22	4	5.00	0.25	0.50	0.00	4.25
.....................................AGAGAGCTGTCCGTCGACAGTC...............................................................................	22	4	4.75	0.00	0.75	0.00	4.00
....................................AAGAGAGCTATCAGTCGACAGT................................................................................	22	4	4.50	0.00	0.00	0.00	4.50
....................................AAGAGGGCTATCCGTCGACAGTC...............................................................................	23	4	4.50	0.25	0.50	0.00	3.75
....................................AAGGGAGCTATCCGTCGACAGTC...............................................................................	23	4	4.50	0.50	0.25	0.00	3.75
.......................................................................................CTGTCATGGAATTGATCTCTTTG............................	23	4	4.50	0.00	0.50	0.00	4.00
....................................AAGAGAGCTATCCGTCGACAGC................................................................................	22	4	4.25	0.00	1.50	0.00	2.75
....................................AAGAGAGCTATCCGTCGACCGTC...............................................................................	23	4	4.00	1.00	2.00	0.00	1.00
....................................AAAAGAGCTATCCGTCGACAGTC...............................................................................	23	4	3.75	0.50	0.00	0.00	3.25
....................................AAGAGAGCTATCTGTCGACAGTC...............................................................................	23	4	3.75	0.00	0.75	0.00	3.00
........................................................................................TGTCATTGAATTGCTCTCTTTGT...........................	23	4	3.50	0.75	0.00	0.00	2.75
....................................AAGAGAGCTATCCGTCTACAG.................................................................................	21	4	3.50	0.00	0.00	0.00	3.50
....................................AAGATAGCTATCCGTCGACAG.................................................................................	21	4	3.25	0.00	0.00	0.00	3.25
....................................AAGAGAGCTATCCGTCGACAT.................................................................................	21	4	3.25	0.00	0.00	0.00	3.25
........................................................................................TGTAATGGAATTGCTCTCTTTGT...........................	23	4	3.25	0.00	0.00	0.00	3.25
....................................AAGAGAGCTATCCGCCGACAGTC...............................................................................	23	4	3.25	0.75	0.75	0.00	1.75
........................................................................................TGTCATGGAATTTCTCTCTTTGT...........................	23	4	3.25	1.00	0.25	0.00	2.00
....................................AAGAGAGCTATCCGTAGACAGT................................................................................	22	4	3.25	0.00	0.50	0.00	2.75
........................................................................................TGTCATGGAATTGATCTCTTTG............................	22	4	3.25	0.50	0.25	0.00	2.50
.......................................................................................CTGTCGTGGAATTGCTCTCTTTG............................	23	4	3.00	0.25	0.50	0.00	2.25
....................................AAGAGAGCTATCCTTCGACAGT................................................................................	22	4	3.00	0.50	0.00	0.00	2.50
........................................................................................TGTCATGGAATTGCTCTATTTGT...........................	23	4	3.00	0.00	0.25	0.00	2.75
....................................AAGAGAGATATCCGTCGACAGT................................................................................	22	4	3.00	0.25	0.00	0.00	2.75
....................................AAGAGATCTATCCGTCGACAGT................................................................................	22	4	3.00	0.25	0.00	0.00	2.75
....................................AATAGAGCTATCCGTCGACAGTCT..............................................................................	24	2	5.50	0.00	0.00	0.00	5.50
........................................................................................TGTCATGGAATTGCTATCTTTGT...........................	23	4	2.75	0.25	0.00	0.00	2.50
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	4	2.75	0.00	0.25	0.00	2.50
....................................AAGAGAGCTATCCGTCCACAGTC...............................................................................	23	4	2.75	1.50	0.00	0.00	1.25
........................................................................................TTTCATGGAATTGCTCTCTTTG............................	22	4	2.75	0.00	0.00	0.00	2.75
....................................AAGAGAGCTGTCCGTCGACAG.................................................................................	21	4	2.75	0.25	0.00	0.00	2.50
....................................AAGAGAGCTATCCATCGACAGTC...............................................................................	23	4	2.50	0.00	0.25	0.00	2.25
.......................................................................................CTGTCATGGACTTGCTCTCTTTG............................	23	4	2.50	1.00	0.50	0.00	1.00
....................................AAGAGAGCTATCCGTCGACATT................................................................................	22	4	2.50	0.00	0.00	0.00	2.50
....................................AAGAGAGCTATCCGTCGACAGTGT..............................................................................	24	2	5.00	0.00	0.00	0.00	5.00
.......................................................................................CTGTCATAGAATTGCTCTCTTTG............................	23	4	2.50	0.75	0.50	0.00	1.25
........................................................................................TGTCATGGAATTGCTCTCTTCG............................	22	4	2.50	0.50	0.25	0.00	1.75

droEug1

GTTCCA---G----ATCCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----GAAT--ACTGATTATAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT

Size

Hit Count

Total Norm

droBia1

CTC-CT---G----ATCCTCAGCGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT

Size

Hit Count

Total Norm

droTak1

GCTCCT---G----ATCCACCGCGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT

Size

Hit Count

Total Norm

droEle1

ATCCCAAAGG----ACTTCCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TTC

Size

Hit Count

Total Norm

droRho1

TCCGAA-AGG----ACTCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATCGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--ATC

Size

Hit Count

Total Norm

droFic1

AG-------G----ACTCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATAGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT

Size

Hit Count

Total Norm

droKik1

T----------------CTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--GCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAC--AAT

Size

Hit Count

Total Norm

droAna3

CCGCAA--GG----ATACTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AAACACGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT-----	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	4	5427.50	4776.50	300.50	332.75	17.75
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	4550.50	3204.00	782.00	526.00	38.50
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	4	4400.75	3914.50	183.50	295.75	7.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	4	4261.00	3730.00	231.25	271.75	28.00
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	4	2351.75	1499.25	733.25	116.25	3.00
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	4	2205.25	2062.00	34.00	108.25	1.00
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	4	1970.00	1612.00	134.75	199.00	24.25
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	4	1304.00	1164.50	59.50	79.75	0.25
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	4	1227.25	1002.00	113.50	108.75	3.00
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	4	791.25	512.75	232.75	45.25	0.50
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	4	613.75	544.75	25.50	43.25	0.25
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	4	416.50	389.25	9.75	17.50	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	4	282.75	256.25	7.25	18.75	0.50
........................................................................................TGTCATGGAATTGCTCTCTTTT............................	22	4	249.75	211.00	16.75	20.75	1.25
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	4	248.00	224.50	4.50	19.00	0.00
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	4	222.00	209.75	2.50	9.25	0.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	4	188.00	165.25	8.25	11.50	3.00
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	4	148.75	136.25	5.00	7.50	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTGT...........................	24	4	146.25	124.25	10.50	11.25	0.25
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	4	125.25	112.50	4.00	8.75	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	4	120.00	68.25	43.75	6.00	2.00
....................................AAGAGAGCTATCCGTCGACT..................................................................................	20	4	74.50	68.00	4.75	1.75	0.00
....................................AAGAGAGCTATCCGTCGACAGTTT..............................................................................	24	2	143.00	110.50	21.50	11.00	0.00
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	2	134.50	114.50	4.00	15.50	0.50
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	4	49.75	42.75	3.25	3.75	0.00
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	4	48.00	39.50	3.50	5.00	0.00
....................................AAGAGAGCTGTCCGTCGACAGT................................................................................	22	4	46.50	35.25	9.25	1.50	0.50
.........................................................................................GTCATGGAATTGCTCTCTTTGT...........................	22	4	46.50	38.25	6.50	1.25	0.50
....................................AAGAGATCTATCCGTCGACAGT................................................................................	22	4	42.00	38.25	3.50	0.25	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTATG............................	23	4	41.50	40.50	1.00	0.00	0.00
........................................................................................TGTCATGGAATTGCTCTCTTAG............................	22	4	41.00	40.00	1.00	0.00	0.00
....................................AAGAGAGATATCCGTCGACAGT................................................................................	22	4	40.00	34.25	4.25	1.25	0.25
........................................................................................TGTCATGGAATTTCTCTCTTTG............................	22	4	37.75	34.50	1.75	1.00	0.50
....................................AAGAGAGCTATCAGTCGACAGT................................................................................	22	4	33.50	32.25	0.50	0.75	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTGTA..........................	24	4	32.75	28.00	2.25	2.50	0.00
....................................AAGAGAGCTATCCGTCGACAAT................................................................................	22	4	32.50	29.50	2.50	0.50	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTCTG............................	23	4	30.50	28.50	1.00	1.00	0.00
....................................AATAGAGCTATCCGTCGACAGTC...............................................................................	23	4	30.50	16.25	14.00	0.00	0.25
....................................AAGAGAGCTATCCGTCGACATT................................................................................	22	4	29.75	27.50	0.75	1.25	0.25
....................................AAGAGAGCTATACGTCGACAGT................................................................................	22	4	29.75	28.25	0.75	0.75	0.00
....................................AAGAGATCTATCCGTCGACAGTC...............................................................................	23	4	29.25	21.00	7.75	0.25	0.25
....................................AAGAGAGCTATCCGTCGACACT................................................................................	22	4	28.75	26.25	1.00	1.25	0.25
....................................AAGATAGCTATCCGTCGACAGT................................................................................	22	4	27.75	25.50	2.00	0.25	0.00
....................................AAGAGAGCTATCCGTCGACACTC...............................................................................	23	4	27.25	21.00	3.00	3.25	0.00
.......................................................................................CTGTCATGGAATTTCTCTCTTTG............................	23	4	26.50	23.00	2.00	1.00	0.50
....................................AAGATAGCTATCCGTCGACAGTC...............................................................................	23	4	26.50	18.50	8.00	0.00	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTGA...........................	24	4	26.25	13.75	11.25	1.25	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTTT...........................	23	4	26.00	16.75	1.50	4.25	3.50
........................................................................................TGTCATGGAATTGCTCTCTTCG............................	22	4	26.00	25.50	0.25	0.25	0.00
....................................AAGAGAGCTATCAGTCGACAGTC...............................................................................	23	4	24.25	19.25	3.00	2.00	0.00
....................................AAGAGAGCTATCCGTCGACAATC...............................................................................	23	4	24.25	20.50	3.50	0.25	0.00
....................................AAGAGAGATATCCGTCGACAGTC...............................................................................	23	4	23.75	15.25	7.50	1.00	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTGTG............................	23	4	23.50	22.50	0.50	0.50	0.00
....................................AATAGAGCTATCCGTCGACAGT................................................................................	22	4	23.25	15.50	7.50	0.25	0.00
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	4	23.00	14.50	6.00	2.50	0.00
....................................AAGAGAGCTATACGTCGACAGTC...............................................................................	23	4	22.75	19.00	1.75	2.00	0.00
....................................AATAGAGCTATCCGTCGACAGTCT..............................................................................	24	2	44.50	12.50	32.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGACAT.................................................................................	21	4	22.25	19.25	2.75	0.25	0.00
....................................AAGAGATCTATCCGTCGACA..................................................................................	20	4	21.75	21.00	0.25	0.50	0.00
....................................AAGAGAGCTGTCCGTCGACAGTC...............................................................................	23	4	21.50	16.50	3.75	1.00	0.25
........................................................................................TGTCATGGAATAGCTCTCTTTG............................	22	4	21.00	21.00	0.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGACAGC................................................................................	22	4	20.00	14.25	0.00	5.75	0.00
........................................................................................TGTCATGGAATTACTCTCTTTG............................	22	4	19.75	19.25	0.00	0.50	0.00
........................................................................................TGTCATGGAATTGCTATCTTTG............................	22	4	19.50	17.50	1.00	1.00	0.00
....................................AAGAGAGCTATCCGTCGACATTC...............................................................................	23	4	19.00	17.00	1.25	0.50	0.25
........................................................................................TGTCATGGAATTGATCTCTTTG............................	22	4	18.50	16.00	0.50	2.00	0.00
....................................AAGAGAGCTATCCGTAGACAGT................................................................................	22	4	18.25	16.50	0.25	1.50	0.00
.......................................................................................CTGTCATGGAAATGCTCTCTTTG............................	23	4	18.25	18.25	0.00	0.00	0.00
........................................................................................TGTCATGGAATTTCTCTCTTTGT...........................	23	4	17.75	13.75	1.75	1.50	0.75
....................................AAGAGAGCTATGCGTCGACAGT................................................................................	22	4	17.50	17.50	0.00	0.00	0.00
....................................AAGAGATCTATCCGTCGACAGTCT..............................................................................	24	2	35.00	15.50	19.00	0.50	0.00
........................................................................................TGTCATGGAATTGCTCTCTTAGT...........................	23	4	17.50	17.00	0.50	0.00	0.00
....................................AAGAGAGATATCCGTCGACA..................................................................................	20	4	17.00	15.75	0.75	0.50	0.00
.......................................................................................CTGTCATGGAACTGCTCTCTTTG............................	23	4	17.00	16.50	0.00	0.50	0.00
....................................AAGAGAGATATCCGTCGACAGTCT..............................................................................	24	2	33.50	19.50	14.00	0.00	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTGC...........................	24	4	16.75	15.50	0.25	1.00	0.00
....................................AAGAGAGCTATCCGTCGACAGTCTT.............................................................................	25	2	33.50	26.00	4.00	3.50	0.00
....................................AAGAGAGCTATCCGTCGACAGCC...............................................................................	23	4	16.75	6.25	2.25	7.75	0.50
........................................................................................TGTAATGGAATTGCTCTCTTTG............................	22	4	16.50	15.25	1.00	0.25	0.00
.......................................................................................CTGTCATGGAATCGCTCTCTTTG............................	23	4	16.00	14.75	1.25	0.00	0.00
........................................................................................TGTCATGGAATTGCTCTCT...............................	19	4	16.00	12.25	0.50	3.00	0.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTTT...........................	24	4	15.50	14.00	0.50	1.00	0.00
.......................................................................................CTGTCATGGAATAGCTCTCTTTG............................	23	4	15.50	15.50	0.00	0.00	0.00
.........................................................................................GTCATGGAATTGCTCTCTTTG............................	21	4	15.50	14.00	0.75	0.75	0.00
....................................AAGAGAGCTATCCGTCTACAGTC...............................................................................	23	4	15.00	8.50	4.25	2.00	0.25
....................................AAGAGAGCTATCAGTCGACAGTCT..............................................................................	24	2	29.00	22.00	6.00	1.00	0.00
.......................................................................................CTGTCATGGAAGTGCTCTCTTTG............................	23	4	14.50	13.75	0.00	0.50	0.25
....................................AAGAGAGCTATCCGTCTACAGT................................................................................	22	4	14.25	12.00	2.00	0.25	0.00
.......................................................................................ATGTCATGGAATTGCTCTCTTTG............................	23	4	13.75	9.50	1.75	2.50	0.00
....................................AAGATAGCTATCCGTCGACA..................................................................................	20	4	13.50	13.25	0.25	0.00	0.00
....................................AAGAGAGCTGTCCGTCGACAG.................................................................................	21	4	13.50	7.25	5.00	1.25	0.00
....................................AAGATAGCTATCCGTCGACAGTCT..............................................................................	24	2	27.00	15.50	11.00	0.50	0.00
....................................AAGAGAGCTACCCGTCGACAGT................................................................................	22	4	13.50	10.50	1.50	1.50	0.00
....................................AAGAGAGCTATCCGTCGACAATCT..............................................................................	24	2	26.00	18.50	7.00	0.50	0.00
........................................................................................TGTCATGGAATTGCTCTCTTGG............................	22	4	13.00	12.50	0.25	0.25	0.00
....................................AAGAGAGCTATCCGTCGACAA.................................................................................	21	4	12.75	12.25	0.25	0.25	0.00
....................................AAGAGAGCTATCAGTCGACA..................................................................................	20	4	12.75	12.25	0.25	0.25	0.00
....................................AAGAGAGCTATACGTCGACA..................................................................................	20	4	12.75	12.00	0.00	0.75	0.00
........................................................................................TGTCATGGAATTGCTCTCTTA.............................	21	4	12.25	11.75	0.50	0.00	0.00
.......................................................................................CTGTCATGGAATTGCTATCTTTG............................	23	4	12.00	10.00	1.25	0.75	0.00
....................................AAGAGAGCTATCCGTCGACACTCT..............................................................................	24	2	24.00	17.00	6.50	0.50	0.00

droBip1

GCCCCA-AGG----ATACTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT-----

Size

Hit Count

Total Norm

dp4

TAT------A----ATACTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT----A-A---TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	4	5974.75	2582.25	76.25	249.50	3066.75
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	5669.75	3693.75	209.50	356.50	1410.00
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	4	4075.75	3595.75	82.50	386.75	10.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	4	3897.00	3339.50	201.00	341.00	15.50
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	4	2664.00	2186.25	144.25	330.75	2.75
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	4	1769.00	885.00	6.25	75.50	802.25
...................................AAAGAGAGCTGTCCGTCGACAGT................................................................................	23	4	1597.50	1302.50	194.00	95.00	6.00
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	4	1008.25	946.00	1.25	58.00	3.00
...................................AAAGAGAGCTGTCCGTCGACAG.................................................................................	22	4	999.25	778.75	85.25	63.00	72.25
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	4	770.75	685.50	7.75	33.75	43.75
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	4	607.50	454.25	2.75	13.00	137.50
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	4	577.50	440.75	0.50	37.75	98.50
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	4	568.75	522.25	2.50	33.00	11.00
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	4	462.50	428.50	3.75	10.50	19.75
...................................AAAGAGAGCTGTCCGTCGACA..................................................................................	21	4	461.00	335.50	1.25	27.50	96.75
...................................AAAGAGAGCTGTCCGTCGAC...................................................................................	20	4	246.50	105.00	0.25	6.00	135.25
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	4	224.50	192.75	3.50	26.75	1.50
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	4	220.50	197.75	0.75	18.00	4.00
........................................................................................TGTCATGGAATTGCTCTCTTTT............................	22	4	135.75	120.50	0.75	14.25	0.25
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	4	115.50	95.00	7.50	12.75	0.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTGT...........................	24	4	109.25	97.25	2.00	10.00	0.00
.........................................................................................GTCATGGAATTGCTCTCTTTGT...........................	22	4	104.50	93.50	3.75	7.25	0.00
....................................AAGAGAGCTATCCGTCGACAGC................................................................................	22	4	102.00	10.75	0.25	2.75	88.25
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	4	89.50	82.75	0.25	5.75	0.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	4	89.50	78.50	3.00	7.25	0.75
....................................AAGAGAGCTATCCGTCGACAGG................................................................................	22	4	71.00	1.50	0.25	0.50	68.75
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	4	59.75	47.00	0.50	4.75	7.50
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	4	55.00	24.25	0.25	2.50	28.00
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	4	49.75	45.50	0.00	3.00	1.25
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	4	45.25	40.00	1.50	3.75	0.00
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	4	30.75	17.75	0.50	1.25	11.25
...................................AAAGAGAGCTGTCCGTCGA....................................................................................	19	4	30.00	26.25	0.25	1.00	2.50
...................................AAAGAGAGCTATCCGTCGACAGT................................................................................	23	4	28.00	13.50	1.50	0.75	12.25
...................................AAAGAGAGCTGTCCGTCGACT..................................................................................	21	4	27.00	20.25	0.00	1.75	5.00
....................................AAGAGAGCTATCCGTCGACAGCC...............................................................................	23	4	26.25	17.00	1.50	6.25	1.50
...................................AAAGAGAGCTGTCCGTCGACAGTT...............................................................................	24	4	23.75	12.25	7.50	3.25	0.75
....................................AAGAGAGCTATCCGTCGACT..................................................................................	20	4	23.75	16.75	0.00	0.00	7.00
........................................................................................TGTCATGGAATTGCTCTCTTTGTA..........................	24	4	22.25	19.00	2.00	1.25	0.00
....................................AAGAGAGCTATCCGTCGACAGTCCA.............................................................................	25	4	18.00	16.00	0.25	1.00	0.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTGA...........................	24	4	17.50	13.00	2.00	1.50	1.00
.....................................AGAGAGCTATCCGTCGACAGTC...............................................................................	22	4	16.00	11.00	1.25	0.50	3.25
....................................AAGAGAGCTATCCGTCGACAGTTT..............................................................................	24	2	29.00	22.50	0.00	1.00	5.50
...................................AAAGAGAGCTATCCGTCGACAG.................................................................................	22	4	12.00	8.00	0.25	0.50	3.25
....................................AAGAGAGCTATCCGTCGACAGTCCT.............................................................................	25	2	23.50	23.50	0.00	0.00	0.00
....................................AAGAGAGCTGTCCGTCGACAGT................................................................................	22	4	10.75	8.75	1.00	0.75	0.25
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	4	10.50	8.50	0.00	1.00	1.00
...................................AAAGAGAGCTGTCCGTCGACAGTA...............................................................................	24	4	10.50	8.00	2.00	0.50	0.00
.........................................................................................GTCATGGAATTGCTCTCTTTG............................	21	4	10.50	10.25	0.25	0.00	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTC............................	22	4	10.00	9.25	0.25	0.50	0.00
....................................AAGAGAGCTATCGGTCGACAGT................................................................................	22	4	9.50	0.25	0.00	0.00	9.25
...................................AAAGAGAGCTATCCGTCGACA..................................................................................	21	4	9.50	8.50	0.00	0.50	0.50
........................................GAGCTATCCGTCGACAGT................................................................................	18	4	9.25	0.00	0.00	0.00	9.25
....................................AAGAGGGCTATCCGTCGACAGTC...............................................................................	23	4	9.00	4.75	0.75	0.50	3.00
.....................................AGAGAGCTATCCGTCGACAGT................................................................................	21	4	8.75	4.25	0.50	0.00	4.00
........................................................................................TGTCATGGAATTGCTCTCTTTTT...........................	23	4	8.50	5.75	1.00	1.75	0.00
....................................AAGAGAGCTATCCGCCGACAGTC...............................................................................	23	4	8.25	5.25	0.25	1.75	1.00
........................................................................................TGCCATGGAATTGCTCTCTTTG............................	22	4	8.25	5.50	0.25	2.50	0.00
....................................AGGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	8.00	3.75	0.75	1.00	2.50
...................................AAAGAGAGCTGTCCGTCGACCGT................................................................................	23	4	7.50	1.00	5.50	1.00	0.00
...................................AAAGAGAGCTGTCCGTCGACAGC................................................................................	23	4	7.50	3.75	1.50	2.00	0.25
....................................AAGAGGGCTATCCGTCGACAGT................................................................................	22	4	7.25	3.25	0.00	0.25	3.75
........................................................................................TGGCATGGAATTGCTCTCTTTGT...........................	23	4	7.25	0.75	2.25	4.25	0.00
....................................AAGAGAGCTATCCGTCGACAGTAA..............................................................................	24	4	7.00	2.00	0.00	0.25	4.75
....................................AAGAGAGCTATCAGTCGACAGT................................................................................	22	4	6.75	0.25	0.25	0.25	6.00
....................................AAGAGAGCTATCCGTCTACAGTC...............................................................................	23	4	6.75	5.50	0.25	0.50	0.50
........................................GAGCTATCCGTCGACAGTC...............................................................................	19	4	6.75	0.00	0.00	0.25	6.50
....................................AAGAGAGCTATCCGTCCACAGTC...............................................................................	23	4	6.50	3.25	0.50	2.25	0.50
...................................AAAGAGAGCTGTCCGTCGACAGA................................................................................	23	4	6.50	4.75	0.50	1.25	0.00
....................................AAGGGAGCTATCCGTCGACAGT................................................................................	22	4	6.50	2.50	0.25	0.00	3.75
....................................AAGAGAGCTACCCGTCGACAGTC...............................................................................	23	4	6.50	3.75	0.50	0.50	1.75
.......................................................................................CTGCCATGGAATTGCTCTCTTTG............................	23	4	6.25	4.75	0.75	0.75	0.00
....................................AAGAGAGCTATCCGTCGACCGT................................................................................	22	4	6.00	4.00	0.75	1.00	0.25
.......................................................................................CTGTCATGGAATTGCTCTCCTTG............................	23	4	5.50	5.00	0.50	0.00	0.00
........................................................................................TGTCATGGAATTGCTCCCTTTG............................	22	4	5.50	4.25	0.50	0.75	0.00
....................................AGGAGAGCTATCCGTCGACAGT................................................................................	22	4	5.50	3.00	0.25	0.25	2.00
...................................CAAGAGAGCTATCCGTCGACAGTC...............................................................................	24	4	5.50	4.50	0.25	0.50	0.25
........................................................................................TGTCATGGAATTGCTCTCCTTG............................	22	4	5.50	5.50	0.00	0.00	0.00
........................................................................................TGTCGTGGAATTGCTCTCTTTG............................	22	4	5.25	3.75	0.25	1.25	0.00
........................................................................................CGTCATGGAATTGCTCTCTTTG............................	22	4	5.00	4.00	0.25	0.75	0.00
....................................GAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	4.75	3.00	0.00	0.75	1.00
....................................AAGAGAGCTATCCGTCGCCAGTC...............................................................................	23	4	4.75	2.75	0.75	1.00	0.25
....................................AAGAGAGCTACCCGTCGACAGT................................................................................	22	4	4.75	2.25	0.00	0.25	2.25
......................................AAGAGCTATCCGTCGACAGTC...............................................................................	21	4	4.75	4.00	0.00	0.25	0.50
....................................AAGAGAGCTATCTGTCGACAGTC...............................................................................	23	4	4.75	2.25	0.50	1.50	0.50
....................................AAGGGAGCTATCCGTCGACAGTC...............................................................................	23	4	4.75	3.25	0.00	0.25	1.25
........................................................................................TGGCATGGAATTGCTCTCTTTG............................	22	4	4.75	1.25	0.00	3.50	0.00
....................................AAGAGAGCTATCCGTTGACAGTC...............................................................................	23	4	4.50	1.75	1.00	0.25	1.50
...................................AAAGAGAGCTGTCCGTCGACAA.................................................................................	22	4	4.50	4.50	0.00	0.00	0.00
........................................................................................TGTCATGGAATTGCCCTCTTTG............................	22	4	4.50	4.50	0.00	0.00	0.00
....................................GAGAGAGCTATCCGTCGACAGT................................................................................	22	4	4.50	2.50	0.25	0.25	1.50
....................................AAGAGAGCTATCCGTCGACCGTC...............................................................................	23	4	4.50	2.25	1.75	0.50	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTA............................	22	4	4.50	4.00	0.00	0.50	0.00
........................................................................................TGCCATGGAATTGCTCTCTTTGT...........................	23	4	4.50	3.50	0.25	0.75	0.00
........................................................................................TTTCATGGAATTGCTCTCTTTG............................	22	4	4.25	3.75	0.00	0.50	0.00
....................................AAGAGAGCTATCCGTCGACAC.................................................................................	21	4	4.25	1.50	0.00	1.00	1.75
.......................................................................................CTGTCATGGAATTGCTCCCTTTG............................	23	4	4.25	4.25	0.00	0.00	0.00
........................................................................................TGTCATGGAATTTCTCTCTTTGT...........................	23	4	4.25	3.00	0.50	0.75	0.00
.......................................................................................ATGTCATGGAATTGCTCTCTTTG............................	23	4	4.25	3.00	0.25	1.00	0.00
....................................AAGAGAGCTATCCGCCGACAGT................................................................................	22	4	4.25	2.50	0.00	0.75	1.00
....................................AATAGAGCTATCCGTCGACAGTC...............................................................................	23	4	4.00	1.75	0.00	0.50	1.75
....................................AAGAGAGCTATCTGTCGACAGT................................................................................	22	4	4.00	1.75	0.00	0.50	1.75

droPer1

TTTTCT---GTATAATACTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT----A-A---TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	4	4898.25	2214.00	25.75	36.50	16.75	2605.25
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	4673.00	1688.50	37.75	72.75	44.25	2829.75
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	4	1782.50	1621.50	37.75	78.50	25.50	19.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	4	1779.50	1508.25	46.25	84.50	27.50	113.00
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	4	1739.00	1591.50	24.75	79.50	21.00	22.25
...................................AAAGAGAGCTGTCCGTCGACAGT................................................................................	23	4	1486.50	1412.00	33.00	18.00	14.00	9.50
...................................AAAGAGAGCTGTCCGTCGACAG.................................................................................	22	4	1433.75	1355.25	19.00	11.25	4.25	44.00
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	4	1312.75	872.25	2.25	13.75	6.50	418.00
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	4	441.00	383.25	2.25	2.50	2.75	50.25
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	4	348.00	330.00	0.75	13.00	4.00	0.25
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	4	342.00	320.25	1.50	3.25	1.00	16.00
.........................................................................................GTCATGGAATTGCTCTCTTTGT...........................	22	4	339.00	333.25	1.00	3.50	1.25	0.00
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	4	299.50	274.00	0.50	5.75	1.00	18.25
...................................AAAGAGAGCTGTCCGTCGACA..................................................................................	21	4	294.25	270.25	1.25	5.50	3.25	14.00
....................................AAGAGAGCTATCCGTCGACAGG................................................................................	22	4	266.75	1.00	0.50	0.50	0.00	264.75
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	4	193.50	127.00	1.25	5.50	3.00	56.75
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	4	163.75	144.50	1.50	8.00	3.50	6.25
....................................AAGAGAGCTATCCGTCGACAGC................................................................................	22	4	143.25	4.75	0.00	0.50	0.25	137.75
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	4	109.25	99.75	1.25	3.25	1.75	3.25
...................................AAAGAGAGCTGTCCGTCGAC...................................................................................	20	4	101.50	71.25	0.25	1.00	0.50	28.50
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	4	77.25	70.75	2.25	3.25	1.00	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	4	72.25	64.75	0.75	3.00	0.00	3.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTGT...........................	24	4	62.50	58.00	0.25	2.25	0.50	1.50
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	4	57.00	28.50	0.50	0.00	0.00	28.00
...................................AAAGAGAGCTATCCGTCGACAGT................................................................................	23	4	48.25	16.25	0.25	0.25	0.25	31.25
........................................................................................TGTCATGGAATTGCTCTCTTTT............................	22	4	36.50	33.50	0.25	2.00	0.75	0.00
...................................AAAGAGAGCTGTCCGTCGA....................................................................................	19	4	34.25	33.50	0.00	0.00	0.25	0.50
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	4	31.25	23.00	0.25	0.00	0.00	8.00
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	4	29.50	27.25	0.00	1.00	0.50	0.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	4	25.25	23.50	0.75	0.50	0.50	0.00
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	4	24.75	15.50	0.50	0.25	0.25	8.25
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	4	24.75	20.00	1.25	1.00	0.00	2.50
...................................AAAGAGAGCTGTCCGTCGACT..................................................................................	21	4	24.00	23.50	0.00	0.00	0.00	0.50
.........................................................................................GTCATGGAATTGCTCTCTTTG............................	21	4	22.25	22.25	0.00	0.00	0.00	0.00
...................................AAAGAGAGCTGTCCGTCGACAGTT...............................................................................	24	4	20.50	19.00	1.25	0.25	0.00	0.00
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	4	19.00	17.50	0.25	0.25	0.25	0.75
........................................GAGCTATCCGTCGACAGTC...............................................................................	19	4	16.75	0.75	0.00	0.00	0.00	16.00
........................................................................................TGTCATGGAATTGCTCTCTTTGTA..........................	24	4	14.75	11.75	0.50	0.25	0.25	2.00
.....................................AGAGAGCTATCCGTCGACAGTC...............................................................................	22	4	14.75	4.75	0.00	0.75	0.50	8.75
....................................AAGAGAGCTATCGGTCGACAGTC...............................................................................	23	4	12.25	0.00	0.00	0.00	0.00	12.25
...................................AAAGAGAGCTATCCGTCGACAG.................................................................................	22	4	11.75	6.25	0.00	0.00	0.00	5.50
...................................AAAGAGAGCTGTCCGTCGACAGTA...............................................................................	24	4	11.25	10.25	0.25	0.00	0.50	0.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTGA...........................	24	4	9.75	7.50	0.25	0.25	0.50	1.25
....................................AAGAGAGCTATCCGTCGACAGAC...............................................................................	23	4	9.00	0.00	0.00	0.00	0.00	9.00
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	4	8.75	6.75	0.00	0.25	0.00	1.75
....................................AAGAGAGCTATCCGTCGACAGTTT..............................................................................	24	2	17.00	16.00	0.50	0.00	0.00	0.50
....................................AAGAGAGCTATCCGTCGACAGCC...............................................................................	23	4	8.50	2.00	0.00	0.75	0.75	5.00
........................................GAGCTATCCGTCGACAGT................................................................................	18	4	7.75	0.00	0.00	0.00	0.00	7.75
....................................AAGAGAGCTATCCGTCGACT..................................................................................	20	4	7.75	7.75	0.00	0.00	0.00	0.00
....................................AATAGAGCTATCCGTCGACAGT................................................................................	22	4	7.00	2.25	0.00	0.00	0.00	4.75
........................................................................................TGTCATGGAATTGCTCTCT...............................	19	4	6.75	4.00	0.00	0.00	0.00	2.75
....................................AAGGGAGCTATCCGTCGACAGT................................................................................	22	4	6.50	2.00	0.25	0.00	0.00	4.25
....................................AAGAGAGCTATCAGTCGACAGTC...............................................................................	23	4	6.50	0.25	0.00	0.00	0.25	6.00
....................................AAGAGAGCTATCCGTCTACAGT................................................................................	22	4	6.25	5.50	0.00	0.00	0.25	0.50
....................................AAGAGAGCTATCAGTCGACAGT................................................................................	22	4	6.25	1.00	0.00	0.00	0.00	5.25
....................................AGGAGAGCTATCCGTCGACAGT................................................................................	22	4	6.00	1.50	0.00	0.00	0.50	4.00
....................................AAGAGAGCTGTCCGTCGACAGT................................................................................	22	4	6.00	4.75	0.00	0.50	0.00	0.75
....................................AAGAGGGCTATCCGTCGACAGT................................................................................	22	4	5.75	1.75	0.00	0.00	0.00	4.00
....................................AATAGAGCTATCCGTCGACAGTC...............................................................................	23	4	5.75	2.00	0.00	0.00	0.00	3.75
....................................AAGAGAGCTATCGGTCGACAGT................................................................................	22	4	5.75	0.00	0.00	0.00	0.00	5.75
....................................AAGAGAGCTACCCGTCGACAGTC...............................................................................	23	4	5.75	2.50	0.00	0.00	0.00	3.25
....................................AAGGGAGCTATCCGTCGACAGTC...............................................................................	23	4	5.75	0.75	0.25	0.25	0.00	4.50
...................................AAAGAGAGCTGTCCGTCGACAGA................................................................................	23	4	5.50	5.00	0.00	0.00	0.50	0.00
.....................................AGAGAGCTATCCGTCGACAGT................................................................................	21	4	5.50	1.75	0.00	0.00	0.25	3.50
....................................AAGAGAGCTATCCGTCGACAC.................................................................................	21	4	5.50	0.25	0.00	0.00	0.00	5.25
...................................AAAGAGAGCTGTCCGTCGACAGC................................................................................	23	4	5.50	4.75	0.00	0.00	0.00	0.75
.........................................................................................GTCATGGAATTGCTCTCTTTGC...........................	22	4	5.50	5.50	0.00	0.00	0.00	0.00
....................................AAGAGAGCTATCCGTTGACAGT................................................................................	22	4	5.25	4.50	0.00	0.25	0.00	0.50
....................................AAGAGGGCTATCCGTCGACAGTC...............................................................................	23	4	5.25	0.50	0.00	0.25	0.50	4.00
....................................AAGAGAGCTACCCGTCGACAGT................................................................................	22	4	5.25	2.25	0.00	0.00	0.25	2.75
....................................AAGAGAGCTATCCGTCGACAGTCCT.............................................................................	25	2	10.00	9.00	0.00	0.00	0.00	1.00
....................................AAGAGAGCTATCCGTCGACAGTAA..............................................................................	24	4	5.00	1.25	0.00	0.00	0.00	3.75
....................................AGGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	4.75	1.00	0.00	0.00	0.00	3.75
....................................AAGAGAGCTATCCGTCTACAGTC...............................................................................	23	4	4.75	2.25	0.25	0.00	0.25	2.00
....................................AAGAGAGCTATCTGTCGACAGT................................................................................	22	4	4.50	1.25	0.00	0.25	0.00	3.00
....................................AAGAGAGCTATCCGCCGACAGT................................................................................	22	4	4.50	2.00	0.00	0.25	0.00	2.25
....................................AAGATAGCTATCCGTCGACAGT................................................................................	22	4	4.50	2.75	0.00	0.00	0.00	1.75
...................................AAAGAGAGCTGTCCGTCGACAGTC...............................................................................	24	4	4.50	4.25	0.25	0.00	0.00	0.00
...................................AAAGAGAGCTATCCGTCGACA..................................................................................	21	4	4.25	4.00	0.00	0.00	0.00	0.25
....................................AAGAGACCTATCCGTCGACAGT................................................................................	22	4	4.00	0.75	0.00	0.00	0.25	3.00
....................................GAGAGAGCTATCCGTCGACAGT................................................................................	22	4	4.00	2.00	0.00	0.00	0.00	2.00
.......................................................................................ATGTCATGGAATTGCTCTCTTTG............................	23	4	3.75	3.25	0.50	0.00	0.00	0.00
....................................AAGATAGCTATCCGTCGACAGTC...............................................................................	23	4	3.75	1.50	0.00	0.00	0.00	2.25
....................................AAGAGATCTATCCGTCGACAGT................................................................................	22	4	3.75	1.00	0.00	0.00	0.25	2.50
....................................AAGAGAGCTATCCGCCGACAGTC...............................................................................	23	4	3.75	1.25	0.00	0.25	1.00	1.25
....................................AAGAGAGCCATCCGTCGACAGT................................................................................	22	4	3.75	1.50	0.00	0.00	0.00	2.25
....................................AAGAGAGCTATCCGTCAACAGTC...............................................................................	23	4	3.75	1.00	0.00	0.25	0.00	2.50
....................................AAGAGAGCTATCCATCGACAGTC...............................................................................	23	4	3.75	0.50	0.00	0.25	0.50	2.50
.......................................AGAGCTATCCGTCGACAGT................................................................................	19	4	3.50	0.25	0.00	0.00	0.00	3.25
....................................AAGAGAGCCATCCGTCGACAGTC...............................................................................	23	4	3.50	0.50	0.25	0.00	0.00	2.75
.........................................AGCTATCCGTCGACAGTC...............................................................................	18	4	3.50	0.00	0.00	0.00	0.00	3.50
....................................CAGAGAGCTATCCGTCGACAGT................................................................................	22	4	3.50	3.50	0.00	0.00	0.00	0.00
........................................................................................TGTCATGGAATTGCCCTCTTTG............................	22	4	3.50	3.50	0.00	0.00	0.00	0.00
...................................AAAGAGAGCTGTCCGTCGACAA.................................................................................	22	4	3.50	3.50	0.00	0.00	0.00	0.00
...................................CAAGAGAGCTATCCGTCGACAGTC...............................................................................	24	4	3.50	2.00	0.00	0.00	0.00	1.50
....................................AAGAGAGCTGTCCGTCGACAG.................................................................................	21	4	3.25	3.25	0.00	0.00	0.00	0.00
....................................AAGAGATCTATCCGTCGACAGTC...............................................................................	23	4	3.25	0.50	0.00	0.00	0.00	2.75
....................................AAGAGAGCTATCCGTCGGCAGTC...............................................................................	23	4	3.25	1.00	0.25	0.00	0.50	1.50
....................................AAAAGAGCTATCCGTCGACAGTC...............................................................................	23	4	3.25	2.00	0.00	0.50	0.00	0.75
....................................AAGAGAGCTATCCGTCGACAGTCG..............................................................................	24	4	3.00	0.00	0.00	0.00	0.25	2.75
...................................AAAGAGAGCTGTCCGTCGACCGT................................................................................	23	4	3.00	1.00	2.00	0.00	0.00	0.00

droWil1

TC--------------------CGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCCAGTTTAATACAT--CCGAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGGT--TTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	9810.25	2269.75	2418.50	187.75	4934.25
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	4	8491.50	1632.75	578.75	63.25	6216.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	4	4995.00	2271.50	2298.50	163.50	261.50
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	4	4290.00	889.25	151.25	21.50	3228.00
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	4	2157.25	1380.75	724.00	29.25	23.25
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	4	2143.00	1637.50	422.25	38.00	45.25
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	4	992.25	693.50	13.00	7.75	278.00
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	4	941.50	800.25	118.25	17.25	5.75
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	4	659.75	406.75	108.50	40.25	104.25
....................................AAGAGAGCTATCCGTCGACAGG................................................................................	22	4	551.75	0.50	0.25	0.00	551.00
....................................AAGAGAGCTATCCGTCGACAGC................................................................................	22	4	444.50	5.75	1.00	0.75	437.00
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	4	434.75	209.75	35.00	5.75	184.25
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	4	409.00	338.00	35.25	17.00	18.75
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	4	336.50	284.75	35.25	2.75	13.75
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	4	335.75	127.25	20.25	10.00	178.25
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	4	200.75	63.00	1.00	1.00	135.75
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	4	132.75	116.00	7.00	1.75	8.00
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	4	116.50	96.50	2.50	3.00	14.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTGT...........................	24	4	90.00	62.25	18.50	2.00	7.25
.........................................................................................GTCATGGAATTGCTCTCTTTGT...........................	22	4	89.25	50.75	36.75	1.75	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	4	53.00	30.50	13.00	7.75	1.75
....................................AAGAGAGCTATCCGTCGACAC.................................................................................	21	4	52.75	1.00	0.00	0.00	51.75
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	4	51.25	34.25	13.75	1.00	2.25
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	4	47.50	27.25	1.50	1.50	17.25
........................................................................................TGTCATGGAATTGCTCTCTTTT............................	22	4	46.75	43.50	2.50	0.50	0.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	4	45.75	32.00	12.00	0.50	1.25
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	4	42.50	14.50	7.75	1.00	19.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTGA...........................	24	4	39.25	10.25	16.00	7.75	5.25
........................................GAGCTATCCGTCGACAGTC...............................................................................	19	4	32.50	0.25	0.00	0.00	32.25
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	4	23.50	4.50	5.25	0.50	13.25
........................................GAGCTATCCGTCGACAGT................................................................................	18	4	23.00	0.00	0.25	0.00	22.75
.....................................AGAGAGCTATCCGTCGACAGTC...............................................................................	22	4	19.00	2.00	2.50	0.25	14.25
........................................................................................TGTCATGGAATTGCTCTCTTTGTA..........................	24	4	18.25	5.50	10.75	1.00	1.00
....................................AAGAGAGCTATCGGTCGACAGT................................................................................	22	4	17.50	0.00	0.00	0.00	17.50
....................................AAGAGGGCTATCCGTCGACAGTC...............................................................................	23	4	17.25	3.75	4.25	0.50	8.75
....................................AAGAGAGCTATCAGTCGACAGTC...............................................................................	23	4	17.00	0.25	4.00	0.50	12.25
.....................................AGAGAGCTATCCGTCGACAGT................................................................................	21	4	16.75	2.00	1.50	0.25	13.00
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	4	16.25	13.75	0.75	0.25	1.50
....................................AAGAGAGCTATCCGTCGACAGTCCA.............................................................................	25	4	15.75	8.00	0.00	0.50	7.25
....................................AAGAGAGCTATCCGTCGACT..................................................................................	20	4	15.75	7.75	0.00	0.25	7.75
.........................................................................................GTCATGGAATTGCTCTCTTTG............................	21	4	15.25	12.50	2.75	0.00	0.00
....................................AAGAGAGCTGTCCGTCGACAGTC...............................................................................	23	4	15.25	5.75	5.75	1.50	2.25
....................................AAGAGGGCTATCCGTCGACAGT................................................................................	22	4	15.00	1.25	1.00	0.25	12.50
....................................AAGAGAGCTATCCGTCGACAGTCG..............................................................................	24	4	15.00	3.00	0.00	0.00	12.00
....................................AAGAGAGCTGTCCGTCGACAGT................................................................................	22	4	14.50	8.25	3.00	1.00	2.25
....................................AAGAGAGCTATCCGTCGACAGAC...............................................................................	23	4	14.25	0.50	0.00	0.25	13.50
....................................AAGAGAGCTATCGGTCGACAGTC...............................................................................	23	4	14.25	0.00	0.00	0.00	14.25
....................................AAGAGATCTATCCGTCGACAGTC...............................................................................	23	4	13.75	2.00	4.00	0.00	7.75
....................................AATAGAGCTATCCGTCGACAGTC...............................................................................	23	4	13.50	1.75	4.00	0.25	7.50
....................................AAGGGAGCTATCCGTCGACAGT................................................................................	22	4	12.50	2.25	1.25	0.00	9.00
.....................................AGAGAGCTGTCCGTCGACAGT................................................................................	21	4	12.50	10.00	1.25	0.75	0.50
....................................AAGAGAGCTATCAGTCGACAGT................................................................................	22	4	12.25	0.00	1.00	0.50	10.75
....................................AAGAGAGCTATCCGCCGACAGTC...............................................................................	23	4	12.00	3.50	5.75	0.50	2.25
....................................AAGAGAGCTATCCGTCGACAGCC...............................................................................	23	4	12.00	4.00	2.50	1.00	4.50
....................................AAGAGAGCTATCCGTCGACGG.................................................................................	21	4	11.25	0.75	0.25	0.00	10.25
....................................AAGAGAGCTATCCGTCTACAGTC...............................................................................	23	4	11.25	4.00	3.75	0.75	2.75
....................................AAGGGAGCTATCCGTCGACAGTC...............................................................................	23	4	11.00	2.25	3.50	0.50	4.75
....................................AGGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	10.50	2.25	3.25	0.00	5.00
....................................AAGAGATCTATCCGTCGACAGT................................................................................	22	4	10.25	0.75	1.25	0.00	8.25
....................................AAGAGAGCTATCCGTCGACAGTCCT.............................................................................	25	4	10.25	8.00	0.75	0.50	1.00
....................................AAGATAGCTATCCGTCGACAGTC...............................................................................	23	4	10.00	2.00	4.50	0.25	3.25
....................................AAGAGAGCTACCCGTCGACAGTC...............................................................................	23	4	10.00	2.50	2.50	0.00	5.00
........................................................................................TGTCATGGAATTGCTCTCT...............................	19	4	9.75	5.25	0.00	1.00	3.50
.......................................................................................CTGTCATGGAATTGCTCTCCTTG............................	23	4	9.75	5.50	3.25	1.00	0.00
....................................AAGAGAGCTATCCGTCAACAGTC...............................................................................	23	4	9.50	2.50	2.25	0.75	4.00
.......................................................................................CTGCCATGGAATTGCTCTCTTTG............................	23	4	9.50	5.75	3.25	0.00	0.50
....................................AAGAGAGCTATCGGTCGACAG.................................................................................	21	4	9.25	0.25	0.00	0.00	9.00
....................................AATAGAGCTATCCGTCGACAGT................................................................................	22	4	9.25	0.75	0.50	0.25	7.75
....................................AAGAGAGCTGTCCGTCGACAG.................................................................................	21	4	8.75	5.75	0.75	0.25	2.00
.......................................................................................CTGTCATGGAATTGCCCTCTTTG............................	23	4	8.50	3.50	4.25	0.50	0.25
....................................AAGAGACCTATCCGTCGACAGTC...............................................................................	23	4	8.50	1.75	1.75	0.25	4.75
......................................AAGAGCTATCCGTCGACAGTC...............................................................................	21	4	8.25	3.25	2.00	0.25	2.75
....................................AAGAGAGCTATCCGTCGACAGTTT..............................................................................	24	2	16.00	10.50	0.50	0.00	5.00
....................................AGGAGAGCTATCCGTCGACAGT................................................................................	22	4	8.00	2.50	0.25	0.00	5.25
....................................AAGGGAGCTATCCGTCGACAG.................................................................................	21	4	7.75	0.75	0.50	0.00	6.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTGC...........................	24	4	7.50	5.00	0.75	0.00	1.75
....................................AAGAGAGCTATCCGTCGACG..................................................................................	20	4	7.50	0.25	0.25	0.00	7.00
.......................................................................................ATGTCATGGAATTGCTCTCTTTG............................	23	4	7.50	0.50	7.00	0.00	0.00
....................................AAGAGAGCTATCTGTCGACAGTC...............................................................................	23	4	7.25	2.75	2.00	0.25	2.25
........................................................................................TGTCATGGAATTGCTCTCTTTTT...........................	23	4	7.25	5.75	1.25	0.00	0.25
....................................AAGAGAGCTATCAGTCGACAG.................................................................................	21	4	7.25	0.00	0.25	0.00	7.00
....................................AAGAGAGCTATCCGTCGACATTC...............................................................................	23	4	7.00	2.50	2.75	0.50	1.25
....................................AAGAGAGCTATCCGTTGACAGTC...............................................................................	23	4	6.75	1.50	3.00	0.25	2.00
....................................AAGAGAGCTACCCGTCGACAGT................................................................................	22	4	6.75	0.75	0.25	0.00	5.75
....................................AAGAGAGCCATCCGTCGACAGTC...............................................................................	23	4	6.50	2.00	1.25	0.50	2.75
.......................................................................................CTGTCATGGAGTTGCTCTCTTTG............................	23	4	6.25	2.50	3.00	0.50	0.25
.......................................................................................CTGTCATGGACTTGCTCTCTTTG............................	23	4	6.25	3.00	3.00	0.25	0.00
....................................AAGAGAGCTATCCGTAGACAGTC...............................................................................	23	4	6.25	1.25	4.25	0.25	0.50
....................................AAGAGAGCTATCCATCGACAGTC...............................................................................	23	4	6.25	2.00	1.50	0.50	2.25
....................................AAGAGGGCTATCCGTCGACAG.................................................................................	21	4	6.25	1.00	0.00	0.00	5.25
....................................AAGAGAGCTATCCGCCGACAGT................................................................................	22	4	6.00	2.00	0.75	0.00	3.25
....................................GAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	5.75	1.75	1.25	0.50	2.25
.....................................AGAGAGCTGTCCGTCGACAGTC...............................................................................	22	4	5.75	2.25	3.00	0.50	0.00
....................................AAGAGAGCTATCCGTCTACAGT................................................................................	22	4	5.75	3.50	1.25	0.00	1.00
....................................AAGAGAGCCATCCGTCGACAGT................................................................................	22	4	5.75	0.75	0.50	0.25	4.25
....................................AAGAGAGCTATCCGTCGGCAGTC...............................................................................	23	4	5.75	1.50	2.25	0.00	2.00
.......................................................................................CTGTCATGGAATTGCTCCCTTTG............................	23	4	5.75	3.00	2.00	0.50	0.25
....................................AAGACAGCTATCCGTCGACAGTC...............................................................................	23	4	5.50	1.00	2.00	0.00	2.50
.......................................................................................CTGTCACGGAATTGCTCTCTTTG............................	23	4	5.50	1.75	3.00	0.50	0.25
.......................................................................................CCGTCATGGAATTGCTCTCTTTG............................	23	4	5.50	2.25	3.00	0.00	0.25
....................................AAGAGAGCTATCCGTCCACAGTC...............................................................................	23	4	5.25	2.25	1.75	0.25	1.00

droVir3

CTAACC---A----AAC--TTGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGCT----A--T--ACAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGACTTTAT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	4	48718.50	5573.75	34.25	19.25	42118.75	972.50
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	37626.75	6936.00	58.25	51.00	29489.25	1092.25
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	4	25686.00	1876.25	17.00	3.50	23299.00	490.25
....................................AAGAGAGCTATCCGTCGACAGG................................................................................	22	4	5809.75	19.25	0.00	0.00	5666.25	124.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	4	5201.75	4270.50	68.75	128.25	697.00	37.25
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	4	3712.25	3470.75	44.25	46.75	144.50	6.00
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	4	3691.25	1034.50	4.75	0.25	2604.75	47.00
....................................AAGAGAGCTATCCGTCGACAGC................................................................................	22	4	3163.75	22.00	0.00	0.25	3044.25	97.25
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	4	2897.50	2748.75	35.50	51.00	59.75	2.50
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	4	2564.50	1344.25	4.25	4.75	1182.50	28.75
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	4	1958.00	443.75	0.75	1.00	1470.75	41.75
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	4	1509.00	1470.75	12.25	2.00	23.75	0.25
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	4	1430.50	83.00	1.00	0.00	1321.00	25.50
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	4	884.50	804.50	8.50	2.75	65.75	3.00
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	4	468.00	133.75	1.75	0.00	319.75	12.75
....................................AAGAGAGCTATCCGTCGACAC.................................................................................	21	4	300.50	2.00	0.00	0.00	288.00	10.50
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	2	571.50	198.00	1.00	0.00	358.00	14.50
........................................GAGCTATCCGTCGACAGTC...............................................................................	19	4	252.50	1.00	0.00	0.00	244.25	7.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	4	211.75	192.25	2.00	12.50	4.50	0.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTGT...........................	24	4	207.00	176.25	3.50	2.25	24.25	0.75
........................................................................................TGTCATGGAATTGCTCTCTTTT............................	22	4	204.25	197.75	2.50	3.50	0.50	0.00
........................................GAGCTATCCGTCGACAGT................................................................................	18	4	192.00	0.25	0.00	0.00	190.00	1.75
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	4	187.00	131.00	2.25	0.00	48.25	5.50
....................................AAGAGAGCTATCCGTCGACGG.................................................................................	21	4	172.00	2.25	0.00	0.00	166.75	3.00
........................................................................................TGTCATGGAATTGCTCTCTTTGTC..........................	24	4	165.00	129.50	4.00	0.75	27.75	3.00
....................................AAGAGAGCTATCCGTCGACAGAC...............................................................................	23	4	123.00	6.50	0.00	0.00	111.50	5.00
....................................AAGAGAGCTATCCGTCGACG..................................................................................	20	4	122.50	1.50	0.00	0.00	119.50	1.50
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	4	115.75	102.75	0.75	0.25	10.75	1.25
....................................AAGAGAGCTATCCGTCGACCGT................................................................................	22	4	114.50	6.25	0.00	0.25	107.50	0.50
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	4	99.75	24.75	0.50	0.25	71.75	2.50
....................................AAGAGAGCTATCCGTCGACAGTCG..............................................................................	24	4	98.25	4.25	0.00	0.00	92.25	1.75
....................................AAGGGAGCTATCCGTCGACAGT................................................................................	22	4	91.75	4.75	0.00	0.00	84.50	2.50
....................................AAGAGGGCTATCCGTCGACAGT................................................................................	22	4	88.75	4.75	0.00	0.00	81.00	3.00
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	4	81.00	73.25	1.50	2.75	2.75	0.75
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	4	78.75	69.00	0.25	1.25	7.75	0.50
....................................AAGAGAGCTATCCGTCGACAGCC...............................................................................	23	4	75.75	20.25	2.00	0.50	51.00	2.00
....................................AAGAGAGCTATCCGTCGACCGTC...............................................................................	23	4	75.75	2.75	0.25	1.00	69.50	2.25
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	4	75.00	30.75	1.00	0.00	39.00	4.25
....................................AAGAGAGCTATCCGTCGACT..................................................................................	20	4	72.50	11.50	0.00	0.00	60.75	0.25
....................................AAGAGAGCTATCCGTCGACAGTTT..............................................................................	24	2	138.00	64.50	0.50	0.00	71.00	2.00
....................................AAGAGGGCTATCCGTCGACAGTC...............................................................................	23	4	68.50	6.75	0.00	0.00	59.50	2.25
....................................AAGGGAGCTATCCGTCGACAGTC...............................................................................	23	4	67.25	7.50	0.25	0.25	57.00	2.25
....................................AAGAGAGCTATCCGTCGACCG.................................................................................	21	4	64.75	3.75	0.25	0.00	59.75	1.00
.....................................AGAGAGCTATCCGTCGACAGTC...............................................................................	22	4	59.75	9.50	0.75	0.00	47.75	1.75
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	4	59.25	41.50	0.25	0.00	17.50	0.00
....................................AGGAGAGCTATCCGTCGACAGT................................................................................	22	4	59.00	3.00	0.00	0.00	54.50	1.50
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	4	56.50	47.25	0.50	0.25	7.75	0.75
....................................AAGAGAGCTATACGTCGACAGT................................................................................	22	4	54.75	1.75	0.00	0.00	52.50	0.50
.....................................AGAGAGCTATCCGTCGACAGT................................................................................	21	4	52.25	5.25	0.00	0.00	45.00	2.00
....................................AATAGAGCTATCCGTCGACAGT................................................................................	22	4	49.50	3.00	0.00	0.25	44.50	1.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTGA...........................	24	4	48.75	19.25	0.50	2.00	25.50	1.50
....................................AAGAGAGCTACCCGTCGACAGT................................................................................	22	4	48.25	4.50	0.00	0.00	43.50	0.25
....................................AAGAGAGCTACCCGTCGACAGTC...............................................................................	23	4	47.50	7.75	0.00	0.00	38.25	1.50
....................................AAGAGGGCTATCCGTCGACAG.................................................................................	21	4	46.75	1.25	0.00	0.00	44.75	0.75
....................................AAGGGAGCTATCCGTCGACAG.................................................................................	21	4	46.50	1.25	0.00	0.00	43.75	1.50
....................................AATAGAGCTATCCGTCGACAGTC...............................................................................	23	4	46.25	3.75	0.00	0.25	40.50	1.75
.........................................................................................GTCATGGAATTGCTCTCTTTGT...........................	22	4	45.00	42.75	1.00	0.50	0.75	0.00
....................................AAGAGAGCTATCCGCCGACAGT................................................................................	22	4	43.75	11.25	0.00	0.00	31.75	0.75
....................................AAGAGATCTATCCGTCGACAGT................................................................................	22	4	42.25	3.50	0.00	0.00	38.50	0.25
....................................AGGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	41.25	6.50	0.00	0.25	33.25	1.25
....................................AAGAGAGCTATCCGTCAACAGTC...............................................................................	23	4	39.75	15.75	0.25	0.00	22.50	1.25
....................................AAGAGAGCTATCCGTCGAAAGTC...............................................................................	23	4	39.25	8.75	0.00	0.00	29.00	1.50
....................................AAGAGAGCCATCCGTCGACAGT................................................................................	22	4	37.00	2.00	0.00	0.00	34.00	1.00
....................................AAGAGAGCTATCCGCCGACAGTC...............................................................................	23	4	35.75	14.25	1.00	0.50	19.00	1.00
....................................AAGAGATCTATCCGTCGACAGTC...............................................................................	23	4	35.50	2.75	0.00	0.00	32.50	0.25
....................................AAGAGAGCTATACGTCGACAG.................................................................................	21	4	34.50	1.25	0.00	0.00	32.25	1.00
....................................AAGAGAGCTGTCCGTCGACAGT................................................................................	22	4	34.00	10.25	0.00	0.25	23.25	0.25
....................................AGGAGAGCTATCCGTCGACAG.................................................................................	21	4	33.75	1.75	0.00	0.00	31.75	0.25
....................................AAGAGAGCTATCCGTCGGCAGT................................................................................	22	4	31.50	5.00	0.25	0.00	25.50	0.75
....................................AAGAGAGCTATCCGTCGACAA.................................................................................	21	4	30.00	4.00	0.00	0.00	24.50	1.50
....................................AAGAGAGCTATCCGTCAACAGT................................................................................	22	4	30.00	11.50	0.00	0.00	18.00	0.50
....................................AAGAGAGCTATCCGTCGACAGTAA..............................................................................	24	2	58.50	9.00	0.00	0.00	47.00	2.50
....................................AAGAGAGCCATCCGTCGACAGTC...............................................................................	23	4	28.25	4.25	0.25	0.25	22.00	1.50
....................................AAGATAGCTATCCGTCGACAGTC...............................................................................	23	4	28.00	4.25	0.00	0.25	23.00	0.50
........................................................................................TGTCATGGAATTGCTCTCTTTTT...........................	23	4	27.00	23.50	0.50	3.00	0.00	0.00
........................................GAGCTATCCGTCGACAGG................................................................................	18	4	26.50	0.00	0.00	0.00	25.75	0.75
....................................AAGAGAGCTATCCGTCGACAGGC...............................................................................	23	4	26.25	17.00	0.25	0.50	8.50	0.00
....................................AAGAGAGCTATCCGTCTACAGTC...............................................................................	23	4	26.25	10.25	0.00	1.00	14.50	0.50
....................................AAGAGAGCTATCCGTCGGCAGTC...............................................................................	23	4	26.00	6.75	0.00	0.00	18.00	1.25
....................................AAGAGAGCTATACGTCGACAGTC...............................................................................	23	4	25.50	7.00	0.00	0.00	18.50	0.00
....................................AAGAGAGCTATCCGTCGACAGTCTT.............................................................................	25	2	50.50	10.00	0.50	0.00	38.50	1.50
....................................AAGAGAGCTATCCGCCGACAG.................................................................................	21	4	23.50	4.00	0.50	0.00	19.00	0.00
....................................AAGAGAGCTATCCGTCGAAAGT................................................................................	22	4	23.25	3.50	0.25	0.25	18.50	0.75
....................................AAGAGAGCTATCCATCGACAGT................................................................................	22	4	22.25	5.50	0.75	0.00	15.50	0.50
....................................AACAGAGCTATCCGTCGACAGT................................................................................	22	4	21.75	0.75	0.00	0.00	21.00	0.00
....................................AAGAGAGCTGTCCGTCGACAGTC...............................................................................	23	4	21.50	7.75	0.00	0.00	13.50	0.25
....................................GAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	21.50	5.50	0.00	0.00	15.50	0.50
....................................AAGAGAGCTATCTGTCGACAGTC...............................................................................	23	4	20.50	4.25	0.00	0.00	14.75	1.50
....................................AAGAGAGCTATCCGTCCACAGTC...............................................................................	23	4	20.25	12.50	0.00	0.25	7.25	0.25
....................................AAGAGAGCTATCCATCGACAGTC...............................................................................	23	4	20.00	6.50	0.00	0.25	12.50	0.75
....................................AAGAGAGCTATCCGTCGA....................................................................................	18	4	19.50	3.75	0.00	0.25	15.50	0.00
........................................................................................TGTCATGGAATTGCTCTCT...............................	19	4	19.50	7.25	0.25	0.25	10.75	1.00
....................................AAGAGAGCTATCTGTCGACAGT................................................................................	22	4	19.50	2.25	0.25	0.00	17.00	0.00
....................................AAGAGAGCTATCCGTCGACAGTG...............................................................................	23	4	19.00	5.00	0.25	0.50	13.25	0.00
....................................AAGAGAGCTACCCGTCGACAG.................................................................................	21	4	18.75	2.75	0.00	0.00	15.50	0.50
....................................AAGAGAGCTATCCGTCGACGGT................................................................................	22	4	18.75	4.50	0.25	0.00	13.75	0.25
....................................AAGAGAGCTATCCGTCGGCAG.................................................................................	21	4	18.50	1.75	0.00	0.00	16.75	0.00
....................................AAGAGAGCCATCCGTCGACAG.................................................................................	21	4	18.25	0.75	0.25	0.00	17.00	0.25
....................................AAGAGAGCTATCCGTCGACC..................................................................................	20	4	17.75	0.75	0.00	0.00	15.75	1.25
....................................AAGAGAGCTATCCGTCGACAATC...............................................................................	23	4	17.50	7.00	0.00	0.00	10.25	0.25
......................................AAGAGCTATCCGTCGACAGTC...............................................................................	21	4	17.50	5.00	0.00	0.00	12.25	0.25

droMoj3

CCCTCA---G----T---TCTGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----ATAT--ACATATTTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGAT-ATAT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	5132.50	4778.50	150.00	98.75	105.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	4	4423.25	4110.25	120.75	77.50	114.75
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	4	2730.50	2603.75	68.75	39.00	19.00
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	4	1864.75	1723.50	69.50	48.50	23.25
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	4	1853.75	1811.25	21.00	12.50	9.00
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	4	1506.00	1334.50	79.00	42.00	50.50
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	4	757.00	730.25	14.75	10.25	1.75
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	4	730.75	688.00	19.00	22.50	1.25
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	4	608.25	570.25	19.00	17.25	1.75
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	4	553.75	538.75	8.25	5.75	1.00
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	4	474.00	454.50	9.50	9.75	0.25
........................................................................................TGTCATGGAATTGCTCTCTTTGTC..........................	24	4	234.25	203.00	18.75	12.00	0.50
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	4	222.25	213.75	3.50	3.00	2.00
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	4	203.25	193.75	4.25	4.25	1.00
.........................................................................................GTCATGGAATTGCTCTCTTTGT...........................	22	4	130.25	125.00	1.75	1.00	2.50
.......................................................................................CTGTCATGGAATTGCTCTCTTTGT...........................	24	4	108.75	100.25	2.25	2.50	3.75
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	4	102.75	92.50	4.50	4.00	1.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	4	93.25	84.00	1.50	6.00	1.75
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	4	89.75	86.25	2.75	0.50	0.25
........................................................................................TGTCATGGAATTGCTCTCTTTC............................	22	4	85.50	78.25	3.50	3.75	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTC............................	23	4	69.25	66.25	1.50	1.50	0.00
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	4	66.75	64.75	0.75	1.25	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTT............................	22	4	66.00	59.75	2.00	4.00	0.25
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	2	128.00	122.00	2.00	3.50	0.50
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	4	52.75	49.50	0.75	0.50	2.00
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	4	43.00	40.75	0.50	1.00	0.75
....................................................................................ATACTGTCATGGAATTGCTCTCT...............................	23	4	35.50	31.25	1.75	1.00	1.50
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	4	29.75	28.00	0.50	1.25	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTGA...........................	24	4	27.25	24.25	1.00	0.00	2.00
....................................AAGAGAGCTATCCGTCGACAGTTT..............................................................................	24	2	51.50	51.50	0.00	0.00	0.00
.........................................................................................GTCATGGAATTGCTCTCTTTG............................	21	4	19.50	19.25	0.00	0.00	0.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTGC...........................	24	4	18.50	16.75	1.00	0.75	0.00
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	4	18.00	16.25	1.00	0.50	0.25
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	4	17.75	15.50	1.00	1.00	0.25
....................................AAGAGAGCTATCCGTCGACT..................................................................................	20	4	16.50	15.50	0.50	0.50	0.00
....................................AAGAGAGCTGTCCGTCGACAGTC...............................................................................	23	4	13.50	12.50	0.00	0.00	1.00
....................................AAGAGAGCTATCCGTCGACAGC................................................................................	22	4	12.50	11.00	1.25	0.00	0.25
....................................AAGAGAGCTATCCGTCGACAGCC...............................................................................	23	4	11.75	8.50	2.00	1.00	0.25
........................................................................................TGTCATGGAATTGCTCTCTTTGTA..........................	24	4	10.75	9.50	0.00	0.00	1.25
....................................AAGAGAGCTATCCGTCGACAGTCCT.............................................................................	25	4	10.00	10.00	0.00	0.00	0.00
.......................................................................................CTGCCATGGAATTGCTCTCTTTG............................	23	4	9.25	7.50	1.00	0.75	0.00
....................................AAGAGAGCTATCCGTCTACAGTC...............................................................................	23	4	9.00	8.50	0.25	0.25	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTGTC..........................	25	4	8.75	8.00	0.25	0.25	0.25
....................................................................................ATACTGTCATGGAATTGCTCTC................................	22	4	7.25	6.75	0.50	0.00	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTTT...........................	23	4	7.25	3.50	1.25	2.00	0.50
....................................................................................ATACTGTCATGGAATTGCTCT.................................	21	4	7.25	6.25	0.25	0.75	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTC.............................	22	4	7.25	6.75	0.50	0.00	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTGTCT.........................	25	4	7.00	6.75	0.25	0.00	0.00
....................................AAGAGGGCTATCCGTCGACAGTC...............................................................................	23	4	7.00	6.75	0.00	0.25	0.00
....................................AATAGAGCTATCCGTCGACAGTC...............................................................................	23	4	6.75	6.50	0.25	0.00	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTTC...........................	23	4	6.75	6.50	0.00	0.25	0.00
....................................AAGAGAGCTGTCCGTCGACAGT................................................................................	22	4	6.75	6.50	0.25	0.00	0.00
.....................................AGAGAGCTATCCGTCGACAGTC...............................................................................	22	4	6.75	5.75	0.75	0.25	0.00
....................................AAGAGAGCTATCCGTCGACCGTC...............................................................................	23	4	6.50	0.25	0.25	4.50	1.50
....................................AAGAGAGCTATCCGTCGACAGTCTT.............................................................................	25	2	12.50	12.00	0.50	0.00	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTTT...........................	24	4	6.25	5.75	0.50	0.00	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTGTCA.........................	25	4	6.25	5.50	0.00	0.25	0.50
....................................AAGGGAGCTATCCGTCGACAGTC...............................................................................	23	4	6.00	5.00	0.75	0.25	0.00
.....................................AGAGAGCTGTCCGTCGACAGT................................................................................	21	4	5.75	5.00	0.25	0.50	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTA............................	23	4	5.50	4.75	0.25	0.25	0.25
.......................................................................................CTGTCATGAAATTGCTCTCTTTG............................	23	4	5.50	5.25	0.00	0.25	0.00
........................................................................................TGTCATGGAATTGCTCTCTTC.............................	21	4	5.25	5.00	0.25	0.00	0.00
.......................................................................................CTGTCATGGAATTGCCCTCTTTG............................	23	4	5.25	4.75	0.25	0.00	0.25
....................................AAGAGAGCTATCCGTTGACAGTC...............................................................................	23	4	5.00	4.50	0.00	0.25	0.25
....................................AAGAGAGCTATCCGTCGACAGCCT..............................................................................	24	2	10.00	9.00	1.00	0.00	0.00
.......................................................................................CTGTCATGGGATTGCTCTCTTTG............................	23	4	5.00	4.00	0.50	0.50	0.00
....................................AAGAGAGCTATCCGTCGACAGTCCA.............................................................................	25	4	5.00	4.75	0.00	0.00	0.25
....................................AGGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	4.75	4.00	0.25	0.50	0.00
....................................AAGAGAGCTATCCGTTGACAGT................................................................................	22	4	4.75	4.50	0.00	0.00	0.25
....................................AAGAGAGCTATCCGTCGA....................................................................................	18	4	4.75	3.25	1.00	0.50	0.00
....................................AAGAGAGCTATCCGTCAACAGTC...............................................................................	23	4	4.75	3.50	1.00	0.00	0.25
....................................AAGAGAGCTATCCGCCGACAGTC...............................................................................	23	4	4.50	3.50	0.50	0.25	0.25
.....................................AGAGAGCTGTCCGTCGACAGTC...............................................................................	22	4	4.50	3.75	0.00	0.00	0.75
.........................................................................................GTCATGGAATTGCTCTCTTTGTC..........................	23	4	4.50	4.25	0.25	0.00	0.00
....................................AAGATAGCTATCCGTCGACAGTC...............................................................................	23	4	4.50	4.50	0.00	0.00	0.00
.......................................AGAGCTATCCGTCGACAGTCAAGTT----A.....................................................................	26	2	8.50	7.50	0.50	0.00	0.50
....................................AAAAGAGCTATCCGTCGACAGTC...............................................................................	23	4	4.25	4.00	0.00	0.00	0.25
....................................GAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	4.25	4.25	0.00	0.00	0.00
....................................AAGAGATCTATCCGTCGACAGTC...............................................................................	23	4	4.25	4.00	0.00	0.25	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTTTC...........................	24	4	4.25	3.75	0.00	0.50	0.00
....................................AAGAGAGCTATCCGTCTACAGT................................................................................	22	4	4.25	4.25	0.00	0.00	0.00
.....................................AGAGAGCTATCCGTCGACAGT................................................................................	21	4	4.00	3.25	0.50	0.25	0.00
.....................................AGAGAGCTATCCGTCGACAGTCT..............................................................................	23	4	4.00	3.75	0.00	0.25	0.00
........................................................................................TGTCATGGAATTGCTCTCTTTGTTC.........................	25	4	4.00	3.75	0.00	0.00	0.25
....................................AAGAGAGCTATCCGTCTACAGTCT..............................................................................	24	2	8.00	8.00	0.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGACATTC...............................................................................	23	4	3.75	3.25	0.25	0.25	0.00
....................................AAGAGAGCTACCCGTCGACAGTC...............................................................................	23	4	3.75	3.50	0.25	0.00	0.00
....................................AAGAGAGCTATCCGTCGGCAGTC...............................................................................	23	4	3.75	2.00	0.25	1.00	0.50
....................................AAGAGAGCTATCTGTCGACAGTC...............................................................................	23	4	3.75	3.25	0.25	0.25	0.00
.......................................................................................CTGTCATGGAATTGCTCTCTTCG............................	23	4	3.75	3.00	0.00	0.50	0.25
.......................................................................................CTGTCATGGAATTGCTCTATTTG............................	23	4	3.75	3.25	0.25	0.25	0.00
...................................CAAGAGAGCTATCCGTCGACAGTC...............................................................................	24	4	3.50	3.25	0.00	0.00	0.25
.......................................................................................CTGTCATGGCATTGCTCTCTTTG............................	23	4	3.50	1.75	0.00	1.00	0.75
........................................................................................TGGCATGGAATTGCTCTCTTTG............................	22	4	3.50	0.75	2.00	0.75	0.00
....................................AAGATAGCTATCCGTCGACAGT................................................................................	22	4	3.50	3.50	0.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGCCAGTC...............................................................................	23	4	3.50	1.00	1.00	1.00	0.50
....................................AAGAGAGCTACCCGTCGACAGT................................................................................	22	4	3.50	3.25	0.25	0.00	0.00
.......................................................................................CTGTCATTGAATTGCTCTCTTTG............................	23	4	3.50	3.50	0.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGACCGT................................................................................	22	4	3.50	0.50	0.50	1.75	0.75
....................................AAGAGAGCTATCCGTCGATAGTC...............................................................................	23	4	3.25	2.75	0.25	0.25	0.00
....................................AAGAGAGCTATCCTTCGACAGTC...............................................................................	23	4	3.25	2.75	0.00	0.25	0.25

droGri2

GTTTCA---C---AACAAATTACGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----ATAT--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGAT-----	Size	Hit Count	Total Norm	V109 Male body
........................................................................................TGTCATGGAATTGCTCTCTTTG............................	22	4	783.50	783.50
....................................AAGAGAGCTATCCGTCGACAGTC...............................................................................	23	4	669.00	669.00
....................................AAGAGAGCTATCCGTCGACAGT................................................................................	22	4	524.25	524.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTG............................	23	4	512.00	512.00
........................................................................................TGTCATGGAATTGCTCTCTTTGT...........................	23	4	358.50	358.50
........................................................................................TGTCATGGAATTGCTCTCTTT.............................	21	4	238.75	238.75
....................................AAGAGAGCTATCCGTCGACAGTCT..............................................................................	24	4	212.25	212.25
.......................................................................................CTGTCATGGAATTGCTCTCTTT.............................	22	4	142.25	142.25
....................................AAGAGAGCTATCCGTCGACAG.................................................................................	21	4	98.75	98.75
....................................AAGAGAGCTATCCGTCGACA..................................................................................	20	4	76.50	76.50
....................................AAGAGAGCTATCCGTCGACAGTT...............................................................................	23	4	58.25	58.25
.......................................................................................CTGTCATGGAATTGCTCTCTT..............................	21	4	36.00	36.00
........................................................................................TGTCATGGAATTGCTCTCTTTGC...........................	23	4	27.50	27.50
........................................................................................TGTCATGGAATTGCTCTCTTTGTT..........................	24	4	20.25	20.25
........................................................................................TGTCATGGAATTGCTCTCTTTT............................	22	4	19.75	19.75
.......................................................................................CTGTCATGGAATTGCTCTCTTTT............................	23	4	17.00	17.00
....................................AAGAGAGCTATCCGTCGACAGTCC..............................................................................	24	4	15.75	15.75
........................................................................................TGTCATGGAATTGCTCTCTT..............................	20	4	13.25	13.25
.......................................................................................CTGTCATGGAATTGCTCTCT...............................	20	4	12.00	12.00
........................................................................................TGTCATGGAATTGCTCTCTTTGA...........................	23	4	11.00	11.00
.........................................................................................GTCATGGAATTGCTCTCTTTGT...........................	22	4	9.50	9.50
....................................AAGAGAGCTATCCGTCGAC...................................................................................	19	4	8.75	8.75
....................................AAGAGAGCTATCCGTCGACAGTA...............................................................................	23	4	7.25	7.25
....................................AAGAGAGCTATCCGTCGCCAGT................................................................................	22	4	7.00	7.00
....................................AAGAGAGCTATCCGTCGACAGTCA..............................................................................	24	2	13.00	13.00
........................................................................................TGTCATGGAATTGCTCTATTTG............................	22	4	6.25	6.25
....................................AAGAGAGCTATCCGTCGACAGTG...............................................................................	23	4	5.75	5.75
....................................AAGAGAGCTATCCGTCGCCAGTC...............................................................................	23	4	5.25	5.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTGT...........................	24	4	5.25	5.25
.......................................................................................CTGTCATGGAATTGCTCCCTTTG............................	23	4	5.25	5.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTC............................	23	4	5.00	5.00
........................................................................................TGTCATGGAATTGCTCTTTTTG............................	22	4	4.25	4.25
........................................................................................TGTCATGGAATTGCTCTGTTTG............................	22	4	4.25	4.25
....................................AAGAGAGCTATCCGTCGTCAGT................................................................................	22	4	4.00	4.00
....................................AAGAGAGCTATCCGTCGACAGTTT..............................................................................	24	2	7.50	7.50
....................................AAGAGAGCTATCCGTCGTCAGTC...............................................................................	23	4	3.75	3.75
........................................................................................TGTCATGGAATTGCTCTATTTGT...........................	23	4	3.50	3.50
.......................................................................................CTGTCATGGAATTGCTCACTTTG............................	23	4	3.50	3.50
....................................AAGAGCGCTATCCGTCGACAGTC...............................................................................	23	4	3.50	3.50
........................................................................................TGCCATGGAATTGCTCTCTTTG............................	22	4	3.25	3.25
.......................................................................................CTGTCATGGAATTGCTCTCTTTA............................	23	4	3.25	3.25
....................................AATAGAGCTATCCGTCGACAGTC...............................................................................	23	4	3.25	3.25
....................................AAGAGAGCTATCCGTCGGCAGTC...............................................................................	23	4	3.00	3.00
....................................AAGAGCGCTATCCGTCGACAGT................................................................................	22	4	2.75	2.75
........................................................................................TGTCATGGCATTGCTCTCTTTG............................	22	4	2.75	2.75
.........................................................................................GTCATGGAATTGCTCTCTTTG............................	21	4	2.75	2.75
........................................................................................TGTCATGGAATTGCTCTCTTTGTA..........................	24	4	2.75	2.75
........................................................................................TGTCAAGGAATTGCTCTCTTTG............................	22	4	2.50	2.50
........................................................................................TGTCATGGAATTGCCCTCTTTG............................	22	4	2.50	2.50
.....................................AGAGAGCTGTCCGTCGACAGTC...............................................................................	22	4	2.25	2.25
....................................AAGAGAGCTATCCGTCGGCAGT................................................................................	22	4	2.25	2.25
........................................................................................TGTCATGGTATTGCTCTCTTTG............................	22	4	2.25	2.25
....................................AAGAGAACTATCCGTCGACAGTC...............................................................................	23	4	2.25	2.25
....................................AAGAGACCTATCCGTCGACAGTC...............................................................................	23	4	2.25	2.25
........................................................................................TGTCATGGAATTGCTCTTTTTGT...........................	23	4	2.25	2.25
.......................................................................................CTGTCATGGAATTGCTCTCCTTG............................	23	4	2.25	2.25
........................................................................................TGTCATGGCATTGCTCTCTTTGT...........................	23	4	2.25	2.25
....................................AAGAGAGCTATCCGTCGCCAGTCT..............................................................................	24	2	4.50	4.50
.......................................................................................CTGTCATGGAATTGCTCGCTTTG............................	23	4	2.00	2.00
........................................................................................TGTCATGGAATTGCTCTATTT.............................	21	4	2.00	2.00
........................................................................................TGTCATGGAATTGCTCTGTTTGT...........................	23	4	2.00	2.00
....................................AAGAGAGCCATCCGTCGACAGTC...............................................................................	23	4	2.00	2.00
.......................................................................................CTGTCATGTAATTGCTCTCTTTG............................	23	4	2.00	2.00
........................................................................................TGTCATCGAATTGCTCTCTTTG............................	22	4	2.00	2.00
....................................AAGAGACCTATCCGTCGACAGT................................................................................	22	4	2.00	2.00
....................................AAGAGGGCTATCCGTCGACAGTC...............................................................................	23	4	2.00	2.00
....................................AAGAGAGCCATCCGTCGACAGT................................................................................	22	4	2.00	2.00
........................................................................................TGACATGGAATTGCTCTCTTTG............................	22	4	2.00	2.00
........................................................................................TGTCATAGAATTGCTCTCTTTG............................	22	4	2.00	2.00
....................................AAGAGAGCTATCCGCCGACAGTC...............................................................................	23	4	2.00	2.00
.......................................................................................CTGTCCTGGAATTGCTCTCTTTG............................	23	4	1.75	1.75
.......................................................................................CTGTCACGGAATTGCTCTCTTTG............................	23	4	1.75	1.75
........................................................................................TGTCATGGAATTGCTCTCT...............................	19	4	1.75	1.75
........................................................................................TGTCATGGAATTGCTCTCTTTGG...........................	23	4	1.75	1.75
........................................................................................TGTCATGGAACTGCTCTCTTTG............................	22	4	1.75	1.75
.......................................................................................CTGTCATGGAATTGCTCACTTT.............................	22	4	1.75	1.75
........................................................................................TGCCATGGAATTGCTCTCTTT.............................	21	4	1.75	1.75
....................................AACAGAGCTATCCGTCGACAGTC...............................................................................	23	4	1.75	1.75
....................................AAGAGAGCTATCCGTCGACAGA................................................................................	22	4	1.75	1.75
.......................................................................................CTGTCAAGGAATTGCTCTCTTTG............................	23	4	1.50	1.50
........................................................................................TGACATGGAATTGCTCTCTTT.............................	21	4	1.50	1.50
....................................AAGAGATCTATCCGTCGACAGTC...............................................................................	23	4	1.50	1.50
........................................................................................TGTCATGGAATTGCTCTCTTTTT...........................	23	4	1.50	1.50
....................................AAGAGAGCCATCCGTCGACAGTT...............................................................................	23	2	3.00	3.00
....................................AAGAGAGCAATCCGTCGACAGTC...............................................................................	23	4	1.50	1.50
....................................AAGAGAGCTATCCGTCCACAGTC...............................................................................	23	4	1.50	1.50
........................................................................................TGTCATGGCATTGCTCTCTTT.............................	21	4	1.50	1.50
....................................AAGAGAACTATCCGTCGACAGT................................................................................	22	4	1.50	1.50
....................................AAGAGAGCTATCCGTCGACAGTCTT.............................................................................	25	2	3.00	3.00
.......................................................................................CTATCATGGAATTGCTCTCTTTG............................	23	4	1.25	1.25
........................................................................................TGGCATGGAATTGCTCTCTTTG............................	22	4	1.25	1.25
........................................................................................TTTCATGGAATTGCTCTCTTTG............................	22	4	1.25	1.25
........................................................................................TGTCATGCAATTGCTCTCTTTG............................	22	4	1.25	1.25
....................................AAGAGAGCTATCCGTCGGCAGTCT..............................................................................	24	2	2.50	2.50
.......................................................................................CTGTCATGGAATTGCTCCCTTT.............................	22	4	1.25	1.25
........................................................................................TGTCATGGAATTGCTCTTTTT.............................	21	4	1.25	1.25
...................................GAAGAGAGCTGTCCGTCGACAGT................................................................................	23	4	1.25	1.25
........................................................................................TGTCATGGACTTGCTCTCTTTG............................	22	4	1.25	1.25
........................................................................................TGTCATGGAATTGCCCTCTTTGT...........................	23	4	1.25	1.25
.......................................................................................CTGTCATGGAATTGCTCGCTTT.............................	22	4	1.25	1.25
....................................AAGAGAGCAATCCGTCGACAGT................................................................................	22	4	1.25	1.25

Generated: 04/20/2012 at 05:27:21 EDT

dme-mir-281-2

chr2R:8057658-8057749 -

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup